I: pbuilder: network access will be disabled during build I: Current time: Fri Jun 21 02:51:10 -12 2024 I: pbuilder-time-stamp: 1718981470 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [cmtk_3.3.1p2+dfsg-2.dsc] I: copying [./cmtk_3.3.1p2+dfsg.orig.tar.xz] I: copying [./cmtk_3.3.1p2+dfsg-2.debian.tar.xz] I: Extracting source gpgv: Signature made Wed May 11 19:39:02 2022 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./cmtk_3.3.1p2+dfsg-2.dsc: no acceptable signature found dpkg-source: info: extracting cmtk in cmtk-3.3.1p2+dfsg dpkg-source: info: unpacking cmtk_3.3.1p2+dfsg.orig.tar.xz dpkg-source: info: unpacking cmtk_3.3.1p2+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying up_assure_no_as_needed_for_checklibdep dpkg-source: info: applying reproducible_build dpkg-source: info: applying fix_cmake_version_comparison dpkg-source: info: applying dcmtk-3.6.1-compatibility I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2055053/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='26d7dd020b524e21835105e5937c0007' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2055053' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.VaDnYDt2/pbuilderrc_RDsC --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.VaDnYDt2/b1 --logfile b1/build.log cmtk_3.3.1p2+dfsg-2.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos5-amd64 6.1.0-0.deb11.6-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.15-1~bpo11+1 (2023-03-16) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Apr 23 2023 bash -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 2023 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 22 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 85600 Mar 22 2023 findmnt -rwsr-xr-x 1 root root 35128 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 2022 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 2023 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 22 2023 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 22 2023 more -rwsr-xr-x 1 root root 59704 Mar 22 2023 mount -rwxr-xr-x 1 root root 18744 Mar 22 2023 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 22 2023 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 2023 tar -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 22 2023 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 22 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/2055053/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libmxml-dev, libsqlite3-dev, zlib1g-dev | libz-dev, libdcmtk-dev | libdcmtk1-dev, libbz2-dev, libfftw3-dev, liblzma-dev, libpng-dev, libtiff-dev | libtiff4-dev, libwrap0-dev, libcharls-dev | libdcmtk1-dev, libxml2-dev, libssl-dev, xvfb, bc, dc, xauth dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libmxml-dev; however: Package libmxml-dev is not installed. pbuilder-satisfydepends-dummy depends on libsqlite3-dev; however: Package libsqlite3-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev | libz-dev; however: Package zlib1g-dev is not installed. Package libz-dev is not installed. pbuilder-satisfydepends-dummy depends on libdcmtk-dev | libdcmtk1-dev; however: Package libdcmtk-dev is not installed. Package libdcmtk1-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on libfftw3-dev; however: Package libfftw3-dev is not installed. pbuilder-satisfydepends-dummy depends on liblzma-dev; however: Package liblzma-dev is not installed. pbuilder-satisfydepends-dummy depends on libpng-dev; however: Package libpng-dev is not installed. pbuilder-satisfydepends-dummy depends on libtiff-dev | libtiff4-dev; however: Package libtiff-dev is not installed. Package libtiff4-dev is not installed. pbuilder-satisfydepends-dummy depends on libwrap0-dev; however: Package libwrap0-dev is not installed. pbuilder-satisfydepends-dummy depends on libcharls-dev | libdcmtk1-dev; however: Package libcharls-dev is not installed. Package libdcmtk1-dev is not installed. pbuilder-satisfydepends-dummy depends on libxml2-dev; however: Package libxml2-dev is not installed. pbuilder-satisfydepends-dummy depends on libssl-dev; however: Package libssl-dev is not installed. pbuilder-satisfydepends-dummy depends on xvfb; however: Package xvfb is not installed. pbuilder-satisfydepends-dummy depends on bc; however: Package bc is not installed. pbuilder-satisfydepends-dummy depends on dc; however: Package dc is not installed. pbuilder-satisfydepends-dummy depends on xauth; however: Package xauth is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bc{a} bsdextrautils{a} cmake{a} cmake-data{a} dc{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbrotli1{a} libbsd0{a} libbz2-dev{a} libcharls-dev{a} libcharls2{a} libcurl4{a} libdcmtk-dev{a} libdcmtk17{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libelf1{a} libexpat1{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-long3{a} libfftw3-quad3{a} libfftw3-single3{a} libfile-stripnondeterminism-perl{a} libfontenc1{a} libfreetype6{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libice6{a} libicu-dev{a} libicu72{a} libjbig-dev{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjsoncpp25{a} libldap-2.5-0{a} liblerc-dev{a} liblerc4{a} libllvm15{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libmxml-dev{a} libmxml1{a} libnghttp2-14{a} libpciaccess0{a} libpipeline1{a} libpixman-1-0{a} libpng-dev{a} libpng16-16{a} libproc2-0{a} libpsl5{a} libreadline8{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsm6{a} libsqlite3-dev{a} libssh2-1{a} libssl-dev{a} libsub-override-perl{a} libtiff-dev{a} libtiff6{a} libtiffxx6{a} libtool{a} libuchardet0{a} libunwind8{a} libuv1{a} libwebp-dev{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libwrap0{a} libwrap0-dev{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxaw7{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxfont2{a} libxkbfile1{a} libxml2{a} libxml2-dev{a} libxmu6{a} libxmuu1{a} libxpm4{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxt6{a} libxxf86vm1{a} libz3-4{a} libzstd-dev{a} m4{a} man-db{a} po-debconf{a} procps{a} readline-common{a} sensible-utils{a} x11-common{a} x11-xkb-utils{a} xauth{a} xkb-data{a} xserver-common{a} xvfb{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libpng-tools libsasl2-modules lynx psmisc publicsuffix wget xfonts-base 0 packages upgraded, 151 newly installed, 0 to remove and 0 not upgraded. Need to get 114 MB of archives. After unpacking 464 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 libproc2-0 amd64 2:4.0.2-3 [62.8 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 procps amd64 2:4.0.2-3 [709 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 11 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 bc amd64 1.07.1-3+b1 [110 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 libarchive13 amd64 3.6.2-1 [343 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1 [72.3 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get: 32 http://deb.debian.org/debian bookworm/main amd64 libcurl4 amd64 7.88.1-9 [386 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get: 34 http://deb.debian.org/debian bookworm/main amd64 libjsoncpp25 amd64 1.9.5-4 [78.6 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 librhash0 amd64 1.4.3-3 [134 kB] Get: 36 http://deb.debian.org/debian bookworm/main amd64 libuv1 amd64 1.44.2-1 [140 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 cmake-data all 3.25.1-1 [2026 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 cmake amd64 3.25.1-1 [8692 kB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 dc amd64 1.07.1-3+b1 [72.4 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 41 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 43 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 45 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 46 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 47 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 48 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 49 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 50 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 51 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 52 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 53 http://deb.debian.org/debian bookworm/main amd64 icu-devtools amd64 72.1-3 [206 kB] Get: 54 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB] Get: 55 http://deb.debian.org/debian bookworm/main amd64 libbz2-dev amd64 1.0.8-5+b1 [30.9 kB] Get: 56 http://deb.debian.org/debian bookworm/main amd64 libcharls2 amd64 2.4.1-1 [86.1 kB] Get: 57 http://deb.debian.org/debian bookworm/main amd64 libcharls-dev amd64 2.4.1-1 [29.2 kB] Get: 58 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.39-2 [276 kB] Get: 59 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB] Get: 60 http://deb.debian.org/debian bookworm/main amd64 libjbig0 amd64 2.1-6.1 [31.7 kB] Get: 61 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.5-2 [166 kB] Get: 62 http://deb.debian.org/debian bookworm/main amd64 liblerc4 amd64 4.0.0+ds-2 [170 kB] Get: 63 http://deb.debian.org/debian bookworm/main amd64 libwebp7 amd64 1.2.4-0.1 [285 kB] Get: 64 http://deb.debian.org/debian bookworm/main amd64 libtiff6 amd64 4.5.0-5 [316 kB] Get: 65 http://deb.debian.org/debian bookworm/main amd64 libwrap0 amd64 7.6.q-32 [54.9 kB] Get: 66 http://deb.debian.org/debian bookworm/main amd64 libdcmtk17 amd64 3.6.7-8+b1 [5062 kB] Get: 67 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get: 68 http://deb.debian.org/debian bookworm/main amd64 libpng-dev amd64 1.6.39-2 [359 kB] Get: 69 http://deb.debian.org/debian bookworm/main amd64 libssl-dev amd64 3.0.8-1 [2427 kB] Get: 70 http://deb.debian.org/debian bookworm/main amd64 libjbig-dev amd64 2.1-6.1 [31.0 kB] Get: 71 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-2 [290 kB] Get: 72 http://deb.debian.org/debian bookworm/main amd64 libjpeg-dev amd64 1:2.1.5-2 [71.8 kB] Get: 73 http://deb.debian.org/debian bookworm/main amd64 liblzma-dev amd64 5.4.1-0.2 [260 kB] Get: 74 http://deb.debian.org/debian bookworm/main amd64 libzstd-dev amd64 1.5.4+dfsg2-5 [354 kB] Get: 75 http://deb.debian.org/debian bookworm/main amd64 libwebpmux3 amd64 1.2.4-0.1 [109 kB] Get: 76 http://deb.debian.org/debian bookworm/main amd64 libwebpdemux2 amd64 1.2.4-0.1 [99.2 kB] Get: 77 http://deb.debian.org/debian bookworm/main amd64 libwebp-dev amd64 1.2.4-0.1 [400 kB] Get: 78 http://deb.debian.org/debian bookworm/main amd64 libtiffxx6 amd64 4.5.0-5 [144 kB] Get: 79 http://deb.debian.org/debian bookworm/main amd64 libdeflate-dev amd64 1.14-1 [53.3 kB] Get: 80 http://deb.debian.org/debian bookworm/main amd64 liblerc-dev amd64 4.0.0+ds-2 [175 kB] Get: 81 http://deb.debian.org/debian bookworm/main amd64 libtiff-dev amd64 4.5.0-5 [456 kB] Get: 82 http://deb.debian.org/debian bookworm/main amd64 libwrap0-dev amd64 7.6.q-32 [21.6 kB] Get: 83 http://deb.debian.org/debian bookworm/main amd64 libicu-dev amd64 72.1-3 [10.3 MB] Get: 84 http://deb.debian.org/debian bookworm/main amd64 libxml2-dev amd64 2.9.14+dfsg-1.2 [781 kB] Get: 85 http://deb.debian.org/debian bookworm/main amd64 libdcmtk-dev amd64 3.6.7-8+b1 [1013 kB] Get: 86 http://deb.debian.org/debian bookworm/main amd64 libdrm-common all 2.4.114-1 [7112 B] Get: 87 http://deb.debian.org/debian bookworm/main amd64 libdrm2 amd64 2.4.114-1+b1 [37.5 kB] Get: 88 http://deb.debian.org/debian bookworm/main amd64 libdrm-amdgpu1 amd64 2.4.114-1+b1 [20.9 kB] Get: 89 http://deb.debian.org/debian bookworm/main amd64 libpciaccess0 amd64 0.17-2 [51.4 kB] Get: 90 http://deb.debian.org/debian bookworm/main amd64 libdrm-intel1 amd64 2.4.114-1+b1 [64.0 kB] Get: 91 http://deb.debian.org/debian bookworm/main amd64 libdrm-nouveau2 amd64 2.4.114-1+b1 [19.1 kB] Get: 92 http://deb.debian.org/debian bookworm/main amd64 libdrm-radeon1 amd64 2.4.114-1+b1 [21.8 kB] Get: 93 http://deb.debian.org/debian bookworm/main amd64 libedit2 amd64 3.1-20221030-2 [93.0 kB] Get: 94 http://deb.debian.org/debian bookworm/main amd64 libfftw3-double3 amd64 3.3.10-1 [776 kB] Get: 95 http://deb.debian.org/debian bookworm/main amd64 libfftw3-long3 amd64 3.3.10-1 [337 kB] Get: 96 http://deb.debian.org/debian bookworm/main amd64 libfftw3-quad3 amd64 3.3.10-1 [603 kB] Get: 97 http://deb.debian.org/debian bookworm/main amd64 libfftw3-single3 amd64 3.3.10-1 [806 kB] Get: 98 http://deb.debian.org/debian bookworm/main amd64 libfftw3-bin amd64 3.3.10-1 [51.7 kB] Get: 99 http://deb.debian.org/debian bookworm/main amd64 libfftw3-dev amd64 3.3.10-1 [2123 kB] Get: 100 http://deb.debian.org/debian bookworm/main amd64 libfontenc1 amd64 1:1.1.4-1 [24.3 kB] Get: 101 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.12.1+dfsg-5 [399 kB] Get: 102 http://deb.debian.org/debian bookworm/main amd64 libglvnd0 amd64 1.6.0-1 [51.8 kB] Get: 103 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get: 104 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 105 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get: 106 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.8.4-2 [292 kB] Get: 107 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.8.4-2 [759 kB] Get: 108 http://deb.debian.org/debian bookworm/main amd64 libglapi-mesa amd64 22.3.6-1+deb12u1 [35.7 kB] Get: 109 http://deb.debian.org/debian bookworm/main amd64 libx11-xcb1 amd64 2:1.8.4-2 [192 kB] Get: 110 http://deb.debian.org/debian bookworm/main amd64 libxcb-dri2-0 amd64 1.15-1 [107 kB] Get: 111 http://deb.debian.org/debian bookworm/main amd64 libxcb-dri3-0 amd64 1.15-1 [107 kB] Get: 112 http://deb.debian.org/debian bookworm/main amd64 libxcb-glx0 amd64 1.15-1 [122 kB] Get: 113 http://deb.debian.org/debian bookworm/main amd64 libxcb-present0 amd64 1.15-1 [105 kB] Get: 114 http://deb.debian.org/debian bookworm/main amd64 libxcb-randr0 amd64 1.15-1 [117 kB] Get: 115 http://deb.debian.org/debian bookworm/main amd64 libxcb-shm0 amd64 1.15-1 [105 kB] Get: 116 http://deb.debian.org/debian bookworm/main amd64 libxcb-sync1 amd64 1.15-1 [109 kB] Get: 117 http://deb.debian.org/debian bookworm/main amd64 libxcb-xfixes0 amd64 1.15-1 [109 kB] Get: 118 http://deb.debian.org/debian bookworm/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get: 119 http://deb.debian.org/debian bookworm/main amd64 libxfixes3 amd64 1:6.0.0-2 [22.7 kB] Get: 120 http://deb.debian.org/debian bookworm/main amd64 libxshmfence1 amd64 1.3-1 [8820 B] Get: 121 http://deb.debian.org/debian bookworm/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get: 122 http://deb.debian.org/debian bookworm/main amd64 libz3-4 amd64 4.8.12-3.1 [7216 kB] Get: 123 http://deb.debian.org/debian bookworm/main amd64 libllvm15 amd64 1:15.0.6-4+b1 [23.1 MB] Get: 124 http://deb.debian.org/debian bookworm/main amd64 libsensors-config all 1:3.6.0-7.1 [14.3 kB] Get: 125 http://deb.debian.org/debian bookworm/main amd64 libsensors5 amd64 1:3.6.0-7.1 [34.2 kB] Get: 126 http://deb.debian.org/debian bookworm/main amd64 libgl1-mesa-dri amd64 22.3.6-1+deb12u1 [7239 kB] Get: 127 http://deb.debian.org/debian bookworm/main amd64 libglx-mesa0 amd64 22.3.6-1+deb12u1 [147 kB] Get: 128 http://deb.debian.org/debian bookworm/main amd64 libglx0 amd64 1.6.0-1 [34.4 kB] Get: 129 http://deb.debian.org/debian bookworm/main amd64 libgl1 amd64 1.6.0-1 [88.4 kB] Get: 130 http://deb.debian.org/debian bookworm/main amd64 x11-common all 1:7.7+23 [252 kB] Get: 131 http://deb.debian.org/debian bookworm/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Get: 132 http://deb.debian.org/debian bookworm/main amd64 libmxml1 amd64 3.3.1-1 [30.3 kB] Get: 133 http://deb.debian.org/debian bookworm/main amd64 libmxml-dev amd64 3.3.1-1 [726 kB] Get: 134 http://deb.debian.org/debian bookworm/main amd64 libpixman-1-0 amd64 0.42.2-1 [546 kB] Get: 135 http://deb.debian.org/debian bookworm/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get: 136 http://deb.debian.org/debian bookworm/main amd64 libsqlite3-dev amd64 3.40.1-2 [1025 kB] Get: 137 http://deb.debian.org/debian bookworm/main amd64 libunwind8 amd64 1.6.2-3 [51.2 kB] Get: 138 http://deb.debian.org/debian bookworm/main amd64 libxt6 amd64 1:1.2.1-1.1 [186 kB] Get: 139 http://deb.debian.org/debian bookworm/main amd64 libxmu6 amd64 2:1.1.3-3 [60.1 kB] Get: 140 http://deb.debian.org/debian bookworm/main amd64 libxpm4 amd64 1:3.5.12-1.1 [48.4 kB] Get: 141 http://deb.debian.org/debian bookworm/main amd64 libxaw7 amd64 2:1.0.14-1 [201 kB] Get: 142 http://deb.debian.org/debian bookworm/main amd64 libxfont2 amd64 1:2.0.6-1 [136 kB] Get: 143 http://deb.debian.org/debian bookworm/main amd64 libxkbfile1 amd64 1:1.1.0-1 [75.2 kB] Get: 144 http://deb.debian.org/debian bookworm/main amd64 libxmuu1 amd64 2:1.1.3-3 [23.9 kB] Get: 145 http://deb.debian.org/debian bookworm/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get: 146 http://deb.debian.org/debian bookworm/main amd64 libxrandr2 amd64 2:1.5.2-2+b1 [39.2 kB] Get: 147 http://deb.debian.org/debian bookworm/main amd64 x11-xkb-utils amd64 7.7+7 [165 kB] Get: 148 http://deb.debian.org/debian bookworm/main amd64 xauth amd64 1:1.1.2-1 [36.0 kB] Get: 149 http://deb.debian.org/debian bookworm/main amd64 xkb-data all 2.35.1-1 [764 kB] Get: 150 http://deb.debian.org/debian bookworm/main amd64 xserver-common all 2:21.1.7-3 [2382 kB] Get: 151 http://deb.debian.org/debian bookworm/main amd64 xvfb amd64 2:21.1.7-3 [3151 kB] Fetched 114 MB in 3s (41.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../000-libproc2-0_2%3a4.0.2-3_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.2-3) ... Selecting previously unselected package procps. Preparing to unpack .../001-procps_2%3a4.0.2-3_amd64.deb ... Unpacking procps (2:4.0.2-3) ... Selecting previously unselected package readline-common. Preparing to unpack .../002-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.44-3_amd64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../005-libmagic1_1%3a5.44-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.44-3_amd64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.21-12_amd64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../008-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.22.4-10_amd64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.38.1-5+b1_amd64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../011-libpipeline1_1.5.7-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.11.2-2_amd64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../013-m4_1.4.19-3_amd64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../014-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../015-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../016-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../017-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../018-libreadline8_8.2-1.3_amd64.deb ... Unpacking libreadline8:amd64 (8.2-1.3) ... Selecting previously unselected package bc. Preparing to unpack .../019-bc_1.07.1-3+b1_amd64.deb ... Unpacking bc (1.07.1-3+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../020-libicu72_72.1-3_amd64.deb ... Unpacking libicu72:amd64 (72.1-3) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../021-libxml2_2.9.14+dfsg-1.2_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.2) ... Selecting previously unselected package libarchive13:amd64. Preparing to unpack .../022-libarchive13_3.6.2-1_amd64.deb ... Unpacking libarchive13:amd64 (3.6.2-1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../023-libbrotli1_1.0.9-2+b6_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b6) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../024-libsasl2-modules-db_2.1.28+dfsg-10_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../025-libsasl2-2_2.1.28+dfsg-10_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg-10) ... Selecting previously unselected package libldap-2.5-0:amd64. Preparing to unpack .../026-libldap-2.5-0_2.5.13+dfsg-5_amd64.deb ... Unpacking libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../027-libnghttp2-14_1.52.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.52.0-1) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../028-libpsl5_0.21.2-1_amd64.deb ... Unpacking libpsl5:amd64 (0.21.2-1) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../029-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:amd64. Preparing to unpack .../030-libssh2-1_1.10.0-3+b1_amd64.deb ... Unpacking libssh2-1:amd64 (1.10.0-3+b1) ... Selecting previously unselected package libcurl4:amd64. Preparing to unpack .../031-libcurl4_7.88.1-9_amd64.deb ... Unpacking libcurl4:amd64 (7.88.1-9) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../032-libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package libjsoncpp25:amd64. Preparing to unpack .../033-libjsoncpp25_1.9.5-4_amd64.deb ... Unpacking libjsoncpp25:amd64 (1.9.5-4) ... Selecting previously unselected package librhash0:amd64. Preparing to unpack .../034-librhash0_1.4.3-3_amd64.deb ... Unpacking librhash0:amd64 (1.4.3-3) ... Selecting previously unselected package libuv1:amd64. Preparing to unpack .../035-libuv1_1.44.2-1_amd64.deb ... Unpacking libuv1:amd64 (1.44.2-1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../036-cmake-data_3.25.1-1_all.deb ... Unpacking cmake-data (3.25.1-1) ... Selecting previously unselected package cmake. Preparing to unpack .../037-cmake_3.25.1-1_amd64.deb ... Unpacking cmake (3.25.1-1) ... Selecting previously unselected package dc. Preparing to unpack .../038-dc_1.07.1-3+b1_amd64.deb ... Unpacking dc (1.07.1-3+b1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../039-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../040-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../041-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../042-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../043-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../044-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../045-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../046-libelf1_0.188-2.1_amd64.deb ... Unpacking libelf1:amd64 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../047-dwz_0.15-1_amd64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package gettext. Preparing to unpack .../048-gettext_0.21-12_amd64.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../049-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../050-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. 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Not building database; man-db/auto-update is not 'true'. Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up libxfixes3:amd64 (1:6.0.0-2) ... Setting up libxrandr2:amd64 (2:1.5.2-2+b1) ... Setting up libxt6:amd64 (1:1.2.1-1.1) ... Setting up xauth (1:1.1.2-1) ... Setting up cmake (3.25.1-1) ... Setting up libxmu6:amd64 (2:1.1.3-3) ... Setting up libglx-mesa0:amd64 (22.3.6-1+deb12u1) ... Setting up libglx0:amd64 (1.6.0-1) ... Setting up debhelper (13.11.4) ... Setting up libxaw7:amd64 (2:1.0.14-1) ... Setting up libgl1:amd64 (1.6.0-1) ... Setting up x11-xkb-utils (7.7+7) ... Setting up xserver-common (2:21.1.7-3) ... Setting up xvfb (2:21.1.7-3) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/cmtk-3.3.1p2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../cmtk_3.3.1p2+dfsg-2_source.changes dpkg-buildpackage: info: source package cmtk dpkg-buildpackage: info: source version 3.3.1p2+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh: warning: invalid flag in DEB_BUILD_OPTIONS: " dh: warning: invalid flag in DEB_BUILD_OPTIONS: nocheck" debian/rules override_dh_auto_clean make[1]: Entering directory '/build/cmtk-3.3.1p2+dfsg' dh_auto_clean rm -rf debian/manpages make[1]: Leaving directory '/build/cmtk-3.3.1p2+dfsg' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/cmtk.substvars debian/files rm -fr -- debian/cmtk/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary dh binary dh: warning: invalid flag in DEB_BUILD_OPTIONS: " dh: warning: invalid flag in DEB_BUILD_OPTIONS: nocheck" dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/cmtk-3.3.1p2+dfsg' dh_auto_configure -- \ -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON \ -DBUILD_APPS:BOOL=ON \ -DBUILD_DOCUMENTATION:BOOL=OFF \ -DBUILD_GUI:BOOL=OFF \ -DBUILD_SHARED_LIBS:BOOL=ON \ -DBUILD_TESTING:BOOL=OFF \ -DCMTK_BUILD_DCMTK:BOOL=OFF \ -DCMTK_BUILD_MXML:BOOL=OFF \ -DCMTK_BUILD_NRRD:BOOL=ON \ -DCMTK_BUILD_SQLITE:BOOL=OFF \ -DCMTK_BUILD_ZLIB:BOOL=OFF \ -DCMTK_ROOT_PATH_SRI24:PATH=/usr/share/data/sri24-atlas \ -DCMTK_USE_DCMTK:BOOL=ON \ -DCMTK_USE_FFTW:BOOL=ON \ -DCMTK_USE_QT:BOOL=OFF \ -DCMTK_USE_SMP:BOOL=ON \ -DCMTK_USE_SQLITE:BOOL=ON \ -DDART_TESTING_TIMEOUT:STRING=15000 \ -DMXML_INCLUDE_DIR:PATH=/usr/include \ -DLZMA_INCLUDE_DIRS:PATH=/usr/include/lzma \ -DCMAKE_SKIP_RPATH:BOOL=OFF \ -DCMTK_BUILD_WRAPPER:BOOL=ON \ cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DBUILD_APPS:BOOL=ON -DBUILD_DOCUMENTATION:BOOL=OFF -DBUILD_GUI:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=OFF -DCMTK_BUILD_DCMTK:BOOL=OFF -DCMTK_BUILD_MXML:BOOL=OFF -DCMTK_BUILD_NRRD:BOOL=ON -DCMTK_BUILD_SQLITE:BOOL=OFF -DCMTK_BUILD_ZLIB:BOOL=OFF -DCMTK_ROOT_PATH_SRI24:PATH=/usr/share/data/sri24-atlas -DCMTK_USE_DCMTK:BOOL=ON -DCMTK_USE_FFTW:BOOL=ON -DCMTK_USE_QT:BOOL=OFF -DCMTK_USE_SMP:BOOL=ON -DCMTK_USE_SQLITE:BOOL=ON -DDART_TESTING_TIMEOUT:STRING=15000 -DMXML_INCLUDE_DIR:PATH=/usr/include -DLZMA_INCLUDE_DIRS:PATH=/usr/include/lzma -DCMAKE_SKIP_RPATH:BOOL=OFF -DCMTK_BUILD_WRAPPER:BOOL=ON .. CMake Deprecation Warning at CMakeLists.txt:38 (CMAKE_MINIMUM_REQUIRED): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 12.2.0 -- The CXX compiler identification is GNU 12.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of int -- Check size of int - done -- Check size of long -- Check size of long - done -- Check size of void* -- Check size of void* - done -- Check size of char -- Check size of char - done -- Check size of short -- Check size of short - done -- Check size of float -- Check size of float - done -- Check size of double -- Check size of double - done -- Looking for limits.h -- Looking for limits.h - found -- Looking for unistd.h -- Looking for unistd.h - found -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for include files sys/types.h, sys/prctl.h -- Looking for include files sys/types.h, sys/prctl.h - found -- Could NOT find X11 (missing: X11_X11_INCLUDE_PATH X11_X11_LIB) -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for C++ include iostream -- Looking for C++ include iostream - found -- Check for STD namespace -- Check for STD namespace - found -- Check for ANSI scope -- Check for ANSI scope - found -- Check for sstream -- Check for sstream - found -- System is Linux-6.1.0-0.deb11.6-amd64 -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file execinfo.h -- Looking for include file execinfo.h - found -- Looking for include file fcntl.h -- Looking for include file fcntl.h - found -- Looking for include file ieeefp.h -- Looking for include file ieeefp.h - not found -- Looking for include file inttypes.h -- Looking for include file inttypes.h - found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Looking for include file pthread.h -- Looking for include file pthread.h - found -- Looking for include file termios.h -- Looking for include file termios.h - found -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file values.h -- Looking for include file values.h - found -- Looking for include file sys/ioctl.h -- Looking for include file sys/ioctl.h - found -- Looking for include file sys/procfs.h -- Looking for include file sys/procfs.h - found -- Looking for include file sys/stat.h -- Looking for include file sys/stat.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file sys/times.h -- Looking for include file sys/times.h - found -- Looking for include file sys/utsname.h -- Looking for include file sys/utsname.h - found -- Check size of ((struct stat*)0)->st_mode -- Check size of ((struct stat*)0)->st_mode - done -- Check size of struct stat64 -- Check size of struct stat64 - failed -- Check the value of the 22nd bit of a 32-bit quiet-NaN -- Check the value of the 22nd bit of a 32-bit quiet-NaN - 1 -- Looking for C++ include unordered_map -- Looking for C++ include unordered_map - found -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Looking for include file dispatch/dispatch.h -- Looking for include file dispatch/dispatch.h - not found -- Performing Test CMTK_COMPILER_VAR_AUTO_ARRAYSIZE -- Performing Test CMTK_COMPILER_VAR_AUTO_ARRAYSIZE - Success -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.13") -- Using system zlib -- Building bundled mxml due to outdated or broken system mxml (minimum version required is 2.7, version 2.8 is broken; installed version is 0.0) -- Found BZip2: /usr/lib/x86_64-linux-gnu/libbz2.so (found version "1.0.8") -- Looking for BZ2_bzCompressInit -- Looking for BZ2_bzCompressInit - found -- Found system libbz2 -- Could NOT find LZMA (missing: LZMA_LIBRARIES LZMA_INCLUDE_DIRS) -- Found DCMTK: /usr/include/dcmtk/config -- - tested library png -- - tested library tiff -- - tested library CharLS -- Using system DCMTK library. -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) -- Found SQLite3: /usr/lib/x86_64-linux-gnu/libsqlite3.so -- Using system sqlite3 library CMake Deprecation Warning at Utilities/NrrdIO/CMakeLists.txt:31 (CMAKE_MINIMUM_REQUIRED): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Check size of long long -- Check size of long long - done -- Looking for strdup -- Looking for strdup - found -- Looking for snprintf -- Looking for snprintf - found -- Looking for vsnprintf -- Looking for vsnprintf - found CMake Warning (dev) at CMakeLists.txt:698 (EXPORT_LIBRARY_DEPENDENCIES): Policy CMP0033 is not set: The export_library_dependencies command should not be called. Run "cmake --help-policy CMP0033" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Configuring done CMake Warning (dev) at libs/System/CMakeLists.txt:77 (ADD_LIBRARY): Policy CMP0115 is not set: Source file extensions must be explicit. Run "cmake --help-policy CMP0115" for policy details. Use the cmake_policy command to set the policy and suppress this warning. File: /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkStackBacktrace.cxx This warning is for project developers. Use -Wno-dev to suppress it. -- Generating done CMake Warning: Manually-specified variables were not used by the project: BUILD_DOCUMENTATION CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR DART_TESTING_TIMEOUT FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/cmtk-3.3.1p2+dfsg' dh_auto_build cd obj-x86_64-linux-gnu && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/cmtk-3.3.1p2+dfsg -B/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/CMakeFiles /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/build.make Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/depend make -f Utilities/mxml/CMakeFiles/cmtkMxml.dir/build.make Utilities/mxml/CMakeFiles/cmtkMxml.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/Utilities/mxml /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml/CMakeFiles/cmtkMxml.dir/DependInfo.cmake --color= make -f libs/Numerics/CMakeFiles/cmtkNumerics.dir/build.make libs/Numerics/CMakeFiles/cmtkNumerics.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/libs/Numerics /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics/CMakeFiles/cmtkNumerics.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/build.make Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f Utilities/mxml/CMakeFiles/cmtkMxml.dir/build.make Utilities/mxml/CMakeFiles/cmtkMxml.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f libs/Numerics/CMakeFiles/cmtkNumerics.dir/build.make libs/Numerics/CMakeFiles/cmtkNumerics.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 0%] Building C object Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-attr.c.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkMxml_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-attr.c.o -MF CMakeFiles/cmtkMxml.dir/mxml-attr.c.o.d -o CMakeFiles/cmtkMxml.dir/mxml-attr.c.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/mxml/mxml-attr.c [ 0%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/comment.o [ 0%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/enumsNrrd.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/comment.o -MF CMakeFiles/NrrdIO.dir/comment.o.d -o CMakeFiles/NrrdIO.dir/comment.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/comment.c [ 0%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/mop.o [ 1%] Building C object Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-entity.c.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/enumsNrrd.o -MF CMakeFiles/NrrdIO.dir/enumsNrrd.o.d -o CMakeFiles/NrrdIO.dir/enumsNrrd.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/enumsNrrd.c [ 1%] Building C object Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-index.c.o [ 1%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/parseAir.o [ 2%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/ap.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/mop.o -MF CMakeFiles/NrrdIO.dir/mop.o.d -o CMakeFiles/NrrdIO.dir/mop.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/mop.c [ 2%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/bdsvd.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkMxml_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-entity.c.o -MF CMakeFiles/cmtkMxml.dir/mxml-entity.c.o.d -o CMakeFiles/cmtkMxml.dir/mxml-entity.c.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/mxml/mxml-entity.c [ 2%] Building C object Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-private.c.o [ 3%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/defaultsNrrd.o [ 3%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/string.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkMxml_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-index.c.o -MF CMakeFiles/cmtkMxml.dir/mxml-index.c.o.d -o CMakeFiles/cmtkMxml.dir/mxml-index.c.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/mxml/mxml-index.c cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/ap.cxx.o -MF CMakeFiles/cmtkNumerics.dir/ap.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/ap.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/ap.cxx cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkMxml_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-private.c.o -MF CMakeFiles/cmtkMxml.dir/mxml-private.c.o.d -o CMakeFiles/cmtkMxml.dir/mxml-private.c.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/mxml/mxml-private.c cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/defaultsNrrd.o -MF CMakeFiles/NrrdIO.dir/defaultsNrrd.o.d -o CMakeFiles/NrrdIO.dir/defaultsNrrd.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/defaultsNrrd.c cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/bdsvd.cxx.o -MF CMakeFiles/cmtkNumerics.dir/bdsvd.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/bdsvd.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/bdsvd.cxx [ 3%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/bidiagonal.cxx.o [ 3%] Building C object Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-get.c.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/string.o -MF CMakeFiles/NrrdIO.dir/string.o.d -o CMakeFiles/NrrdIO.dir/string.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/string.c [ 3%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/754.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkMxml_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-get.c.o -MF CMakeFiles/cmtkMxml.dir/mxml-get.c.o.d -o CMakeFiles/cmtkMxml.dir/mxml-get.c.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/mxml/mxml-get.c cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/bidiagonal.cxx.o -MF CMakeFiles/cmtkNumerics.dir/bidiagonal.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/bidiagonal.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/bidiagonal.cxx [ 3%] Building C object Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-set.c.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/parseAir.o -MF CMakeFiles/NrrdIO.dir/parseAir.o.d -o CMakeFiles/NrrdIO.dir/parseAir.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/parseAir.c cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/754.o -MF CMakeFiles/NrrdIO.dir/754.o.d -o CMakeFiles/NrrdIO.dir/754.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/754.c cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkMxml_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-set.c.o -MF CMakeFiles/cmtkMxml.dir/mxml-set.c.o.d -o CMakeFiles/cmtkMxml.dir/mxml-set.c.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/mxml/mxml-set.c [ 3%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/dio.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/dio.o -MF CMakeFiles/NrrdIO.dir/dio.o.d -o CMakeFiles/NrrdIO.dir/dio.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/dio.c [ 4%] Building C object Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-file.c.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkMxml_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-file.c.o -MF CMakeFiles/cmtkMxml.dir/mxml-file.c.o.d -o CMakeFiles/cmtkMxml.dir/mxml-file.c.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/mxml/mxml-file.c [ 4%] Building C object Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-node.c.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkMxml_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-node.c.o -MF CMakeFiles/cmtkMxml.dir/mxml-node.c.o.d -o CMakeFiles/cmtkMxml.dir/mxml-node.c.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/mxml/mxml-node.c [ 4%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/format.o [ 4%] Building C object Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-search.c.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/format.o -MF CMakeFiles/NrrdIO.dir/format.o.d -o CMakeFiles/NrrdIO.dir/format.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/format.c cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkMxml_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-search.c.o -MF CMakeFiles/cmtkMxml.dir/mxml-search.c.o.d -o CMakeFiles/cmtkMxml.dir/mxml-search.c.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/mxml/mxml-search.c [ 4%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/parseNrrd.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/parseNrrd.o -MF CMakeFiles/NrrdIO.dir/parseNrrd.o.d -o CMakeFiles/NrrdIO.dir/parseNrrd.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/parseNrrd.c [ 4%] Building C object Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-string.c.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkMxml_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/mxml/CMakeFiles/cmtkMxml.dir/mxml-string.c.o -MF CMakeFiles/cmtkMxml.dir/mxml-string.c.o.d -o CMakeFiles/cmtkMxml.dir/mxml-string.c.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/mxml/mxml-string.c [ 5%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/formatEPS.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/formatEPS.o -MF CMakeFiles/NrrdIO.dir/formatEPS.o.d -o CMakeFiles/NrrdIO.dir/formatEPS.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/formatEPS.c [ 5%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/encoding.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/encoding.o -MF CMakeFiles/NrrdIO.dir/encoding.o.d -o CMakeFiles/NrrdIO.dir/encoding.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/encoding.c [ 5%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/formatNRRD.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/formatNRRD.o -MF CMakeFiles/NrrdIO.dir/formatNRRD.o.d -o CMakeFiles/NrrdIO.dir/formatNRRD.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/formatNRRD.c [ 5%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/encodingAscii.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/encodingAscii.o -MF CMakeFiles/NrrdIO.dir/encodingAscii.o.d -o CMakeFiles/NrrdIO.dir/encodingAscii.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/encodingAscii.c [ 5%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/blas.cxx.o [ 5%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/formatPNG.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/formatPNG.o -MF CMakeFiles/NrrdIO.dir/formatPNG.o.d -o CMakeFiles/NrrdIO.dir/formatPNG.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/formatPNG.c cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/blas.cxx.o -MF CMakeFiles/cmtkNumerics.dir/blas.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/blas.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/blas.cxx [ 5%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/cholesky.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/cholesky.cxx.o -MF CMakeFiles/cmtkNumerics.dir/cholesky.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/cholesky.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/cholesky.cxx [ 6%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/encodingBzip2.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/encodingBzip2.o -MF CMakeFiles/NrrdIO.dir/encodingBzip2.o.d -o CMakeFiles/NrrdIO.dir/encodingBzip2.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/encodingBzip2.c [ 6%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/formatPNM.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/formatPNM.o -MF CMakeFiles/NrrdIO.dir/formatPNM.o.d -o CMakeFiles/NrrdIO.dir/formatPNM.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/formatPNM.c [ 6%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/accessors.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/accessors.o -MF CMakeFiles/NrrdIO.dir/accessors.o.d -o CMakeFiles/NrrdIO.dir/accessors.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/accessors.c [ 6%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/encodingGzip.o [ 7%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/det.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/encodingGzip.o -MF CMakeFiles/NrrdIO.dir/encodingGzip.o.d -o CMakeFiles/NrrdIO.dir/encodingGzip.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/encodingGzip.c cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/det.cxx.o -MF CMakeFiles/cmtkNumerics.dir/det.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/det.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/det.cxx [ 7%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/formatText.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/formatText.o -MF CMakeFiles/NrrdIO.dir/formatText.o.d -o CMakeFiles/NrrdIO.dir/formatText.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/formatText.c [ 8%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/array.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/array.o -MF CMakeFiles/NrrdIO.dir/array.o.d -o CMakeFiles/NrrdIO.dir/array.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/array.c [ 8%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/encodingHex.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/encodingHex.o -MF CMakeFiles/NrrdIO.dir/encodingHex.o.d -o CMakeFiles/NrrdIO.dir/encodingHex.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/encodingHex.c [ 8%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/formatVTK.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/formatVTK.o -MF CMakeFiles/NrrdIO.dir/formatVTK.o.d -o CMakeFiles/NrrdIO.dir/formatVTK.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/formatVTK.c [ 8%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/read.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/read.o -MF CMakeFiles/NrrdIO.dir/read.o.d -o CMakeFiles/NrrdIO.dir/read.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/read.c [ 8%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/arraysNrrd.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/arraysNrrd.o -MF CMakeFiles/NrrdIO.dir/arraysNrrd.o.d -o CMakeFiles/NrrdIO.dir/arraysNrrd.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/arraysNrrd.c [ 9%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/encodingRaw.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/encodingRaw.o -MF CMakeFiles/NrrdIO.dir/encodingRaw.o.d -o CMakeFiles/NrrdIO.dir/encodingRaw.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/encodingRaw.c [ 9%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/gzio.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/gzio.o -MF CMakeFiles/NrrdIO.dir/gzio.o.d -o CMakeFiles/NrrdIO.dir/gzio.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/gzio.c [ 9%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/reorder.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/reorder.o -MF CMakeFiles/NrrdIO.dir/reorder.o.d -o CMakeFiles/NrrdIO.dir/reorder.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/reorder.c [ 9%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/write.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/write.o -MF CMakeFiles/NrrdIO.dir/write.o.d -o CMakeFiles/NrrdIO.dir/write.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/write.c [ 9%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/axis.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/axis.o -MF CMakeFiles/NrrdIO.dir/axis.o.d -o CMakeFiles/NrrdIO.dir/axis.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/axis.c [ 10%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/endianAir.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/endianAir.o -MF CMakeFiles/NrrdIO.dir/endianAir.o.d -o CMakeFiles/NrrdIO.dir/endianAir.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/endianAir.c [ 10%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/keyvalue.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/keyvalue.o -MF CMakeFiles/NrrdIO.dir/keyvalue.o.d -o CMakeFiles/NrrdIO.dir/keyvalue.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/keyvalue.c [ 10%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/biffbiff.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/biffbiff.o -MF CMakeFiles/NrrdIO.dir/biffbiff.o.d -o CMakeFiles/NrrdIO.dir/biffbiff.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/biffbiff.c [ 10%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/biffmsg.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/biffmsg.o -MF CMakeFiles/NrrdIO.dir/biffmsg.o.d -o CMakeFiles/NrrdIO.dir/biffmsg.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/biffmsg.c [ 10%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/endianNrrd.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/endianNrrd.o -MF CMakeFiles/NrrdIO.dir/endianNrrd.o.d -o CMakeFiles/NrrdIO.dir/endianNrrd.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/endianNrrd.c [ 11%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/methodsNrrd.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/methodsNrrd.o -MF CMakeFiles/NrrdIO.dir/methodsNrrd.o.d -o CMakeFiles/NrrdIO.dir/methodsNrrd.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/methodsNrrd.c [ 11%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/sane.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/sane.o -MF CMakeFiles/NrrdIO.dir/sane.o.d -o CMakeFiles/NrrdIO.dir/sane.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/sane.c [ 11%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/enum.o [ 11%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/miscAir.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/enum.o -MF CMakeFiles/NrrdIO.dir/enum.o.d -o CMakeFiles/NrrdIO.dir/enum.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/enum.c cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/miscAir.o -MF CMakeFiles/NrrdIO.dir/miscAir.o.d -o CMakeFiles/NrrdIO.dir/miscAir.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/miscAir.c [ 11%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/gammaf.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/gammaf.cxx.o -MF CMakeFiles/cmtkNumerics.dir/gammaf.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/gammaf.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/gammaf.cxx [ 11%] Building C object Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/simple.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DNrrdIO_EXPORTS -DTEEM_BUILD=1 -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -DTEEM_ZLIB -DTEEM_ZLIB=1 -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT Utilities/NrrdIO/CMakeFiles/NrrdIO.dir/simple.o -MF CMakeFiles/NrrdIO.dir/simple.o.d -o CMakeFiles/NrrdIO.dir/simple.o -c /build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO/simple.c [ 11%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/hessenberg.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/hessenberg.cxx.o -MF CMakeFiles/cmtkNumerics.dir/hessenberg.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/hessenberg.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/hessenberg.cxx [ 11%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/hsschur.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/hsschur.cxx.o -MF CMakeFiles/cmtkNumerics.dir/hsschur.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/hsschur.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/hsschur.cxx [ 11%] Linking C shared library ../../bin/libcmtkMxml.so cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/mxml && /usr/bin/cmake -E cmake_link_script CMakeFiles/cmtkMxml.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,libcmtkMxml.so -o ../../bin/libcmtkMxml.so "CMakeFiles/cmtkMxml.dir/mxml-attr.c.o" "CMakeFiles/cmtkMxml.dir/mxml-entity.c.o" "CMakeFiles/cmtkMxml.dir/mxml-index.c.o" "CMakeFiles/cmtkMxml.dir/mxml-private.c.o" "CMakeFiles/cmtkMxml.dir/mxml-get.c.o" "CMakeFiles/cmtkMxml.dir/mxml-set.c.o" "CMakeFiles/cmtkMxml.dir/mxml-file.c.o" "CMakeFiles/cmtkMxml.dir/mxml-node.c.o" "CMakeFiles/cmtkMxml.dir/mxml-search.c.o" "CMakeFiles/cmtkMxml.dir/mxml-string.c.o" [ 11%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/ibetaf.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/ibetaf.cxx.o -MF CMakeFiles/cmtkNumerics.dir/ibetaf.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/ibetaf.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/ibetaf.cxx [ 12%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/lbfgsb.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/lbfgsb.cxx.o -MF CMakeFiles/cmtkNumerics.dir/lbfgsb.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/lbfgsb.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/lbfgsb.cxx make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 12%] Built target cmtkMxml make -f libs/System/CMakeFiles/cmtkSystem.dir/build.make libs/System/CMakeFiles/cmtkSystem.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/libs/System /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System/CMakeFiles/cmtkSystem.dir/DependInfo.cmake --color= [ 12%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/lq.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/lq.cxx.o -MF CMakeFiles/cmtkNumerics.dir/lq.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/lq.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/lq.cxx make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f libs/System/CMakeFiles/cmtkSystem.dir/build.make libs/System/CMakeFiles/cmtkSystem.dir/build [ 12%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/lu.cxx.o make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/lu.cxx.o -MF CMakeFiles/cmtkNumerics.dir/lu.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/lu.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/lu.cxx [ 12%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLine.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLine.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkCommandLine.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkCommandLine.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkCommandLine.cxx [ 12%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineCallback.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineCallback.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkCommandLineCallback.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkCommandLineCallback.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkCommandLineCallback.cxx [ 12%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/normaldistr.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/normaldistr.cxx.o -MF CMakeFiles/cmtkNumerics.dir/normaldistr.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/normaldistr.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/normaldistr.cxx [ 12%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/nsevd.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/nsevd.cxx.o -MF CMakeFiles/cmtkNumerics.dir/nsevd.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/nsevd.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/nsevd.cxx [ 13%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/qr.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/qr.cxx.o -MF CMakeFiles/cmtkNumerics.dir/qr.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/qr.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/qr.cxx [ 13%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/reflections.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/reflections.cxx.o -MF CMakeFiles/cmtkNumerics.dir/reflections.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/reflections.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/reflections.cxx [ 13%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/rotations.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/rotations.cxx.o -MF CMakeFiles/cmtkNumerics.dir/rotations.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/rotations.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/rotations.cxx [ 14%] Linking C shared library ../../bin/libNrrdIO.so cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO && /usr/bin/cmake -E cmake_link_script CMakeFiles/NrrdIO.dir/link.txt --verbose=1 [ 14%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/sblas.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/sblas.cxx.o -MF CMakeFiles/cmtkNumerics.dir/sblas.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/sblas.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/sblas.cxx /usr/bin/cc -fPIC -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,libNrrdIO.so -o ../../bin/libNrrdIO.so CMakeFiles/NrrdIO.dir/comment.o CMakeFiles/NrrdIO.dir/enumsNrrd.o CMakeFiles/NrrdIO.dir/mop.o CMakeFiles/NrrdIO.dir/string.o CMakeFiles/NrrdIO.dir/754.o CMakeFiles/NrrdIO.dir/defaultsNrrd.o CMakeFiles/NrrdIO.dir/parseAir.o CMakeFiles/NrrdIO.dir/dio.o CMakeFiles/NrrdIO.dir/format.o CMakeFiles/NrrdIO.dir/parseNrrd.o CMakeFiles/NrrdIO.dir/formatEPS.o CMakeFiles/NrrdIO.dir/encoding.o CMakeFiles/NrrdIO.dir/formatNRRD.o CMakeFiles/NrrdIO.dir/encodingAscii.o CMakeFiles/NrrdIO.dir/formatPNG.o CMakeFiles/NrrdIO.dir/encodingBzip2.o CMakeFiles/NrrdIO.dir/formatPNM.o CMakeFiles/NrrdIO.dir/accessors.o CMakeFiles/NrrdIO.dir/encodingGzip.o CMakeFiles/NrrdIO.dir/formatText.o CMakeFiles/NrrdIO.dir/array.o CMakeFiles/NrrdIO.dir/encodingHex.o CMakeFiles/NrrdIO.dir/formatVTK.o CMakeFiles/NrrdIO.dir/read.o CMakeFiles/NrrdIO.dir/arraysNrrd.o CMakeFiles/NrrdIO.dir/encodingRaw.o CMakeFiles/NrrdIO.dir/gzio.o CMakeFiles/NrrdIO.dir/reorder.o CMakeFiles/NrrdIO.dir/write.o CMakeFiles/NrrdIO.dir/axis.o CMakeFiles/NrrdIO.dir/endianAir.o CMakeFiles/NrrdIO.dir/keyvalue.o CMakeFiles/NrrdIO.dir/biffbiff.o CMakeFiles/NrrdIO.dir/biffmsg.o CMakeFiles/NrrdIO.dir/endianNrrd.o CMakeFiles/NrrdIO.dir/methodsNrrd.o CMakeFiles/NrrdIO.dir/sane.o CMakeFiles/NrrdIO.dir/enum.o CMakeFiles/NrrdIO.dir/miscAir.o CMakeFiles/NrrdIO.dir/simple.o -lz make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 14%] Built target NrrdIO [ 15%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineItem.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineItem.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkCommandLineItem.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkCommandLineItem.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkCommandLineItem.cxx [ 15%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/sevd.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/sevd.cxx.o -MF CMakeFiles/cmtkNumerics.dir/sevd.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/sevd.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/sevd.cxx [ 15%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/spddet.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/spddet.cxx.o -MF CMakeFiles/cmtkNumerics.dir/spddet.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/spddet.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/spddet.cxx [ 16%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/studenttdistr.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/studenttdistr.cxx.o -MF CMakeFiles/cmtkNumerics.dir/studenttdistr.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/studenttdistr.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/studenttdistr.cxx [ 16%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/studentttests.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/studentttests.cxx.o -MF CMakeFiles/cmtkNumerics.dir/studentttests.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/studentttests.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/studentttests.cxx [ 16%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/svd.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/svd.cxx.o -MF CMakeFiles/cmtkNumerics.dir/svd.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/svd.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/svd.cxx [ 16%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/tdevd.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/tdevd.cxx.o -MF CMakeFiles/cmtkNumerics.dir/tdevd.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/tdevd.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/tdevd.cxx [ 16%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/tridiagonal.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/tridiagonal.cxx.o -MF CMakeFiles/cmtkNumerics.dir/tridiagonal.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/tridiagonal.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/tridiagonal.cxx [ 17%] Building CXX object libs/Numerics/CMakeFiles/cmtkNumerics.dir/mersenne.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkNumerics_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Numerics/CMakeFiles/cmtkNumerics.dir/mersenne.cxx.o -MF CMakeFiles/cmtkNumerics.dir/mersenne.cxx.o.d -o CMakeFiles/cmtkNumerics.dir/mersenne.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Numerics/mersenne.cxx [ 17%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineKeyToAction.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineKeyToAction.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkCommandLineKeyToAction.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkCommandLineKeyToAction.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkCommandLineKeyToAction.cxx [ 17%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineKeyToActionEnum.cxx.o [ 17%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineKeyToActionSingle.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineKeyToActionSingle.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkCommandLineKeyToActionSingle.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkCommandLineKeyToActionSingle.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkCommandLineKeyToActionSingle.cxx cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineKeyToActionEnum.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkCommandLineKeyToActionEnum.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkCommandLineKeyToActionEnum.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkCommandLineKeyToActionEnum.cxx [ 17%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineNonOptionParameter.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineNonOptionParameter.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkCommandLineNonOptionParameter.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkCommandLineNonOptionParameter.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkCommandLineNonOptionParameter.cxx [ 18%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineNonOptionParameterVector.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineNonOptionParameterVector.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkCommandLineNonOptionParameterVector.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkCommandLineNonOptionParameterVector.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkCommandLineNonOptionParameterVector.cxx [ 18%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineHelp.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineHelp.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkCommandLineHelp.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkCommandLineHelp.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkCommandLineHelp.cxx [ 18%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineMan.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineMan.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkCommandLineMan.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkCommandLineMan.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkCommandLineMan.cxx /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkCommandLineMan.cxx:61:45: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 61 | StdOut << ".TH " << cmd << " \"1\" \"" << __DATE__ << "\" \"CMTK " << ppit->second << "\" \"The Computational Morphometry Toolkit\"\n"; | ^~~~~~~~ [ 18%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineXML.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineXML.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkCommandLineXML.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkCommandLineXML.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkCommandLineXML.cxx [ 18%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineWiki.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkCommandLineWiki.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkCommandLineWiki.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkCommandLineWiki.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkCommandLineWiki.cxx [ 19%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCompressedStream.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkCompressedStream.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkCompressedStream.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkCompressedStream.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkCompressedStream.cxx [ 19%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCompressedStreamFile.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkCompressedStreamFile.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkCompressedStreamFile.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkCompressedStreamFile.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkCompressedStreamFile.cxx [ 19%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCompressedStreamPipe.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkCompressedStreamPipe.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkCompressedStreamPipe.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkCompressedStreamPipe.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkCompressedStreamPipe.cxx [ 19%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCompressedStreamReaderBase.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkCompressedStreamReaderBase.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkCompressedStreamReaderBase.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkCompressedStreamReaderBase.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkCompressedStreamReaderBase.cxx [ 19%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCompressedStreamZlib.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkCompressedStreamZlib.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkCompressedStreamZlib.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkCompressedStreamZlib.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkCompressedStreamZlib.cxx [ 19%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkConsole.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkConsole.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkConsole.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkConsole.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkConsole.cxx [ 20%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkFileUtils.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkFileUtils.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkFileUtils.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkFileUtils.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkFileUtils.cxx [ 20%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkMemory.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkMemory.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkMemory.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkMemory.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkMemory.cxx [ 20%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkMountPoints.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkMountPoints.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkMountPoints.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkMountPoints.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkMountPoints.cxx [ 20%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkProgress.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkProgress.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkProgress.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkProgress.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkProgress.cxx [ 20%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkProgressConsole.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkProgressConsole.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkProgressConsole.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkProgressConsole.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkProgressConsole.cxx [ 21%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkRegressionTracker.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkRegressionTracker.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkRegressionTracker.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkRegressionTracker.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkRegressionTracker.cxx [ 21%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkStackBacktrace.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkStackBacktrace.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkStackBacktrace.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkStackBacktrace.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkStackBacktrace.cxx [ 21%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkStrUtility.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkStrUtility.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkStrUtility.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkStrUtility.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkStrUtility.cxx [ 21%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkThreads.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkThreads.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkThreads.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkThreads.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkThreads.cxx [ 21%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkThreadPoolThreads.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkThreadPoolThreads.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkThreadPoolThreads.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkThreadPoolThreads.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkThreadPoolThreads.cxx [ 22%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkThreadSemaphore.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkThreadSemaphore.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkThreadSemaphore.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkThreadSemaphore.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkThreadSemaphore.cxx [ 22%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkTimers.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkTimers.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkTimers.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkTimers.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkTimers.cxx [ 22%] Building CXX object libs/System/CMakeFiles/cmtkSystem.dir/cmtkCompressedStreamBZip2.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSystem_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/System/CMakeFiles/cmtkSystem.dir/cmtkCompressedStreamBZip2.cxx.o -MF CMakeFiles/cmtkSystem.dir/cmtkCompressedStreamBZip2.cxx.o.d -o CMakeFiles/cmtkSystem.dir/cmtkCompressedStreamBZip2.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkCompressedStreamBZip2.cxx /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkFileUtils.cxx: In function 'std::string cmtk::FileUtils::GetAbsolutePath(const std::string&)': /build/cmtk-3.3.1p2+dfsg/libs/System/cmtkFileUtils.cxx:147:11: warning: ignoring return value of 'char* getcwd(char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 147 | getcwd( absPath, PATH_MAX ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~ [ 22%] Linking CXX shared library ../../bin/libcmtkSystem.so cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/System && /usr/bin/cmake -E cmake_link_script CMakeFiles/cmtkSystem.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -shared -Wl,-soname,libcmtkSystem.so -o ../../bin/libcmtkSystem.so CMakeFiles/cmtkSystem.dir/cmtkCommandLine.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCommandLineCallback.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCommandLineItem.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCommandLineKeyToAction.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCommandLineKeyToActionEnum.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCommandLineKeyToActionSingle.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCommandLineNonOptionParameter.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCommandLineNonOptionParameterVector.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCommandLineHelp.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCommandLineMan.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCommandLineXML.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCommandLineWiki.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCompressedStream.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCompressedStreamFile.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCompressedStreamPipe.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCompressedStreamReaderBase.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCompressedStreamZlib.cxx.o CMakeFiles/cmtkSystem.dir/cmtkConsole.cxx.o CMakeFiles/cmtkSystem.dir/cmtkFileUtils.cxx.o CMakeFiles/cmtkSystem.dir/cmtkMemory.cxx.o CMakeFiles/cmtkSystem.dir/cmtkMountPoints.cxx.o CMakeFiles/cmtkSystem.dir/cmtkProgress.cxx.o CMakeFiles/cmtkSystem.dir/cmtkProgressConsole.cxx.o CMakeFiles/cmtkSystem.dir/cmtkRegressionTracker.cxx.o CMakeFiles/cmtkSystem.dir/cmtkStackBacktrace.cxx.o CMakeFiles/cmtkSystem.dir/cmtkStrUtility.cxx.o CMakeFiles/cmtkSystem.dir/cmtkThreads.cxx.o CMakeFiles/cmtkSystem.dir/cmtkThreadPoolThreads.cxx.o CMakeFiles/cmtkSystem.dir/cmtkThreadSemaphore.cxx.o CMakeFiles/cmtkSystem.dir/cmtkTimers.cxx.o CMakeFiles/cmtkSystem.dir/cmtkCompressedStreamBZip2.cxx.o -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: -lbz2 -lz ../../bin/libcmtkMxml.so -lfftw3_omp -lfftw3 -lfftw3_threads [ 22%] Linking CXX shared library ../../bin/libcmtkNumerics.so cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Numerics && /usr/bin/cmake -E cmake_link_script CMakeFiles/cmtkNumerics.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -shared -Wl,-soname,libcmtkNumerics.so -o ../../bin/libcmtkNumerics.so CMakeFiles/cmtkNumerics.dir/ap.cxx.o CMakeFiles/cmtkNumerics.dir/bdsvd.cxx.o CMakeFiles/cmtkNumerics.dir/bidiagonal.cxx.o CMakeFiles/cmtkNumerics.dir/blas.cxx.o CMakeFiles/cmtkNumerics.dir/cholesky.cxx.o CMakeFiles/cmtkNumerics.dir/det.cxx.o CMakeFiles/cmtkNumerics.dir/gammaf.cxx.o CMakeFiles/cmtkNumerics.dir/hessenberg.cxx.o CMakeFiles/cmtkNumerics.dir/hsschur.cxx.o CMakeFiles/cmtkNumerics.dir/ibetaf.cxx.o CMakeFiles/cmtkNumerics.dir/lbfgsb.cxx.o CMakeFiles/cmtkNumerics.dir/lq.cxx.o CMakeFiles/cmtkNumerics.dir/lu.cxx.o CMakeFiles/cmtkNumerics.dir/normaldistr.cxx.o CMakeFiles/cmtkNumerics.dir/nsevd.cxx.o CMakeFiles/cmtkNumerics.dir/qr.cxx.o CMakeFiles/cmtkNumerics.dir/reflections.cxx.o CMakeFiles/cmtkNumerics.dir/rotations.cxx.o CMakeFiles/cmtkNumerics.dir/sblas.cxx.o CMakeFiles/cmtkNumerics.dir/sevd.cxx.o CMakeFiles/cmtkNumerics.dir/spddet.cxx.o CMakeFiles/cmtkNumerics.dir/studenttdistr.cxx.o CMakeFiles/cmtkNumerics.dir/studentttests.cxx.o CMakeFiles/cmtkNumerics.dir/svd.cxx.o CMakeFiles/cmtkNumerics.dir/tdevd.cxx.o CMakeFiles/cmtkNumerics.dir/tridiagonal.cxx.o CMakeFiles/cmtkNumerics.dir/mersenne.cxx.o -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,::::::::::::: make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 22%] Built target cmtkSystem make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 22%] Built target cmtkNumerics make -f libs/Base/CMakeFiles/cmtkBase.dir/build.make libs/Base/CMakeFiles/cmtkBase.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/libs/Base /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base/CMakeFiles/cmtkBase.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f libs/Base/CMakeFiles/cmtkBase.dir/build.make libs/Base/CMakeFiles/cmtkBase.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 22%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkActiveDeformationModel.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkActiveDeformationModel.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkActiveDeformationModel.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkActiveDeformationModel.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkActiveDeformationModel.cxx [ 23%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkAffineXform.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkAffineXform.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkAffineXform.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkAffineXform.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkAffineXform.cxx [ 23%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkActiveShapeModel.cxx.o [ 23%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkAnatomicalOrientation.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkActiveShapeModel.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkActiveShapeModel.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkActiveShapeModel.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkActiveShapeModel.cxx cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkAnatomicalOrientation.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkAnatomicalOrientation.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkAnatomicalOrientation.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkAnatomicalOrientation.cxx [ 23%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkAffineXformUniformVolume.cxx.o [ 23%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkAnatomicalOrientationBase.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkAffineXformUniformVolume.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkAffineXformUniformVolume.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkAffineXformUniformVolume.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkAffineXformUniformVolume.cxx cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkAnatomicalOrientationBase.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkAnatomicalOrientationBase.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkAnatomicalOrientationBase.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkAnatomicalOrientationBase.cxx [ 23%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkAnatomicalOrientationPermutationMatrix.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkAnatomicalOrientationPermutationMatrix.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkAnatomicalOrientationPermutationMatrix.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkAnatomicalOrientationPermutationMatrix.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkAnatomicalOrientationPermutationMatrix.cxx [ 23%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkBitVector.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkBitVector.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkBitVector.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkBitVector.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkBitVector.cxx [ 24%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkCompatibilityMatrix4x4.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkCompatibilityMatrix4x4.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkCompatibilityMatrix4x4.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkCompatibilityMatrix4x4.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkCompatibilityMatrix4x4.cxx [ 24%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkDataGrid.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkDataGrid.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkDataGrid.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkDataGrid.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkDataGrid.cxx [ 24%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkDataGrid_Crop.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkDataGrid_Crop.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkDataGrid_Crop.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkDataGrid_Crop.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkDataGrid_Crop.cxx [ 24%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkDataGridFilter.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkDataGridFilter.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkDataGridFilter.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkDataGridFilter.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkDataGridFilter.cxx [ 25%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkDataGridLocalCorrelation.cxx.o [ 25%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkDataGridConnectedComponents.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkDataGridLocalCorrelation.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkDataGridLocalCorrelation.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkDataGridLocalCorrelation.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkDataGridLocalCorrelation.cxx [ 25%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkDataGridMorphologicalOperators.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkDataGridConnectedComponents.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkDataGridConnectedComponents.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkDataGridConnectedComponents.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkDataGridConnectedComponents.cxx cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkDataGridMorphologicalOperators.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkDataGridMorphologicalOperators.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkDataGridMorphologicalOperators.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkDataGridMorphologicalOperators.cxx [ 25%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkDeformationField.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkDeformationField.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkDeformationField.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkDeformationField.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkDeformationField.cxx [ 25%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkDeformationField_Jacobian.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkDeformationField_Jacobian.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkDeformationField_Jacobian.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkDeformationField_Jacobian.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkDeformationField_Jacobian.cxx [ 25%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkDirectionSet.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkDirectionSet.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkDirectionSet.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkDirectionSet.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkDirectionSet.cxx In file included from /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkFixedSquareMatrix.h:254, from /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkMatrix4x4.h:38, from /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkCompatibilityMatrix4x4.h:38, from /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkCompatibilityMatrix4x4.cxx:33: /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkFixedSquareMatrix.txx: In constructor 'cmtk::CompatibilityMatrix4x4::CompatibilityMatrix4x4(const cmtk::CoordinateVector&, bool) [with T = double]': /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkFixedSquareMatrix.txx:286:9: warning: writing 128 bytes into a region of size 32 [-Wstringop-overflow=] 286 | memcpy( this->m_Matrix, other.m_Matrix, sizeof( this->m_Matrix ) ); | ^ /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkFixedSquareMatrix.h:177:29: note: destination object 'cmtk::FixedSquareMatrix<4, double>::m_Matrix' of size 32 177 | typename Self::ScalarType m_Matrix[NDIM][NDIM]; | ^~~~~~~~ [ 26%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkFilterVolume.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkFilterVolume.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkFilterVolume.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkFilterVolume.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkFilterVolume.cxx [ 26%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkFitAffineToLandmarks.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkFitAffineToLandmarks.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkFitAffineToLandmarks.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkFitAffineToLandmarks.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkFitAffineToLandmarks.cxx [ 26%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkFitAffineToWarpXform.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkFitAffineToWarpXform.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkFitAffineToWarpXform.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkFitAffineToWarpXform.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkFitAffineToWarpXform.cxx [ 26%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkFitAffineToXformList.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkFitAffineToXformList.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkFitAffineToXformList.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkFitAffineToXformList.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkFitAffineToXformList.cxx [ 26%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkFitPolynomialToLandmarks.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkFitPolynomialToLandmarks.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkFitPolynomialToLandmarks.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkFitPolynomialToLandmarks.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkFitPolynomialToLandmarks.cxx [ 27%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkFitRigidToLandmarks.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkFitRigidToLandmarks.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkFitRigidToLandmarks.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkFitRigidToLandmarks.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkFitRigidToLandmarks.cxx [ 27%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkFitSplineWarpToDeformationField.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkFitSplineWarpToDeformationField.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkFitSplineWarpToDeformationField.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkFitSplineWarpToDeformationField.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkFitSplineWarpToDeformationField.cxx [ 27%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkFitSplineWarpToLandmarks.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkFitSplineWarpToLandmarks.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkFitSplineWarpToLandmarks.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkFitSplineWarpToLandmarks.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkFitSplineWarpToLandmarks.cxx [ 27%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkFitSplineWarpToXformList.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkFitSplineWarpToXformList.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkFitSplineWarpToXformList.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkFitSplineWarpToXformList.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkFitSplineWarpToXformList.cxx [ 27%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkFitToXformListBase.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkFitToXformListBase.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkFitToXformListBase.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkFitToXformListBase.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkFitToXformListBase.cxx [ 28%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkFunctional.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkFunctional.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkFunctional.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkFunctional.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkFunctional.cxx [ 28%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkGeneralLinearModel.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkGeneralLinearModel.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkGeneralLinearModel.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkGeneralLinearModel.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkGeneralLinearModel.cxx [ 28%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkHistogram.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkHistogram.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkHistogram.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkHistogram.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkHistogram.cxx [ 28%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkHypothesisTests.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkHypothesisTests.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkHypothesisTests.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkHypothesisTests.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkHypothesisTests.cxx [ 28%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperation.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperation.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkImageOperation.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkImageOperation.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkImageOperation.cxx [ 29%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationCropRegion.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationCropRegion.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkImageOperationCropRegion.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkImageOperationCropRegion.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkImageOperationCropRegion.cxx [ 29%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationCropThreshold.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationCropThreshold.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkImageOperationCropThreshold.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkImageOperationCropThreshold.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkImageOperationCropThreshold.cxx [ 29%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationDistanceMap.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationDistanceMap.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkImageOperationDistanceMap.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkImageOperationDistanceMap.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkImageOperationDistanceMap.cxx [ 29%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationDownsample.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationDownsample.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkImageOperationDownsample.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkImageOperationDownsample.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkImageOperationDownsample.cxx [ 29%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationHistogramEqualization.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationHistogramEqualization.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkImageOperationHistogramEqualization.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkImageOperationHistogramEqualization.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkImageOperationHistogramEqualization.cxx [ 30%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationMapValues.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationMapValues.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkImageOperationMapValues.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkImageOperationMapValues.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkImageOperationMapValues.cxx [ 30%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationRegionFilter.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationRegionFilter.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkImageOperationRegionFilter.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkImageOperationRegionFilter.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkImageOperationRegionFilter.cxx [ 30%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationResampleIsotropic.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationResampleIsotropic.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkImageOperationResampleIsotropic.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkImageOperationResampleIsotropic.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkImageOperationResampleIsotropic.cxx [ 30%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationScaleToRange.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationScaleToRange.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkImageOperationScaleToRange.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkImageOperationScaleToRange.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkImageOperationScaleToRange.cxx [ 30%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationThreshold.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationThreshold.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkImageOperationThreshold.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkImageOperationThreshold.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkImageOperationThreshold.cxx [ 31%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationOtsuThreshold.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationOtsuThreshold.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkImageOperationOtsuThreshold.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkImageOperationOtsuThreshold.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkImageOperationOtsuThreshold.cxx [ 31%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationPruneHistogram.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationPruneHistogram.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkImageOperationPruneHistogram.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkImageOperationPruneHistogram.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkImageOperationPruneHistogram.cxx /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkImageOperationCropThreshold.cxx: In member function 'virtual cmtk::UniformVolume::SmartPtr cmtk::ImageOperationCropThreshold::Apply(cmtk::UniformVolume::SmartPtr&)': /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkImageOperationCropThreshold.cxx:41:24: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long int' [-Wformat=] 41 | printf( "AutoCrop %d,%d,%d,%d,%d,%d\n", cropRegion.From()[0], cropRegion.From()[1], cropRegion.From()[2], cropRegion.To()[0], cropRegion.To()[1], cropRegion.To()[2] ); | ~^ | | | int | %lld /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkImageOperationCropThreshold.cxx:41:27: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long long int' [-Wformat=] 41 | printf( "AutoCrop %d,%d,%d,%d,%d,%d\n", cropRegion.From()[0], cropRegion.From()[1], cropRegion.From()[2], cropRegion.To()[0], cropRegion.To()[1], cropRegion.To()[2] ); | ~^ | | | int | %lld /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkImageOperationCropThreshold.cxx:41:30: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long long int' [-Wformat=] 41 | printf( "AutoCrop %d,%d,%d,%d,%d,%d\n", cropRegion.From()[0], cropRegion.From()[1], cropRegion.From()[2], cropRegion.To()[0], cropRegion.To()[1], cropRegion.To()[2] ); | ~^ | | | int | %lld /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkImageOperationCropThreshold.cxx:41:33: warning: format '%d' expects argument of type 'int', but argument 5 has type 'long long int' [-Wformat=] 41 | printf( "AutoCrop %d,%d,%d,%d,%d,%d\n", cropRegion.From()[0], cropRegion.From()[1], cropRegion.From()[2], cropRegion.To()[0], cropRegion.To()[1], cropRegion.To()[2] ); | ~^ | | | int | %lld /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkImageOperationCropThreshold.cxx:41:36: warning: format '%d' expects argument of type 'int', but argument 6 has type 'long long int' [-Wformat=] 41 | printf( "AutoCrop %d,%d,%d,%d,%d,%d\n", cropRegion.From()[0], cropRegion.From()[1], cropRegion.From()[2], cropRegion.To()[0], cropRegion.To()[1], cropRegion.To()[2] ); | ~^ | | | int | %lld /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkImageOperationCropThreshold.cxx:41:39: warning: format '%d' expects argument of type 'int', but argument 7 has type 'long long int' [-Wformat=] 41 | printf( "AutoCrop %d,%d,%d,%d,%d,%d\n", cropRegion.From()[0], cropRegion.From()[1], cropRegion.From()[2], cropRegion.To()[0], cropRegion.To()[1], cropRegion.To()[2] ); | ~^ | | | int | %lld [ 31%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationRevert.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkImageOperationRevert.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkImageOperationRevert.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkImageOperationRevert.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkImageOperationRevert.cxx [ 31%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkJointHistogram.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkJointHistogram.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkJointHistogram.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkJointHistogram.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkJointHistogram.cxx /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkImageOperationDownsample.cxx: In static member function 'static void cmtk::ImageOperationDownsample::NewGeneric(bool, const char*)': /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkImageOperationDownsample.cxx:54:43: warning: format '%d' expects argument of type 'int*', but argument 3 has type 'cmtk::Types::GridIndexType*' {aka 'long long int*'} [-Wformat=] 54 | const size_t nFactors = sscanf( arg, "%5d,%5d,%5d", &factorsX, &factorsY, &factorsZ ); | ~~^ ~~~~~~~~~ | | | | int* cmtk::Types::GridIndexType* {aka long long int*} | %5lld /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkImageOperationDownsample.cxx:54:47: warning: format '%d' expects argument of type 'int*', but argument 4 has type 'cmtk::Types::GridIndexType*' {aka 'long long int*'} [-Wformat=] 54 | const size_t nFactors = sscanf( arg, "%5d,%5d,%5d", &factorsX, &factorsY, &factorsZ ); | ~~^ ~~~~~~~~~ | | | | int* cmtk::Types::GridIndexType* {aka long long int*} | %5lld /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkImageOperationDownsample.cxx:54:51: warning: format '%d' expects argument of type 'int*', but argument 5 has type 'cmtk::Types::GridIndexType*' {aka 'long long int*'} [-Wformat=] 54 | const size_t nFactors = sscanf( arg, "%5d,%5d,%5d", &factorsX, &factorsY, &factorsZ ); | ~~^ ~~~~~~~~~ | | | | int* cmtk::Types::GridIndexType* {aka long long int*} | %5lld [ 31%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkJointHistogramBase.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkJointHistogramBase.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkJointHistogramBase.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkJointHistogramBase.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkJointHistogramBase.cxx [ 32%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkLandmark.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkLandmark.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkLandmark.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkLandmark.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkLandmark.cxx [ 32%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkLandmarkPair.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkLandmarkPair.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkLandmarkPair.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkLandmarkPair.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkLandmarkPair.cxx [ 32%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkLandmarkList.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkLandmarkList.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkLandmarkList.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkLandmarkList.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkLandmarkList.cxx [ 32%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkLandmarkPairList.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkLandmarkPairList.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkLandmarkPairList.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkLandmarkPairList.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkLandmarkPairList.cxx [ 32%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkMagphanEMR051.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkMagphanEMR051.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkMagphanEMR051.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkMagphanEMR051.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkMagphanEMR051.cxx [ 33%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkMagphanEMR051_GetPhantomImage.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkMagphanEMR051_GetPhantomImage.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkMagphanEMR051_GetPhantomImage.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkMagphanEMR051_GetPhantomImage.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkMagphanEMR051_GetPhantomImage.cxx [ 33%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkMathFunctionWrappers.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkMathFunctionWrappers.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkMathFunctionWrappers.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkMathFunctionWrappers.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkMathFunctionWrappers.cxx [ 33%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkMathUtil_LinAlg.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkMathUtil_LinAlg.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkMathUtil_LinAlg.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkMathUtil_LinAlg.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkMathUtil_LinAlg.cxx [ 33%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkMathUtil_Random.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkMathUtil_Random.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkMathUtil_Random.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkMathUtil_Random.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkMathUtil_Random.cxx [ 33%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkMathUtil_Statistics.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkMathUtil_Statistics.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkMathUtil_Statistics.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkMathUtil_Statistics.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkMathUtil_Statistics.cxx [ 34%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkMatrix3x3.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkMatrix3x3.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkMatrix3x3.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkMatrix3x3.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkMatrix3x3.cxx [ 34%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkMatrix4x4.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkMatrix4x4.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkMatrix4x4.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkMatrix4x4.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkMatrix4x4.cxx [ 34%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkMetaInformationObject.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkMetaInformationObject.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkMetaInformationObject.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkMetaInformationObject.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkMetaInformationObject.cxx [ 34%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkParametricPlane.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkParametricPlane.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkParametricPlane.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkParametricPlane.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkParametricPlane.cxx [ 34%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkPolynomialXform.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkPolynomialXform.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkPolynomialXform.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkPolynomialXform.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkPolynomialXform.cxx [ 34%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkScalarImage.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkScalarImage.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkScalarImage.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkScalarImage.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkScalarImage.cxx [ 35%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkScalarImageGradientField.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkScalarImageGradientField.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkScalarImageGradientField.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkScalarImageGradientField.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkScalarImageGradientField.cxx [ 35%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkSegmentationLabel.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkSegmentationLabel.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkSegmentationLabel.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkSegmentationLabel.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkSegmentationLabel.cxx [ 35%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkSplineWarpXform.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkSplineWarpXform.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkSplineWarpXform.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkSplineWarpXform.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkSplineWarpXform.cxx [ 35%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkSplineWarpXform_Inverse.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkSplineWarpXform_Inverse.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkSplineWarpXform_Inverse.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkSplineWarpXform_Inverse.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkSplineWarpXform_Inverse.cxx [ 35%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkSplineWarpXform_Jacobian.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkSplineWarpXform_Jacobian.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkSplineWarpXform_Jacobian.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkSplineWarpXform_Jacobian.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkSplineWarpXform_Jacobian.cxx [ 36%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkSplineWarpXform_Rigidity.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkSplineWarpXform_Rigidity.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkSplineWarpXform_Rigidity.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkSplineWarpXform_Rigidity.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkSplineWarpXform_Rigidity.cxx [ 36%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkSplineWarpXformUniformVolume.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkSplineWarpXformUniformVolume.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkSplineWarpXformUniformVolume.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkSplineWarpXformUniformVolume.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkSplineWarpXformUniformVolume.cxx [ 36%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkTransformChangeToSpaceAffine.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkTransformChangeToSpaceAffine.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkTransformChangeToSpaceAffine.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkTransformChangeToSpaceAffine.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkTransformChangeToSpaceAffine.cxx [ 36%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkTransformChangeFromSpaceAffine.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkTransformChangeFromSpaceAffine.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkTransformChangeFromSpaceAffine.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkTransformChangeFromSpaceAffine.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkTransformChangeFromSpaceAffine.cxx [ 36%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkTransformedVolumeAxes.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkTransformedVolumeAxes.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkTransformedVolumeAxes.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkTransformedVolumeAxes.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkTransformedVolumeAxes.cxx [ 37%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkTypedArray.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkTypedArray.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkTypedArray.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkTypedArray.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkTypedArray.cxx [ 37%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkTypedArray_Statistics.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkTypedArray_Statistics.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkTypedArray_Statistics.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkTypedArray_Statistics.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkTypedArray_Statistics.cxx [ 37%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkTypedArrayFunctionHistogramMatching.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkTypedArrayFunctionHistogramMatching.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkTypedArrayFunctionHistogramMatching.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkTypedArrayFunctionHistogramMatching.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkTypedArrayFunctionHistogramMatching.cxx [ 37%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkTypedArrayFunctionHistogramEqualization.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkTypedArrayFunctionHistogramEqualization.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkTypedArrayFunctionHistogramEqualization.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkTypedArrayFunctionHistogramEqualization.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkTypedArrayFunctionHistogramEqualization.cxx [ 37%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkTypedArrayNoiseEstimatorNaiveGaussian.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkTypedArrayNoiseEstimatorNaiveGaussian.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkTypedArrayNoiseEstimatorNaiveGaussian.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkTypedArrayNoiseEstimatorNaiveGaussian.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkTypedArrayNoiseEstimatorNaiveGaussian.cxx [ 38%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkTypes.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkTypes.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkTypes.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkTypes.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkTypes.cxx [ 38%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkUniformDistanceMap.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkUniformDistanceMap.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkUniformDistanceMap.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkUniformDistanceMap.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkUniformDistanceMap.cxx [ 38%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkUniformVolume.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkUniformVolume.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkUniformVolume.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkUniformVolume.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkUniformVolume.cxx [ 38%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkUniformVolume_Crop.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkUniformVolume_Crop.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkUniformVolume_Crop.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkUniformVolume_Crop.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkUniformVolume_Crop.cxx [ 38%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkUniformVolume_Differential.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkUniformVolume_Differential.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkUniformVolume_Differential.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkUniformVolume_Differential.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkUniformVolume_Differential.cxx [ 39%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkUniformVolume_Resample.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkUniformVolume_Resample.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkUniformVolume_Resample.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkUniformVolume_Resample.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkUniformVolume_Resample.cxx [ 39%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkUniformVolume_Space.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkUniformVolume_Space.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkUniformVolume_Space.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkUniformVolume_Space.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkUniformVolume_Space.cxx [ 39%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkUniformVolumeGaussianFilter.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkUniformVolumeGaussianFilter.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkUniformVolumeGaussianFilter.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkUniformVolumeGaussianFilter.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkUniformVolumeGaussianFilter.cxx [ 39%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkUniformVolumeLaplaceFilter.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkUniformVolumeLaplaceFilter.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkUniformVolumeLaplaceFilter.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkUniformVolumeLaplaceFilter.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkUniformVolumeLaplaceFilter.cxx [ 39%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkUniformVolumeInterpolatorBase.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkUniformVolumeInterpolatorBase.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkUniformVolumeInterpolatorBase.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkUniformVolumeInterpolatorBase.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkUniformVolumeInterpolatorBase.cxx [ 40%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkUniformVolumeInterpolatorPartialVolume.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkUniformVolumeInterpolatorPartialVolume.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkUniformVolumeInterpolatorPartialVolume.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkUniformVolumeInterpolatorPartialVolume.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkUniformVolumeInterpolatorPartialVolume.cxx [ 40%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkUniformVolumeMorphologicalOperators.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkUniformVolumeMorphologicalOperators.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkUniformVolumeMorphologicalOperators.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkUniformVolumeMorphologicalOperators.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkUniformVolumeMorphologicalOperators.cxx [ 40%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkUniformVolumePainter.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkUniformVolumePainter.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkUniformVolumePainter.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkUniformVolumePainter.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkUniformVolumePainter.cxx [ 40%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkVolumeClipping.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkVolumeClipping.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkVolumeClipping.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkVolumeClipping.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkVolumeClipping.cxx [ 40%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkVolume.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkVolume.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkVolume.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkVolume.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkVolume.cxx [ 41%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkVolumeGridToGridLookup.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkVolumeGridToGridLookup.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkVolumeGridToGridLookup.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkVolumeGridToGridLookup.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkVolumeGridToGridLookup.cxx [ 41%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkWarpXform.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkWarpXform.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkWarpXform.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkWarpXform.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkWarpXform.cxx [ 41%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkXform.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkXform.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkXform.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkXform.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkXform.cxx [ 41%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkXform_Inverse.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkXform_Inverse.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkXform_Inverse.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkXform_Inverse.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkXform_Inverse.cxx [ 41%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkXformList.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkXformList.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkXformList.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkXformList.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkXformList.cxx [ 42%] Building CXX object libs/Base/CMakeFiles/cmtkBase.dir/cmtkXformListEntry.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkBase_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Base/CMakeFiles/cmtkBase.dir/cmtkXformListEntry.cxx.o -MF CMakeFiles/cmtkBase.dir/cmtkXformListEntry.cxx.o.d -o CMakeFiles/cmtkBase.dir/cmtkXformListEntry.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Base/cmtkXformListEntry.cxx [ 42%] Linking CXX shared library ../../bin/libcmtkBase.so cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Base && /usr/bin/cmake -E cmake_link_script CMakeFiles/cmtkBase.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat 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CMakeFiles/cmtkBase.dir/cmtkDataGridMorphologicalOperators.cxx.o CMakeFiles/cmtkBase.dir/cmtkDeformationField.cxx.o CMakeFiles/cmtkBase.dir/cmtkDeformationField_Jacobian.cxx.o CMakeFiles/cmtkBase.dir/cmtkDirectionSet.cxx.o CMakeFiles/cmtkBase.dir/cmtkFilterVolume.cxx.o CMakeFiles/cmtkBase.dir/cmtkFitAffineToLandmarks.cxx.o CMakeFiles/cmtkBase.dir/cmtkFitAffineToWarpXform.cxx.o CMakeFiles/cmtkBase.dir/cmtkFitAffineToXformList.cxx.o CMakeFiles/cmtkBase.dir/cmtkFitPolynomialToLandmarks.cxx.o CMakeFiles/cmtkBase.dir/cmtkFitRigidToLandmarks.cxx.o CMakeFiles/cmtkBase.dir/cmtkFitSplineWarpToDeformationField.cxx.o CMakeFiles/cmtkBase.dir/cmtkFitSplineWarpToLandmarks.cxx.o CMakeFiles/cmtkBase.dir/cmtkFitSplineWarpToXformList.cxx.o CMakeFiles/cmtkBase.dir/cmtkFitToXformListBase.cxx.o CMakeFiles/cmtkBase.dir/cmtkFunctional.cxx.o CMakeFiles/cmtkBase.dir/cmtkGeneralLinearModel.cxx.o CMakeFiles/cmtkBase.dir/cmtkHistogram.cxx.o CMakeFiles/cmtkBase.dir/cmtkHypothesisTests.cxx.o CMakeFiles/cmtkBase.dir/cmtkImageOperation.cxx.o CMakeFiles/cmtkBase.dir/cmtkImageOperationCropRegion.cxx.o CMakeFiles/cmtkBase.dir/cmtkImageOperationCropThreshold.cxx.o CMakeFiles/cmtkBase.dir/cmtkImageOperationDistanceMap.cxx.o CMakeFiles/cmtkBase.dir/cmtkImageOperationDownsample.cxx.o CMakeFiles/cmtkBase.dir/cmtkImageOperationHistogramEqualization.cxx.o CMakeFiles/cmtkBase.dir/cmtkImageOperationMapValues.cxx.o CMakeFiles/cmtkBase.dir/cmtkImageOperationRegionFilter.cxx.o CMakeFiles/cmtkBase.dir/cmtkImageOperationResampleIsotropic.cxx.o CMakeFiles/cmtkBase.dir/cmtkImageOperationScaleToRange.cxx.o CMakeFiles/cmtkBase.dir/cmtkImageOperationThreshold.cxx.o CMakeFiles/cmtkBase.dir/cmtkImageOperationOtsuThreshold.cxx.o CMakeFiles/cmtkBase.dir/cmtkImageOperationPruneHistogram.cxx.o CMakeFiles/cmtkBase.dir/cmtkImageOperationRevert.cxx.o CMakeFiles/cmtkBase.dir/cmtkJointHistogram.cxx.o CMakeFiles/cmtkBase.dir/cmtkJointHistogramBase.cxx.o CMakeFiles/cmtkBase.dir/cmtkLandmark.cxx.o CMakeFiles/cmtkBase.dir/cmtkLandmarkPair.cxx.o CMakeFiles/cmtkBase.dir/cmtkLandmarkList.cxx.o CMakeFiles/cmtkBase.dir/cmtkLandmarkPairList.cxx.o CMakeFiles/cmtkBase.dir/cmtkMagphanEMR051.cxx.o CMakeFiles/cmtkBase.dir/cmtkMagphanEMR051_GetPhantomImage.cxx.o CMakeFiles/cmtkBase.dir/cmtkMathFunctionWrappers.cxx.o CMakeFiles/cmtkBase.dir/cmtkMathUtil_LinAlg.cxx.o CMakeFiles/cmtkBase.dir/cmtkMathUtil_Random.cxx.o CMakeFiles/cmtkBase.dir/cmtkMathUtil_Statistics.cxx.o CMakeFiles/cmtkBase.dir/cmtkMatrix3x3.cxx.o CMakeFiles/cmtkBase.dir/cmtkMatrix4x4.cxx.o CMakeFiles/cmtkBase.dir/cmtkMetaInformationObject.cxx.o CMakeFiles/cmtkBase.dir/cmtkParametricPlane.cxx.o CMakeFiles/cmtkBase.dir/cmtkPolynomialXform.cxx.o CMakeFiles/cmtkBase.dir/cmtkScalarImage.cxx.o CMakeFiles/cmtkBase.dir/cmtkScalarImageGradientField.cxx.o CMakeFiles/cmtkBase.dir/cmtkSegmentationLabel.cxx.o CMakeFiles/cmtkBase.dir/cmtkSplineWarpXform.cxx.o CMakeFiles/cmtkBase.dir/cmtkSplineWarpXform_Inverse.cxx.o CMakeFiles/cmtkBase.dir/cmtkSplineWarpXform_Jacobian.cxx.o CMakeFiles/cmtkBase.dir/cmtkSplineWarpXform_Rigidity.cxx.o CMakeFiles/cmtkBase.dir/cmtkSplineWarpXformUniformVolume.cxx.o CMakeFiles/cmtkBase.dir/cmtkTransformChangeToSpaceAffine.cxx.o CMakeFiles/cmtkBase.dir/cmtkTransformChangeFromSpaceAffine.cxx.o CMakeFiles/cmtkBase.dir/cmtkTransformedVolumeAxes.cxx.o CMakeFiles/cmtkBase.dir/cmtkTypedArray.cxx.o CMakeFiles/cmtkBase.dir/cmtkTypedArray_Statistics.cxx.o CMakeFiles/cmtkBase.dir/cmtkTypedArrayFunctionHistogramMatching.cxx.o CMakeFiles/cmtkBase.dir/cmtkTypedArrayFunctionHistogramEqualization.cxx.o CMakeFiles/cmtkBase.dir/cmtkTypedArrayNoiseEstimatorNaiveGaussian.cxx.o CMakeFiles/cmtkBase.dir/cmtkTypes.cxx.o CMakeFiles/cmtkBase.dir/cmtkUniformDistanceMap.cxx.o CMakeFiles/cmtkBase.dir/cmtkUniformVolume.cxx.o CMakeFiles/cmtkBase.dir/cmtkUniformVolume_Crop.cxx.o CMakeFiles/cmtkBase.dir/cmtkUniformVolume_Differential.cxx.o CMakeFiles/cmtkBase.dir/cmtkUniformVolume_Resample.cxx.o CMakeFiles/cmtkBase.dir/cmtkUniformVolume_Space.cxx.o CMakeFiles/cmtkBase.dir/cmtkUniformVolumeGaussianFilter.cxx.o CMakeFiles/cmtkBase.dir/cmtkUniformVolumeLaplaceFilter.cxx.o CMakeFiles/cmtkBase.dir/cmtkUniformVolumeInterpolatorBase.cxx.o CMakeFiles/cmtkBase.dir/cmtkUniformVolumeInterpolatorPartialVolume.cxx.o CMakeFiles/cmtkBase.dir/cmtkUniformVolumeMorphologicalOperators.cxx.o CMakeFiles/cmtkBase.dir/cmtkUniformVolumePainter.cxx.o CMakeFiles/cmtkBase.dir/cmtkVolumeClipping.cxx.o CMakeFiles/cmtkBase.dir/cmtkVolume.cxx.o CMakeFiles/cmtkBase.dir/cmtkVolumeGridToGridLookup.cxx.o CMakeFiles/cmtkBase.dir/cmtkWarpXform.cxx.o CMakeFiles/cmtkBase.dir/cmtkXform.cxx.o CMakeFiles/cmtkBase.dir/cmtkXform_Inverse.cxx.o CMakeFiles/cmtkBase.dir/cmtkXformList.cxx.o CMakeFiles/cmtkBase.dir/cmtkXformListEntry.cxx.o -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../../bin/libcmtkSystem.so ../../bin/libcmtkNumerics.so -lbz2 -lz ../../bin/libcmtkMxml.so -lfftw3_omp -lfftw3 -lfftw3_threads make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 42%] Built target cmtkBase make -f libs/IO/CMakeFiles/cmtkIO.dir/build.make libs/IO/CMakeFiles/cmtkIO.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/libs/IO /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO/CMakeFiles/cmtkIO.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f libs/IO/CMakeFiles/cmtkIO.dir/build.make libs/IO/CMakeFiles/cmtkIO.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 42%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkAffineXformITKIO.cxx.o [ 42%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkSplineWarpXformITKIO.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkAffineXformITKIO.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkAffineXformITKIO.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkAffineXformITKIO.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkAffineXformITKIO.cxx cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkSplineWarpXformITKIO.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkSplineWarpXformITKIO.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkSplineWarpXformITKIO.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkSplineWarpXformITKIO.cxx [ 43%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkClassStreamParametricPlane.cxx.o [ 43%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkClassStreamAffineXform.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkClassStreamParametricPlane.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkClassStreamParametricPlane.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkClassStreamParametricPlane.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkClassStreamParametricPlane.cxx [ 43%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkClassStreamPolynomialXform.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkClassStreamAffineXform.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkClassStreamAffineXform.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkClassStreamAffineXform.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkClassStreamAffineXform.cxx cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkClassStreamPolynomialXform.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkClassStreamPolynomialXform.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkClassStreamPolynomialXform.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkClassStreamPolynomialXform.cxx [ 43%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkClassStreamStudyList.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkClassStreamStudyList.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkClassStreamStudyList.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkClassStreamStudyList.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkClassStreamStudyList.cxx [ 43%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkClassStreamWarpXform.cxx.o [ 43%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkFileFormat.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkClassStreamWarpXform.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkClassStreamWarpXform.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkClassStreamWarpXform.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkClassStreamWarpXform.cxx cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkFileFormat.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkFileFormat.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkFileFormat.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkFileFormat.cxx [ 44%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkImageFileDICOM.cxx.o [ 44%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkGroupwiseRegistrationFunctionalIO.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkGroupwiseRegistrationFunctionalIO.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkGroupwiseRegistrationFunctionalIO.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkGroupwiseRegistrationFunctionalIO.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkGroupwiseRegistrationFunctionalIO.cxx [ 44%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkImageOperationApplyMask.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkImageFileDICOM.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkImageFileDICOM.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkImageFileDICOM.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkImageFileDICOM.cxx cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkImageOperationApplyMask.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkImageOperationApplyMask.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkImageOperationApplyMask.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkImageOperationApplyMask.cxx [ 44%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkImageOperationMatchIntensities.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkImageOperationMatchIntensities.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkImageOperationMatchIntensities.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkImageOperationMatchIntensities.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkImageOperationMatchIntensities.cxx [ 44%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkImageStackDICOM.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkImageStackDICOM.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkImageStackDICOM.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkImageStackDICOM.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkImageStackDICOM.cxx [ 45%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkLandmarkIO.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkLandmarkIO.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkLandmarkIO.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkLandmarkIO.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkLandmarkIO.cxx [ 45%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkLandmarkListIO.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkLandmarkListIO.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkLandmarkListIO.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkLandmarkListIO.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkLandmarkListIO.cxx [ 45%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkPhantomIO_MagphanEMR051.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkPhantomIO_MagphanEMR051.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkPhantomIO_MagphanEMR051.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkPhantomIO_MagphanEMR051.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkPhantomIO_MagphanEMR051.cxx [ 45%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkSegmentationLabelIO.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkSegmentationLabelIO.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkSegmentationLabelIO.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkSegmentationLabelIO.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkSegmentationLabelIO.cxx [ 45%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkSiemensCSAHeader.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkSiemensCSAHeader.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkSiemensCSAHeader.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkSiemensCSAHeader.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkSiemensCSAHeader.cxx [ 45%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkStudy.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkStudy.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkStudy.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkStudy.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkStudy.cxx In file included from /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkImageFileDICOM.cxx:33: /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkImageFileDICOM.h:179:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 179 | std::auto_ptr m_Dataset; | ^~~~~~~~ In file included from /usr/include/c++/12/memory:76, from /usr/include/dcmtk/ofstd/ofmem.h:32, from /usr/include/dcmtk/oflog/appender.h:33, from /usr/include/dcmtk/oflog/spi/apndatch.h:33, from /usr/include/dcmtk/oflog/logger.h:36, from /usr/include/dcmtk/oflog/oflog.h:28, from /usr/include/dcmtk/dcmdata/dctypes.h:27, from /usr/include/dcmtk/dcmdata/dctk.h:28, from /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkImageFileDICOM.h:43: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkImageFileDICOM.h:182:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 182 | std::auto_ptr m_Document; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkImageFileDICOM.h: In member function 'void cmtk::ImageFileDICOM::ReleaseDocument()': /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkImageFileDICOM.h:164:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 164 | this->m_Document = std::auto_ptr( NULL ); | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkImageFileDICOM.cxx: In constructor 'cmtk::ImageFileDICOM::ImageFileDICOM(const std::string&)': /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkImageFileDICOM.cxx:155:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 155 | std::auto_ptr fileformat( new DcmFileFormat ); | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkImageFileDICOM.cxx:164:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 164 | this->m_Dataset = std::auto_ptr( fileformat->getAndRemoveDataset() ); | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkImageFileDICOM.cxx:170:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 170 | this->m_Document = std::auto_ptr( new DiDocument( this->m_Dataset.get(), this->m_Dataset->getOriginalXfer(), CIF_AcrNemaCompatibility ) ); | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkImageStackDICOM.h:38, from /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkImageStackDICOM.cxx:33: /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkImageFileDICOM.h:179:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 179 | std::auto_ptr m_Dataset; | ^~~~~~~~ In file included from /usr/include/c++/12/memory:76, from /usr/include/dcmtk/ofstd/ofmem.h:32, from /usr/include/dcmtk/oflog/appender.h:33, from /usr/include/dcmtk/oflog/spi/apndatch.h:33, from /usr/include/dcmtk/oflog/logger.h:36, from /usr/include/dcmtk/oflog/oflog.h:28, from /usr/include/dcmtk/dcmdata/dctypes.h:27, from /usr/include/dcmtk/dcmdata/dctk.h:28, from /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkImageFileDICOM.h:43: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkImageFileDICOM.h:182:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 182 | std::auto_ptr m_Document; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkImageFileDICOM.h: In member function 'void cmtk::ImageFileDICOM::ReleaseDocument()': /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkImageFileDICOM.h:164:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 164 | this->m_Document = std::auto_ptr( NULL ); | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ [ 46%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkStudyList.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkStudyList.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkStudyList.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkStudyList.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkStudyList.cxx [ 46%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkTypedStream.cxx.o [ 46%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkTypedStreamInput.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkTypedStream.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkTypedStream.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkTypedStream.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkTypedStream.cxx cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkTypedStreamInput.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkTypedStreamInput.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkTypedStreamInput.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkTypedStreamInput.cxx [ 46%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkTypedStreamOutput.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkTypedStreamOutput.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkTypedStreamOutput.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkTypedStreamOutput.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkTypedStreamOutput.cxx [ 46%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkTypedStreamStudylist.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkTypedStreamStudylist.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkTypedStreamStudylist.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkTypedStreamStudylist.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkTypedStreamStudylist.cxx [ 47%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromFile.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromFile.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkVolumeFromFile.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkVolumeFromFile.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkVolumeFromFile.cxx [ 47%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileBioRad.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileBioRad.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileBioRad.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileBioRad.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkVolumeFromFileBioRad.cxx [ 47%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileAnalyze.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileAnalyze.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileAnalyze.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileAnalyze.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkVolumeFromFileAnalyze.cxx [ 47%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileMetaFile.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileMetaFile.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileMetaFile.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileMetaFile.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkVolumeFromFileMetaFile.cxx [ 47%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileNRRD.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileNRRD.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileNRRD.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileNRRD.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkVolumeFromFileNRRD.cxx [ 48%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileNifti.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileNifti.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileNifti.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileNifti.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkVolumeFromFileNifti.cxx /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkTypedStreamOutput.cxx: In member function 'cmtk::TypedStream::Condition cmtk::TypedStreamOutput::WriteIntArray(const char*, const long long int*, int, int)': /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkTypedStreamOutput.cxx:564:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'long long int' [-Wformat=] 564 | fprintf( File, "%ld ", array[i] ); | ~~^ ~~~~~~~~ | | | | long int long long int | %lld [ 48%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileVanderbilt.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileVanderbilt.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileVanderbilt.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileVanderbilt.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkVolumeFromFileVanderbilt.cxx [ 48%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromSlices.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromSlices.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkVolumeFromSlices.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkVolumeFromSlices.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkVolumeFromSlices.cxx [ 48%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeIO.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeIO.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkVolumeIO.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkVolumeIO.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkVolumeIO.cxx [ 48%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkXformIO.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkXformIO.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkXformIO.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkXformIO.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkXformIO.cxx [ 49%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkXformListIO.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkXformListIO.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkXformListIO.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkXformListIO.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkXformListIO.cxx [ 49%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkXformIONifti.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkXformIONifti.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkXformIONifti.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkXformIONifti.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkXformIONifti.cxx /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkVolumeFromFileMetaFile.cxx: In static member function 'static void cmtk::VolumeFromFile::WriteMetaImage(const std::string&, const cmtk::UniformVolume&)': /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkVolumeFromFileMetaFile.cxx:87:33: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long long int' [-Wformat=] 87 | fprintf( outfile, "DimSize = %d %d %d\n", volume.m_Dims[AXIS_X], volume.m_Dims[AXIS_Y], volume.m_Dims[AXIS_Z] ); | ~^ | | | int | %lld /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkVolumeFromFileMetaFile.cxx:87:36: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long long int' [-Wformat=] 87 | fprintf( outfile, "DimSize = %d %d %d\n", volume.m_Dims[AXIS_X], volume.m_Dims[AXIS_Y], volume.m_Dims[AXIS_Z] ); | ~^ | | | int | %lld /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkVolumeFromFileMetaFile.cxx:87:39: warning: format '%d' expects argument of type 'int', but argument 5 has type 'long long int' [-Wformat=] 87 | fprintf( outfile, "DimSize = %d %d %d\n", volume.m_Dims[AXIS_X], volume.m_Dims[AXIS_Y], volume.m_Dims[AXIS_Z] ); | ~^ | | | int | %lld [ 49%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkXformIONrrd.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkXformIONrrd.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkXformIONrrd.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkXformIONrrd.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkXformIONrrd.cxx [ 49%] Building C object libs/IO/CMakeFiles/cmtkIO.dir/nifti1_io_math.c.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/cc -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/nifti1_io_math.c.o -MF CMakeFiles/cmtkIO.dir/nifti1_io_math.c.o.d -o CMakeFiles/cmtkIO.dir/nifti1_io_math.c.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/nifti1_io_math.c [ 49%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkDICOM.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkDICOM.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkDICOM.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkDICOM.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkDICOM.cxx [ 50%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromStudy.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromStudy.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkVolumeFromStudy.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkVolumeFromStudy.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkVolumeFromStudy.cxx [ 50%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileDICOM.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileDICOM.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileDICOM.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileDICOM.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkVolumeFromFileDICOM.cxx [ 50%] Building CXX object libs/IO/CMakeFiles/cmtkIO.dir/cmtkSQLite.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkIO_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/IO/CMakeFiles/cmtkIO.dir/cmtkSQLite.cxx.o -MF CMakeFiles/cmtkIO.dir/cmtkSQLite.cxx.o.d -o CMakeFiles/cmtkIO.dir/cmtkSQLite.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkSQLite.cxx /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkVolumeFromFileVanderbilt.cxx: In static member function 'static const cmtk::UniformVolume::SmartPtr cmtk::VolumeFromFile::ReadVanderbilt(const std::string&)': /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkVolumeFromFileVanderbilt.cxx:58:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 58 | fgets( line, 96, fp ); | ~~~~~^~~~~~~~~~~~~~~~ In file included from /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkDICOM.cxx:35: /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkDICOM.h:137:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 137 | std::auto_ptr m_Document; | ^~~~~~~~ In file included from /usr/include/c++/12/memory:76, from /usr/include/dcmtk/ofstd/ofmem.h:32, from /usr/include/dcmtk/oflog/appender.h:33, from /usr/include/dcmtk/oflog/spi/apndatch.h:33, from /usr/include/dcmtk/oflog/logger.h:36, from /usr/include/dcmtk/oflog/oflog.h:28, from /usr/include/dcmtk/dcmdata/dctypes.h:27, from /usr/include/dcmtk/dcmimgle/didocu.h:28, from /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkDICOM.h:41: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkDICOM.cxx: In member function 'void cmtk::DICOM::InitFromFile(const std::string&)': /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkDICOM.cxx:112:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 112 | std::auto_ptr fileformat( new DcmFileFormat ); | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkDICOM.cxx:133:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 133 | this->m_Document = std::auto_ptr( new DiDocument( this->m_Dataset, this->m_Dataset->getOriginalXfer(), CIF_AcrNemaCompatibility ) ); | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkVolumeFromFileDICOM.cxx:37: /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkDICOM.h:137:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 137 | std::auto_ptr m_Document; | ^~~~~~~~ In file included from /usr/include/c++/12/memory:76, from /usr/include/dcmtk/ofstd/ofmem.h:32, from /usr/include/dcmtk/oflog/appender.h:33, from /usr/include/dcmtk/oflog/spi/apndatch.h:33, from /usr/include/dcmtk/oflog/logger.h:36, from /usr/include/dcmtk/oflog/oflog.h:28, from /usr/include/dcmtk/dcmdata/dctypes.h:27, from /usr/include/dcmtk/dcmimgle/didocu.h:28, from /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkDICOM.h:41: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkVolumeFromStudy.cxx:43: /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkDICOM.h:137:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 137 | std::auto_ptr m_Document; | ^~~~~~~~ In file included from /usr/include/c++/12/memory:76, from /usr/include/dcmtk/ofstd/ofmem.h:32, from /usr/include/dcmtk/oflog/appender.h:33, from /usr/include/dcmtk/oflog/spi/apndatch.h:33, from /usr/include/dcmtk/oflog/logger.h:36, from /usr/include/dcmtk/oflog/oflog.h:28, from /usr/include/dcmtk/dcmdata/dctypes.h:27, from /usr/include/dcmtk/dcmimgle/didocu.h:28, from /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkDICOM.h:41: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ [ 50%] Linking CXX shared library ../../bin/libcmtkIO.so cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/IO && /usr/bin/cmake -E cmake_link_script CMakeFiles/cmtkIO.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -shared -Wl,-soname,libcmtkIO.so -o ../../bin/libcmtkIO.so CMakeFiles/cmtkIO.dir/cmtkAffineXformITKIO.cxx.o CMakeFiles/cmtkIO.dir/cmtkSplineWarpXformITKIO.cxx.o CMakeFiles/cmtkIO.dir/cmtkClassStreamAffineXform.cxx.o CMakeFiles/cmtkIO.dir/cmtkClassStreamParametricPlane.cxx.o CMakeFiles/cmtkIO.dir/cmtkClassStreamPolynomialXform.cxx.o CMakeFiles/cmtkIO.dir/cmtkClassStreamStudyList.cxx.o CMakeFiles/cmtkIO.dir/cmtkClassStreamWarpXform.cxx.o CMakeFiles/cmtkIO.dir/cmtkFileFormat.cxx.o CMakeFiles/cmtkIO.dir/cmtkGroupwiseRegistrationFunctionalIO.cxx.o CMakeFiles/cmtkIO.dir/cmtkImageFileDICOM.cxx.o CMakeFiles/cmtkIO.dir/cmtkImageOperationApplyMask.cxx.o CMakeFiles/cmtkIO.dir/cmtkImageOperationMatchIntensities.cxx.o CMakeFiles/cmtkIO.dir/cmtkImageStackDICOM.cxx.o CMakeFiles/cmtkIO.dir/cmtkLandmarkIO.cxx.o CMakeFiles/cmtkIO.dir/cmtkLandmarkListIO.cxx.o CMakeFiles/cmtkIO.dir/cmtkPhantomIO_MagphanEMR051.cxx.o CMakeFiles/cmtkIO.dir/cmtkSegmentationLabelIO.cxx.o CMakeFiles/cmtkIO.dir/cmtkSiemensCSAHeader.cxx.o CMakeFiles/cmtkIO.dir/cmtkStudy.cxx.o CMakeFiles/cmtkIO.dir/cmtkStudyList.cxx.o CMakeFiles/cmtkIO.dir/cmtkTypedStream.cxx.o CMakeFiles/cmtkIO.dir/cmtkTypedStreamInput.cxx.o CMakeFiles/cmtkIO.dir/cmtkTypedStreamOutput.cxx.o CMakeFiles/cmtkIO.dir/cmtkTypedStreamStudylist.cxx.o CMakeFiles/cmtkIO.dir/cmtkVolumeFromFile.cxx.o CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileAnalyze.cxx.o CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileBioRad.cxx.o CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileMetaFile.cxx.o CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileNRRD.cxx.o CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileNifti.cxx.o CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileVanderbilt.cxx.o CMakeFiles/cmtkIO.dir/cmtkVolumeFromSlices.cxx.o CMakeFiles/cmtkIO.dir/cmtkVolumeIO.cxx.o CMakeFiles/cmtkIO.dir/cmtkXformIO.cxx.o CMakeFiles/cmtkIO.dir/cmtkXformListIO.cxx.o CMakeFiles/cmtkIO.dir/cmtkXformIONifti.cxx.o CMakeFiles/cmtkIO.dir/cmtkXformIONrrd.cxx.o CMakeFiles/cmtkIO.dir/nifti1_io_math.c.o CMakeFiles/cmtkIO.dir/cmtkDICOM.cxx.o CMakeFiles/cmtkIO.dir/cmtkVolumeFromStudy.cxx.o CMakeFiles/cmtkIO.dir/cmtkVolumeFromFileDICOM.cxx.o CMakeFiles/cmtkIO.dir/cmtkSQLite.cxx.o -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../../bin/libcmtkBase.so ../../bin/libcmtkSystem.so ../../bin/libcmtkNumerics.so ../../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 ../../bin/libcmtkMxml.so -lfftw3_omp -lfftw3 -lfftw3_threads -lz make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 50%] Built target cmtkIO make -f libs/Registration/CMakeFiles/cmtkRegistration.dir/build.make libs/Registration/CMakeFiles/cmtkRegistration.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/libs/Registration /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration/CMakeFiles/cmtkRegistration.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f libs/Registration/CMakeFiles/cmtkRegistration.dir/build.make libs/Registration/CMakeFiles/cmtkRegistration.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 51%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkAffineRegistrationCommandLine.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkAffineRegistrationCommandLine.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkAffineRegistrationCommandLine.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkAffineRegistrationCommandLine.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkAffineRegistrationCommandLine.cxx [ 51%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkAffineRegistration.cxx.o [ 51%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkBestDirectionOptimizer.cxx.o [ 51%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkBestNeighbourOptimizer.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkAffineRegistration.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkAffineRegistration.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkAffineRegistration.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkAffineRegistration.cxx cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkBestDirectionOptimizer.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkBestDirectionOptimizer.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkBestDirectionOptimizer.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkBestDirectionOptimizer.cxx [ 51%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkCongealingFunctional.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkBestNeighbourOptimizer.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkBestNeighbourOptimizer.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkBestNeighbourOptimizer.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkBestNeighbourOptimizer.cxx [ 52%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkEchoPlanarUnwarpFunctional.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkCongealingFunctional.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkCongealingFunctional.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkCongealingFunctional.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkCongealingFunctional.cxx [ 52%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkElasticRegistrationCommandLine.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkEchoPlanarUnwarpFunctional.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkEchoPlanarUnwarpFunctional.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkEchoPlanarUnwarpFunctional.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkEchoPlanarUnwarpFunctional.cxx cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkElasticRegistrationCommandLine.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkElasticRegistrationCommandLine.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkElasticRegistrationCommandLine.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkElasticRegistrationCommandLine.cxx [ 52%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkElasticRegistration.cxx.o [ 52%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalAffineInitializer.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkElasticRegistration.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkElasticRegistration.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkElasticRegistration.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkElasticRegistration.cxx [ 53%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplate.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalAffineInitializer.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalAffineInitializer.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalAffineInitializer.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkGroupwiseRegistrationFunctionalAffineInitializer.cxx [ 53%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalBase.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalBase.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalBase.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalBase.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkGroupwiseRegistrationFunctionalBase.cxx [ 53%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplate_Affine_IO.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplate.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplate.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplate.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkGroupwiseRegistrationFunctionalXformTemplate.cxx [ 53%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplate_SplineWarp.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplate_Affine_IO.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplate_Affine_IO.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplate_Affine_IO.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkGroupwiseRegistrationFunctionalXformTemplate_Affine_IO.cxx cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplate_SplineWarp.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplate_SplineWarp.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplate_SplineWarp.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkGroupwiseRegistrationFunctionalXformTemplate_SplineWarp.cxx [ 53%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplate_SplineWarp_IO.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplate_SplineWarp_IO.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplate_SplineWarp_IO.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplate_SplineWarp_IO.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkGroupwiseRegistrationFunctionalXformTemplate_SplineWarp_IO.cxx [ 53%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplateBase.cxx.o [ 54%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationOutput.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplateBase.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplateBase.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplateBase.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkGroupwiseRegistrationFunctionalXformTemplateBase.cxx cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationOutput.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationOutput.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationOutput.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkGroupwiseRegistrationOutput.cxx [ 54%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationRMIFunctional.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationRMIFunctional.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationRMIFunctional.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationRMIFunctional.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkGroupwiseRegistrationRMIFunctional.cxx [ 54%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkHausdorffDistance.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkHausdorffDistance.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkHausdorffDistance.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkHausdorffDistance.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkHausdorffDistance.cxx [ 54%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairRegistration.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairRegistration.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkImagePairRegistration.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkImagePairRegistration.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkImagePairRegistration.cxx [ 54%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairRegistrationFunctional.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairRegistrationFunctional.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkImagePairRegistrationFunctional.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkImagePairRegistrationFunctional.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkImagePairRegistrationFunctional.cxx [ 55%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairRegistrationImagePreprocessor.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairRegistrationImagePreprocessor.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkImagePairRegistrationImagePreprocessor.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkImagePairRegistrationImagePreprocessor.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkImagePairRegistrationImagePreprocessor.cxx [ 55%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairAffineRegistration.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairAffineRegistration.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkImagePairAffineRegistration.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkImagePairAffineRegistration.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkImagePairAffineRegistration.cxx [ 55%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairAffineRegistrationCommandLine.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairAffineRegistrationCommandLine.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkImagePairAffineRegistrationCommandLine.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkImagePairAffineRegistrationCommandLine.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkImagePairAffineRegistrationCommandLine.cxx [ 55%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairAffineRegistrationFunctional.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairAffineRegistrationFunctional.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkImagePairAffineRegistrationFunctional.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkImagePairAffineRegistrationFunctional.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkImagePairAffineRegistrationFunctional.cxx [ 55%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairNonrigidRegistration.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairNonrigidRegistration.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkImagePairNonrigidRegistration.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkImagePairNonrigidRegistration.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkImagePairNonrigidRegistration.cxx [ 56%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairNonrigidRegistrationCommandLine.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairNonrigidRegistrationCommandLine.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkImagePairNonrigidRegistrationCommandLine.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkImagePairNonrigidRegistrationCommandLine.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkImagePairNonrigidRegistrationCommandLine.cxx [ 56%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairNonrigidRegistrationFunctional.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairNonrigidRegistrationFunctional.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkImagePairNonrigidRegistrationFunctional.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkImagePairNonrigidRegistrationFunctional.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkImagePairNonrigidRegistrationFunctional.cxx [ 56%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityJointHistogram.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityJointHistogram.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityJointHistogram.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityJointHistogram.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkImagePairSimilarityJointHistogram.cxx [ 56%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityMeasure.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityMeasure.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityMeasure.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityMeasure.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkImagePairSimilarityMeasure.cxx [ 56%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityMeasureCR.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityMeasureCR.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityMeasureCR.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityMeasureCR.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkImagePairSimilarityMeasureCR.cxx [ 57%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityMeasureMSD.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityMeasureMSD.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityMeasureMSD.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityMeasureMSD.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkImagePairSimilarityMeasureMSD.cxx [ 57%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityMeasureNCC.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityMeasureNCC.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityMeasureNCC.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityMeasureNCC.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkImagePairSimilarityMeasureNCC.cxx [ 57%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityMeasureRMS.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityMeasureRMS.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityMeasureRMS.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityMeasureRMS.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkImagePairSimilarityMeasureRMS.cxx [ 57%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairSymmetricAffineRegistrationFunctional.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairSymmetricAffineRegistrationFunctional.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkImagePairSymmetricAffineRegistrationFunctional.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkImagePairSymmetricAffineRegistrationFunctional.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkImagePairSymmetricAffineRegistrationFunctional.cxx [ 57%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairSymmetricNonrigidRegistrationFunctional.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImagePairSymmetricNonrigidRegistrationFunctional.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkImagePairSymmetricNonrigidRegistrationFunctional.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkImagePairSymmetricNonrigidRegistrationFunctional.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkImagePairSymmetricNonrigidRegistrationFunctional.cxx [ 58%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImageSymmetryPlaneCommandLineBase.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImageSymmetryPlaneCommandLineBase.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkImageSymmetryPlaneCommandLineBase.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkImageSymmetryPlaneCommandLineBase.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkImageSymmetryPlaneCommandLineBase.cxx [ 58%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImageSymmetryPlaneFunctional.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImageSymmetryPlaneFunctional.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkImageSymmetryPlaneFunctional.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkImageSymmetryPlaneFunctional.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkImageSymmetryPlaneFunctional.cxx [ 58%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImageSymmetryPlaneFunctionalBase.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImageSymmetryPlaneFunctionalBase.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkImageSymmetryPlaneFunctionalBase.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkImageSymmetryPlaneFunctionalBase.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkImageSymmetryPlaneFunctionalBase.cxx [ 58%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkMakeInitialAffineTransformation.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkMakeInitialAffineTransformation.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkMakeInitialAffineTransformation.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkMakeInitialAffineTransformation.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkMakeInitialAffineTransformation.cxx [ 58%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkMultiChannelRegistrationFunctionalBase.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkMultiChannelRegistrationFunctionalBase.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkMultiChannelRegistrationFunctionalBase.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkMultiChannelRegistrationFunctionalBase.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkMultiChannelRegistrationFunctionalBase.cxx [ 59%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkProtocolCallback.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkProtocolCallback.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkProtocolCallback.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkProtocolCallback.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkProtocolCallback.cxx [ 59%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkReformatVolume.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkReformatVolume.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkReformatVolume.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkReformatVolume.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkReformatVolume.cxx [ 59%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkRegistrationCallback.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkRegistrationCallback.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkRegistrationCallback.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkRegistrationCallback.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkRegistrationCallback.cxx [ 59%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkRegistrationJointHistogram.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkRegistrationJointHistogram.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkRegistrationJointHistogram.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkRegistrationJointHistogram.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkRegistrationJointHistogram.cxx [ 59%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkSplineWarpCongealingFunctional.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkSplineWarpCongealingFunctional.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkSplineWarpCongealingFunctional.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkSplineWarpCongealingFunctional.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkSplineWarpCongealingFunctional.cxx [ 59%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkSplineWarpCongealingFunctionalStaticThreadStorage.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkSplineWarpCongealingFunctionalStaticThreadStorage.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkSplineWarpCongealingFunctionalStaticThreadStorage.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkSplineWarpCongealingFunctionalStaticThreadStorage.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkSplineWarpCongealingFunctionalStaticThreadStorage.cxx [ 60%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkSplineWarpGroupwiseRegistrationRMIFunctional.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkSplineWarpGroupwiseRegistrationRMIFunctional.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkSplineWarpGroupwiseRegistrationRMIFunctional.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkSplineWarpGroupwiseRegistrationRMIFunctional.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkSplineWarpGroupwiseRegistrationRMIFunctional.cxx [ 60%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkSymmetricElasticFunctional.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkSymmetricElasticFunctional.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkSymmetricElasticFunctional.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkSymmetricElasticFunctional.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkSymmetricElasticFunctional.cxx [ 60%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkSymmetryPlaneFunctional.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkSymmetryPlaneFunctional.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkSymmetryPlaneFunctional.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkSymmetryPlaneFunctional.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkSymmetryPlaneFunctional.cxx [ 60%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkTypedArraySimilarity.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkTypedArraySimilarity.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkTypedArraySimilarity.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkTypedArraySimilarity.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkTypedArraySimilarity.cxx [ 60%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkTypedArraySimilarityMemory.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkTypedArraySimilarityMemory.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkTypedArraySimilarityMemory.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkTypedArraySimilarityMemory.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkTypedArraySimilarityMemory.cxx [ 61%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkTypedArraySimilarityRMI.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkTypedArraySimilarityRMI.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkTypedArraySimilarityRMI.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkTypedArraySimilarityRMI.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkTypedArraySimilarityRMI.cxx [ 61%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkVoxelMatchingAffineFunctional.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkVoxelMatchingAffineFunctional.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkVoxelMatchingAffineFunctional.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkVoxelMatchingAffineFunctional.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkVoxelMatchingAffineFunctional.cxx [ 61%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkVoxelMatchingCorrRatio.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkVoxelMatchingCorrRatio.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkVoxelMatchingCorrRatio.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkVoxelMatchingCorrRatio.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkVoxelMatchingCorrRatio.cxx [ 61%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkVoxelMatchingCrossCorrelation.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkVoxelMatchingCrossCorrelation.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkVoxelMatchingCrossCorrelation.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkVoxelMatchingCrossCorrelation.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkVoxelMatchingCrossCorrelation.cxx [ 61%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkVoxelMatchingElasticFunctional.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkVoxelMatchingElasticFunctional.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkVoxelMatchingElasticFunctional.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkVoxelMatchingElasticFunctional.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkVoxelMatchingElasticFunctional.cxx [ 62%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkVoxelMatchingFunctional.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkVoxelMatchingFunctional.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkVoxelMatchingFunctional.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkVoxelMatchingFunctional.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkVoxelMatchingFunctional.cxx [ 62%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkVoxelMatchingMeanSquaredDifference.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkVoxelMatchingMeanSquaredDifference.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkVoxelMatchingMeanSquaredDifference.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkVoxelMatchingMeanSquaredDifference.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkVoxelMatchingMeanSquaredDifference.cxx [ 62%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkVoxelMatchingMetric.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkVoxelMatchingMetric.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkVoxelMatchingMetric.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkVoxelMatchingMetric.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkVoxelMatchingMetric.cxx [ 62%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkVoxelMatchingMetric_Type.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkVoxelMatchingMetric_Type.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkVoxelMatchingMetric_Type.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkVoxelMatchingMetric_Type.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkVoxelMatchingMetric_Type.cxx [ 62%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkVoxelRegistration.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkVoxelRegistration.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkVoxelRegistration.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkVoxelRegistration.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkVoxelRegistration.cxx [ 63%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkVoxelRegistrationImagePreprocessor.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkVoxelRegistrationImagePreprocessor.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkVoxelRegistrationImagePreprocessor.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkVoxelRegistrationImagePreprocessor.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkVoxelRegistrationImagePreprocessor.cxx [ 63%] Building CXX object libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImageXformDB.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRegistration_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Registration/CMakeFiles/cmtkRegistration.dir/cmtkImageXformDB.cxx.o -MF CMakeFiles/cmtkRegistration.dir/cmtkImageXformDB.cxx.o.d -o CMakeFiles/cmtkRegistration.dir/cmtkImageXformDB.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Registration/cmtkImageXformDB.cxx [ 63%] Linking CXX shared library ../../bin/libcmtkRegistration.so cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Registration && /usr/bin/cmake -E cmake_link_script CMakeFiles/cmtkRegistration.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -shared -Wl,-soname,libcmtkRegistration.so -o ../../bin/libcmtkRegistration.so CMakeFiles/cmtkRegistration.dir/cmtkAffineRegistrationCommandLine.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkAffineRegistration.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkBestDirectionOptimizer.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkBestNeighbourOptimizer.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkCongealingFunctional.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkEchoPlanarUnwarpFunctional.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkElasticRegistrationCommandLine.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkElasticRegistration.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalAffineInitializer.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalBase.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplate.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplate_Affine_IO.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplate_SplineWarp.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplate_SplineWarp_IO.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationFunctionalXformTemplateBase.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationOutput.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkGroupwiseRegistrationRMIFunctional.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkHausdorffDistance.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkImagePairRegistration.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkImagePairRegistrationFunctional.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkImagePairRegistrationImagePreprocessor.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkImagePairAffineRegistration.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkImagePairAffineRegistrationCommandLine.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkImagePairAffineRegistrationFunctional.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkImagePairNonrigidRegistration.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkImagePairNonrigidRegistrationCommandLine.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkImagePairNonrigidRegistrationFunctional.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityJointHistogram.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityMeasure.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityMeasureCR.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityMeasureMSD.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityMeasureNCC.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkImagePairSimilarityMeasureRMS.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkImagePairSymmetricAffineRegistrationFunctional.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkImagePairSymmetricNonrigidRegistrationFunctional.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkImageSymmetryPlaneCommandLineBase.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkImageSymmetryPlaneFunctional.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkImageSymmetryPlaneFunctionalBase.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkMakeInitialAffineTransformation.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkMultiChannelRegistrationFunctionalBase.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkProtocolCallback.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkReformatVolume.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkRegistrationCallback.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkRegistrationJointHistogram.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkSplineWarpCongealingFunctional.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkSplineWarpCongealingFunctionalStaticThreadStorage.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkSplineWarpGroupwiseRegistrationRMIFunctional.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkSymmetricElasticFunctional.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkSymmetryPlaneFunctional.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkTypedArraySimilarity.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkTypedArraySimilarityMemory.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkTypedArraySimilarityRMI.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkVoxelMatchingAffineFunctional.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkVoxelMatchingCorrRatio.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkVoxelMatchingCrossCorrelation.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkVoxelMatchingElasticFunctional.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkVoxelMatchingFunctional.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkVoxelMatchingMeanSquaredDifference.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkVoxelMatchingMetric.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkVoxelMatchingMetric_Type.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkVoxelRegistration.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkVoxelRegistrationImagePreprocessor.cxx.o CMakeFiles/cmtkRegistration.dir/cmtkImageXformDB.cxx.o -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../../bin/libcmtkIO.so ../../bin/libcmtkBase.so ../../bin/libcmtkSystem.so ../../bin/libcmtkNumerics.so -lbz2 ../../bin/libcmtkMxml.so -lfftw3_omp -lfftw3 -lfftw3_threads ../../bin/libNrrdIO.so -lz -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 63%] Built target cmtkRegistration make -f libs/Recon/CMakeFiles/cmtkRecon.dir/build.make libs/Recon/CMakeFiles/cmtkRecon.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/libs/Recon /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Recon /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Recon/CMakeFiles/cmtkRecon.dir/DependInfo.cmake --color= make -f libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/build.make libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/libs/Segmentation /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Segmentation /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f libs/Recon/CMakeFiles/cmtkRecon.dir/build.make libs/Recon/CMakeFiles/cmtkRecon.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/build.make libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 63%] Building CXX object libs/Recon/CMakeFiles/cmtkRecon.dir/cmtkInverseInterpolationVolumeReconstructionBase.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Recon && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRecon_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Recon/CMakeFiles/cmtkRecon.dir/cmtkInverseInterpolationVolumeReconstructionBase.cxx.o -MF CMakeFiles/cmtkRecon.dir/cmtkInverseInterpolationVolumeReconstructionBase.cxx.o.d -o CMakeFiles/cmtkRecon.dir/cmtkInverseInterpolationVolumeReconstructionBase.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Recon/cmtkInverseInterpolationVolumeReconstructionBase.cxx [ 63%] Building CXX object libs/Recon/CMakeFiles/cmtkRecon.dir/cmtkVolumeInjectionReconstruction.cxx.o [ 63%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkAtlasSegmentation.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Recon && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkRecon_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Recon/CMakeFiles/cmtkRecon.dir/cmtkVolumeInjectionReconstruction.cxx.o -MF CMakeFiles/cmtkRecon.dir/cmtkVolumeInjectionReconstruction.cxx.o.d -o CMakeFiles/cmtkRecon.dir/cmtkVolumeInjectionReconstruction.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Recon/cmtkVolumeInjectionReconstruction.cxx cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkAtlasSegmentation.cxx.o -MF CMakeFiles/cmtkSegmentation.dir/cmtkAtlasSegmentation.cxx.o.d -o CMakeFiles/cmtkSegmentation.dir/cmtkAtlasSegmentation.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Segmentation/cmtkAtlasSegmentation.cxx [ 63%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkEntropyMinimizationIntensityCorrectionFunctionalBase.cxx.o [ 64%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkEntropyMinimizationIntensityCorrectionFunctional.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkEntropyMinimizationIntensityCorrectionFunctionalBase.cxx.o -MF CMakeFiles/cmtkSegmentation.dir/cmtkEntropyMinimizationIntensityCorrectionFunctionalBase.cxx.o.d -o CMakeFiles/cmtkSegmentation.dir/cmtkEntropyMinimizationIntensityCorrectionFunctionalBase.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Segmentation/cmtkEntropyMinimizationIntensityCorrectionFunctionalBase.cxx [ 64%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationLocalShapeBasedAveraging.cxx.o [ 64%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationLocalBinaryShapeBasedAveraging.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkEntropyMinimizationIntensityCorrectionFunctional.cxx.o -MF CMakeFiles/cmtkSegmentation.dir/cmtkEntropyMinimizationIntensityCorrectionFunctional.cxx.o.d -o CMakeFiles/cmtkSegmentation.dir/cmtkEntropyMinimizationIntensityCorrectionFunctional.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Segmentation/cmtkEntropyMinimizationIntensityCorrectionFunctional.cxx cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationLocalBinaryShapeBasedAveraging.cxx.o -MF CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationLocalBinaryShapeBasedAveraging.cxx.o.d -o CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationLocalBinaryShapeBasedAveraging.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Segmentation/cmtkLabelCombinationLocalBinaryShapeBasedAveraging.cxx cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationLocalShapeBasedAveraging.cxx.o -MF CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationLocalShapeBasedAveraging.cxx.o.d -o CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationLocalShapeBasedAveraging.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Segmentation/cmtkLabelCombinationLocalShapeBasedAveraging.cxx [ 64%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationLocalVoting.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationLocalVoting.cxx.o -MF CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationLocalVoting.cxx.o.d -o CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationLocalVoting.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Segmentation/cmtkLabelCombinationLocalVoting.cxx [ 64%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationLocalWeighting.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationLocalWeighting.cxx.o -MF CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationLocalWeighting.cxx.o.d -o CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationLocalWeighting.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Segmentation/cmtkLabelCombinationLocalWeighting.cxx [ 64%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationSTAPLE.cxx.o [ 65%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationMultiClassSTAPLE.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationSTAPLE.cxx.o -MF CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationSTAPLE.cxx.o.d -o CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationSTAPLE.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Segmentation/cmtkLabelCombinationSTAPLE.cxx [ 65%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationVoting.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationMultiClassSTAPLE.cxx.o -MF CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationMultiClassSTAPLE.cxx.o.d -o CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationMultiClassSTAPLE.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Segmentation/cmtkLabelCombinationMultiClassSTAPLE.cxx [ 65%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationShapeBasedAveraging.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationVoting.cxx.o -MF CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationVoting.cxx.o.d -o CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationVoting.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Segmentation/cmtkLabelCombinationVoting.cxx cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationShapeBasedAveraging.cxx.o -MF CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationShapeBasedAveraging.cxx.o.d -o CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationShapeBasedAveraging.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Segmentation/cmtkLabelCombinationShapeBasedAveraging.cxx [ 65%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationShapeBasedAveragingInterpolation.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationShapeBasedAveragingInterpolation.cxx.o -MF CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationShapeBasedAveragingInterpolation.cxx.o.d -o CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationShapeBasedAveragingInterpolation.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Segmentation/cmtkLabelCombinationShapeBasedAveragingInterpolation.cxx [ 66%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLeastSquaresPolynomialIntensityBiasField.cxx.o [ 66%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkOverlapMeasures.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkLeastSquaresPolynomialIntensityBiasField.cxx.o -MF CMakeFiles/cmtkSegmentation.dir/cmtkLeastSquaresPolynomialIntensityBiasField.cxx.o.d -o CMakeFiles/cmtkSegmentation.dir/cmtkLeastSquaresPolynomialIntensityBiasField.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Segmentation/cmtkLeastSquaresPolynomialIntensityBiasField.cxx cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkOverlapMeasures.cxx.o -MF CMakeFiles/cmtkSegmentation.dir/cmtkOverlapMeasures.cxx.o.d -o CMakeFiles/cmtkSegmentation.dir/cmtkOverlapMeasures.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Segmentation/cmtkOverlapMeasures.cxx [ 66%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkSimpleLevelset.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkSimpleLevelset.cxx.o -MF CMakeFiles/cmtkSegmentation.dir/cmtkSimpleLevelset.cxx.o.d -o CMakeFiles/cmtkSegmentation.dir/cmtkSimpleLevelset.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Segmentation/cmtkSimpleLevelset.cxx [ 66%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkSimpleLevelsetCommandLineBase.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkSimpleLevelsetCommandLineBase.cxx.o -MF CMakeFiles/cmtkSegmentation.dir/cmtkSimpleLevelsetCommandLineBase.cxx.o.d -o CMakeFiles/cmtkSegmentation.dir/cmtkSimpleLevelsetCommandLineBase.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Segmentation/cmtkSimpleLevelsetCommandLineBase.cxx [ 66%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkDetectPhantomMagphanEMR051.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkDetectPhantomMagphanEMR051.cxx.o -MF CMakeFiles/cmtkSegmentation.dir/cmtkDetectPhantomMagphanEMR051.cxx.o.d -o CMakeFiles/cmtkSegmentation.dir/cmtkDetectPhantomMagphanEMR051.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Segmentation/cmtkDetectPhantomMagphanEMR051.cxx [ 67%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkSphereDetectionBipolarMatchedFilterFFT.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkSphereDetectionBipolarMatchedFilterFFT.cxx.o -MF CMakeFiles/cmtkSegmentation.dir/cmtkSphereDetectionBipolarMatchedFilterFFT.cxx.o.d -o CMakeFiles/cmtkSegmentation.dir/cmtkSphereDetectionBipolarMatchedFilterFFT.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Segmentation/cmtkSphereDetectionBipolarMatchedFilterFFT.cxx [ 67%] Building CXX object libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkSphereDetectionNormalizedBipolarMatchedFilterFFT.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -DcmtkSegmentation_EXPORTS -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -fPIC -MD -MT libs/Segmentation/CMakeFiles/cmtkSegmentation.dir/cmtkSphereDetectionNormalizedBipolarMatchedFilterFFT.cxx.o -MF CMakeFiles/cmtkSegmentation.dir/cmtkSphereDetectionNormalizedBipolarMatchedFilterFFT.cxx.o.d -o CMakeFiles/cmtkSegmentation.dir/cmtkSphereDetectionNormalizedBipolarMatchedFilterFFT.cxx.o -c /build/cmtk-3.3.1p2+dfsg/libs/Segmentation/cmtkSphereDetectionNormalizedBipolarMatchedFilterFFT.cxx [ 67%] Linking CXX shared library ../../bin/libcmtkRecon.so cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Recon && /usr/bin/cmake -E cmake_link_script CMakeFiles/cmtkRecon.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -shared -Wl,-soname,libcmtkRecon.so -o ../../bin/libcmtkRecon.so CMakeFiles/cmtkRecon.dir/cmtkInverseInterpolationVolumeReconstructionBase.cxx.o CMakeFiles/cmtkRecon.dir/cmtkVolumeInjectionReconstruction.cxx.o -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../../bin/libcmtkRegistration.so ../../bin/libcmtkIO.so ../../bin/libcmtkBase.so ../../bin/libcmtkSystem.so -lbz2 ../../bin/libcmtkMxml.so -lfftw3_omp -lfftw3 -lfftw3_threads ../../bin/libcmtkNumerics.so ../../bin/libNrrdIO.so -lz -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 67%] Built target cmtkRecon [ 67%] Linking CXX shared library ../../bin/libcmtkSegmentation.so cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/libs/Segmentation && /usr/bin/cmake -E cmake_link_script CMakeFiles/cmtkSegmentation.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -shared -Wl,-soname,libcmtkSegmentation.so -o ../../bin/libcmtkSegmentation.so CMakeFiles/cmtkSegmentation.dir/cmtkAtlasSegmentation.cxx.o CMakeFiles/cmtkSegmentation.dir/cmtkEntropyMinimizationIntensityCorrectionFunctionalBase.cxx.o CMakeFiles/cmtkSegmentation.dir/cmtkEntropyMinimizationIntensityCorrectionFunctional.cxx.o CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationLocalBinaryShapeBasedAveraging.cxx.o CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationLocalShapeBasedAveraging.cxx.o CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationLocalVoting.cxx.o CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationLocalWeighting.cxx.o CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationMultiClassSTAPLE.cxx.o CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationSTAPLE.cxx.o CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationVoting.cxx.o CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationShapeBasedAveraging.cxx.o CMakeFiles/cmtkSegmentation.dir/cmtkLabelCombinationShapeBasedAveragingInterpolation.cxx.o CMakeFiles/cmtkSegmentation.dir/cmtkLeastSquaresPolynomialIntensityBiasField.cxx.o CMakeFiles/cmtkSegmentation.dir/cmtkOverlapMeasures.cxx.o CMakeFiles/cmtkSegmentation.dir/cmtkSimpleLevelset.cxx.o CMakeFiles/cmtkSegmentation.dir/cmtkSimpleLevelsetCommandLineBase.cxx.o CMakeFiles/cmtkSegmentation.dir/cmtkDetectPhantomMagphanEMR051.cxx.o CMakeFiles/cmtkSegmentation.dir/cmtkSphereDetectionBipolarMatchedFilterFFT.cxx.o CMakeFiles/cmtkSegmentation.dir/cmtkSphereDetectionNormalizedBipolarMatchedFilterFFT.cxx.o -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../../bin/libcmtkRegistration.so -lfftw3_omp -lfftw3 -lfftw3_threads ../../bin/libcmtkIO.so ../../bin/libcmtkBase.so ../../bin/libcmtkSystem.so -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads ../../bin/libcmtkMxml.so ../../bin/libcmtkNumerics.so ../../bin/libNrrdIO.so -lz -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 67%] Built target cmtkSegmentation make -f apps/CMakeFiles/avg_adm.dir/build.make apps/CMakeFiles/avg_adm.dir/depend make -f apps/CMakeFiles/describe.dir/build.make apps/CMakeFiles/describe.dir/depend make -f apps/CMakeFiles/groupwise_init.dir/build.make apps/CMakeFiles/groupwise_init.dir/depend make -f apps/CMakeFiles/groupwise_affine.dir/build.make apps/CMakeFiles/groupwise_affine.dir/depend make -f apps/CMakeFiles/groupwise_warp.dir/build.make apps/CMakeFiles/groupwise_warp.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/avg_adm.dir/DependInfo.cmake --color= make -f apps/CMakeFiles/asegment.dir/build.make apps/CMakeFiles/asegment.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/describe.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/groupwise_init.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/groupwise_affine.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/groupwise_warp.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/asegment.dir/DependInfo.cmake --color= make -f apps/CMakeFiles/average_affine.dir/build.make apps/CMakeFiles/average_affine.dir/depend make -f apps/CMakeFiles/average_images.dir/build.make apps/CMakeFiles/average_images.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/average_affine.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/average_images.dir/DependInfo.cmake --color= make -f apps/CMakeFiles/average_labels.dir/build.make apps/CMakeFiles/average_labels.dir/depend make -f apps/CMakeFiles/concat_affine.dir/build.make apps/CMakeFiles/concat_affine.dir/depend make -f apps/CMakeFiles/convertx.dir/build.make apps/CMakeFiles/convertx.dir/depend make -f apps/CMakeFiles/convert_warp.dir/build.make apps/CMakeFiles/convert_warp.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/average_labels.dir/DependInfo.cmake --color= make -f apps/CMakeFiles/destripe.dir/build.make apps/CMakeFiles/destripe.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/concat_affine.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/convertx.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/convert_warp.dir/DependInfo.cmake --color= make -f apps/CMakeFiles/dof2mat.dir/build.make apps/CMakeFiles/dof2mat.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/destripe.dir/DependInfo.cmake --color= make -f apps/CMakeFiles/dwi_mask_bad_slices.dir/build.make apps/CMakeFiles/dwi_mask_bad_slices.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/dof2mat.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/dwi_mask_bad_slices.dir/DependInfo.cmake --color= make -f apps/CMakeFiles/epiunwarp.dir/build.make apps/CMakeFiles/epiunwarp.dir/depend make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/asegment.dir/build.make apps/CMakeFiles/asegment.dir/build make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/epiunwarp.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/avg_adm.dir/build.make apps/CMakeFiles/avg_adm.dir/build make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/describe.dir/build.make apps/CMakeFiles/describe.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/groupwise_init.dir/build.make apps/CMakeFiles/groupwise_init.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/groupwise_affine.dir/build.make apps/CMakeFiles/groupwise_affine.dir/build make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/groupwise_warp.dir/build.make apps/CMakeFiles/groupwise_warp.dir/build make -f apps/CMakeFiles/average_affine.dir/build.make apps/CMakeFiles/average_affine.dir/build make -f apps/CMakeFiles/average_images.dir/build.make apps/CMakeFiles/average_images.dir/build make -f apps/CMakeFiles/concat_affine.dir/build.make apps/CMakeFiles/concat_affine.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/convertx.dir/build.make apps/CMakeFiles/convertx.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 67%] Building CXX object apps/CMakeFiles/asegment.dir/asegment.cxx.o make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/asegment.dir/asegment.cxx.o -MF CMakeFiles/asegment.dir/asegment.cxx.o.d -o CMakeFiles/asegment.dir/asegment.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/asegment.cxx make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/average_labels.dir/build.make apps/CMakeFiles/average_labels.dir/build make -f apps/CMakeFiles/destripe.dir/build.make apps/CMakeFiles/destripe.dir/build make -f apps/CMakeFiles/dof2mat.dir/build.make apps/CMakeFiles/dof2mat.dir/build [ 67%] Building CXX object apps/CMakeFiles/avg_adm.dir/avg_adm.cxx.o make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/avg_adm.dir/avg_adm.cxx.o -MF CMakeFiles/avg_adm.dir/avg_adm.cxx.o.d -o CMakeFiles/avg_adm.dir/avg_adm.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/avg_adm.cxx make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 68%] Building CXX object apps/CMakeFiles/groupwise_init.dir/groupwise_init.cxx.o make -f apps/CMakeFiles/convert_warp.dir/build.make apps/CMakeFiles/convert_warp.dir/build [ 68%] Building CXX object apps/CMakeFiles/groupwise_affine.dir/groupwise_affine.cxx.o [ 68%] Building CXX object apps/CMakeFiles/groupwise_warp.dir/groupwise_warp.cxx.o [ 68%] Building CXX object apps/CMakeFiles/average_images.dir/average_images.cxx.o [ 69%] Building CXX object apps/CMakeFiles/average_affine.dir/average_affine.cxx.o [ 69%] Building CXX object apps/CMakeFiles/describe.dir/describe.cxx.o make -f apps/CMakeFiles/dwi_mask_bad_slices.dir/build.make apps/CMakeFiles/dwi_mask_bad_slices.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/groupwise_affine.dir/groupwise_affine.cxx.o -MF CMakeFiles/groupwise_affine.dir/groupwise_affine.cxx.o.d -o CMakeFiles/groupwise_affine.dir/groupwise_affine.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/groupwise_affine.cxx cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/groupwise_init.dir/groupwise_init.cxx.o -MF CMakeFiles/groupwise_init.dir/groupwise_init.cxx.o.d -o CMakeFiles/groupwise_init.dir/groupwise_init.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/groupwise_init.cxx cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/groupwise_warp.dir/groupwise_warp.cxx.o -MF CMakeFiles/groupwise_warp.dir/groupwise_warp.cxx.o.d -o CMakeFiles/groupwise_warp.dir/groupwise_warp.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/groupwise_warp.cxx cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/average_affine.dir/average_affine.cxx.o -MF CMakeFiles/average_affine.dir/average_affine.cxx.o.d -o CMakeFiles/average_affine.dir/average_affine.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/average_affine.cxx make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/epiunwarp.dir/build.make apps/CMakeFiles/epiunwarp.dir/build cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/average_images.dir/average_images.cxx.o -MF CMakeFiles/average_images.dir/average_images.cxx.o.d -o CMakeFiles/average_images.dir/average_images.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/average_images.cxx [ 69%] Building CXX object apps/CMakeFiles/convertx.dir/convertx.cxx.o [ 69%] Building CXX object apps/CMakeFiles/destripe.dir/destripe.cxx.o [ 69%] Building CXX object apps/CMakeFiles/average_labels.dir/average_labels.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/describe.dir/describe.cxx.o -MF CMakeFiles/describe.dir/describe.cxx.o.d -o CMakeFiles/describe.dir/describe.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/describe.cxx cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/convertx.dir/convertx.cxx.o -MF CMakeFiles/convertx.dir/convertx.cxx.o.d -o CMakeFiles/convertx.dir/convertx.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/convertx.cxx make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/average_labels.dir/average_labels.cxx.o -MF CMakeFiles/average_labels.dir/average_labels.cxx.o.d -o CMakeFiles/average_labels.dir/average_labels.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/average_labels.cxx cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/destripe.dir/destripe.cxx.o -MF CMakeFiles/destripe.dir/destripe.cxx.o.d -o CMakeFiles/destripe.dir/destripe.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/destripe.cxx [ 69%] Building CXX object apps/CMakeFiles/concat_affine.dir/concat_affine.cxx.o [ 69%] Building CXX object apps/CMakeFiles/dof2mat.dir/dof2mat.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/concat_affine.dir/concat_affine.cxx.o -MF CMakeFiles/concat_affine.dir/concat_affine.cxx.o.d -o CMakeFiles/concat_affine.dir/concat_affine.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/concat_affine.cxx cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/dof2mat.dir/dof2mat.cxx.o -MF CMakeFiles/dof2mat.dir/dof2mat.cxx.o.d -o CMakeFiles/dof2mat.dir/dof2mat.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/dof2mat.cxx [ 69%] Building CXX object apps/CMakeFiles/convert_warp.dir/convert_warp.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/convert_warp.dir/convert_warp.cxx.o -MF CMakeFiles/convert_warp.dir/convert_warp.cxx.o.d -o CMakeFiles/convert_warp.dir/convert_warp.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/convert_warp.cxx [ 69%] Building CXX object apps/CMakeFiles/dwi_mask_bad_slices.dir/dwi_mask_bad_slices.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/dwi_mask_bad_slices.dir/dwi_mask_bad_slices.cxx.o -MF CMakeFiles/dwi_mask_bad_slices.dir/dwi_mask_bad_slices.cxx.o.d -o CMakeFiles/dwi_mask_bad_slices.dir/dwi_mask_bad_slices.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/dwi_mask_bad_slices.cxx [ 69%] Building CXX object apps/CMakeFiles/epiunwarp.dir/epiunwarp.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/epiunwarp.dir/epiunwarp.cxx.o -MF CMakeFiles/epiunwarp.dir/epiunwarp.cxx.o.d -o CMakeFiles/epiunwarp.dir/epiunwarp.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/epiunwarp.cxx /build/cmtk-3.3.1p2+dfsg/apps/describe.cxx: In function 'void DescribeImage(const char*)': /build/cmtk-3.3.1p2+dfsg/apps/describe.cxx:88:30: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long long int' [-Wformat=] 88 | fprintf( stdout, "XDIM\t%d\nYDIM\t%d\nZDIM\t%d\n", volume->GetDims()[cmtk::AXIS_X], volume->GetDims()[cmtk::AXIS_Y], volume->GetDims()[cmtk::AXIS_Z] ); | ~^ | | | int | %lld /build/cmtk-3.3.1p2+dfsg/apps/describe.cxx:88:40: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long long int' [-Wformat=] 88 | fprintf( stdout, "XDIM\t%d\nYDIM\t%d\nZDIM\t%d\n", volume->GetDims()[cmtk::AXIS_X], volume->GetDims()[cmtk::AXIS_Y], volume->GetDims()[cmtk::AXIS_Z] ); | ~^ | | | int | %lld /build/cmtk-3.3.1p2+dfsg/apps/describe.cxx:88:50: warning: format '%d' expects argument of type 'int', but argument 5 has type 'long long int' [-Wformat=] 88 | fprintf( stdout, "XDIM\t%d\nYDIM\t%d\nZDIM\t%d\n", volume->GetDims()[cmtk::AXIS_X], volume->GetDims()[cmtk::AXIS_Y], volume->GetDims()[cmtk::AXIS_Z] ); | ~^ | | | int | %lld /build/cmtk-3.3.1p2+dfsg/apps/describe.cxx:124:24: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long long int' [-Wformat=] 124 | fprintf( stdout, "%d x %d x %d voxels\n", volume->GetDims()[cmtk::AXIS_X], volume->GetDims()[cmtk::AXIS_Y], volume->GetDims()[cmtk::AXIS_Z] ); | ~^ | | | int | %lld /build/cmtk-3.3.1p2+dfsg/apps/describe.cxx:124:29: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long long int' [-Wformat=] 124 | fprintf( stdout, "%d x %d x %d voxels\n", volume->GetDims()[cmtk::AXIS_X], volume->GetDims()[cmtk::AXIS_Y], volume->GetDims()[cmtk::AXIS_Z] ); | ~^ | | | int | %lld /build/cmtk-3.3.1p2+dfsg/apps/describe.cxx:124:34: warning: format '%d' expects argument of type 'int', but argument 5 has type 'long long int' [-Wformat=] 124 | fprintf( stdout, "%d x %d x %d voxels\n", volume->GetDims()[cmtk::AXIS_X], volume->GetDims()[cmtk::AXIS_Y], volume->GetDims()[cmtk::AXIS_Z] ); | ~^ | | | int | %lld [ 69%] Linking CXX executable ../bin/dof2mat cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/dof2mat.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/dof2mat.dir/dof2mat.cxx.o -o ../bin/dof2mat -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 69%] Built target dof2mat make -f apps/CMakeFiles/fibxform.dir/build.make apps/CMakeFiles/fibxform.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/fibxform.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/fibxform.dir/build.make apps/CMakeFiles/fibxform.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 70%] Building CXX object apps/CMakeFiles/fibxform.dir/fibxform.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/fibxform.dir/fibxform.cxx.o -MF CMakeFiles/fibxform.dir/fibxform.cxx.o.d -o CMakeFiles/fibxform.dir/fibxform.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/fibxform.cxx [ 70%] Linking CXX executable ../bin/asegment cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/asegment.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/asegment.dir/asegment.cxx.o -o ../bin/asegment -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 70%] Built target asegment make -f apps/CMakeFiles/fib2image.dir/build.make apps/CMakeFiles/fib2image.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/fib2image.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/fib2image.dir/build.make apps/CMakeFiles/fib2image.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 70%] Building CXX object apps/CMakeFiles/fib2image.dir/fib2image.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/fib2image.dir/fib2image.cxx.o -MF CMakeFiles/fib2image.dir/fib2image.cxx.o.d -o CMakeFiles/fib2image.dir/fib2image.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/fib2image.cxx [ 71%] Linking CXX executable ../bin/average_labels cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/average_labels.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/average_labels.dir/average_labels.cxx.o -o ../bin/average_labels -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 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'/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/film.dir/build.make apps/CMakeFiles/film.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/groupwise_init.dir/groupwise_init.cxx.o -o ../bin/groupwise_init -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so [ 71%] Building CXX object apps/CMakeFiles/film.dir/film.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/film.dir/film.cxx.o -MF CMakeFiles/film.dir/film.cxx.o.d -o CMakeFiles/film.dir/film.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/film.cxx [ 71%] Linking CXX executable ../bin/average_affine cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/average_affine.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/average_affine.dir/average_affine.cxx.o -o ../bin/average_affine -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz 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../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 71%] Linking CXX executable ../bin/convert_warp cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/convert_warp.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/convert_warp.dir/convert_warp.cxx.o -o ../bin/convert_warp -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so [ 71%] Built target groupwise_init make -f apps/CMakeFiles/filter.dir/build.make apps/CMakeFiles/filter.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/filter.dir/DependInfo.cmake --color= [ 72%] Linking CXX executable ../bin/concat_affine make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/concat_affine.dir/link.txt --verbose=1 [ 72%] Built target average_affine make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/fit_affine_dfield.dir/build.make apps/CMakeFiles/fit_affine_dfield.dir/depend /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/concat_affine.dir/concat_affine.cxx.o -o ../bin/concat_affine -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/fit_affine_dfield.dir/DependInfo.cmake --color= make -f apps/CMakeFiles/filter.dir/build.make apps/CMakeFiles/filter.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/fit_affine_dfield.dir/build.make apps/CMakeFiles/fit_affine_dfield.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 72%] Building CXX object apps/CMakeFiles/filter.dir/filter.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H 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--verbose=1 [ 73%] Building CXX object apps/CMakeFiles/fit_affine_dfield.dir/fit_affine_dfield.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/fit_affine_dfield.dir/fit_affine_dfield.cxx.o -MF CMakeFiles/fit_affine_dfield.dir/fit_affine_dfield.cxx.o.d -o 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Built target destripe make -f apps/CMakeFiles/fit_affine_xform.dir/build.make apps/CMakeFiles/fit_affine_xform.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/fit_affine_xform.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/fit_affine_xform.dir/build.make apps/CMakeFiles/fit_affine_xform.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 73%] Building CXX object apps/CMakeFiles/fit_affine_xform.dir/fit_affine_xform.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/fit_affine_xform.dir/fit_affine_xform.cxx.o -MF CMakeFiles/fit_affine_xform.dir/fit_affine_xform.cxx.o.d -o CMakeFiles/fit_affine_xform.dir/fit_affine_xform.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/fit_affine_xform.cxx [ 73%] Built target convert_warp make -f apps/CMakeFiles/fit_affine_xform_landmarks.dir/build.make apps/CMakeFiles/fit_affine_xform_landmarks.dir/depend make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/fit_affine_xform_landmarks.dir/DependInfo.cmake --color= [ 73%] Built target concat_affine make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/fit_spline_dfield.dir/build.make apps/CMakeFiles/fit_spline_dfield.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/fit_spline_dfield.dir/DependInfo.cmake --color= make -f apps/CMakeFiles/fit_affine_xform_landmarks.dir/build.make apps/CMakeFiles/fit_affine_xform_landmarks.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 73%] Linking CXX executable ../bin/average_images cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/average_images.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/fit_spline_dfield.dir/build.make apps/CMakeFiles/fit_spline_dfield.dir/build [ 74%] Building CXX object apps/CMakeFiles/fit_affine_xform_landmarks.dir/fit_affine_xform_landmarks.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/fit_affine_xform_landmarks.dir/fit_affine_xform_landmarks.cxx.o -MF CMakeFiles/fit_affine_xform_landmarks.dir/fit_affine_xform_landmarks.cxx.o.d -o CMakeFiles/fit_affine_xform_landmarks.dir/fit_affine_xform_landmarks.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/fit_affine_xform_landmarks.cxx make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/average_images.dir/average_images.cxx.o -o ../bin/average_images -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so [ 74%] Building CXX object apps/CMakeFiles/fit_spline_dfield.dir/fit_spline_dfield.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/fit_spline_dfield.dir/fit_spline_dfield.cxx.o -MF CMakeFiles/fit_spline_dfield.dir/fit_spline_dfield.cxx.o.d -o CMakeFiles/fit_spline_dfield.dir/fit_spline_dfield.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/fit_spline_dfield.cxx make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 74%] Built target describe make -f apps/CMakeFiles/fit_spline_xform.dir/build.make apps/CMakeFiles/fit_spline_xform.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/fit_spline_xform.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/fit_spline_xform.dir/build.make apps/CMakeFiles/fit_spline_xform.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 74%] Building CXX object apps/CMakeFiles/fit_spline_xform.dir/fit_spline_xform.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/fit_spline_xform.dir/fit_spline_xform.cxx.o -MF CMakeFiles/fit_spline_xform.dir/fit_spline_xform.cxx.o.d -o CMakeFiles/fit_spline_xform.dir/fit_spline_xform.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/fit_spline_xform.cxx [ 74%] Linking CXX executable ../bin/epiunwarp cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/epiunwarp.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/epiunwarp.dir/epiunwarp.cxx.o -o ../bin/epiunwarp -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so [ 74%] Built target average_images make -f apps/CMakeFiles/geomatch.dir/build.make apps/CMakeFiles/geomatch.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/geomatch.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/geomatch.dir/build.make apps/CMakeFiles/geomatch.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 75%] Building CXX object apps/CMakeFiles/geomatch.dir/geomatch.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/geomatch.dir/geomatch.cxx.o -MF CMakeFiles/geomatch.dir/geomatch.cxx.o.d -o CMakeFiles/geomatch.dir/geomatch.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/geomatch.cxx make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 75%] Built target epiunwarp make -f apps/CMakeFiles/glm.dir/build.make apps/CMakeFiles/glm.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/glm.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/glm.dir/build.make apps/CMakeFiles/glm.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 75%] Building CXX object apps/CMakeFiles/glm.dir/glm.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/glm.dir/glm.cxx.o -MF CMakeFiles/glm.dir/glm.cxx.o.d -o CMakeFiles/glm.dir/glm.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/glm.cxx [ 76%] Linking CXX executable ../bin/dwi_mask_bad_slices cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/dwi_mask_bad_slices.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/dwi_mask_bad_slices.dir/dwi_mask_bad_slices.cxx.o -o ../bin/dwi_mask_bad_slices -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so [ 76%] Linking CXX executable ../bin/avg_adm cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/avg_adm.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/avg_adm.dir/avg_adm.cxx.o -o ../bin/avg_adm -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 76%] Built target dwi_mask_bad_slices make -f apps/CMakeFiles/gmm.dir/build.make apps/CMakeFiles/gmm.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/gmm.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/gmm.dir/build.make apps/CMakeFiles/gmm.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 76%] Building CXX object apps/CMakeFiles/gmm.dir/gmm.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/gmm.dir/gmm.cxx.o -MF CMakeFiles/gmm.dir/gmm.cxx.o.d -o CMakeFiles/gmm.dir/gmm.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/gmm.cxx make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 76%] Built target avg_adm make -f apps/CMakeFiles/gregxform.dir/build.make apps/CMakeFiles/gregxform.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/gregxform.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/gregxform.dir/build.make apps/CMakeFiles/gregxform.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 76%] Building CXX object apps/CMakeFiles/gregxform.dir/gregxform.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/gregxform.dir/gregxform.cxx.o -MF CMakeFiles/gregxform.dir/gregxform.cxx.o.d -o CMakeFiles/gregxform.dir/gregxform.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/gregxform.cxx [ 76%] Linking CXX executable ../bin/fib2image cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/fib2image.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/fib2image.dir/fib2image.cxx.o -o ../bin/fib2image -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so [ 76%] Linking CXX executable ../bin/fit_affine_dfield cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/fit_affine_dfield.dir/link.txt --verbose=1 [ 76%] Linking CXX executable ../bin/groupwise_warp cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/groupwise_warp.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/fit_affine_dfield.dir/fit_affine_dfield.cxx.o -o ../bin/fit_affine_dfield -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/groupwise_warp.dir/groupwise_warp.cxx.o -o ../bin/groupwise_warp -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 76%] Built target fib2image make -f apps/CMakeFiles/hausdorff.dir/build.make apps/CMakeFiles/hausdorff.dir/depend [ 76%] Linking CXX executable ../bin/fibxform make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/hausdorff.dir/DependInfo.cmake --color= cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/fibxform.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/hausdorff.dir/build.make apps/CMakeFiles/hausdorff.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/fibxform.dir/fibxform.cxx.o -o ../bin/fibxform -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so [ 76%] Building CXX object apps/CMakeFiles/hausdorff.dir/hausdorff.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/hausdorff.dir/hausdorff.cxx.o -MF CMakeFiles/hausdorff.dir/hausdorff.cxx.o.d -o CMakeFiles/hausdorff.dir/hausdorff.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/hausdorff.cxx make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 76%] Built target fit_affine_dfield make -f apps/CMakeFiles/histogram.dir/build.make apps/CMakeFiles/histogram.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/histogram.dir/DependInfo.cmake --color= [ 76%] Built target groupwise_warp make -f apps/CMakeFiles/imagemath.dir/build.make apps/CMakeFiles/imagemath.dir/depend make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/imagemath.dir/DependInfo.cmake --color= make -f apps/CMakeFiles/histogram.dir/build.make apps/CMakeFiles/histogram.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/imagemath.dir/build.make apps/CMakeFiles/imagemath.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 76%] Building CXX object apps/CMakeFiles/histogram.dir/histogram.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/histogram.dir/histogram.cxx.o -MF CMakeFiles/histogram.dir/histogram.cxx.o.d -o CMakeFiles/histogram.dir/histogram.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/histogram.cxx [ 76%] Building CXX object apps/CMakeFiles/imagemath.dir/imagemath.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/imagemath.dir/imagemath.cxx.o -MF CMakeFiles/imagemath.dir/imagemath.cxx.o.d -o CMakeFiles/imagemath.dir/imagemath.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/imagemath.cxx make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 76%] Built target fibxform make -f apps/CMakeFiles/interleaved_bad_slices.dir/build.make apps/CMakeFiles/interleaved_bad_slices.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/interleaved_bad_slices.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/interleaved_bad_slices.dir/build.make apps/CMakeFiles/interleaved_bad_slices.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 77%] Building CXX object apps/CMakeFiles/interleaved_bad_slices.dir/interleaved_bad_slices.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/interleaved_bad_slices.dir/interleaved_bad_slices.cxx.o -MF CMakeFiles/interleaved_bad_slices.dir/interleaved_bad_slices.cxx.o.d -o CMakeFiles/interleaved_bad_slices.dir/interleaved_bad_slices.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/interleaved_bad_slices.cxx [ 77%] Linking CXX executable ../bin/groupwise_affine cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/groupwise_affine.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/groupwise_affine.dir/groupwise_affine.cxx.o -o ../bin/groupwise_affine -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so [ 77%] Linking CXX executable ../bin/fit_affine_xform_landmarks cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/fit_affine_xform_landmarks.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/fit_affine_xform_landmarks.dir/fit_affine_xform_landmarks.cxx.o -o ../bin/fit_affine_xform_landmarks -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so /build/cmtk-3.3.1p2+dfsg/apps/gregxform.cxx: In function 'int doMain(int, const char**)': /build/cmtk-3.3.1p2+dfsg/apps/gregxform.cxx:191:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 191 | fgets( line, 80, infile ); | ~~~~~^~~~~~~~~~~~~~~~~~~~ [ 77%] Linking CXX executable ../bin/convertx cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/convertx.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/convertx.dir/convertx.cxx.o -o ../bin/convertx -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 77%] Built target fit_affine_xform_landmarks make -f apps/CMakeFiles/jidb.dir/build.make apps/CMakeFiles/jidb.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/jidb.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/jidb.dir/build.make apps/CMakeFiles/jidb.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 77%] Building CXX object apps/CMakeFiles/jidb.dir/jidb.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/jidb.dir/jidb.cxx.o -MF CMakeFiles/jidb.dir/jidb.cxx.o.d -o CMakeFiles/jidb.dir/jidb.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/jidb.cxx [ 77%] Built target groupwise_affine make -f apps/CMakeFiles/levelset.dir/build.make apps/CMakeFiles/levelset.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/levelset.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/levelset.dir/build.make apps/CMakeFiles/levelset.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 77%] Building CXX object apps/CMakeFiles/levelset.dir/levelset.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/levelset.dir/levelset.cxx.o -MF CMakeFiles/levelset.dir/levelset.cxx.o.d -o CMakeFiles/levelset.dir/levelset.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/levelset.cxx [ 77%] Built target convertx make -f apps/CMakeFiles/lsba.dir/build.make apps/CMakeFiles/lsba.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/lsba.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/lsba.dir/build.make apps/CMakeFiles/lsba.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 77%] Building CXX object apps/CMakeFiles/lsba.dir/lsba.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/lsba.dir/lsba.cxx.o -MF CMakeFiles/lsba.dir/lsba.cxx.o.d -o CMakeFiles/lsba.dir/lsba.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/lsba.cxx [ 78%] Linking CXX executable ../bin/filter cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/filter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/filter.dir/filter.cxx.o -o ../bin/filter -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 78%] Built target filter make -f apps/CMakeFiles/lmsba.dir/build.make apps/CMakeFiles/lmsba.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/lmsba.dir/DependInfo.cmake --color= [ 78%] Linking CXX executable ../bin/geomatch cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/geomatch.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/lmsba.dir/build.make apps/CMakeFiles/lmsba.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/geomatch.dir/geomatch.cxx.o -o ../bin/geomatch -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so [ 78%] Building CXX object apps/CMakeFiles/lmsba.dir/lmsba.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/lmsba.dir/lmsba.cxx.o -MF CMakeFiles/lmsba.dir/lmsba.cxx.o.d -o CMakeFiles/lmsba.dir/lmsba.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/lmsba.cxx make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 78%] Built target geomatch make -f apps/CMakeFiles/lvote.dir/build.make apps/CMakeFiles/lvote.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/lvote.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/lvote.dir/build.make apps/CMakeFiles/lvote.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 79%] Building CXX object apps/CMakeFiles/lvote.dir/lvote.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/lvote.dir/lvote.cxx.o -MF CMakeFiles/lvote.dir/lvote.cxx.o.d -o CMakeFiles/lvote.dir/lvote.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/lvote.cxx [ 79%] Linking CXX executable ../bin/fit_affine_xform cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/fit_affine_xform.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/fit_affine_xform.dir/fit_affine_xform.cxx.o -o ../bin/fit_affine_xform -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so [ 79%] Linking CXX executable ../bin/fit_spline_dfield cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/fit_spline_dfield.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/fit_spline_dfield.dir/fit_spline_dfield.cxx.o -o ../bin/fit_spline_dfield -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 79%] Built target fit_affine_xform make -f apps/CMakeFiles/make_initial_affine.dir/build.make apps/CMakeFiles/make_initial_affine.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/make_initial_affine.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/make_initial_affine.dir/build.make apps/CMakeFiles/make_initial_affine.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 79%] Building CXX object apps/CMakeFiles/make_initial_affine.dir/make_initial_affine.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/make_initial_affine.dir/make_initial_affine.cxx.o -MF CMakeFiles/make_initial_affine.dir/make_initial_affine.cxx.o.d -o CMakeFiles/make_initial_affine.dir/make_initial_affine.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/make_initial_affine.cxx [ 79%] Built target fit_spline_dfield make -f apps/CMakeFiles/mat2dof.dir/build.make apps/CMakeFiles/mat2dof.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mat2dof.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/mat2dof.dir/build.make apps/CMakeFiles/mat2dof.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 79%] Building CXX object apps/CMakeFiles/mat2dof.dir/mat2dof.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/mat2dof.dir/mat2dof.cxx.o -MF CMakeFiles/mat2dof.dir/mat2dof.cxx.o.d -o CMakeFiles/mat2dof.dir/mat2dof.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/mat2dof.cxx [ 80%] Linking CXX executable ../bin/levelset cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/levelset.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/levelset.dir/levelset.cxx.o -o ../bin/levelset -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so [ 81%] Linking CXX executable ../bin/hausdorff cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/hausdorff.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/hausdorff.dir/hausdorff.cxx.o -o ../bin/hausdorff -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 81%] Built target levelset make -f apps/CMakeFiles/mk_adni_phantom.dir/build.make apps/CMakeFiles/mk_adni_phantom.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mk_adni_phantom.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/mk_adni_phantom.dir/build.make apps/CMakeFiles/mk_adni_phantom.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 82%] Building CXX object apps/CMakeFiles/mk_adni_phantom.dir/mk_adni_phantom.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/mk_adni_phantom.dir/mk_adni_phantom.cxx.o -MF CMakeFiles/mk_adni_phantom.dir/mk_adni_phantom.cxx.o.d -o CMakeFiles/mk_adni_phantom.dir/mk_adni_phantom.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/mk_adni_phantom.cxx make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 82%] Built target hausdorff make -f apps/CMakeFiles/mk_analyze_hdr.dir/build.make apps/CMakeFiles/mk_analyze_hdr.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mk_analyze_hdr.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/mk_analyze_hdr.dir/build.make apps/CMakeFiles/mk_analyze_hdr.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 82%] Building CXX object apps/CMakeFiles/mk_analyze_hdr.dir/mk_analyze_hdr.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/mk_analyze_hdr.dir/mk_analyze_hdr.cxx.o -MF CMakeFiles/mk_analyze_hdr.dir/mk_analyze_hdr.cxx.o.d -o CMakeFiles/mk_analyze_hdr.dir/mk_analyze_hdr.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/mk_analyze_hdr.cxx [ 82%] Linking CXX executable ../bin/fit_spline_xform [ 82%] Linking CXX executable ../bin/gregxform cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/fit_spline_xform.dir/link.txt --verbose=1 cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/gregxform.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/fit_spline_xform.dir/fit_spline_xform.cxx.o -o ../bin/fit_spline_xform -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/gregxform.dir/gregxform.cxx.o -o ../bin/gregxform -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 82%] Built target fit_spline_xform make -f apps/CMakeFiles/mk_nifti_hdr.dir/build.make apps/CMakeFiles/mk_nifti_hdr.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mk_nifti_hdr.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/mk_nifti_hdr.dir/build.make apps/CMakeFiles/mk_nifti_hdr.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 82%] Building CXX object apps/CMakeFiles/mk_nifti_hdr.dir/mk_nifti_hdr.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/mk_nifti_hdr.dir/mk_nifti_hdr.cxx.o -MF CMakeFiles/mk_nifti_hdr.dir/mk_nifti_hdr.cxx.o.d -o CMakeFiles/mk_nifti_hdr.dir/mk_nifti_hdr.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/mk_nifti_hdr.cxx make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 82%] Built target gregxform make -f apps/CMakeFiles/mk_phantom_3d.dir/build.make apps/CMakeFiles/mk_phantom_3d.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mk_phantom_3d.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/mk_phantom_3d.dir/build.make apps/CMakeFiles/mk_phantom_3d.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 82%] Building CXX object apps/CMakeFiles/mk_phantom_3d.dir/mk_phantom_3d.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/mk_phantom_3d.dir/mk_phantom_3d.cxx.o -MF CMakeFiles/mk_phantom_3d.dir/mk_phantom_3d.cxx.o.d -o CMakeFiles/mk_phantom_3d.dir/mk_phantom_3d.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/mk_phantom_3d.cxx [ 82%] Linking CXX executable ../bin/glm cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/glm.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/glm.dir/glm.cxx.o -o ../bin/glm -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so [ 83%] Linking CXX executable ../bin/gmm cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmm.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/gmm.dir/gmm.cxx.o -o ../bin/gmm -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 83%] Built target glm make -f apps/CMakeFiles/mrbias.dir/build.make apps/CMakeFiles/mrbias.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mrbias.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/mrbias.dir/build.make apps/CMakeFiles/mrbias.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 83%] Building CXX object apps/CMakeFiles/mrbias.dir/mrbias.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/mrbias.dir/mrbias.cxx.o -MF CMakeFiles/mrbias.dir/mrbias.cxx.o.d -o CMakeFiles/mrbias.dir/mrbias.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/mrbias.cxx make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 83%] Built target gmm make -f apps/CMakeFiles/overlap.dir/build.make apps/CMakeFiles/overlap.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/overlap.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/overlap.dir/build.make apps/CMakeFiles/overlap.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 84%] Building CXX object apps/CMakeFiles/overlap.dir/overlap.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/overlap.dir/overlap.cxx.o -MF CMakeFiles/overlap.dir/overlap.cxx.o.d -o CMakeFiles/overlap.dir/overlap.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/overlap.cxx [ 84%] Linking CXX executable ../bin/interleaved_bad_slices cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/interleaved_bad_slices.dir/link.txt --verbose=1 [ 84%] Linking CXX executable ../bin/film cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/film.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/interleaved_bad_slices.dir/interleaved_bad_slices.cxx.o -o ../bin/interleaved_bad_slices -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/film.dir/film.cxx.o -o ../bin/film -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so [ 84%] Linking CXX executable ../bin/histogram cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/histogram.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/histogram.dir/histogram.cxx.o -o ../bin/histogram -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so /build/cmtk-3.3.1p2+dfsg/apps/mk_phantom_3d.cxx: In function 'int doMain(int, const char**)': /build/cmtk-3.3.1p2+dfsg/apps/mk_phantom_3d.cxx:192:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 192 | std::auto_ptr fileformat( new DcmFileFormat ); | ^~~~~~~~ In file included from /usr/include/c++/12/memory:76, from /build/cmtk-3.3.1p2+dfsg/apps/mk_phantom_3d.cxx:46: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 84%] Built target interleaved_bad_slices make -f apps/CMakeFiles/probe.dir/build.make apps/CMakeFiles/probe.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/probe.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/probe.dir/build.make apps/CMakeFiles/probe.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 84%] Building CXX object apps/CMakeFiles/probe.dir/probe.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/probe.dir/probe.cxx.o -MF CMakeFiles/probe.dir/probe.cxx.o.d -o CMakeFiles/probe.dir/probe.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/probe.cxx make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 84%] Built target histogram make -f apps/CMakeFiles/pxsearch.dir/build.make apps/CMakeFiles/pxsearch.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/pxsearch.dir/DependInfo.cmake --color= [ 84%] Built target film make -f apps/CMakeFiles/reformatx.dir/build.make apps/CMakeFiles/reformatx.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/reformatx.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/pxsearch.dir/build.make apps/CMakeFiles/pxsearch.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/reformatx.dir/build.make apps/CMakeFiles/reformatx.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 84%] Building CXX object apps/CMakeFiles/pxsearch.dir/pxsearch.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/pxsearch.dir/pxsearch.cxx.o -MF CMakeFiles/pxsearch.dir/pxsearch.cxx.o.d -o CMakeFiles/pxsearch.dir/pxsearch.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/pxsearch.cxx [ 85%] Building CXX object apps/CMakeFiles/reformatx.dir/reformatx.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/reformatx.dir/reformatx.cxx.o -MF CMakeFiles/reformatx.dir/reformatx.cxx.o.d -o CMakeFiles/reformatx.dir/reformatx.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/reformatx.cxx [ 85%] Linking CXX executable ../bin/lsba cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/lsba.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/lsba.dir/lsba.cxx.o -o ../bin/lsba -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 85%] Built target lsba make -f apps/CMakeFiles/registration.dir/build.make apps/CMakeFiles/registration.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/registration.dir/DependInfo.cmake --color= [ 85%] Linking CXX executable ../bin/lmsba cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/lmsba.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/registration.dir/build.make apps/CMakeFiles/registration.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/lmsba.dir/lmsba.cxx.o -o ../bin/lmsba -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so [ 85%] Building CXX object apps/CMakeFiles/registration.dir/registration.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/registration.dir/registration.cxx.o -MF CMakeFiles/registration.dir/registration.cxx.o.d -o CMakeFiles/registration.dir/registration.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/registration.cxx [ 85%] Linking CXX executable ../bin/lvote cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/lvote.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/lvote.dir/lvote.cxx.o -o ../bin/lvote -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 85%] Built target lmsba make -f apps/CMakeFiles/registrationx.dir/build.make apps/CMakeFiles/registrationx.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/registrationx.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/registrationx.dir/build.make apps/CMakeFiles/registrationx.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 85%] Linking CXX executable ../bin/make_initial_affine cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/make_initial_affine.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/make_initial_affine.dir/make_initial_affine.cxx.o -o ../bin/make_initial_affine -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so [ 85%] Building CXX object apps/CMakeFiles/registrationx.dir/registrationx.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/registrationx.dir/registrationx.cxx.o -MF CMakeFiles/registrationx.dir/registrationx.cxx.o.d -o CMakeFiles/registrationx.dir/registrationx.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/registrationx.cxx make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 85%] Built target lvote make -f apps/CMakeFiles/regress.dir/build.make apps/CMakeFiles/regress.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/regress.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/regress.dir/build.make apps/CMakeFiles/regress.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 85%] Building CXX object apps/CMakeFiles/regress.dir/regress.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/regress.dir/regress.cxx.o -MF CMakeFiles/regress.dir/regress.cxx.o.d -o CMakeFiles/regress.dir/regress.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/regress.cxx [ 85%] Linking CXX executable ../bin/imagemath cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/imagemath.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/imagemath.dir/imagemath.cxx.o -o ../bin/imagemath -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 85%] Built target make_initial_affine make -f apps/CMakeFiles/reorient.dir/build.make apps/CMakeFiles/reorient.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/reorient.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/reorient.dir/build.make apps/CMakeFiles/reorient.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 85%] Building CXX object apps/CMakeFiles/reorient.dir/reorient.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/reorient.dir/reorient.cxx.o -MF CMakeFiles/reorient.dir/reorient.cxx.o.d -o CMakeFiles/reorient.dir/reorient.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/reorient.cxx [ 85%] Linking CXX executable ../bin/mk_analyze_hdr cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/mk_analyze_hdr.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/mk_analyze_hdr.dir/mk_analyze_hdr.cxx.o -o ../bin/mk_analyze_hdr -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so [ 86%] Linking CXX executable ../bin/mat2dof cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/mat2dof.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/mat2dof.dir/mat2dof.cxx.o -o ../bin/mat2dof -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so [ 86%] Built target imagemath make -f apps/CMakeFiles/sba.dir/build.make apps/CMakeFiles/sba.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/sba.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/sba.dir/build.make apps/CMakeFiles/sba.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 87%] Building CXX object apps/CMakeFiles/sba.dir/sba.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/sba.dir/sba.cxx.o -MF CMakeFiles/sba.dir/sba.cxx.o.d -o CMakeFiles/sba.dir/sba.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/sba.cxx [ 87%] Linking CXX executable ../bin/mk_adni_phantom cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/mk_adni_phantom.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/mk_adni_phantom.dir/mk_adni_phantom.cxx.o -o ../bin/mk_adni_phantom -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 87%] Built target mk_analyze_hdr make -f apps/CMakeFiles/sbai.dir/build.make apps/CMakeFiles/sbai.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/sbai.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/sbai.dir/build.make apps/CMakeFiles/sbai.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 87%] Building CXX object apps/CMakeFiles/sbai.dir/sbai.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/sbai.dir/sbai.cxx.o -MF CMakeFiles/sbai.dir/sbai.cxx.o.d -o CMakeFiles/sbai.dir/sbai.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/sbai.cxx make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 87%] Built target mat2dof make -f apps/CMakeFiles/sequence.dir/build.make apps/CMakeFiles/sequence.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/sequence.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/sequence.dir/build.make apps/CMakeFiles/sequence.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 87%] Building CXX object apps/CMakeFiles/sequence.dir/sequence.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/sequence.dir/sequence.cxx.o -MF CMakeFiles/sequence.dir/sequence.cxx.o.d -o CMakeFiles/sequence.dir/sequence.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/sequence.cxx [ 87%] Built target mk_adni_phantom make -f apps/CMakeFiles/similarity.dir/build.make apps/CMakeFiles/similarity.dir/depend [ 88%] Linking CXX executable ../bin/mk_nifti_hdr make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/similarity.dir/DependInfo.cmake --color= cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/mk_nifti_hdr.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/mk_nifti_hdr.dir/mk_nifti_hdr.cxx.o -o ../bin/mk_nifti_hdr -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/similarity.dir/build.make apps/CMakeFiles/similarity.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 88%] Building CXX object apps/CMakeFiles/similarity.dir/similarity.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/similarity.dir/similarity.cxx.o -MF CMakeFiles/similarity.dir/similarity.cxx.o.d -o CMakeFiles/similarity.dir/similarity.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/similarity.cxx make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 88%] Built target mk_nifti_hdr make -f apps/CMakeFiles/split.dir/build.make apps/CMakeFiles/split.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/split.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/split.dir/build.make apps/CMakeFiles/split.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 88%] Building CXX object apps/CMakeFiles/split.dir/split.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/split.dir/split.cxx.o -MF CMakeFiles/split.dir/split.cxx.o.d -o CMakeFiles/split.dir/split.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/split.cxx [ 88%] Linking CXX executable ../bin/registration cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/registration.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/registration.dir/registration.cxx.o -o ../bin/registration -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so [ 88%] Linking CXX executable ../bin/jidb cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/jidb.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/jidb.dir/jidb.cxx.o -o ../bin/jidb -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 88%] Built target registration make -f apps/CMakeFiles/statistics.dir/build.make apps/CMakeFiles/statistics.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/statistics.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/statistics.dir/build.make apps/CMakeFiles/statistics.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 89%] Linking CXX executable ../bin/registrationx cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/registrationx.dir/link.txt --verbose=1 [ 90%] Building CXX object apps/CMakeFiles/statistics.dir/statistics.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/statistics.dir/statistics.cxx.o -MF CMakeFiles/statistics.dir/statistics.cxx.o.d -o CMakeFiles/statistics.dir/statistics.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/statistics.cxx /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/registrationx.dir/registrationx.cxx.o -o ../bin/registrationx -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 90%] Built target jidb make -f apps/CMakeFiles/stream_pixels.dir/build.make apps/CMakeFiles/stream_pixels.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/stream_pixels.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/stream_pixels.dir/build.make apps/CMakeFiles/stream_pixels.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 90%] Building CXX object apps/CMakeFiles/stream_pixels.dir/stream_pixels.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/stream_pixels.dir/stream_pixels.cxx.o -MF CMakeFiles/stream_pixels.dir/stream_pixels.cxx.o.d -o CMakeFiles/stream_pixels.dir/stream_pixels.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/stream_pixels.cxx make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 90%] Built target registrationx make -f apps/CMakeFiles/streamxform.dir/build.make apps/CMakeFiles/streamxform.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/streamxform.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/streamxform.dir/build.make apps/CMakeFiles/streamxform.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 90%] Building CXX object apps/CMakeFiles/streamxform.dir/streamxform.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/streamxform.dir/streamxform.cxx.o -MF CMakeFiles/streamxform.dir/streamxform.cxx.o.d -o CMakeFiles/streamxform.dir/streamxform.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/streamxform.cxx [ 90%] Linking CXX executable ../bin/overlap cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/overlap.dir/link.txt --verbose=1 [ 90%] Linking CXX executable ../bin/mk_phantom_3d cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/mk_phantom_3d.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/overlap.dir/overlap.cxx.o -o ../bin/overlap -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/mk_phantom_3d.dir/mk_phantom_3d.cxx.o -o ../bin/mk_phantom_3d -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 90%] Built target overlap make -f apps/CMakeFiles/sympl.dir/build.make apps/CMakeFiles/sympl.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/sympl.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/sympl.dir/build.make apps/CMakeFiles/sympl.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 90%] Building CXX object apps/CMakeFiles/sympl.dir/sympl.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/sympl.dir/sympl.cxx.o -MF CMakeFiles/sympl.dir/sympl.cxx.o.d -o CMakeFiles/sympl.dir/sympl.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/sympl.cxx [ 90%] Built target mk_phantom_3d make -f apps/CMakeFiles/symplx.dir/build.make apps/CMakeFiles/symplx.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/symplx.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/symplx.dir/build.make apps/CMakeFiles/symplx.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 90%] Building CXX object apps/CMakeFiles/symplx.dir/symplx.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/symplx.dir/symplx.cxx.o -MF CMakeFiles/symplx.dir/symplx.cxx.o.d -o CMakeFiles/symplx.dir/symplx.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/symplx.cxx [ 90%] Linking CXX executable ../bin/pxsearch cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/pxsearch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/pxsearch.dir/pxsearch.cxx.o -o ../bin/pxsearch -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so [ 90%] Linking CXX executable ../bin/reorient cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/reorient.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/reorient.dir/reorient.cxx.o -o ../bin/reorient -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 90%] Built target pxsearch make -f apps/CMakeFiles/ttest.dir/build.make apps/CMakeFiles/ttest.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/ttest.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/ttest.dir/build.make apps/CMakeFiles/ttest.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 91%] Building CXX object apps/CMakeFiles/ttest.dir/ttest.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/ttest.dir/ttest.cxx.o -MF CMakeFiles/ttest.dir/ttest.cxx.o.d -o CMakeFiles/ttest.dir/ttest.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/ttest.cxx make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 91%] Built target reorient make -f apps/CMakeFiles/unsplit.dir/build.make apps/CMakeFiles/unsplit.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/unsplit.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/unsplit.dir/build.make apps/CMakeFiles/unsplit.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 91%] Building CXX object apps/CMakeFiles/unsplit.dir/unsplit.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/unsplit.dir/unsplit.cxx.o -MF CMakeFiles/unsplit.dir/unsplit.cxx.o.d -o CMakeFiles/unsplit.dir/unsplit.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/unsplit.cxx [ 91%] Linking CXX executable ../bin/probe cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/probe.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/probe.dir/probe.cxx.o -o ../bin/probe -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so [ 91%] Linking CXX executable ../bin/symplx cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/symplx.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/symplx.dir/symplx.cxx.o -o ../bin/symplx -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so [ 91%] Built target probe make -f apps/CMakeFiles/unwarp_image_phantom.dir/build.make apps/CMakeFiles/unwarp_image_phantom.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/unwarp_image_phantom.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/unwarp_image_phantom.dir/build.make apps/CMakeFiles/unwarp_image_phantom.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 91%] Building CXX object apps/CMakeFiles/unwarp_image_phantom.dir/unwarp_image_phantom.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/unwarp_image_phantom.dir/unwarp_image_phantom.cxx.o -MF CMakeFiles/unwarp_image_phantom.dir/unwarp_image_phantom.cxx.o.d -o CMakeFiles/unwarp_image_phantom.dir/unwarp_image_phantom.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/unwarp_image_phantom.cxx [ 91%] Linking CXX executable ../bin/sba cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/sba.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/sba.dir/sba.cxx.o -o ../bin/sba -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so [ 91%] Linking CXX executable ../bin/mrbias cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/mrbias.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/mrbias.dir/mrbias.cxx.o -o ../bin/mrbias -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 91%] Built target symplx make -f apps/CMakeFiles/vol2csv.dir/build.make apps/CMakeFiles/vol2csv.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/vol2csv.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/vol2csv.dir/build.make apps/CMakeFiles/vol2csv.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 91%] Building CXX object apps/CMakeFiles/vol2csv.dir/vol2csv.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/vol2csv.dir/vol2csv.cxx.o -MF CMakeFiles/vol2csv.dir/vol2csv.cxx.o.d -o CMakeFiles/vol2csv.dir/vol2csv.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/vol2csv.cxx [ 92%] Linking CXX executable ../bin/sequence cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/sequence.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/sequence.dir/sequence.cxx.o -o ../bin/sequence -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 92%] Built target mrbias make -f apps/CMakeFiles/volume_injection.dir/build.make apps/CMakeFiles/volume_injection.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/volume_injection.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/volume_injection.dir/build.make apps/CMakeFiles/volume_injection.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 92%] Built target sequence make -f apps/CMakeFiles/volume_reconstruction.dir/build.make apps/CMakeFiles/volume_reconstruction.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/volume_reconstruction.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 92%] Building CXX object apps/CMakeFiles/volume_injection.dir/volume_injection.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/volume_injection.dir/volume_injection.cxx.o -MF CMakeFiles/volume_injection.dir/volume_injection.cxx.o.d -o CMakeFiles/volume_injection.dir/volume_injection.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/volume_injection.cxx make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/volume_reconstruction.dir/build.make apps/CMakeFiles/volume_reconstruction.dir/build [ 92%] Built target sba make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/vtkxform.dir/build.make apps/CMakeFiles/vtkxform.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/vtkxform.dir/DependInfo.cmake --color= [ 93%] Building CXX object apps/CMakeFiles/volume_reconstruction.dir/volume_reconstruction.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/volume_reconstruction.dir/volume_reconstruction.cxx.o -MF CMakeFiles/volume_reconstruction.dir/volume_reconstruction.cxx.o.d -o CMakeFiles/volume_reconstruction.dir/volume_reconstruction.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/volume_reconstruction.cxx make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/vtkxform.dir/build.make apps/CMakeFiles/vtkxform.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 93%] Building CXX object apps/CMakeFiles/vtkxform.dir/vtkxform.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/vtkxform.dir/vtkxform.cxx.o -MF CMakeFiles/vtkxform.dir/vtkxform.cxx.o.d -o CMakeFiles/vtkxform.dir/vtkxform.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/vtkxform.cxx [ 93%] Linking CXX executable ../bin/regress cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/regress.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/regress.dir/regress.cxx.o -o ../bin/regress -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so [ 93%] Linking CXX executable ../bin/similarity cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/similarity.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/similarity.dir/similarity.cxx.o -o ../bin/similarity -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so [ 93%] Linking CXX executable ../bin/sbai cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/sbai.dir/link.txt --verbose=1 [ 93%] Linking CXX executable ../bin/stream_pixels cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/stream_pixels.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/sbai.dir/sbai.cxx.o -o ../bin/sbai -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/stream_pixels.dir/stream_pixels.cxx.o -o ../bin/stream_pixels -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 93%] Built target regress make -f apps/CMakeFiles/warp.dir/build.make apps/CMakeFiles/warp.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/warp.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/warp.dir/build.make apps/CMakeFiles/warp.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 93%] Built target similarity make -f apps/CMakeFiles/warpx.dir/build.make apps/CMakeFiles/warpx.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/warpx.dir/DependInfo.cmake --color= [ 93%] Building CXX object apps/CMakeFiles/warp.dir/warp.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/warp.dir/warp.cxx.o -MF CMakeFiles/warp.dir/warp.cxx.o.d -o CMakeFiles/warp.dir/warp.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/warp.cxx make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/warpx.dir/build.make apps/CMakeFiles/warpx.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 93%] Linking CXX executable ../bin/split [ 93%] Building CXX object apps/CMakeFiles/warpx.dir/warpx.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/split.dir/link.txt --verbose=1 cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/warpx.dir/warpx.cxx.o -MF CMakeFiles/warpx.dir/warpx.cxx.o.d -o CMakeFiles/warpx.dir/warpx.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/warpx.cxx make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/split.dir/split.cxx.o -o ../bin/split -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so [ 93%] Built target sbai make -f apps/CMakeFiles/warp2ps.dir/build.make apps/CMakeFiles/warp2ps.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/warp2ps.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/warp2ps.dir/build.make apps/CMakeFiles/warp2ps.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 93%] Building CXX object apps/CMakeFiles/warp2ps.dir/warp2ps.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/warp2ps.dir/warp2ps.cxx.o -MF CMakeFiles/warp2ps.dir/warp2ps.cxx.o.d -o CMakeFiles/warp2ps.dir/warp2ps.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/warp2ps.cxx make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 93%] Built target stream_pixels make -f apps/CMakeFiles/xform2dfield.dir/build.make apps/CMakeFiles/xform2dfield.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/xform2dfield.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/xform2dfield.dir/build.make apps/CMakeFiles/xform2dfield.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 94%] Building CXX object apps/CMakeFiles/xform2dfield.dir/xform2dfield.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/xform2dfield.dir/xform2dfield.cxx.o -MF CMakeFiles/xform2dfield.dir/xform2dfield.cxx.o.d -o CMakeFiles/xform2dfield.dir/xform2dfield.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/xform2dfield.cxx make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 94%] Built target split make -f apps/CMakeFiles/xform2itk.dir/build.make apps/CMakeFiles/xform2itk.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/xform2itk.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/xform2itk.dir/build.make apps/CMakeFiles/xform2itk.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 94%] Building CXX object apps/CMakeFiles/xform2itk.dir/xform2itk.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/xform2itk.dir/xform2itk.cxx.o -MF CMakeFiles/xform2itk.dir/xform2itk.cxx.o.d -o CMakeFiles/xform2itk.dir/xform2itk.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/xform2itk.cxx /build/cmtk-3.3.1p2+dfsg/apps/vtkxform.cxx: In function 'int doMain(int, const char**)': /build/cmtk-3.3.1p2+dfsg/apps/vtkxform.cxx:190:54: warning: narrowing conversion of 'xyz.cmtk::FixedVector<3, double>::.cmtk::FixedArray<3, double>::operator[](0)' from 'double' to 'float' [-Wnarrowing] 190 | float xyzFloat[3] = { xyz[0], xyz[1], xyz[2] }; | ^ /build/cmtk-3.3.1p2+dfsg/apps/vtkxform.cxx:190:54: warning: narrowing conversion of 'xyz.cmtk::FixedVector<3, double>::.cmtk::FixedArray<3, double>::operator[](1)' from 'double' to 'float' [-Wnarrowing] /build/cmtk-3.3.1p2+dfsg/apps/vtkxform.cxx:190:54: warning: narrowing conversion of 'xyz.cmtk::FixedVector<3, double>::.cmtk::FixedArray<3, double>::operator[](2)' from 'double' to 'float' [-Wnarrowing] [ 95%] Linking CXX executable ../bin/streamxform cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/streamxform.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/streamxform.dir/streamxform.cxx.o -o ../bin/streamxform -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so [ 95%] Linking CXX executable ../bin/statistics cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/statistics.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/statistics.dir/statistics.cxx.o -o ../bin/statistics -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 95%] Built target streamxform make -f apps/CMakeFiles/xform2scalar.dir/build.make apps/CMakeFiles/xform2scalar.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/xform2scalar.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/xform2scalar.dir/build.make apps/CMakeFiles/xform2scalar.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 95%] Building CXX object apps/CMakeFiles/xform2scalar.dir/xform2scalar.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/xform2scalar.dir/xform2scalar.cxx.o -MF CMakeFiles/xform2scalar.dir/xform2scalar.cxx.o.d -o CMakeFiles/xform2scalar.dir/xform2scalar.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/xform2scalar.cxx make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 95%] Built target statistics make -f apps/CMakeFiles/dbtool.dir/build.make apps/CMakeFiles/dbtool.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/dbtool.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/dbtool.dir/build.make apps/CMakeFiles/dbtool.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 96%] Building CXX object apps/CMakeFiles/dbtool.dir/dbtool.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/dbtool.dir/dbtool.cxx.o -MF CMakeFiles/dbtool.dir/dbtool.cxx.o.d -o CMakeFiles/dbtool.dir/dbtool.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/dbtool.cxx [ 97%] Linking CXX executable ../bin/warp cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/warp.dir/link.txt --verbose=1 [ 97%] Linking CXX executable ../bin/reformatx cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/reformatx.dir/link.txt --verbose=1 [ 97%] Linking CXX executable ../bin/warpx /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/warp.dir/warp.cxx.o -o ../bin/warp -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/warpx.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/reformatx.dir/reformatx.cxx.o -o ../bin/reformatx -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/warpx.dir/warpx.cxx.o -o ../bin/warpx -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 97%] Built target warp make -f apps/CMakeFiles/asegment_sri24.dir/build.make apps/CMakeFiles/asegment_sri24.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/asegment_sri24.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/asegment_sri24.dir/build.make apps/CMakeFiles/asegment_sri24.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 97%] Building CXX object apps/CMakeFiles/asegment_sri24.dir/asegment_sri24.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/asegment_sri24.dir/asegment_sri24.cxx.o -MF CMakeFiles/asegment_sri24.dir/asegment_sri24.cxx.o.d -o CMakeFiles/asegment_sri24.dir/asegment_sri24.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/asegment_sri24.cxx [ 97%] Built target reformatx make -f apps/CMakeFiles/mcaffine.dir/build.make apps/CMakeFiles/mcaffine.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mcaffine.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/mcaffine.dir/build.make apps/CMakeFiles/mcaffine.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 97%] Building CXX object apps/CMakeFiles/mcaffine.dir/mcaffine.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/mcaffine.dir/mcaffine.cxx.o -MF CMakeFiles/mcaffine.dir/mcaffine.cxx.o.d -o CMakeFiles/mcaffine.dir/mcaffine.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/mcaffine.cxx [ 97%] Built target warpx make -f apps/CMakeFiles/mcwarp.dir/build.make apps/CMakeFiles/mcwarp.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/mcwarp.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/mcwarp.dir/build.make apps/CMakeFiles/mcwarp.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 97%] Building CXX object apps/CMakeFiles/mcwarp.dir/mcwarp.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/mcwarp.dir/mcwarp.cxx.o -MF CMakeFiles/mcwarp.dir/mcwarp.cxx.o.d -o CMakeFiles/mcwarp.dir/mcwarp.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/mcwarp.cxx [ 97%] Linking CXX executable ../bin/sympl cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script 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CMakeFiles/unsplit.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/unsplit.dir/unsplit.cxx.o -o ../bin/unsplit -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 97%] Built target sympl make -f apps/CMakeFiles/dcm2image.dir/build.make apps/CMakeFiles/dcm2image.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/dcm2image.dir/DependInfo.cmake --color= [ 97%] Built target unsplit make -f apps/CMakeFiles/detect_spheres_matched_filter.dir/build.make apps/CMakeFiles/detect_spheres_matched_filter.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu 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-I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/dcm2image.dir/dcm2image.cxx.o -MF CMakeFiles/dcm2image.dir/dcm2image.cxx.o.d -o CMakeFiles/dcm2image.dir/dcm2image.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/dcm2image.cxx [ 98%] Building CXX object apps/CMakeFiles/detect_spheres_matched_filter.dir/detect_spheres_matched_filter.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/detect_spheres_matched_filter.dir/detect_spheres_matched_filter.cxx.o -MF CMakeFiles/detect_spheres_matched_filter.dir/detect_spheres_matched_filter.cxx.o.d -o CMakeFiles/detect_spheres_matched_filter.dir/detect_spheres_matched_filter.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/detect_spheres_matched_filter.cxx [ 98%] Linking CXX executable ../bin/ttest cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/ttest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/ttest.dir/ttest.cxx.o -o ../bin/ttest -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so [ 98%] Linking CXX executable ../bin/vtkxform cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/vtkxform.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/vtkxform.dir/vtkxform.cxx.o -o ../bin/vtkxform -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 98%] Built target ttest make -f apps/CMakeFiles/detect_adni_phantom.dir/build.make apps/CMakeFiles/detect_adni_phantom.dir/depend make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/cmtk-3.3.1p2+dfsg /build/cmtk-3.3.1p2+dfsg/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps/CMakeFiles/detect_adni_phantom.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make -f apps/CMakeFiles/detect_adni_phantom.dir/build.make apps/CMakeFiles/detect_adni_phantom.dir/build make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 98%] Built target vtkxform [ 98%] Building CXX object apps/CMakeFiles/detect_adni_phantom.dir/detect_adni_phantom.cxx.o cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/c++ -DCMTK_USE_DCMTK_JPEG -DHAVE_CONFIG_H -DTEEM_ZLIB -I/build/cmtk-3.3.1p2+dfsg/Utilities/mxml -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -I/usr/include/dcmtk/config -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/oflog -I/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/Utilities/NrrdIO -I/build/cmtk-3.3.1p2+dfsg/libs -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -MD -MT apps/CMakeFiles/detect_adni_phantom.dir/detect_adni_phantom.cxx.o -MF CMakeFiles/detect_adni_phantom.dir/detect_adni_phantom.cxx.o.d -o CMakeFiles/detect_adni_phantom.dir/detect_adni_phantom.cxx.o -c /build/cmtk-3.3.1p2+dfsg/apps/detect_adni_phantom.cxx [ 98%] Linking CXX executable ../bin/vol2csv cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/vol2csv.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/vol2csv.dir/vol2csv.cxx.o -o ../bin/vol2csv -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 98%] Linking CXX executable ../bin/xform2itk cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/xform2itk.dir/link.txt --verbose=1 [ 98%] Built target vol2csv /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/xform2itk.dir/xform2itk.cxx.o -o ../bin/xform2itk -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so [ 98%] Linking CXX executable ../bin/dbtool cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/dbtool.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/dbtool.dir/dbtool.cxx.o -o ../bin/dbtool -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so In file included from /build/cmtk-3.3.1p2+dfsg/apps/dcm2image.cxx:45: /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkImageFileDICOM.h:179:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 179 | std::auto_ptr m_Dataset; | ^~~~~~~~ In file included from /usr/include/c++/12/memory:76, from /usr/include/dcmtk/ofstd/ofmem.h:32, from /usr/include/dcmtk/oflog/appender.h:33, from /usr/include/dcmtk/oflog/spi/apndatch.h:33, from /usr/include/dcmtk/oflog/logger.h:36, from /usr/include/dcmtk/oflog/oflog.h:28, from /usr/include/dcmtk/dcmdata/dctypes.h:27, from /usr/include/dcmtk/dcmdata/dctk.h:28, from /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkImageFileDICOM.h:43: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkImageFileDICOM.h:182:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 182 | std::auto_ptr m_Document; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkImageFileDICOM.h: In member function 'void cmtk::ImageFileDICOM::ReleaseDocument()': /build/cmtk-3.3.1p2+dfsg/libs/IO/cmtkImageFileDICOM.h:164:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 164 | this->m_Document = std::auto_ptr( NULL ); | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 98%] Built target xform2itk make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 98%] Built target dbtool [ 99%] Linking CXX executable ../bin/unwarp_image_phantom cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/unwarp_image_phantom.dir/link.txt --verbose=1 [ 99%] Linking CXX executable ../bin/xform2dfield cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/xform2dfield.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/unwarp_image_phantom.dir/unwarp_image_phantom.cxx.o -o ../bin/unwarp_image_phantom -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/xform2dfield.dir/xform2dfield.cxx.o -o ../bin/xform2dfield -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so [ 99%] Linking CXX executable ../bin/warp2ps cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/warp2ps.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/warp2ps.dir/warp2ps.cxx.o -o ../bin/warp2ps -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 99%] Built target unwarp_image_phantom [ 99%] Built target xform2dfield make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [ 99%] Built target warp2ps [ 99%] Linking CXX executable ../bin/volume_injection cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/volume_injection.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/volume_injection.dir/volume_injection.cxx.o -o ../bin/volume_injection -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so [100%] Linking CXX executable ../bin/xform2scalar cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/xform2scalar.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/xform2scalar.dir/xform2scalar.cxx.o -o ../bin/xform2scalar -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [100%] Built target volume_injection make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [100%] Built target xform2scalar [100%] Linking CXX executable ../bin/asegment_sri24 cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/asegment_sri24.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/asegment_sri24.dir/asegment_sri24.cxx.o -o ../bin/asegment_sri24 -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [100%] Built target asegment_sri24 [100%] Linking CXX executable ../bin/detect_spheres_matched_filter cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/detect_spheres_matched_filter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/detect_spheres_matched_filter.dir/detect_spheres_matched_filter.cxx.o -o ../bin/detect_spheres_matched_filter -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [100%] Built target detect_spheres_matched_filter [100%] Linking CXX executable ../bin/detect_adni_phantom cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/detect_adni_phantom.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/detect_adni_phantom.dir/detect_adni_phantom.cxx.o -o ../bin/detect_adni_phantom -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so [100%] Linking CXX executable ../bin/volume_reconstruction cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/volume_reconstruction.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/volume_reconstruction.dir/volume_reconstruction.cxx.o -o ../bin/volume_reconstruction -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [100%] Built target detect_adni_phantom make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [100%] Built target volume_reconstruction [100%] Linking CXX executable ../bin/dcm2image cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/dcm2image.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/dcm2image.dir/dcm2image.cxx.o -o ../bin/dcm2image -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [100%] Built target dcm2image [100%] Linking CXX executable ../bin/mcaffine cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/mcaffine.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/mcaffine.dir/mcaffine.cxx.o -o ../bin/mcaffine -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [100%] Built target mcaffine [100%] Linking CXX executable ../bin/mcwarp cd /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/apps && /usr/bin/cmake -E cmake_link_script CMakeFiles/mcwarp.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/cmtk-3.3.1p2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DHAVE_CONFIG_H -DTEEM_ZLIB -Wl,-z,relro -fopenmp -rdynamic CMakeFiles/mcwarp.dir/mcwarp.cxx.o -o ../bin/mcwarp -L/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu -Wl,-rpath,/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu:/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/bin: ../bin/libcmtkSegmentation.so ../bin/libcmtkRecon.so ../bin/libcmtkRegistration.so ../bin/libcmtkIO.so ../bin/libcmtkBase.so ../bin/libcmtkNumerics.so ../bin/libcmtkSystem.so ../bin/libNrrdIO.so -lsqlite3 -ldcmdata -ldcmimage -ldcmimgle -ldcmjpeg -ldcmjpls -lijg12 -lijg16 -lijg8 -loflog -lofstd -lbz2 -lfftw3_omp -lfftw3 -lfftw3_threads -lz ../bin/libcmtkMxml.so make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' [100%] Built target mcwarp make[2]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' rm -f debian/cmtk.debhelper.log debian/rules override_dh_auto_test make[1]: Entering directory '/build/cmtk-3.3.1p2+dfsg' ARGS=--verbose xvfb-run --auto-servernum --server-num=20 \ dh_auto_test cd obj-x86_64-linux-gnu && make -j16 test ARGS\+=--verbose ARGS\+=-j16 make[2]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process --auto-servernum --server-num '20' -- 'dh_auto_test' --verbose -j16 UpdateCTestConfiguration from :/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/DartConfiguration.tcl Add coverage exclude regular expressions. Add coverage exclude: .*/Utilities/.* UpdateCTestConfiguration from :/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu/DartConfiguration.tcl Test project /build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end No tests were found!!! make[2]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' rm -fr -- /tmp/dh-xdg-rundir-qKvfs_PJ make[1]: Leaving directory '/build/cmtk-3.3.1p2+dfsg' create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/cmtk.substvars rm -fr -- debian/.debhelper/generated/cmtk/ debian/cmtk/ debian/tmp/ dh_installdirs install -m0755 -d debian/cmtk/etc/cmtk rm -f debian/cmtk.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/build/cmtk-3.3.1p2+dfsg' dh_auto_install install -m0755 -d /build/cmtk-3.3.1p2\+dfsg/debian/cmtk cd obj-x86_64-linux-gnu && make -j16 install DESTDIR=/build/cmtk-3.3.1p2\+dfsg/debian/cmtk AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/cmtk-3.3.1p2+dfsg -B/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/share/cmtk/doc/COPYING.txt -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/share/cmtk/doc/README.txt -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/share/cmtk/doc//Licenses -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/share/cmtk/doc//Licenses/LICENSE.zlib -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/share/cmtk/doc//Licenses/LICENSE.alglib -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/share/cmtk/doc//Licenses/LICENSE.vtk -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/share/cmtk/doc//Licenses/LICENSE.mxml -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/share/cmtk/doc//Licenses/LICENSE.NrrdIO -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/share/cmtk/doc//Licenses/LICENSE.numdiff -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/share/cmtk/doc//Licenses/LICENSE.dcmtk -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/share/cmtk/doc//Licenses/LICENSE.sqlite3 -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/share/cmtk/doc//Licenses/LICENSE.cmtk -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/UseCMTK.cmake -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/CMTKConfig.cmake -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/cmtkconfig.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/CMTKLibraryDepends.cmake -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/libNrrdIO.so -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/NrrdIO.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/cmtk_NrrdIO_mangle.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/privateAir.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/privateBiff.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/privateNrrd.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/teem32bit.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/teemDio.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/teemEndian.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/teemPng.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/teemQnanhibit.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/libcmtkMxml.so -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/cmtk_mxml_mangle.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/mxml-private.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/mxml.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/config.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/avg_adm -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/avg_adm" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/describe -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/describe" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/groupwise_init -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/groupwise_init" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/groupwise_affine -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/groupwise_affine" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/groupwise_warp -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/groupwise_warp" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/asegment -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/asegment" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/average_affine -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/average_affine" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/average_images -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/average_images" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/average_labels -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/average_labels" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/concat_affine -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/concat_affine" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/convertx -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/convertx" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/convert_warp -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/convert_warp" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/destripe -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/destripe" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/dof2mat -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/dof2mat" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/dwi_mask_bad_slices -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/dwi_mask_bad_slices" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/epiunwarp -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/epiunwarp" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/fibxform -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/fibxform" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/fib2image -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/fib2image" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/film -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/film" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/filter -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/filter" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/fit_affine_dfield -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/fit_affine_dfield" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/fit_affine_xform -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/fit_affine_xform" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/fit_affine_xform_landmarks -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/fit_affine_xform_landmarks" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/fit_spline_dfield -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/fit_spline_dfield" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/fit_spline_xform -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/fit_spline_xform" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/geomatch -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/geomatch" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/glm -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/glm" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/gmm -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/gmm" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/gregxform -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/gregxform" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/hausdorff -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/hausdorff" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/histogram -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/histogram" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/imagemath -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/imagemath" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/interleaved_bad_slices -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/interleaved_bad_slices" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/jidb -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/jidb" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/levelset -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/levelset" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/lsba -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/lsba" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/lmsba -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/lmsba" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/lvote -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/lvote" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/make_initial_affine -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/make_initial_affine" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/mat2dof -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/mat2dof" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/mk_adni_phantom -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/mk_adni_phantom" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/mk_analyze_hdr -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/mk_analyze_hdr" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/mk_nifti_hdr -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/mk_nifti_hdr" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/mk_phantom_3d -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/mk_phantom_3d" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/mrbias -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/mrbias" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/overlap -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/overlap" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/probe -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/probe" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/pxsearch -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/pxsearch" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/reformatx -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/reformatx" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/registration -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/registration" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/registrationx -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/registrationx" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/regress -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/regress" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/reorient -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/reorient" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/sba -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/sba" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/sbai -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/sbai" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/sequence -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/sequence" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/similarity -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/similarity" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/split -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/split" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/statistics -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/statistics" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/stream_pixels -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/stream_pixels" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/streamxform -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/streamxform" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/sympl -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/sympl" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/symplx -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/symplx" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/ttest -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/ttest" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/unsplit -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/unsplit" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/unwarp_image_phantom -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/unwarp_image_phantom" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/vol2csv -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/vol2csv" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/volume_injection -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/volume_injection" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/volume_reconstruction -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/volume_reconstruction" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/vtkxform -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/vtkxform" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/warp -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/warp" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/warpx -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/warpx" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/warp2ps -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/warp2ps" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/xform2dfield -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/xform2dfield" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/xform2itk -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/xform2itk" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/xform2scalar -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/xform2scalar" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/dbtool -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/dbtool" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/asegment_sri24 -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/asegment_sri24" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/mcaffine -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/mcaffine" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/mcwarp -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/mcwarp" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/dcm2image -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/dcm2image" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/detect_spheres_matched_filter -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/detect_spheres_matched_filter" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/detect_adni_phantom -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/detect_adni_phantom" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/libcmtkSystem.so -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/libcmtkSystem.so" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/System/cmtkCannotBeCopied.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/System/cmtkCommandLine.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/System/cmtkCommandLineTypeTraits.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/System/cmtkCompressedStream.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/System/cmtkConsole.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/System/cmtkCoverity.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/System/cmtkDebugOutput.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/System/cmtkException.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/System/cmtkExitException.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/System/cmtkFFTW.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/System/cmtkFileUtils.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/System/cmtkLockingPtr.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/System/cmtkMemory.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/System/cmtkMountPoints.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/System/cmtkMutexLock.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/System/cmtkProgress.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/System/cmtkProgressConsole.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/System/cmtkRegressionTracker.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/System/cmtkSafeCounter.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/System/cmtkSafeCounterGCD.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/System/cmtkSafeCounterMutex.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/System/cmtkSmartConstPtr.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/System/cmtkSmartPtr.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/System/cmtkStackBacktrace.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/System/cmtkStrUtility.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/System/cmtkTestFunctionMap.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/System/cmtkThreadParameterArray.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/System/cmtkThreadParameters.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/System/cmtkThreadPool.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/System/cmtkThreadPoolGCD.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/System/cmtkThreadPoolThreads.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/System/cmtkThreadSemaphore.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/System/cmtkThreadSystemTypes.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/System/cmtkThreads.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/System/cmtkTimers.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/System/doxygen.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/System/cmtkCommandLineConvert.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/System/cmtkCommandLineItem.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/System/cmtkCommandLineList.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/System/cmtkCommandLineOption.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/System/cmtkCommandLineVector.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/System/cmtkThreadParameterArray.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/System/cmtkThreadPoolGCD.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/System/cmtkThreadPoolThreads.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/System/cmtkThreadSemaphoreAppleIsRetarded.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/System/cmtkThreadSemaphoreNone.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/System/cmtkThreadSemaphorePOSIX.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/System/cmtkThreadSemaphoreWindows.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/libcmtkNumerics.so -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/libcmtkNumerics.so" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Numerics/ap.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Numerics/apvt.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Numerics/bdsvd.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Numerics/bidiagonal.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Numerics/blas.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Numerics/cholesky.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Numerics/det.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Numerics/gammaf.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Numerics/hessenberg.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Numerics/hsschur.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Numerics/ibetaf.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Numerics/igammaf.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Numerics/lbfgsb.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Numerics/lq.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Numerics/lu.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Numerics/normaldistr.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Numerics/nsevd.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Numerics/qr.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Numerics/randomc.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Numerics/reflections.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Numerics/rotations.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Numerics/sblas.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Numerics/sevd.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Numerics/spddet.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Numerics/studenttdistr.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Numerics/studentttests.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Numerics/svd.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Numerics/tdevd.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Numerics/tridiagonal.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/libcmtkBase.so -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/libcmtkBase.so" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkActiveDeformationModel.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkActiveShapeModel.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkAffineXform.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkAffineXformUniformVolume.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkAnatomicalOrientation.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkAnatomicalOrientationBase.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkBitVector.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkCompatibilityMatrix4x4.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkCubicInterpolator.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkCubicSpline.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkDataGrid.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkDataGridFilter.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkDataGridLocalCorrelation.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkDataGridMorphologicalOperators.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkDataTypeTraits.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkDeformationField.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkDetectedPhantomMagphanEMR051.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkDirectionSet.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkDistanceMap.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkEigenSystemSymmetricMatrix.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkEigenSystemSymmetricMatrix3x3.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkEigenValuesSymmetricMatrix.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkFilterMask.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkFilterVolume.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkFitAffineToLandmarks.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkFitAffineToWarpXform.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkFitAffineToXformList.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkFitPolynomialToLandmarks.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkFitRigidToLandmarks.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkFitSplineWarpToDeformationField.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkFitSplineWarpToLandmarks.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkFitSplineWarpToXformList.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkFitToXformListBase.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkFixedArray.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkFixedSquareMatrix.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkFixedVector.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkFunctional.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkGaussianKernel.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkGeneralLinearModel.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkHashMapSTL.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkHistogram.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkHistogramBase.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkHistogramOtsuThreshold.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkHistogramThresholdByVolume.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkHypothesisTests.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkImageOperation.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkImageOperationBoundaryMap.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkImageOperationConnectedComponents.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkImageOperationConvertType.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkImageOperationCropRegion.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkImageOperationCropThreshold.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkImageOperationDistanceMap.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkImageOperationDownsample.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkImageOperationErodeDilate.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkImageOperationErodeDilateDistance.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkImageOperationFlip.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkImageOperationGaussFilter.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkImageOperationHistogramEqualization.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkImageOperationLaplaceFilter.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkImageOperationMapValues.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkImageOperationOtsuThreshold.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkImageOperationPruneHistogram.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkImageOperationRegionFilter.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkImageOperationReplace.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkImageOperationResampleIsotropic.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkImageOperationRevert.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkImageOperationScaleToRange.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkImageOperationSetDataClass.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkImageOperationSetPadding.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkImageOperationThreshold.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkImageTemplate.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkInterpolator.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkJointHistogram.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkJointHistogramBase.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkLandmark.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkLandmarkList.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkLandmarkPair.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkLandmarkPairList.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkLeastSquares.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkLinearInterpolator.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkLogHistogram.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkMacros.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkMagphanEMR051.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkMathFunctionWrappers.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkMathUtil.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkMatrix.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkMatrix3x3.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkMatrix4x4.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkMetaInformationObject.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkNearestNeighborInterpolator.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkParametricPlane.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkPolynomial.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkPolynomialXform.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkProbeInfo.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkQRDecomposition.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkRegion.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkRegionIndexIterator.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkRegionSphereIterator.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkScalarImage.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkScalarImageGradientField.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkSegmentationLabel.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkSincInterpolator.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkSplineWarpXform.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkSplineWarpXformUniformVolume.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkSurfaceNormal.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkSymmetricMatrix.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkTemplateArray.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkTransformChangeFromSpaceAffine.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkTransformChangeToSpaceAffine.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkTransformedVolumeAxes.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkTypedArray.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkTypedArrayFunction.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkTypedArrayFunctionHistogramEqualization.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkTypedArrayFunctionHistogramMatching.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkTypedArrayNoiseEstimatorNaiveGaussian.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkTypes.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkUniformDistanceMap.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkUniformVolume.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkUniformVolumeGaussianFilter.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkUniformVolumeHoughTransformSphere.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkUniformVolumeInterpolator.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkUniformVolumeInterpolatorBase.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkUniformVolumeInterpolatorPartialVolume.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkUniformVolumeLaplaceFilter.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkUniformVolumeMorphologicalOperators.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkUniformVolumePainter.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkUnionFind.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkUnits.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkValueSequence.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkVector.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkVector3D.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkVolume.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkVolumeClipping.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkVolumeGridToGridLookup.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkWarpXform.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkXform.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkXformList.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkXformListEntry.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkXformUniformVolume.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/doxygen.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkDataGrid.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkDataGridFilter.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkEigenSystemSymmetricMatrix.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkEigenSystemSymmetricMatrix3x3.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkEigenValuesSymmetricMatrix.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkFixedSquareMatrix.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkHistogram.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkHistogramOtsuThreshold.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkHistogramThresholdByVolume.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkMathUtil_Statistics.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkQRDecomposition.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkRegion.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkTemplateArray.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkTemplateArray_Statistics.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkUniformVolume.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkUniformVolumeInterpolator.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkValueSequence.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkVector.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Base/cmtkVolume.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/libcmtkIO.so -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/libcmtkIO.so" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/IO/cmtkAffineXformITKIO.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/IO/cmtkAnalyze.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/IO/cmtkClassStreamAffineXform.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/IO/cmtkClassStreamInput.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/IO/cmtkClassStreamMultiChannelRegistration.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/IO/cmtkClassStreamOutput.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/IO/cmtkClassStreamPolynomialXform.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/IO/cmtkClassStreamStudyList.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/IO/cmtkDICOM.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/IO/cmtkFileConstHeader.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/IO/cmtkFileFormat.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/IO/cmtkFileHeader.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/IO/cmtkGroupwiseRegistrationFunctionalIO.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/IO/cmtkImageFileDICOM.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/IO/cmtkImageOperationApplyMask.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/IO/cmtkImageOperationMatchIntensities.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/IO/cmtkImageStackDICOM.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/IO/cmtkLandmarkIO.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/IO/cmtkLandmarkListIO.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/IO/cmtkPhantomIO.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/IO/cmtkSQLite.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/IO/cmtkSegmentationLabelIO.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/IO/cmtkSiemensCSAHeader.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/IO/cmtkSplineWarpXformITKIO.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/IO/cmtkStudy.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/IO/cmtkStudyImageSet.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/IO/cmtkStudyList.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/IO/cmtkTypedStream.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/IO/cmtkTypedStreamInput.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/IO/cmtkTypedStreamOutput.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/IO/cmtkTypedStreamStudylist.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/IO/cmtkVolumeFromFile.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/IO/cmtkVolumeFromSlices.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/IO/cmtkVolumeFromStudy.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/IO/cmtkVolumeIO.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/IO/cmtkXformIO.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/IO/cmtkXformListIO.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/IO/doxygen.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/IO/nifti1.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/IO/nifti1_io_math.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/IO/cmtkClassStreamMultiChannelRegistration.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/libcmtkRegistration.so -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/libcmtkRegistration.so" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkAffineCongealingFunctional.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkAffineGroupwiseRegistrationRMIFunctional.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkAffineMultiChannelRegistrationFunctional.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkAffineRegistration.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkAffineRegistrationCommandLine.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkBestDirectionOptimizer.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkBestNeighbourOptimizer.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkCongealingFunctional.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkEchoPlanarUnwarpFunctional.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkElasticRegistration.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkElasticRegistrationCommandLine.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkGroupwiseRegistrationFunctionalAffineInitializer.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkGroupwiseRegistrationFunctionalBase.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkGroupwiseRegistrationFunctionalXformTemplate.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkGroupwiseRegistrationFunctionalXformTemplateBase.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkGroupwiseRegistrationFunctionalXformTemplate_Affine.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkGroupwiseRegistrationFunctionalXformTemplate_SplineWarp.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkGroupwiseRegistrationOutput.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkGroupwiseRegistrationRMIFunctional.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkHausdorffDistance.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkImagePairAffineRegistration.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkImagePairAffineRegistrationCommandLine.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkImagePairAffineRegistrationFunctional.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkImagePairAffineRegistrationFunctionalTemplate.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkImagePairNonrigidRegistration.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkImagePairNonrigidRegistrationCommandLine.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkImagePairNonrigidRegistrationFunctional.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkImagePairNonrigidRegistrationFunctionalTemplate.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkImagePairRegistration.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkImagePairRegistrationFunctional.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkImagePairSimilarityJointHistogram.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkImagePairSimilarityMeasure.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkImagePairSimilarityMeasureCR.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkImagePairSimilarityMeasureMI.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkImagePairSimilarityMeasureMSD.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkImagePairSimilarityMeasureNCC.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkImagePairSimilarityMeasureNMI.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkImagePairSimilarityMeasureRMS.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkImagePairSymmetricAffineRegistrationFunctional.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkImagePairSymmetricAffineRegistrationFunctionalTemplate.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkImagePairSymmetricNonrigidRegistrationFunctional.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkImagePairSymmetricNonrigidRegistrationFunctionalTemplate.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkImageSymmetryPlaneCommandLine.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkImageSymmetryPlaneCommandLineBase.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkImageSymmetryPlaneFunctional.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkImageSymmetryPlaneFunctionalBase.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkImageXformDB.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkMakeInitialAffineTransformation.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkMultiChannelHistogramRegistrationFunctional.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkMultiChannelRMIRegistrationFunctional.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkMultiChannelRegistrationFunctional.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkMultiChannelRegistrationFunctionalBase.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkOptimizer.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkOptimizerBase.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkProtocolCallback.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkReformatVolume.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkRegistrationCallback.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkRegistrationJointHistogram.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkScaleHistogramValueTrait.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkSearchTrace.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkSplineWarpCongealingFunctional.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkSplineWarpGroupwiseRegistrationRMIFunctional.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkSplineWarpMultiChannelIntensityCorrectionRegistrationFunctional.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkSplineWarpMultiChannelRegistrationFunctional.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkSymmetricElasticFunctional.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkSymmetryPlaneFunctional.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkTemplateMultiChannelRegistrationFunctional.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkTypedArraySimilarity.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkTypedArraySimilarityMemory.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkVoxelMatchingAffineFunctional.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkVoxelMatchingAffineFunctionalTemplate.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkVoxelMatchingCorrRatio.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkVoxelMatchingCrossCorrelation.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkVoxelMatchingElasticFunctional.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkVoxelMatchingFunctional.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkVoxelMatchingMeanSquaredDifference.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkVoxelMatchingMetric.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkVoxelMatchingMetric_Type.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkVoxelMatchingMutInf.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkVoxelMatchingNormMutInf.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkVoxelRegistration.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/doxygen.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkAffineMultiChannelRegistrationFunctional.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkImagePairAffineRegistrationFunctionalTemplate.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkImagePairNonrigidRegistrationFunctionalTemplate.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkMultiChannelHistogramRegistrationFunctional.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkMultiChannelHistogramRegistrationFunctionalMetricData.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkMultiChannelRMIRegistrationFunctional.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkMultiChannelRMIRegistrationFunctionalMetricData.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkMultiChannelRegistrationFunctional.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkReformatVolume.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkReformatVolumeJacobian.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkReformatVolumePlain.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkReformatVolumeReformat.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkSplineWarpCongealingFunctional.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkSplineWarpGroupwiseRegistrationRMIFunctional.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkSplineWarpMultiChannelIntensityCorrectionRegistrationFunctional.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkSplineWarpMultiChannelRegistrationFunctional.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkSplineWarpMultiChannelRegistrationFunctionalThreadFunctions.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Registration/cmtkVoxelMatchingMetric.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/libcmtkSegmentation.so -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/libcmtkSegmentation.so" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Segmentation/cmtkAtlasSegmentation.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Segmentation/cmtkDetectPhantomMagphanEMR051.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Segmentation/cmtkEntropyMinimizationIntensityCorrectionFunctional.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Segmentation/cmtkEntropyMinimizationIntensityCorrectionFunctionalBase.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Segmentation/cmtkLabelCombinationLocalBinaryShapeBasedAveraging.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Segmentation/cmtkLabelCombinationLocalShapeBasedAveraging.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Segmentation/cmtkLabelCombinationLocalVoting.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Segmentation/cmtkLabelCombinationLocalWeighting.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Segmentation/cmtkLabelCombinationMultiClassSTAPLE.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Segmentation/cmtkLabelCombinationSTAPLE.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Segmentation/cmtkLabelCombinationShapeBasedAveraging.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Segmentation/cmtkLabelCombinationShapeBasedAveragingInterpolation.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Segmentation/cmtkLabelCombinationVoting.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Segmentation/cmtkLeastSquaresPolynomialIntensityBiasField.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Segmentation/cmtkMultiChannelEntropyMinimizationIntensityCorrectionFunctional.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Segmentation/cmtkOverlapMeasures.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Segmentation/cmtkSimpleLevelset.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Segmentation/cmtkSimpleLevelsetCommandLine.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Segmentation/cmtkSimpleLevelsetCommandLineBase.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Segmentation/cmtkSphereDetectionBipolarMatchedFilterFFT.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Segmentation/cmtkSphereDetectionNormalizedBipolarMatchedFilterFFT.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Segmentation/doxygen.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Segmentation/cmtkEntropyMinimizationIntensityCorrectionFunctional.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/libcmtkRecon.so -- Set runtime path of "/build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/libcmtkRecon.so" to "/usr/lib/cmtk" -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Recon/cmtkDeblurringVolumeReconstruction.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Recon/cmtkInverseInterpolationVolumeReconstruction.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Recon/cmtkInverseInterpolationVolumeReconstructionBase.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Recon/cmtkPointSpreadFunctionBox.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Recon/cmtkPointSpreadFunctionGaussian.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Recon/cmtkVolumeInjectionReconstruction.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Recon/doxygen.h -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Recon/cmtkDeblurringVolumeReconstruction.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include/cmtk/Recon/cmtkInverseInterpolationVolumeReconstruction.txx -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/cmtk_functions.sh -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/cmtk_locking.sh -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/cmtk_locking_procmail.sh -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/iterative_shape_averaging -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/correct_nex_motion -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/groupwise_reformat -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/correct_dwi_distortion -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/correct_dwi_distortion_and_motion -- Installing: /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/bin/cmtk make[2]: Leaving directory '/build/cmtk-3.3.1p2+dfsg/obj-x86_64-linux-gnu' : # Remove not needed headers, cmake files etc rm -fr /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/include /usr/bin/find /build/cmtk-3.3.1p2+dfsg/debian/cmtk -iname *.cmake -delete /usr/bin/find: paths must precede expression: `cmtkConfigureCPack.cmake' /usr/bin/find: possible unquoted pattern after predicate `-iname'? make[1]: [debian/rules:72: override_dh_auto_install] Error 1 (ignored) : # Prune duplicate docs rm -fr /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/share/cmtk/doc : # Generate manpages xvfb-run --auto-servernum --server-num=20 \ scripts/gen_manpages \ || dpkg -l xvfb | awk '/xvfb/{print ;}' | grep -q ubuntu /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/cmtk_functions.sh: 37: .: cannot open /usr/lib/cmtk/bin/cmtk_locking.sh: No such file Manpage for /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/cmtk_functions.sh -- FAILED /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/correct_dwi_distortion: 34: .: cannot open /usr/lib/cmtk/bin/cmtk_functions.sh: No such file Manpage for /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/correct_dwi_distortion -- FAILED /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/correct_dwi_distortion_and_motion: 34: .: cannot open /usr/lib/cmtk/bin/cmtk_functions.sh: No such file Manpage for /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/correct_dwi_distortion_and_motion -- FAILED /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/correct_nex_motion: 36: .: cannot open /usr/lib/cmtk/bin/cmtk_functions.sh: No such file Manpage for /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/correct_nex_motion -- FAILED /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/groupwise_reformat: 36: .: cannot open /usr/lib/cmtk/bin/cmtk_functions.sh: No such file Manpage for /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/groupwise_reformat -- FAILED /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/iterative_shape_averaging: line 34: /usr/lib/cmtk/bin/cmtk_functions.sh: No such file or directory Manpage for /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/lib/cmtk/bin/iterative_shape_averaging -- FAILED : # Above condition just to ignore unclean exit from xvfb on elderly broken ubuntus : # Cleaner solution patches are welcome! make[1]: Leaving directory '/build/cmtk-3.3.1p2+dfsg' dh_install install -m0755 -d debian/cmtk/etc/cmtk cp --reflink=auto -a ./debian/cmtk.sh debian/cmtk/etc/cmtk/ dh_installdocs install -m0755 -d debian/cmtk/usr/share/doc/cmtk install -m0755 -d debian/cmtk/usr/share/doc/cmtk cp --reflink=auto -a ./README.txt debian/cmtk/usr/share/doc/cmtk cd './debian/upstream/..' && find 'upstream' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /build/cmtk-3.3.1p2+dfsg/debian/cmtk/usr/share/doc/cmtk chmod -R u\+rw,go=rX debian/cmtk/usr/share/doc install -p -m0644 debian/README.Debian debian/cmtk/usr/share/doc/cmtk/README.Debian install -p -m0644 debian/TODO debian/cmtk/usr/share/doc/cmtk/TODO.Debian install -p -m0644 debian/copyright debian/cmtk/usr/share/doc/cmtk/copyright dh_installchangelogs install -m0755 -d debian/cmtk/usr/share/doc/cmtk install -p -m0644 debian/.debhelper/generated/cmtk/dh_installchangelogs.dch.trimmed debian/cmtk/usr/share/doc/cmtk/changelog.Debian install -p -m0644 ./CHANGELOG debian/cmtk/usr/share/doc/cmtk/changelog rm -f debian/cmtk.debhelper.log debian/rules override_dh_installman make[1]: Entering directory '/build/cmtk-3.3.1p2+dfsg' dh_installman debian/manpages/* install -m0755 -d debian/cmtk/usr/share/man/man1/ install -p -m0644 debian/manpages/cmtk-asegment.1 debian/cmtk/usr/share/man/man1/cmtk-asegment.1 install -m0755 -d debian/cmtk/usr/share/man/man1/ install -p -m0644 debian/manpages/cmtk-asegment_sri24.1 debian/cmtk/usr/share/man/man1/cmtk-asegment_sri24.1 install -m0755 -d debian/cmtk/usr/share/man/man1/ install -p -m0644 debian/manpages/cmtk-average_affine.1 debian/cmtk/usr/share/man/man1/cmtk-average_affine.1 install -m0755 -d debian/cmtk/usr/share/man/man1/ install -p -m0644 debian/manpages/cmtk-average_images.1 debian/cmtk/usr/share/man/man1/cmtk-average_images.1 install -m0755 -d debian/cmtk/usr/share/man/man1/ install -p -m0644 debian/manpages/cmtk-average_labels.1 debian/cmtk/usr/share/man/man1/cmtk-average_labels.1 install -m0755 -d debian/cmtk/usr/share/man/man1/ install -p -m0644 debian/manpages/cmtk-avg_adm.1 debian/cmtk/usr/share/man/man1/cmtk-avg_adm.1 install -m0755 -d debian/cmtk/usr/share/man/man1/ install -p -m0644 debian/manpages/cmtk-concat_affine.1 debian/cmtk/usr/share/man/man1/cmtk-concat_affine.1 install -m0755 -d debian/cmtk/usr/share/man/man1/ install -p -m0644 debian/manpages/cmtk-convert_warp.1 debian/cmtk/usr/share/man/man1/cmtk-convert_warp.1 install -m0755 -d debian/cmtk/usr/share/man/man1/ install -p -m0644 debian/manpages/cmtk-convertx.1 debian/cmtk/usr/share/man/man1/cmtk-convertx.1 install -m0755 -d debian/cmtk/usr/share/man/man1/ install -p -m0644 debian/manpages/cmtk-dbtool.1 debian/cmtk/usr/share/man/man1/cmtk-dbtool.1 install -m0755 -d debian/cmtk/usr/share/man/man1/ install -p -m0644 debian/manpages/cmtk-dcm2image.1 debian/cmtk/usr/share/man/man1/cmtk-dcm2image.1 install -m0755 -d debian/cmtk/usr/share/man/man1/ install -p -m0644 debian/manpages/cmtk-describe.1 debian/cmtk/usr/share/man/man1/cmtk-describe.1 install -m0755 -d debian/cmtk/usr/share/man/man1/ install -p -m0644 debian/manpages/cmtk-destripe.1 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debian/cmtk/usr/share/man/man1/cmtk-statistics.1 debian/cmtk/usr/share/man/man1/cmtk-stream_pixels.1 debian/cmtk/usr/share/man/man1/cmtk-streamxform.1 debian/cmtk/usr/share/man/man1/cmtk-sympl.1 debian/cmtk/usr/share/man/man1/cmtk-symplx.1 debian/cmtk/usr/share/man/man1/cmtk-ttest.1 man-recode --to-code UTF-8 --suffix .dh-new debian/cmtk/usr/share/man/man1/cmtk-unsplit.1 debian/cmtk/usr/share/man/man1/cmtk-unwarp_image_phantom.1 debian/cmtk/usr/share/man/man1/cmtk-vol2csv.1 debian/cmtk/usr/share/man/man1/cmtk-volume_injection.1 debian/cmtk/usr/share/man/man1/cmtk-volume_reconstruction.1 debian/cmtk/usr/share/man/man1/cmtk-vtkxform.1 man-recode --to-code UTF-8 --suffix .dh-new debian/cmtk/usr/share/man/man1/cmtk.1 man-recode --to-code UTF-8 --suffix .dh-new debian/cmtk/usr/share/man/man1/cmtk-warp.1 debian/cmtk/usr/share/man/man1/cmtk-warp2ps.1 debian/cmtk/usr/share/man/man1/cmtk-warpx.1 debian/cmtk/usr/share/man/man1/cmtk-xform2dfield.1 debian/cmtk/usr/share/man/man1/cmtk-xform2itk.1 debian/cmtk/usr/share/man/man1/cmtk-xform2scalar.1 mv debian/cmtk/usr/share/man/man1/cmtk.1.dh-new debian/cmtk/usr/share/man/man1/cmtk.1 chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk.1 mv debian/cmtk/usr/share/man/man1/cmtk-probe.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-probe.1 mv debian/cmtk/usr/share/man/man1/cmtk-pxsearch.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-pxsearch.1 mv debian/cmtk/usr/share/man/man1/cmtk-reformatx.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-reformatx.1 mv debian/cmtk/usr/share/man/man1/cmtk-registration.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-registration.1 mv debian/cmtk/usr/share/man/man1/cmtk-registrationx.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-registrationx.1 mv debian/cmtk/usr/share/man/man1/cmtk-regress.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-regress.1 chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-probe.1 debian/cmtk/usr/share/man/man1/cmtk-pxsearch.1 debian/cmtk/usr/share/man/man1/cmtk-reformatx.1 debian/cmtk/usr/share/man/man1/cmtk-registration.1 debian/cmtk/usr/share/man/man1/cmtk-registrationx.1 debian/cmtk/usr/share/man/man1/cmtk-regress.1 mv debian/cmtk/usr/share/man/man1/cmtk-gregxform.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-gregxform.1 mv debian/cmtk/usr/share/man/man1/cmtk-groupwise_affine.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-groupwise_affine.1 mv debian/cmtk/usr/share/man/man1/cmtk-groupwise_init.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-groupwise_init.1 mv debian/cmtk/usr/share/man/man1/cmtk-groupwise_warp.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-groupwise_warp.1 mv debian/cmtk/usr/share/man/man1/cmtk-hausdorff.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-hausdorff.1 mv debian/cmtk/usr/share/man/man1/cmtk-histogram.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-histogram.1 chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-gregxform.1 debian/cmtk/usr/share/man/man1/cmtk-groupwise_affine.1 debian/cmtk/usr/share/man/man1/cmtk-groupwise_init.1 debian/cmtk/usr/share/man/man1/cmtk-groupwise_warp.1 debian/cmtk/usr/share/man/man1/cmtk-hausdorff.1 debian/cmtk/usr/share/man/man1/cmtk-histogram.1 mv debian/cmtk/usr/share/man/man1/cmtk-asegment.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-asegment.1 mv debian/cmtk/usr/share/man/man1/cmtk-asegment_sri24.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-asegment_sri24.1 mv debian/cmtk/usr/share/man/man1/cmtk-average_affine.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-average_affine.1 mv debian/cmtk/usr/share/man/man1/cmtk-average_images.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-average_images.1 mv debian/cmtk/usr/share/man/man1/cmtk-average_labels.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-average_labels.1 mv debian/cmtk/usr/share/man/man1/cmtk-avg_adm.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-avg_adm.1 chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-asegment.1 debian/cmtk/usr/share/man/man1/cmtk-asegment_sri24.1 debian/cmtk/usr/share/man/man1/cmtk-average_affine.1 debian/cmtk/usr/share/man/man1/cmtk-average_images.1 debian/cmtk/usr/share/man/man1/cmtk-average_labels.1 debian/cmtk/usr/share/man/man1/cmtk-avg_adm.1 mv debian/cmtk/usr/share/man/man1/cmtk-fib2image.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-fib2image.1 mv debian/cmtk/usr/share/man/man1/cmtk-fibxform.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-fibxform.1 mv debian/cmtk/usr/share/man/man1/cmtk-film.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-film.1 mv debian/cmtk/usr/share/man/man1/cmtk-filter.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-filter.1 mv debian/cmtk/usr/share/man/man1/cmtk-fit_affine_dfield.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-fit_affine_dfield.1 mv debian/cmtk/usr/share/man/man1/cmtk-fit_affine_xform.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-fit_affine_xform.1 chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-fib2image.1 debian/cmtk/usr/share/man/man1/cmtk-fibxform.1 debian/cmtk/usr/share/man/man1/cmtk-film.1 debian/cmtk/usr/share/man/man1/cmtk-filter.1 debian/cmtk/usr/share/man/man1/cmtk-fit_affine_dfield.1 debian/cmtk/usr/share/man/man1/cmtk-fit_affine_xform.1 mv debian/cmtk/usr/share/man/man1/cmtk-destripe.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-destripe.1 mv debian/cmtk/usr/share/man/man1/cmtk-detect_adni_phantom.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-detect_adni_phantom.1 mv debian/cmtk/usr/share/man/man1/cmtk-detect_spheres_matched_filter.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-detect_spheres_matched_filter.1 mv debian/cmtk/usr/share/man/man1/cmtk-dof2mat.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-dof2mat.1 mv debian/cmtk/usr/share/man/man1/cmtk-dwi_mask_bad_slices.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-dwi_mask_bad_slices.1 mv debian/cmtk/usr/share/man/man1/cmtk-epiunwarp.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-epiunwarp.1 chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-destripe.1 debian/cmtk/usr/share/man/man1/cmtk-detect_adni_phantom.1 debian/cmtk/usr/share/man/man1/cmtk-detect_spheres_matched_filter.1 debian/cmtk/usr/share/man/man1/cmtk-dof2mat.1 debian/cmtk/usr/share/man/man1/cmtk-dwi_mask_bad_slices.1 debian/cmtk/usr/share/man/man1/cmtk-epiunwarp.1 mv debian/cmtk/usr/share/man/man1/cmtk-imagemath.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-imagemath.1 mv debian/cmtk/usr/share/man/man1/cmtk-interleaved_bad_slices.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-interleaved_bad_slices.1 mv debian/cmtk/usr/share/man/man1/cmtk-iterative_shape_averaging.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-iterative_shape_averaging.1 mv debian/cmtk/usr/share/man/man1/cmtk-jidb.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-jidb.1 mv debian/cmtk/usr/share/man/man1/cmtk-levelset.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-levelset.1 mv debian/cmtk/usr/share/man/man1/cmtk-lmsba.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-lmsba.1 chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-imagemath.1 debian/cmtk/usr/share/man/man1/cmtk-interleaved_bad_slices.1 debian/cmtk/usr/share/man/man1/cmtk-iterative_shape_averaging.1 debian/cmtk/usr/share/man/man1/cmtk-jidb.1 debian/cmtk/usr/share/man/man1/cmtk-levelset.1 debian/cmtk/usr/share/man/man1/cmtk-lmsba.1 mv debian/cmtk/usr/share/man/man1/cmtk-unsplit.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-unsplit.1 mv debian/cmtk/usr/share/man/man1/cmtk-unwarp_image_phantom.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-unwarp_image_phantom.1 mv debian/cmtk/usr/share/man/man1/cmtk-vol2csv.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-vol2csv.1 mv debian/cmtk/usr/share/man/man1/cmtk-volume_injection.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-volume_injection.1 mv debian/cmtk/usr/share/man/man1/cmtk-volume_reconstruction.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-volume_reconstruction.1 mv debian/cmtk/usr/share/man/man1/cmtk-vtkxform.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-vtkxform.1 chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-unsplit.1 debian/cmtk/usr/share/man/man1/cmtk-unwarp_image_phantom.1 debian/cmtk/usr/share/man/man1/cmtk-vol2csv.1 debian/cmtk/usr/share/man/man1/cmtk-volume_injection.1 debian/cmtk/usr/share/man/man1/cmtk-volume_reconstruction.1 debian/cmtk/usr/share/man/man1/cmtk-vtkxform.1 mv debian/cmtk/usr/share/man/man1/cmtk-reorient.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-reorient.1 mv debian/cmtk/usr/share/man/man1/cmtk-sba.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-sba.1 mv debian/cmtk/usr/share/man/man1/cmtk-sbai.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-sbai.1 mv debian/cmtk/usr/share/man/man1/cmtk-sequence.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-sequence.1 mv debian/cmtk/usr/share/man/man1/cmtk-similarity.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-similarity.1 mv debian/cmtk/usr/share/man/man1/cmtk-split.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-split.1 chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-reorient.1 debian/cmtk/usr/share/man/man1/cmtk-sba.1 debian/cmtk/usr/share/man/man1/cmtk-sbai.1 debian/cmtk/usr/share/man/man1/cmtk-sequence.1 debian/cmtk/usr/share/man/man1/cmtk-similarity.1 debian/cmtk/usr/share/man/man1/cmtk-split.1 mv debian/cmtk/usr/share/man/man1/cmtk-concat_affine.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-concat_affine.1 mv debian/cmtk/usr/share/man/man1/cmtk-convert_warp.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-convert_warp.1 mv debian/cmtk/usr/share/man/man1/cmtk-convertx.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-convertx.1 mv debian/cmtk/usr/share/man/man1/cmtk-dbtool.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-dbtool.1 mv debian/cmtk/usr/share/man/man1/cmtk-dcm2image.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-dcm2image.1 mv debian/cmtk/usr/share/man/man1/cmtk-describe.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-describe.1 chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-concat_affine.1 debian/cmtk/usr/share/man/man1/cmtk-convert_warp.1 debian/cmtk/usr/share/man/man1/cmtk-convertx.1 debian/cmtk/usr/share/man/man1/cmtk-dbtool.1 debian/cmtk/usr/share/man/man1/cmtk-dcm2image.1 debian/cmtk/usr/share/man/man1/cmtk-describe.1 mv debian/cmtk/usr/share/man/man1/cmtk-fit_affine_xform_landmarks.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-fit_affine_xform_landmarks.1 mv debian/cmtk/usr/share/man/man1/cmtk-fit_spline_dfield.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-fit_spline_dfield.1 mv debian/cmtk/usr/share/man/man1/cmtk-fit_spline_xform.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-fit_spline_xform.1 mv debian/cmtk/usr/share/man/man1/cmtk-geomatch.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-geomatch.1 mv debian/cmtk/usr/share/man/man1/cmtk-glm.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-glm.1 mv debian/cmtk/usr/share/man/man1/cmtk-gmm.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-gmm.1 chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-fit_affine_xform_landmarks.1 debian/cmtk/usr/share/man/man1/cmtk-fit_spline_dfield.1 debian/cmtk/usr/share/man/man1/cmtk-fit_spline_xform.1 debian/cmtk/usr/share/man/man1/cmtk-geomatch.1 debian/cmtk/usr/share/man/man1/cmtk-glm.1 debian/cmtk/usr/share/man/man1/cmtk-gmm.1 mv debian/cmtk/usr/share/man/man1/cmtk-lsba.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-lsba.1 mv debian/cmtk/usr/share/man/man1/cmtk-lvote.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-lvote.1 mv debian/cmtk/usr/share/man/man1/cmtk-make_initial_affine.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-make_initial_affine.1 mv debian/cmtk/usr/share/man/man1/cmtk-mat2dof.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-mat2dof.1 mv debian/cmtk/usr/share/man/man1/cmtk-mcaffine.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-mcaffine.1 mv debian/cmtk/usr/share/man/man1/cmtk-mcwarp.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-mcwarp.1 chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-lsba.1 debian/cmtk/usr/share/man/man1/cmtk-lvote.1 debian/cmtk/usr/share/man/man1/cmtk-make_initial_affine.1 debian/cmtk/usr/share/man/man1/cmtk-mat2dof.1 debian/cmtk/usr/share/man/man1/cmtk-mcaffine.1 debian/cmtk/usr/share/man/man1/cmtk-mcwarp.1 mv debian/cmtk/usr/share/man/man1/cmtk-statistics.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-statistics.1 mv debian/cmtk/usr/share/man/man1/cmtk-stream_pixels.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-stream_pixels.1 mv debian/cmtk/usr/share/man/man1/cmtk-streamxform.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-streamxform.1 mv debian/cmtk/usr/share/man/man1/cmtk-sympl.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-sympl.1 mv debian/cmtk/usr/share/man/man1/cmtk-symplx.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-symplx.1 mv debian/cmtk/usr/share/man/man1/cmtk-ttest.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-ttest.1 chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-statistics.1 debian/cmtk/usr/share/man/man1/cmtk-stream_pixels.1 debian/cmtk/usr/share/man/man1/cmtk-streamxform.1 debian/cmtk/usr/share/man/man1/cmtk-sympl.1 debian/cmtk/usr/share/man/man1/cmtk-symplx.1 debian/cmtk/usr/share/man/man1/cmtk-ttest.1 mv debian/cmtk/usr/share/man/man1/cmtk-mk_adni_phantom.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-mk_adni_phantom.1 mv debian/cmtk/usr/share/man/man1/cmtk-mk_analyze_hdr.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-mk_analyze_hdr.1 mv debian/cmtk/usr/share/man/man1/cmtk-mk_nifti_hdr.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-mk_nifti_hdr.1 mv debian/cmtk/usr/share/man/man1/cmtk-mk_phantom_3d.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-mk_phantom_3d.1 mv debian/cmtk/usr/share/man/man1/cmtk-mrbias.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-mrbias.1 mv debian/cmtk/usr/share/man/man1/cmtk-overlap.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-overlap.1 chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-mk_adni_phantom.1 debian/cmtk/usr/share/man/man1/cmtk-mk_analyze_hdr.1 debian/cmtk/usr/share/man/man1/cmtk-mk_nifti_hdr.1 debian/cmtk/usr/share/man/man1/cmtk-mk_phantom_3d.1 debian/cmtk/usr/share/man/man1/cmtk-mrbias.1 debian/cmtk/usr/share/man/man1/cmtk-overlap.1 mv debian/cmtk/usr/share/man/man1/cmtk-warp.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-warp.1 mv debian/cmtk/usr/share/man/man1/cmtk-warp2ps.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-warp2ps.1 mv debian/cmtk/usr/share/man/man1/cmtk-warpx.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-warpx.1 mv debian/cmtk/usr/share/man/man1/cmtk-xform2dfield.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-xform2dfield.1 mv debian/cmtk/usr/share/man/man1/cmtk-xform2itk.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-xform2itk.1 mv debian/cmtk/usr/share/man/man1/cmtk-xform2scalar.1.dh-new debian/cmtk/usr/share/man/man1/cmtk-xform2scalar.1 chmod 0644 -- debian/cmtk/usr/share/man/man1/cmtk-warp.1 debian/cmtk/usr/share/man/man1/cmtk-warp2ps.1 debian/cmtk/usr/share/man/man1/cmtk-warpx.1 debian/cmtk/usr/share/man/man1/cmtk-xform2dfield.1 debian/cmtk/usr/share/man/man1/cmtk-xform2itk.1 debian/cmtk/usr/share/man/man1/cmtk-xform2scalar.1 make[1]: Leaving directory '/build/cmtk-3.3.1p2+dfsg' dh_perl dh_link dh_strip_nondeterminism dh_compress cd debian/cmtk chmod a-x usr/share/doc/cmtk/changelog usr/share/doc/cmtk/changelog.Debian usr/share/man/man1/cmtk-asegment.1 usr/share/man/man1/cmtk-asegment_sri24.1 usr/share/man/man1/cmtk-average_affine.1 usr/share/man/man1/cmtk-average_images.1 usr/share/man/man1/cmtk-average_labels.1 usr/share/man/man1/cmtk-avg_adm.1 usr/share/man/man1/cmtk-concat_affine.1 usr/share/man/man1/cmtk-convert_warp.1 usr/share/man/man1/cmtk-convertx.1 usr/share/man/man1/cmtk-dbtool.1 usr/share/man/man1/cmtk-dcm2image.1 usr/share/man/man1/cmtk-describe.1 usr/share/man/man1/cmtk-destripe.1 usr/share/man/man1/cmtk-detect_adni_phantom.1 usr/share/man/man1/cmtk-detect_spheres_matched_filter.1 usr/share/man/man1/cmtk-dof2mat.1 usr/share/man/man1/cmtk-dwi_mask_bad_slices.1 usr/share/man/man1/cmtk-epiunwarp.1 usr/share/man/man1/cmtk-fib2image.1 usr/share/man/man1/cmtk-fibxform.1 usr/share/man/man1/cmtk-film.1 usr/share/man/man1/cmtk-filter.1 usr/share/man/man1/cmtk-fit_affine_dfield.1 usr/share/man/man1/cmtk-fit_affine_xform.1 usr/share/man/man1/cmtk-fit_affine_xform_landmarks.1 usr/share/man/man1/cmtk-fit_spline_dfield.1 usr/share/man/man1/cmtk-fit_spline_xform.1 usr/share/man/man1/cmtk-geomatch.1 usr/share/man/man1/cmtk-glm.1 usr/share/man/man1/cmtk-gmm.1 usr/share/man/man1/cmtk-gregxform.1 usr/share/man/man1/cmtk-groupwise_affine.1 usr/share/man/man1/cmtk-groupwise_init.1 usr/share/man/man1/cmtk-groupwise_warp.1 usr/share/man/man1/cmtk-hausdorff.1 usr/share/man/man1/cmtk-histogram.1 usr/share/man/man1/cmtk-imagemath.1 usr/share/man/man1/cmtk-interleaved_bad_slices.1 usr/share/man/man1/cmtk-iterative_shape_averaging.1 usr/share/man/man1/cmtk-jidb.1 usr/share/man/man1/cmtk-levelset.1 usr/share/man/man1/cmtk-lmsba.1 usr/share/man/man1/cmtk-lsba.1 usr/share/man/man1/cmtk-lvote.1 usr/share/man/man1/cmtk-make_initial_affine.1 usr/share/man/man1/cmtk-mat2dof.1 usr/share/man/man1/cmtk-mcaffine.1 usr/share/man/man1/cmtk-mcwarp.1 usr/share/man/man1/cmtk-mk_adni_phantom.1 usr/share/man/man1/cmtk-mk_analyze_hdr.1 usr/share/man/man1/cmtk-mk_nifti_hdr.1 usr/share/man/man1/cmtk-mk_phantom_3d.1 usr/share/man/man1/cmtk-mrbias.1 usr/share/man/man1/cmtk-overlap.1 usr/share/man/man1/cmtk-probe.1 usr/share/man/man1/cmtk-pxsearch.1 usr/share/man/man1/cmtk-reformatx.1 usr/share/man/man1/cmtk-registration.1 usr/share/man/man1/cmtk-registrationx.1 usr/share/man/man1/cmtk-regress.1 usr/share/man/man1/cmtk-reorient.1 usr/share/man/man1/cmtk-sba.1 usr/share/man/man1/cmtk-sbai.1 usr/share/man/man1/cmtk-sequence.1 usr/share/man/man1/cmtk-similarity.1 usr/share/man/man1/cmtk-split.1 usr/share/man/man1/cmtk-statistics.1 usr/share/man/man1/cmtk-stream_pixels.1 usr/share/man/man1/cmtk-streamxform.1 usr/share/man/man1/cmtk-sympl.1 usr/share/man/man1/cmtk-symplx.1 usr/share/man/man1/cmtk-ttest.1 usr/share/man/man1/cmtk-unsplit.1 usr/share/man/man1/cmtk-unwarp_image_phantom.1 usr/share/man/man1/cmtk-vol2csv.1 usr/share/man/man1/cmtk-volume_injection.1 usr/share/man/man1/cmtk-volume_reconstruction.1 usr/share/man/man1/cmtk-vtkxform.1 usr/share/man/man1/cmtk-warp.1 usr/share/man/man1/cmtk-warp2ps.1 usr/share/man/man1/cmtk-warpx.1 usr/share/man/man1/cmtk-xform2dfield.1 usr/share/man/man1/cmtk-xform2itk.1 usr/share/man/man1/cmtk-xform2scalar.1 usr/share/man/man1/cmtk.1 gzip -9nf usr/share/doc/cmtk/changelog usr/share/doc/cmtk/changelog.Debian usr/share/man/man1/cmtk-asegment.1 usr/share/man/man1/cmtk-asegment_sri24.1 usr/share/man/man1/cmtk-average_affine.1 usr/share/man/man1/cmtk-average_images.1 usr/share/man/man1/cmtk-average_labels.1 usr/share/man/man1/cmtk-avg_adm.1 usr/share/man/man1/cmtk-concat_affine.1 usr/share/man/man1/cmtk-convert_warp.1 usr/share/man/man1/cmtk-convertx.1 usr/share/man/man1/cmtk-dbtool.1 usr/share/man/man1/cmtk-dcm2image.1 usr/share/man/man1/cmtk-describe.1 usr/share/man/man1/cmtk-destripe.1 usr/share/man/man1/cmtk-detect_adni_phantom.1 usr/share/man/man1/cmtk-detect_spheres_matched_filter.1 usr/share/man/man1/cmtk-dof2mat.1 usr/share/man/man1/cmtk-dwi_mask_bad_slices.1 usr/share/man/man1/cmtk-epiunwarp.1 usr/share/man/man1/cmtk-fib2image.1 usr/share/man/man1/cmtk-fibxform.1 usr/share/man/man1/cmtk-film.1 usr/share/man/man1/cmtk-filter.1 usr/share/man/man1/cmtk-fit_affine_dfield.1 usr/share/man/man1/cmtk-fit_affine_xform.1 usr/share/man/man1/cmtk-fit_affine_xform_landmarks.1 usr/share/man/man1/cmtk-fit_spline_dfield.1 usr/share/man/man1/cmtk-fit_spline_xform.1 usr/share/man/man1/cmtk-geomatch.1 usr/share/man/man1/cmtk-glm.1 usr/share/man/man1/cmtk-gmm.1 usr/share/man/man1/cmtk-gregxform.1 usr/share/man/man1/cmtk-groupwise_affine.1 usr/share/man/man1/cmtk-groupwise_init.1 usr/share/man/man1/cmtk-groupwise_warp.1 usr/share/man/man1/cmtk-hausdorff.1 usr/share/man/man1/cmtk-histogram.1 usr/share/man/man1/cmtk-imagemath.1 usr/share/man/man1/cmtk-interleaved_bad_slices.1 usr/share/man/man1/cmtk-iterative_shape_averaging.1 usr/share/man/man1/cmtk-jidb.1 usr/share/man/man1/cmtk-levelset.1 usr/share/man/man1/cmtk-lmsba.1 usr/share/man/man1/cmtk-lsba.1 usr/share/man/man1/cmtk-lvote.1 usr/share/man/man1/cmtk-make_initial_affine.1 usr/share/man/man1/cmtk-mat2dof.1 usr/share/man/man1/cmtk-mcaffine.1 usr/share/man/man1/cmtk-mcwarp.1 usr/share/man/man1/cmtk-mk_adni_phantom.1 usr/share/man/man1/cmtk-mk_analyze_hdr.1 usr/share/man/man1/cmtk-mk_nifti_hdr.1 usr/share/man/man1/cmtk-mk_phantom_3d.1 usr/share/man/man1/cmtk-mrbias.1 usr/share/man/man1/cmtk-overlap.1 usr/share/man/man1/cmtk-probe.1 usr/share/man/man1/cmtk-pxsearch.1 usr/share/man/man1/cmtk-reformatx.1 usr/share/man/man1/cmtk-registration.1 usr/share/man/man1/cmtk-registrationx.1 usr/share/man/man1/cmtk-regress.1 usr/share/man/man1/cmtk-reorient.1 usr/share/man/man1/cmtk-sba.1 usr/share/man/man1/cmtk-sbai.1 usr/share/man/man1/cmtk-sequence.1 usr/share/man/man1/cmtk-similarity.1 usr/share/man/man1/cmtk-split.1 usr/share/man/man1/cmtk-statistics.1 usr/share/man/man1/cmtk-stream_pixels.1 usr/share/man/man1/cmtk-streamxform.1 usr/share/man/man1/cmtk-sympl.1 usr/share/man/man1/cmtk-symplx.1 usr/share/man/man1/cmtk-ttest.1 usr/share/man/man1/cmtk-unsplit.1 usr/share/man/man1/cmtk-unwarp_image_phantom.1 usr/share/man/man1/cmtk-vol2csv.1 usr/share/man/man1/cmtk-volume_injection.1 usr/share/man/man1/cmtk-volume_reconstruction.1 usr/share/man/man1/cmtk-vtkxform.1 usr/share/man/man1/cmtk-warp.1 usr/share/man/man1/cmtk-warp2ps.1 usr/share/man/man1/cmtk-warpx.1 usr/share/man/man1/cmtk-xform2dfield.1 usr/share/man/man1/cmtk-xform2itk.1 usr/share/man/man1/cmtk-xform2scalar.1 usr/share/man/man1/cmtk.1 cd '/build/cmtk-3.3.1p2+dfsg' dh_fixperms find debian/cmtk ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/cmtk/usr/share/doc -type f -a -true -a ! -regex 'debian/cmtk/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/cmtk/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/cmtk/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/cmtk -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/cmtk/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/cmtk/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing dh_dwz -a install -m0755 -d debian/cmtk/usr/lib/debug/.dwz/x86_64-linux-gnu dwz -mdebian/cmtk/usr/lib/debug/.dwz/x86_64-linux-gnu/cmtk.debug -M/usr/lib/debug/.dwz/x86_64-linux-gnu/cmtk.debug -- debian/cmtk/usr/lib/cmtk/bin/asegment debian/cmtk/usr/lib/cmtk/bin/asegment_sri24 debian/cmtk/usr/lib/cmtk/bin/average_affine debian/cmtk/usr/lib/cmtk/bin/average_images debian/cmtk/usr/lib/cmtk/bin/average_labels debian/cmtk/usr/lib/cmtk/bin/avg_adm debian/cmtk/usr/lib/cmtk/bin/concat_affine debian/cmtk/usr/lib/cmtk/bin/convert_warp debian/cmtk/usr/lib/cmtk/bin/convertx debian/cmtk/usr/lib/cmtk/bin/dbtool debian/cmtk/usr/lib/cmtk/bin/dcm2image debian/cmtk/usr/lib/cmtk/bin/describe debian/cmtk/usr/lib/cmtk/bin/destripe debian/cmtk/usr/lib/cmtk/bin/detect_adni_phantom debian/cmtk/usr/lib/cmtk/bin/detect_spheres_matched_filter debian/cmtk/usr/lib/cmtk/bin/dof2mat debian/cmtk/usr/lib/cmtk/bin/dwi_mask_bad_slices debian/cmtk/usr/lib/cmtk/bin/epiunwarp debian/cmtk/usr/lib/cmtk/bin/fib2image debian/cmtk/usr/lib/cmtk/bin/fibxform debian/cmtk/usr/lib/cmtk/bin/film debian/cmtk/usr/lib/cmtk/bin/filter debian/cmtk/usr/lib/cmtk/bin/fit_affine_dfield debian/cmtk/usr/lib/cmtk/bin/fit_affine_xform debian/cmtk/usr/lib/cmtk/bin/fit_affine_xform_landmarks debian/cmtk/usr/lib/cmtk/bin/fit_spline_dfield debian/cmtk/usr/lib/cmtk/bin/fit_spline_xform debian/cmtk/usr/lib/cmtk/bin/geomatch debian/cmtk/usr/lib/cmtk/bin/glm debian/cmtk/usr/lib/cmtk/bin/gmm debian/cmtk/usr/lib/cmtk/bin/gregxform debian/cmtk/usr/lib/cmtk/bin/groupwise_affine debian/cmtk/usr/lib/cmtk/bin/groupwise_init debian/cmtk/usr/lib/cmtk/bin/groupwise_warp debian/cmtk/usr/lib/cmtk/bin/hausdorff debian/cmtk/usr/lib/cmtk/bin/histogram debian/cmtk/usr/lib/cmtk/bin/imagemath debian/cmtk/usr/lib/cmtk/bin/interleaved_bad_slices debian/cmtk/usr/lib/cmtk/bin/jidb debian/cmtk/usr/lib/cmtk/bin/levelset debian/cmtk/usr/lib/cmtk/bin/lmsba debian/cmtk/usr/lib/cmtk/bin/lsba debian/cmtk/usr/lib/cmtk/bin/lvote debian/cmtk/usr/lib/cmtk/bin/make_initial_affine debian/cmtk/usr/lib/cmtk/bin/mat2dof debian/cmtk/usr/lib/cmtk/bin/mcaffine debian/cmtk/usr/lib/cmtk/bin/mcwarp debian/cmtk/usr/lib/cmtk/bin/mk_adni_phantom debian/cmtk/usr/lib/cmtk/bin/mk_analyze_hdr debian/cmtk/usr/lib/cmtk/bin/mk_nifti_hdr debian/cmtk/usr/lib/cmtk/bin/mk_phantom_3d debian/cmtk/usr/lib/cmtk/bin/mrbias debian/cmtk/usr/lib/cmtk/bin/overlap debian/cmtk/usr/lib/cmtk/bin/probe debian/cmtk/usr/lib/cmtk/bin/pxsearch debian/cmtk/usr/lib/cmtk/bin/reformatx debian/cmtk/usr/lib/cmtk/bin/registration debian/cmtk/usr/lib/cmtk/bin/registrationx debian/cmtk/usr/lib/cmtk/bin/regress debian/cmtk/usr/lib/cmtk/bin/reorient debian/cmtk/usr/lib/cmtk/bin/sba debian/cmtk/usr/lib/cmtk/bin/sbai debian/cmtk/usr/lib/cmtk/bin/sequence debian/cmtk/usr/lib/cmtk/bin/similarity debian/cmtk/usr/lib/cmtk/bin/split debian/cmtk/usr/lib/cmtk/bin/statistics debian/cmtk/usr/lib/cmtk/bin/stream_pixels debian/cmtk/usr/lib/cmtk/bin/streamxform debian/cmtk/usr/lib/cmtk/bin/sympl debian/cmtk/usr/lib/cmtk/bin/symplx debian/cmtk/usr/lib/cmtk/bin/ttest debian/cmtk/usr/lib/cmtk/bin/unsplit debian/cmtk/usr/lib/cmtk/bin/unwarp_image_phantom debian/cmtk/usr/lib/cmtk/bin/vol2csv debian/cmtk/usr/lib/cmtk/bin/volume_injection debian/cmtk/usr/lib/cmtk/bin/volume_reconstruction debian/cmtk/usr/lib/cmtk/bin/vtkxform debian/cmtk/usr/lib/cmtk/bin/warp debian/cmtk/usr/lib/cmtk/bin/warp2ps debian/cmtk/usr/lib/cmtk/bin/warpx debian/cmtk/usr/lib/cmtk/bin/xform2dfield debian/cmtk/usr/lib/cmtk/bin/xform2itk debian/cmtk/usr/lib/cmtk/bin/xform2scalar debian/cmtk/usr/lib/cmtk/libNrrdIO.so debian/cmtk/usr/lib/cmtk/libcmtkBase.so debian/cmtk/usr/lib/cmtk/libcmtkIO.so debian/cmtk/usr/lib/cmtk/libcmtkMxml.so debian/cmtk/usr/lib/cmtk/libcmtkNumerics.so debian/cmtk/usr/lib/cmtk/libcmtkRecon.so debian/cmtk/usr/lib/cmtk/libcmtkRegistration.so debian/cmtk/usr/lib/cmtk/libcmtkSegmentation.so debian/cmtk/usr/lib/cmtk/libcmtkSystem.so dwz: debian/cmtk/usr/lib/cmtk/libNrrdIO.so: DWARF compression not beneficial - old size 199629 new size 202104 objcopy --compress-debug-sections debian/cmtk/usr/lib/debug/.dwz/x86_64-linux-gnu/cmtk.debug chmod 0644 -- debian/cmtk/usr/lib/debug/.dwz/x86_64-linux-gnu/cmtk.debug dh_strip -a install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c7 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/libcmtkRegistration.so debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c7/5af2c86c789069f155a6a618c86ef964032672.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c7/5af2c86c789069f155a6a618c86ef964032672.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/cmtk/usr/lib/cmtk/libcmtkRegistration.so objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c7/5af2c86c789069f155a6a618c86ef964032672.debug debian/cmtk/usr/lib/cmtk/libcmtkRegistration.so install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/16 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/libcmtkBase.so debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/16/7b3e9db95df39fa396c4a39ea8e64da003ca5c.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/16/7b3e9db95df39fa396c4a39ea8e64da003ca5c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/cmtk/usr/lib/cmtk/libcmtkBase.so objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/16/7b3e9db95df39fa396c4a39ea8e64da003ca5c.debug debian/cmtk/usr/lib/cmtk/libcmtkBase.so install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/7b objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/libcmtkSegmentation.so debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/7b/d288da9004cfb3abd49d707f6dd427722d0923.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/7b/d288da9004cfb3abd49d707f6dd427722d0923.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/cmtk/usr/lib/cmtk/libcmtkSegmentation.so objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/7b/d288da9004cfb3abd49d707f6dd427722d0923.debug debian/cmtk/usr/lib/cmtk/libcmtkSegmentation.so install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/5f objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/libcmtkIO.so debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/5f/d7df60b111babe5c692a379e2a91990d64f9b6.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/5f/d7df60b111babe5c692a379e2a91990d64f9b6.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/cmtk/usr/lib/cmtk/libcmtkIO.so objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/5f/d7df60b111babe5c692a379e2a91990d64f9b6.debug debian/cmtk/usr/lib/cmtk/libcmtkIO.so install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/1e objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/libcmtkSystem.so debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/1e/cc95c2de5ff8bad0d83b001d4014b288d2c051.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/1e/cc95c2de5ff8bad0d83b001d4014b288d2c051.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/cmtk/usr/lib/cmtk/libcmtkSystem.so objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/1e/cc95c2de5ff8bad0d83b001d4014b288d2c051.debug debian/cmtk/usr/lib/cmtk/libcmtkSystem.so install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/91 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/libcmtkRecon.so debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/91/bae0fa7db341436381a0626103e9ed7528c63f.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/91/bae0fa7db341436381a0626103e9ed7528c63f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/cmtk/usr/lib/cmtk/libcmtkRecon.so objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/91/bae0fa7db341436381a0626103e9ed7528c63f.debug debian/cmtk/usr/lib/cmtk/libcmtkRecon.so install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/39 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/libcmtkNumerics.so debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/39/c0faf9a15b1c8077896126390add37cfe4b0d2.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/39/c0faf9a15b1c8077896126390add37cfe4b0d2.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/cmtk/usr/lib/cmtk/libcmtkNumerics.so objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/39/c0faf9a15b1c8077896126390add37cfe4b0d2.debug debian/cmtk/usr/lib/cmtk/libcmtkNumerics.so install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/62 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/libcmtkMxml.so debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/62/e15fee2154dca5d5c6c4ec3b306327a766ead1.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/62/e15fee2154dca5d5c6c4ec3b306327a766ead1.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/cmtk/usr/lib/cmtk/libcmtkMxml.so objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/62/e15fee2154dca5d5c6c4ec3b306327a766ead1.debug debian/cmtk/usr/lib/cmtk/libcmtkMxml.so install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/08 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/libNrrdIO.so debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/08/c718945d92c8b1fd28bdcccd87abd47d9dc688.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/08/c718945d92c8b1fd28bdcccd87abd47d9dc688.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/cmtk/usr/lib/cmtk/libNrrdIO.so objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/08/c718945d92c8b1fd28bdcccd87abd47d9dc688.debug debian/cmtk/usr/lib/cmtk/libNrrdIO.so install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/54 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/xform2dfield debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/54/044dd41567b2f0d0502242f748ad42c5d55619.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/54/044dd41567b2f0d0502242f748ad42c5d55619.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/xform2dfield objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/54/044dd41567b2f0d0502242f748ad42c5d55619.debug debian/cmtk/usr/lib/cmtk/bin/xform2dfield install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/e5 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/xform2scalar debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/e5/07aa26731fccf8731447ebaaa45f51098abc25.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/e5/07aa26731fccf8731447ebaaa45f51098abc25.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/xform2scalar objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/e5/07aa26731fccf8731447ebaaa45f51098abc25.debug debian/cmtk/usr/lib/cmtk/bin/xform2scalar install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/63 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/xform2itk debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/63/1682bcda90f5e0408ab8642f433890362698e4.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/63/1682bcda90f5e0408ab8642f433890362698e4.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/xform2itk objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/63/1682bcda90f5e0408ab8642f433890362698e4.debug debian/cmtk/usr/lib/cmtk/bin/xform2itk install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/1b objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/warp2ps debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/1b/cf4d96b938eb81f265fe1a2b34ed4a6ab10aec.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/1b/cf4d96b938eb81f265fe1a2b34ed4a6ab10aec.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/warp2ps objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/1b/cf4d96b938eb81f265fe1a2b34ed4a6ab10aec.debug debian/cmtk/usr/lib/cmtk/bin/warp2ps install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/63 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/vtkxform debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/63/3259265f0869da51b58d53e732fb8ba157fdd0.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/63/3259265f0869da51b58d53e732fb8ba157fdd0.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/vtkxform objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/63/3259265f0869da51b58d53e732fb8ba157fdd0.debug debian/cmtk/usr/lib/cmtk/bin/vtkxform install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/2a objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/volume_reconstruction debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/2a/248a639786b1d913239ad354814e4b4a5cf0f2.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/2a/248a639786b1d913239ad354814e4b4a5cf0f2.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/volume_reconstruction objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/2a/248a639786b1d913239ad354814e4b4a5cf0f2.debug debian/cmtk/usr/lib/cmtk/bin/volume_reconstruction install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/de objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/unwarp_image_phantom debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/de/e28893d329f3b0dfed3e4d85964e69c8c77369.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/de/e28893d329f3b0dfed3e4d85964e69c8c77369.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/unwarp_image_phantom objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/de/e28893d329f3b0dfed3e4d85964e69c8c77369.debug debian/cmtk/usr/lib/cmtk/bin/unwarp_image_phantom install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/81 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/volume_injection debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/81/c24879be5a03dbee8bf70ed8f3910a8046d4f5.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/81/c24879be5a03dbee8bf70ed8f3910a8046d4f5.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/volume_injection objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/81/c24879be5a03dbee8bf70ed8f3910a8046d4f5.debug debian/cmtk/usr/lib/cmtk/bin/volume_injection install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/89 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/warpx debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/89/18ed529e35acf6f4114a8d911fdc18497bcce3.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/89/18ed529e35acf6f4114a8d911fdc18497bcce3.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/warpx objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/89/18ed529e35acf6f4114a8d911fdc18497bcce3.debug debian/cmtk/usr/lib/cmtk/bin/warpx install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/98 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/warp debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/98/e1e115f0d20b40ee716b857b708e7b847d7937.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/98/e1e115f0d20b40ee716b857b708e7b847d7937.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/warp objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/98/e1e115f0d20b40ee716b857b708e7b847d7937.debug debian/cmtk/usr/lib/cmtk/bin/warp install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/f7 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/unsplit debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/f7/98c7feac152205bd2bd5c10cc2f5fb912f4e08.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/f7/98c7feac152205bd2bd5c10cc2f5fb912f4e08.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/unsplit objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/f7/98c7feac152205bd2bd5c10cc2f5fb912f4e08.debug debian/cmtk/usr/lib/cmtk/bin/unsplit install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/b2 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/vol2csv debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/b2/cbac7c0fd3520c599cb7d4d6334fff85c6f272.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/b2/cbac7c0fd3520c599cb7d4d6334fff85c6f272.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/vol2csv objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/b2/cbac7c0fd3520c599cb7d4d6334fff85c6f272.debug debian/cmtk/usr/lib/cmtk/bin/vol2csv install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/95 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/sympl debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/95/100364163c01a93c7499c2134a8d986daa694f.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/95/100364163c01a93c7499c2134a8d986daa694f.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/sympl objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/95/100364163c01a93c7499c2134a8d986daa694f.debug debian/cmtk/usr/lib/cmtk/bin/sympl install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/33 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/ttest debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/33/5c04bfd73b25bc1bbf2cdb532300408d9047ec.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/33/5c04bfd73b25bc1bbf2cdb532300408d9047ec.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/ttest objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/33/5c04bfd73b25bc1bbf2cdb532300408d9047ec.debug debian/cmtk/usr/lib/cmtk/bin/ttest install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/2e objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/streamxform debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/2e/4423a1798ed15b779929b1917c8f926f5f5f59.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/2e/4423a1798ed15b779929b1917c8f926f5f5f59.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/streamxform objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/2e/4423a1798ed15b779929b1917c8f926f5f5f59.debug debian/cmtk/usr/lib/cmtk/bin/streamxform install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/71 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/symplx debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/71/215b0444ed7e0ab8960ee3ada00155e9a39c88.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/71/215b0444ed7e0ab8960ee3ada00155e9a39c88.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/symplx objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/71/215b0444ed7e0ab8960ee3ada00155e9a39c88.debug debian/cmtk/usr/lib/cmtk/bin/symplx install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/3e objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/statistics debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/3e/22a6b49467c7a3dd277bba422902c2a8fe4e26.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/3e/22a6b49467c7a3dd277bba422902c2a8fe4e26.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/statistics objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/3e/22a6b49467c7a3dd277bba422902c2a8fe4e26.debug debian/cmtk/usr/lib/cmtk/bin/statistics install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/a5 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/stream_pixels debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/a5/982338250bb7f8045a33b5f9bf0acd94dfe58f.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/a5/982338250bb7f8045a33b5f9bf0acd94dfe58f.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/stream_pixels objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/a5/982338250bb7f8045a33b5f9bf0acd94dfe58f.debug debian/cmtk/usr/lib/cmtk/bin/stream_pixels install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/10 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/split debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/10/087860ceded469afedf1eb274a96b46bac739f.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/10/087860ceded469afedf1eb274a96b46bac739f.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/split objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/10/087860ceded469afedf1eb274a96b46bac739f.debug debian/cmtk/usr/lib/cmtk/bin/split install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c5 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/mcwarp debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c5/6116169e144b79d30f06a57e19dfc6ebf1a9ce.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c5/6116169e144b79d30f06a57e19dfc6ebf1a9ce.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/mcwarp objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c5/6116169e144b79d30f06a57e19dfc6ebf1a9ce.debug debian/cmtk/usr/lib/cmtk/bin/mcwarp install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/a8 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/similarity debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/a8/505c50a7d8676d9293a232d697ffe044de3583.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/a8/505c50a7d8676d9293a232d697ffe044de3583.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/similarity objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/a8/505c50a7d8676d9293a232d697ffe044de3583.debug debian/cmtk/usr/lib/cmtk/bin/similarity install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/67 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/sbai debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/67/4f9b2081fa29bb99184a2b6b1ac6e091b32c8b.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/67/4f9b2081fa29bb99184a2b6b1ac6e091b32c8b.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/sbai objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/67/4f9b2081fa29bb99184a2b6b1ac6e091b32c8b.debug debian/cmtk/usr/lib/cmtk/bin/sbai install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/a5 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/sequence debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/a5/732d04d79698d5cecb6463755de903dff8914d.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/a5/732d04d79698d5cecb6463755de903dff8914d.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/sequence objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/a5/732d04d79698d5cecb6463755de903dff8914d.debug debian/cmtk/usr/lib/cmtk/bin/sequence install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/41 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/reformatx debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/41/75a7cdddcd03d530839d1f061e07e7797bf5ff.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/41/75a7cdddcd03d530839d1f061e07e7797bf5ff.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/reformatx objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/41/75a7cdddcd03d530839d1f061e07e7797bf5ff.debug debian/cmtk/usr/lib/cmtk/bin/reformatx install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/38 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/sba debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/38/6979b038f5da409fd861f7d1384f0cd4eaf0f1.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/38/6979b038f5da409fd861f7d1384f0cd4eaf0f1.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/sba objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/38/6979b038f5da409fd861f7d1384f0cd4eaf0f1.debug debian/cmtk/usr/lib/cmtk/bin/sba install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/f6 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/reorient debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/f6/4424e34dad2a103e6475270c772305869c1667.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/f6/4424e34dad2a103e6475270c772305869c1667.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/reorient objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/f6/4424e34dad2a103e6475270c772305869c1667.debug debian/cmtk/usr/lib/cmtk/bin/reorient install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/8a objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/regress debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/8a/62721f79963fd01268fcefaec259422f931a36.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/8a/62721f79963fd01268fcefaec259422f931a36.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/regress objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/8a/62721f79963fd01268fcefaec259422f931a36.debug debian/cmtk/usr/lib/cmtk/bin/regress install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/a4 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/probe debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/a4/aac588736cbcfa1409a3819af8294e8a014f3e.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/a4/aac588736cbcfa1409a3819af8294e8a014f3e.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/probe objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/a4/aac588736cbcfa1409a3819af8294e8a014f3e.debug debian/cmtk/usr/lib/cmtk/bin/probe install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/25 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/pxsearch debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/25/806ad22a851baabdd0272e4eb2e2cc996dc629.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/25/806ad22a851baabdd0272e4eb2e2cc996dc629.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/pxsearch objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/25/806ad22a851baabdd0272e4eb2e2cc996dc629.debug debian/cmtk/usr/lib/cmtk/bin/pxsearch install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/b8 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/mrbias debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/b8/d8096c27e79b3add999f5e0ede035b3c6e51ab.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/b8/d8096c27e79b3add999f5e0ede035b3c6e51ab.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/mrbias objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/b8/d8096c27e79b3add999f5e0ede035b3c6e51ab.debug debian/cmtk/usr/lib/cmtk/bin/mrbias install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/a8 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/registrationx debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/a8/f3118ce219982709a26cb3b71c3eb4d747015e.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/a8/f3118ce219982709a26cb3b71c3eb4d747015e.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/registrationx objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/a8/f3118ce219982709a26cb3b71c3eb4d747015e.debug debian/cmtk/usr/lib/cmtk/bin/registrationx install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/de objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/overlap debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/de/b790697cb7ed495e1dd1cf5980ce75088f2d39.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/de/b790697cb7ed495e1dd1cf5980ce75088f2d39.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/overlap objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/de/b790697cb7ed495e1dd1cf5980ce75088f2d39.debug debian/cmtk/usr/lib/cmtk/bin/overlap install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/ba objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/registration debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/ba/87ae2293b783ea87dae28ad0992edb9ce86f3d.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/ba/87ae2293b783ea87dae28ad0992edb9ce86f3d.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/registration objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/ba/87ae2293b783ea87dae28ad0992edb9ce86f3d.debug debian/cmtk/usr/lib/cmtk/bin/registration install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/93 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/mcaffine debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/93/9858d7d8d440a01c4ddab06f14491cde58f31b.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/93/9858d7d8d440a01c4ddab06f14491cde58f31b.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/mcaffine objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/93/9858d7d8d440a01c4ddab06f14491cde58f31b.debug debian/cmtk/usr/lib/cmtk/bin/mcaffine install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/6b objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/mk_phantom_3d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/6b/c016f30f1adba2106eeb41e17130fd38de61e3.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/6b/c016f30f1adba2106eeb41e17130fd38de61e3.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/mk_phantom_3d objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/6b/c016f30f1adba2106eeb41e17130fd38de61e3.debug debian/cmtk/usr/lib/cmtk/bin/mk_phantom_3d install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/98 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/mk_nifti_hdr debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/98/982c99ac9f3ea587fafbb999d842b7253ce41e.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/98/982c99ac9f3ea587fafbb999d842b7253ce41e.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/mk_nifti_hdr objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/98/982c99ac9f3ea587fafbb999d842b7253ce41e.debug debian/cmtk/usr/lib/cmtk/bin/mk_nifti_hdr install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/ac objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/mk_analyze_hdr debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/ac/25824f1950d50d1ec5b5b6f0e52606ee49a536.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/ac/25824f1950d50d1ec5b5b6f0e52606ee49a536.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/mk_analyze_hdr objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/ac/25824f1950d50d1ec5b5b6f0e52606ee49a536.debug debian/cmtk/usr/lib/cmtk/bin/mk_analyze_hdr install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/01 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/mk_adni_phantom debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/01/23806ad3674c7003cf88b363a50a8d148a4775.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/01/23806ad3674c7003cf88b363a50a8d148a4775.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/mk_adni_phantom objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/01/23806ad3674c7003cf88b363a50a8d148a4775.debug debian/cmtk/usr/lib/cmtk/bin/mk_adni_phantom install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/0d objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/mat2dof debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/0d/94c27f5c2214df9fce19781cbd7c90c274201a.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/0d/94c27f5c2214df9fce19781cbd7c90c274201a.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/mat2dof objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/0d/94c27f5c2214df9fce19781cbd7c90c274201a.debug debian/cmtk/usr/lib/cmtk/bin/mat2dof install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/4a objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/jidb debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/4a/327e189528218eceb089f53e46dc06522870b6.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/4a/327e189528218eceb089f53e46dc06522870b6.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/jidb objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/4a/327e189528218eceb089f53e46dc06522870b6.debug debian/cmtk/usr/lib/cmtk/bin/jidb install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/9d objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/make_initial_affine debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/9d/dbf539252ca640e47ee16d90bd318339af3a74.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/9d/dbf539252ca640e47ee16d90bd318339af3a74.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/make_initial_affine objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/9d/dbf539252ca640e47ee16d90bd318339af3a74.debug debian/cmtk/usr/lib/cmtk/bin/make_initial_affine install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/59 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/lvote debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/59/7bf094999152a85263fa235d4c728485837218.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/59/7bf094999152a85263fa235d4c728485837218.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/lvote objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/59/7bf094999152a85263fa235d4c728485837218.debug debian/cmtk/usr/lib/cmtk/bin/lvote install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c7 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/imagemath debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c7/49e0e3c562851ca5369213a5664dcb628ec284.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c7/49e0e3c562851ca5369213a5664dcb628ec284.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/imagemath objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c7/49e0e3c562851ca5369213a5664dcb628ec284.debug debian/cmtk/usr/lib/cmtk/bin/imagemath install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/7b objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/lsba debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/7b/9bbe171781400136016468af46183efd0c1c67.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/7b/9bbe171781400136016468af46183efd0c1c67.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/lsba objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/7b/9bbe171781400136016468af46183efd0c1c67.debug debian/cmtk/usr/lib/cmtk/bin/lsba install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/6c objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/lmsba debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/6c/86549c783f4cf93bce9ddb00fb1e240ca1418b.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/6c/86549c783f4cf93bce9ddb00fb1e240ca1418b.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/lmsba objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/6c/86549c783f4cf93bce9ddb00fb1e240ca1418b.debug debian/cmtk/usr/lib/cmtk/bin/lmsba install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c7 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/interleaved_bad_slices debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c7/b7343102a69aef6bacbd1bfccb795580a82b00.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c7/b7343102a69aef6bacbd1bfccb795580a82b00.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/interleaved_bad_slices objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c7/b7343102a69aef6bacbd1bfccb795580a82b00.debug debian/cmtk/usr/lib/cmtk/bin/interleaved_bad_slices install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/56 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/groupwise_warp debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/56/27723c0bfd91815ca975f26c697fc86a130364.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/56/27723c0bfd91815ca975f26c697fc86a130364.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/groupwise_warp objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/56/27723c0bfd91815ca975f26c697fc86a130364.debug debian/cmtk/usr/lib/cmtk/bin/groupwise_warp install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c5 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/levelset debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c5/a93d46b53bcfb6a44d50514c48307ba70946b6.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c5/a93d46b53bcfb6a44d50514c48307ba70946b6.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/levelset objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/c5/a93d46b53bcfb6a44d50514c48307ba70946b6.debug debian/cmtk/usr/lib/cmtk/bin/levelset install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/76 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/groupwise_affine debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/76/a7b8338a0e5f309c5059defc7d2119517f7265.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/76/a7b8338a0e5f309c5059defc7d2119517f7265.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/groupwise_affine objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/76/a7b8338a0e5f309c5059defc7d2119517f7265.debug debian/cmtk/usr/lib/cmtk/bin/groupwise_affine install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/50 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/histogram debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/50/b1e257ec34977aec9f2cdb06f4bbe7e0fe3624.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/50/b1e257ec34977aec9f2cdb06f4bbe7e0fe3624.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/histogram objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/50/b1e257ec34977aec9f2cdb06f4bbe7e0fe3624.debug debian/cmtk/usr/lib/cmtk/bin/histogram install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/cd objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/groupwise_init 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objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/62/587f5b4f5911b953ba395f719b5bb595371f30.debug debian/cmtk/usr/lib/cmtk/bin/hausdorff install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/77 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/glm debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/77/8bff1a21c6e42f20d8efefcee8e24413620cf0.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/77/8bff1a21c6e42f20d8efefcee8e24413620cf0.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/glm objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/77/8bff1a21c6e42f20d8efefcee8e24413620cf0.debug debian/cmtk/usr/lib/cmtk/bin/glm install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/d1 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/gregxform 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--add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/88/823da2ab9c98328e77e49dd87e7becd4f33e78.debug debian/cmtk/usr/lib/cmtk/bin/gmm install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/e2 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/fit_spline_xform debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/e2/2a17a6243b1168b5f88b12da7a6d5ea83fbb21.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/e2/2a17a6243b1168b5f88b12da7a6d5ea83fbb21.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/fit_spline_xform objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/e2/2a17a6243b1168b5f88b12da7a6d5ea83fbb21.debug debian/cmtk/usr/lib/cmtk/bin/fit_spline_xform install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/85 objcopy --only-keep-debug --compress-debug-sections 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--compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/fit_affine_xform debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/ef/03d54bd6abab2994d0f7a5594e85283546a439.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/ef/03d54bd6abab2994d0f7a5594e85283546a439.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/fit_affine_xform objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/ef/03d54bd6abab2994d0f7a5594e85283546a439.debug debian/cmtk/usr/lib/cmtk/bin/fit_affine_xform install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/ed objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/fit_affine_xform_landmarks debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/ed/7347cbe7a4aeb0ae88ffe11dacce2750261329.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/ed/7347cbe7a4aeb0ae88ffe11dacce2750261329.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/fit_affine_xform_landmarks objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/ed/7347cbe7a4aeb0ae88ffe11dacce2750261329.debug debian/cmtk/usr/lib/cmtk/bin/fit_affine_xform_landmarks install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/73 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/epiunwarp debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/73/9bdf97c3c086de54f63089669dbc5ddbddd2b0.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/73/9bdf97c3c086de54f63089669dbc5ddbddd2b0.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/epiunwarp objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/73/9bdf97c3c086de54f63089669dbc5ddbddd2b0.debug debian/cmtk/usr/lib/cmtk/bin/epiunwarp install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/94 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/filter debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/94/190b46da544b3aefaea12c905086a17b8531b1.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/94/190b46da544b3aefaea12c905086a17b8531b1.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/filter objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/94/190b46da544b3aefaea12c905086a17b8531b1.debug debian/cmtk/usr/lib/cmtk/bin/filter install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/92 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/fit_affine_dfield debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/92/e3e8afe5155aac22d6d24cdfddd9b7e4b18f34.debug chmod 0644 -- 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debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/fe objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/detect_adni_phantom debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/fe/2c3d7e799fde2084c6e25463072142f0e2329d.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/fe/2c3d7e799fde2084c6e25463072142f0e2329d.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/detect_adni_phantom objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/fe/2c3d7e799fde2084c6e25463072142f0e2329d.debug debian/cmtk/usr/lib/cmtk/bin/detect_adni_phantom install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/ea objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/destripe debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/ea/ba1c7dc180189fe720febb7f2c8b89636cd7d7.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/ea/ba1c7dc180189fe720febb7f2c8b89636cd7d7.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/destripe objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/ea/ba1c7dc180189fe720febb7f2c8b89636cd7d7.debug debian/cmtk/usr/lib/cmtk/bin/destripe install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/20 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/dbtool debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/20/00ac651035468ed4d89107aa86bd2377066076.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/20/00ac651035468ed4d89107aa86bd2377066076.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/dbtool objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/20/00ac651035468ed4d89107aa86bd2377066076.debug debian/cmtk/usr/lib/cmtk/bin/dbtool install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/3e objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/avg_adm debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/3e/0a0e7ca81434c34bbdb45238172c0f3b610210.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/3e/0a0e7ca81434c34bbdb45238172c0f3b610210.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/avg_adm objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/3e/0a0e7ca81434c34bbdb45238172c0f3b610210.debug debian/cmtk/usr/lib/cmtk/bin/avg_adm install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/5e objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/average_images debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/5e/df79a22f99f58b266087fa836d64e84651951e.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/5e/df79a22f99f58b266087fa836d64e84651951e.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/average_images objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/5e/df79a22f99f58b266087fa836d64e84651951e.debug debian/cmtk/usr/lib/cmtk/bin/average_images install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/6b objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/asegment_sri24 debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/6b/5162c622df9c380b104c6c6ad2d3399aedacf0.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/6b/5162c622df9c380b104c6c6ad2d3399aedacf0.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/asegment_sri24 objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/6b/5162c622df9c380b104c6c6ad2d3399aedacf0.debug debian/cmtk/usr/lib/cmtk/bin/asegment_sri24 install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/4e objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/average_affine debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/4e/68dcbddafc1f26de5ef294ef547e033ef794ea.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/4e/68dcbddafc1f26de5ef294ef547e033ef794ea.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/average_affine objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/4e/68dcbddafc1f26de5ef294ef547e033ef794ea.debug debian/cmtk/usr/lib/cmtk/bin/average_affine install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/61 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/concat_affine debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/61/ce93493207d20d52c2162e5a7719a5d9f8cb0b.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/61/ce93493207d20d52c2162e5a7719a5d9f8cb0b.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/concat_affine objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/61/ce93493207d20d52c2162e5a7719a5d9f8cb0b.debug debian/cmtk/usr/lib/cmtk/bin/concat_affine install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/0b objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/average_labels debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/0b/e63487201db605551807b7f1d49110ca055604.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/0b/e63487201db605551807b7f1d49110ca055604.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/average_labels objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/0b/e63487201db605551807b7f1d49110ca055604.debug debian/cmtk/usr/lib/cmtk/bin/average_labels install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/5a objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/convert_warp debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/5a/9b62fef4cd6fba279dc9aabbe635b6ff3a0330.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/5a/9b62fef4cd6fba279dc9aabbe635b6ff3a0330.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/convert_warp objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/5a/9b62fef4cd6fba279dc9aabbe635b6ff3a0330.debug debian/cmtk/usr/lib/cmtk/bin/convert_warp install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/d7 objcopy --only-keep-debug --compress-debug-sections debian/cmtk/usr/lib/cmtk/bin/asegment debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/d7/6c9c7bb9c9547acfa52b4cb3b5c54f62987c7e.debug chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/d7/6c9c7bb9c9547acfa52b4cb3b5c54f62987c7e.debug strip --remove-section=.comment --remove-section=.note debian/cmtk/usr/lib/cmtk/bin/asegment objcopy --add-gnu-debuglink debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.build-id/d7/6c9c7bb9c9547acfa52b4cb3b5c54f62987c7e.debug debian/cmtk/usr/lib/cmtk/bin/asegment install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/cmtk/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/cmtk/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/cmtk/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/cmtk/usr/lib/debug install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/usr/share/doc ln -s cmtk debian/.debhelper/cmtk/dbgsym-root/usr/share/doc/cmtk-dbgsym install -m0755 -d debian/.debhelper/cmtk dh_makeshlibs -a rm -f debian/cmtk/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/cmtk/DEBIAN dpkg-shlibdeps -Tdebian/cmtk.substvars debian/cmtk/usr/lib/cmtk/libcmtkRegistration.so debian/cmtk/usr/lib/cmtk/libcmtkBase.so debian/cmtk/usr/lib/cmtk/libcmtkSegmentation.so debian/cmtk/usr/lib/cmtk/libcmtkIO.so debian/cmtk/usr/lib/cmtk/libcmtkSystem.so debian/cmtk/usr/lib/cmtk/libcmtkRecon.so debian/cmtk/usr/lib/cmtk/libcmtkNumerics.so debian/cmtk/usr/lib/cmtk/libcmtkMxml.so debian/cmtk/usr/lib/cmtk/libNrrdIO.so debian/cmtk/usr/lib/cmtk/bin/xform2dfield debian/cmtk/usr/lib/cmtk/bin/xform2scalar debian/cmtk/usr/lib/cmtk/bin/xform2itk debian/cmtk/usr/lib/cmtk/bin/warp2ps debian/cmtk/usr/lib/cmtk/bin/vtkxform debian/cmtk/usr/lib/cmtk/bin/volume_reconstruction debian/cmtk/usr/lib/cmtk/bin/unwarp_image_phantom debian/cmtk/usr/lib/cmtk/bin/volume_injection debian/cmtk/usr/lib/cmtk/bin/warpx debian/cmtk/usr/lib/cmtk/bin/warp debian/cmtk/usr/lib/cmtk/bin/unsplit debian/cmtk/usr/lib/cmtk/bin/vol2csv debian/cmtk/usr/lib/cmtk/bin/sympl debian/cmtk/usr/lib/cmtk/bin/ttest debian/cmtk/usr/lib/cmtk/bin/streamxform debian/cmtk/usr/lib/cmtk/bin/symplx debian/cmtk/usr/lib/cmtk/bin/statistics debian/cmtk/usr/lib/cmtk/bin/stream_pixels debian/cmtk/usr/lib/cmtk/bin/split debian/cmtk/usr/lib/cmtk/bin/mcwarp debian/cmtk/usr/lib/cmtk/bin/similarity debian/cmtk/usr/lib/cmtk/bin/sbai debian/cmtk/usr/lib/cmtk/bin/sequence debian/cmtk/usr/lib/cmtk/bin/reformatx debian/cmtk/usr/lib/cmtk/bin/sba debian/cmtk/usr/lib/cmtk/bin/reorient debian/cmtk/usr/lib/cmtk/bin/regress debian/cmtk/usr/lib/cmtk/bin/probe debian/cmtk/usr/lib/cmtk/bin/pxsearch debian/cmtk/usr/lib/cmtk/bin/mrbias debian/cmtk/usr/lib/cmtk/bin/registrationx debian/cmtk/usr/lib/cmtk/bin/overlap debian/cmtk/usr/lib/cmtk/bin/registration debian/cmtk/usr/lib/cmtk/bin/mcaffine debian/cmtk/usr/lib/cmtk/bin/mk_phantom_3d debian/cmtk/usr/lib/cmtk/bin/mk_nifti_hdr debian/cmtk/usr/lib/cmtk/bin/mk_analyze_hdr debian/cmtk/usr/lib/cmtk/bin/mk_adni_phantom debian/cmtk/usr/lib/cmtk/bin/mat2dof debian/cmtk/usr/lib/cmtk/bin/jidb debian/cmtk/usr/lib/cmtk/bin/make_initial_affine debian/cmtk/usr/lib/cmtk/bin/lvote debian/cmtk/usr/lib/cmtk/bin/imagemath debian/cmtk/usr/lib/cmtk/bin/lsba debian/cmtk/usr/lib/cmtk/bin/lmsba debian/cmtk/usr/lib/cmtk/bin/interleaved_bad_slices debian/cmtk/usr/lib/cmtk/bin/groupwise_warp debian/cmtk/usr/lib/cmtk/bin/levelset debian/cmtk/usr/lib/cmtk/bin/groupwise_affine debian/cmtk/usr/lib/cmtk/bin/histogram debian/cmtk/usr/lib/cmtk/bin/groupwise_init debian/cmtk/usr/lib/cmtk/bin/hausdorff debian/cmtk/usr/lib/cmtk/bin/glm debian/cmtk/usr/lib/cmtk/bin/gregxform debian/cmtk/usr/lib/cmtk/bin/gmm debian/cmtk/usr/lib/cmtk/bin/fit_spline_xform debian/cmtk/usr/lib/cmtk/bin/fit_spline_dfield debian/cmtk/usr/lib/cmtk/bin/film debian/cmtk/usr/lib/cmtk/bin/geomatch debian/cmtk/usr/lib/cmtk/bin/fit_affine_xform debian/cmtk/usr/lib/cmtk/bin/fit_affine_xform_landmarks debian/cmtk/usr/lib/cmtk/bin/epiunwarp debian/cmtk/usr/lib/cmtk/bin/filter debian/cmtk/usr/lib/cmtk/bin/fit_affine_dfield debian/cmtk/usr/lib/cmtk/bin/fibxform debian/cmtk/usr/lib/cmtk/bin/fib2image debian/cmtk/usr/lib/cmtk/bin/dwi_mask_bad_slices debian/cmtk/usr/lib/cmtk/bin/dcm2image debian/cmtk/usr/lib/cmtk/bin/dof2mat debian/cmtk/usr/lib/cmtk/bin/describe debian/cmtk/usr/lib/cmtk/bin/convertx debian/cmtk/usr/lib/cmtk/bin/detect_spheres_matched_filter debian/cmtk/usr/lib/cmtk/bin/detect_adni_phantom debian/cmtk/usr/lib/cmtk/bin/destripe debian/cmtk/usr/lib/cmtk/bin/dbtool debian/cmtk/usr/lib/cmtk/bin/avg_adm debian/cmtk/usr/lib/cmtk/bin/average_images debian/cmtk/usr/lib/cmtk/bin/asegment_sri24 debian/cmtk/usr/lib/cmtk/bin/average_affine debian/cmtk/usr/lib/cmtk/bin/concat_affine debian/cmtk/usr/lib/cmtk/bin/average_labels debian/cmtk/usr/lib/cmtk/bin/convert_warp debian/cmtk/usr/lib/cmtk/bin/asegment dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRecon.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRecon.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkBase.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkNumerics.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkNumerics.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSystem.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkMxml.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkRegistration.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSegmentation.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcmtkSegmentation.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libNrrdIO.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libNrrdIO.so' dpkg-shlibdeps: warning: debian/cmtk/usr/lib/cmtk/libNrrdIO.so contains an unresolvable reference to symbol sqrt: it's probably a plugin dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/cmtk/usr/lib/cmtk/bin/mk_analyze_hdr debian/cmtk/usr/lib/cmtk/bin/mk_nifti_hdr debian/cmtk/usr/lib/cmtk/bin/sequence debian/cmtk/usr/lib/cmtk/libcmtkBase.so were not linked against libfftw3_threads.so.3 (they use none of the library's symbols) dh_installdeb install -m0755 -d debian/cmtk/DEBIAN find debian/cmtk/etc -type f -printf '/etc/%P ' | LC_ALL=C sort >> debian/cmtk/DEBIAN/conffiles chmod 0644 -- debian/cmtk/DEBIAN/conffiles dh_gencontrol install -m0755 -d debian/cmtk/DEBIAN echo misc:Depends= >> debian/cmtk.substvars echo misc:Pre-Depends= >> debian/cmtk.substvars install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/DEBIAN dpkg-gencontrol -pcmtk -ldebian/changelog -Tdebian/cmtk.substvars -Pdebian/.debhelper/cmtk/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=cmtk-dbgsym "-DDepends=cmtk (= 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b8d8096c27e79b3add999f5e0ede035b3c6e51ab ba87ae2293b783ea87dae28ad0992edb9ce86f3d c56116169e144b79d30f06a57e19dfc6ebf1a9ce c5a93d46b53bcfb6a44d50514c48307ba70946b6 c749e0e3c562851ca5369213a5664dcb628ec284 c75af2c86c789069f155a6a618c86ef964032672 c7a9075bdc946942024ca3e13fec519d5dd6c2d8 c7b7343102a69aef6bacbd1bfccb795580a82b00 cda10d223a41ce00abba1fa3136f58674ee8073b d1d633fd595712106525af7fba27a386459f64d6 d4796744f0af7ece2dc157119e482e794ad0293b d76c9c7bb9c9547acfa52b4cb3b5c54f62987c7e deb790697cb7ed495e1dd1cf5980ce75088f2d39 dee28893d329f3b0dfed3e4d85964e69c8c77369 e22a17a6243b1168b5f88b12da7a6d5ea83fbb21 e507aa26731fccf8731447ebaaa45f51098abc25 eaba1c7dc180189fe720febb7f2c8b89636cd7d7 ed7347cbe7a4aeb0ae88ffe11dacce2750261329 ef03d54bd6abab2994d0f7a5594e85283546a439 f64424e34dad2a103e6475270c772305869c1667 f798c7feac152205bd2bd5c10cc2f5fb912f4e08 fe2c3d7e799fde2084c6e25463072142f0e2329d" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/DEBIAN/control dpkg-gencontrol -pcmtk -ldebian/changelog -Tdebian/cmtk.substvars -Pdebian/cmtk chmod 0644 -- debian/cmtk/DEBIAN/control dh_md5sums install -m0755 -d debian/cmtk/DEBIAN cd debian/cmtk >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/cmtk/DEBIAN/md5sums install -m0755 -d debian/.debhelper/cmtk/dbgsym-root/DEBIAN cd debian/.debhelper/cmtk/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/cmtk/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/cmtk .. dpkg-deb --root-owner-group --build debian/.debhelper/cmtk/dbgsym-root .. dpkg-deb: building package 'cmtk-dbgsym' in '../cmtk-dbgsym_3.3.1p2+dfsg-2_amd64.deb'. dpkg-deb: building package 'cmtk' in '../cmtk_3.3.1p2+dfsg-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../cmtk_3.3.1p2+dfsg-2_amd64.buildinfo dpkg-genchanges --build=binary -O../cmtk_3.3.1p2+dfsg-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2055053 and its subdirectories I: Current time: Fri Jun 21 03:00:07 -12 2024 I: pbuilder-time-stamp: 1718982007