I: pbuilder: network access will be disabled during build I: Current time: Fri May 19 12:02:18 -12 2023 I: pbuilder-time-stamp: 1684540938 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [circlator_1.5.6-7.dsc] I: copying [./circlator_1.5.6.orig.tar.gz] I: copying [./circlator_1.5.6-7.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Dec 3 09:53:15 2022 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./circlator_1.5.6-7.dsc: no acceptable signature found dpkg-source: info: extracting circlator in circlator-1.5.6 dpkg-source: info: unpacking circlator_1.5.6.orig.tar.gz dpkg-source: info: unpacking circlator_1.5.6-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_canu_detection.patch dpkg-source: info: applying switch-to-pytest.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2134681/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='58162433000445849f97bcb1cccf6bd9' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2134681' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.gKmSO374/pbuilderrc_GX4J --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.gKmSO374/b1 --logfile b1/build.log circlator_1.5.6-7.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos1-amd64 5.10.0-23-amd64 #1 SMP Debian 5.10.179-1 (2023-05-12) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Apr 23 09:23 bash -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 01:20 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 22 22:02 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 85600 Mar 22 22:02 findmnt -rwsr-xr-x 1 root root 35128 Mar 22 20:35 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 00:40 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 22 22:02 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 22 22:02 more -rwsr-xr-x 1 root root 59704 Mar 22 22:02 mount -rwxr-xr-x 1 root root 18744 Mar 22 22:02 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 09:23 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 22 22:02 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 02:25 tar -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 22 20:35 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 22 22:02 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 22 22:02 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/2134681/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools, python3-openpyxl, python3-jdcal, fastaq, python3-pysam, python3-pymummer, python3-pytest, spades, bwa, prodigal, canu (<< 1.8+dfsg-1) | canu (>= 1.8+dfsg-2) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-openpyxl; however: Package python3-openpyxl is not installed. pbuilder-satisfydepends-dummy depends on python3-jdcal; however: Package python3-jdcal is not installed. pbuilder-satisfydepends-dummy depends on fastaq; however: Package fastaq is not installed. pbuilder-satisfydepends-dummy depends on python3-pysam; however: Package python3-pysam is not installed. pbuilder-satisfydepends-dummy depends on python3-pymummer; however: Package python3-pymummer is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on spades; however: Package spades is not installed. pbuilder-satisfydepends-dummy depends on bwa; however: Package bwa is not installed. pbuilder-satisfydepends-dummy depends on prodigal; however: Package prodigal is not installed. pbuilder-satisfydepends-dummy depends on canu (<< 1.8+dfsg-1) | canu (>= 1.8+dfsg-2); however: Package canu is not installed. Package canu is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: adwaita-icon-theme{a} aglfn{a} at-spi2-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bamtools{a} binfmt-support{a} bsdextrautils{a} bwa{a} ca-certificates{a} ca-certificates-java{a} canu{a} dbus{a} dbus-bin{a} dbus-daemon{a} dbus-session-bus-common{a} dbus-system-bus-common{a} dbus-user-session{a} dconf-gsettings-backend{a} dconf-service{a} debhelper{a} default-jre-headless{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dmsetup{a} dwz{a} fastaq{a} fastjar{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} gawk{a} gettext{a} gettext-base{a} gnuplot{a} gnuplot-data{a} gnuplot-qt{a} groff-base{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} intltool-debian{a} jaligner{a} jarwrapper{a} java-common{a} libabsl20220623{a} libaom3{a} libapache-pom-java{a} libapparmor1{a} libarchive-zip-perl{a} libargon2-1{a} libasound2{a} libasound2-data{a} libatinject-jsr330-api-java{a} libatk-bridge2.0-0{a} libatk1.0-0{a} libatspi2.0-0{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libavif15{a} libbamtools2.5.2{a} libbrotli1{a} libbsd0{a} libcairo-gobject2{a} libcairo2{a} libcolord2{a} libcommons-compress-java{a} libcommons-parent-java{a} libcryptsetup12{a} libcups2{a} libcurl3-gnutls{a} libdatrie1{a} libdav1d6{a} libdbus-1-3{a} libdconf1{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libdevmapper1.02.1{a} libdouble-conversion3{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libegl-mesa0{a} libegl1{a} libelf1{a} libepoxy0{a} liberror-prone-java{a} libevdev2{a} libexpat1{a} libfastutil-java{a} libfdisk1{a} libfile-stripnondeterminism-perl{a} libfilesys-df-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgbm1{a} libgd3{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgtk-3-0{a} libgtk-3-common{a} libguava-java{a} libgudev-1.0-0{a} libharfbuzz0b{a} libheif1{a} libhts3{a} libhtscodecs2{a} libice6{a} libicu72{a} libinput-bin{a} libinput10{a} libip4tc2{a} libjbig0{a} libjpeg62-turbo{a} libjson-c5{a} libjsoncpp25{a} libjsr305-java{a} libkmod2{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} libllvm15{a} liblua5.4-0{a} libmagic-mgc{a} libmagic1{a} libmd4c0{a} libmtdev1{a} libncurses6{a} libnghttp2-14{a} libnlopt0{a} libnotify4{a} libnspr4{a} libnss3{a} libnuma1{a} libpam-systemd{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpciaccess0{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcsclite1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libproc2-0{a} libpsl5{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libqt5core5a{a} libqt5dbus5{a} libqt5gui5{a} libqt5network5{a} libqt5printsupport5{a} libqt5svg5{a} libqt5widgets5{a} librav1e0{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsigsegv2{a} libsm6{a} libssh2-1{a} libssw-java{a} libssw0{a} libsub-override-perl{a} libsvtav1enc1{a} libsystemd-shared{a} libthai-data{a} libthai0{a} libtiff6{a} libtool{a} libuchardet0{a} libwacom-common{a} libwacom9{a} libwayland-client0{a} libwayland-cursor0{a} libwayland-egl1{a} libwayland-server0{a} libwebp7{a} libwxbase3.2-1{a} libwxgtk3.2-1{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libx265-199{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-icccm4{a} libxcb-image0{a} libxcb-keysyms1{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render-util0{a} libxcb-render0{a} libxcb-shape0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-util1{a} libxcb-xfixes0{a} libxcb-xinerama0{a} libxcb-xinput0{a} libxcb-xkb1{a} libxcb1{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxi6{a} libxinerama1{a} libxkbcommon-x11-0{a} libxkbcommon0{a} libxml2{a} libxpm4{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxslt1.1{a} libxtst6{a} libxxf86vm1{a} libyaml-0-2{a} libyuv0{a} libz3-4{a} m4{a} man-db{a} media-types{a} mhap{a} mummer{a} openjdk-17-jre-headless{a} openssl{a} po-debconf{a} procps{a} prodigal{a} python3{a} python3-all{a} python3-attr{a} python3-distutils{a} python3-et-xmlfile{a} python3-iniconfig{a} python3-jdcal{a} python3-joblib{a} python3-lib2to3{a} python3-lxml{a} python3-minimal{a} python3-more-itertools{a} python3-openpyxl{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-py{a} python3-pymummer{a} python3-pysam{a} python3-pytest{a} python3-setuptools{a} python3-yaml{a} python3.11{a} python3.11-minimal{a} readline-common{a} samtools{a} sensible-utils{a} shared-mime-info{a} spades{a} systemd{a} systemd-sysv{a} x11-common{a} xkb-data{a} The following packages are RECOMMENDED but will NOT be installed: alsa-topology-conf alsa-ucm-conf at-spi2-core chrony curl libarchive-cpio-perl libgdk-pixbuf2.0-bin libglib2.0-data libgpm2 libgtk-3-bin libldap-common libltdl-dev libmail-sendmail-perl libnss-systemd librsvg2-common libsasl2-modules lynx ntpsec openntpd psmisc publicsuffix python3-bs4 python3-html5lib python3-numpy python3-pil python3-psutil python3-pygments python3-simplejson qt5-gtk-platformtheme qttranslations5-l10n qtwayland5 systemd-timesyncd wget xdg-user-dirs 0 packages upgraded, 293 newly installed, 0 to remove and 0 not upgraded. Need to get 214 MB of archives. After unpacking 822 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 libargon2-1 amd64 0~20171227-0.3+deb12u1 [19.4 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 dmsetup amd64 2:1.02.185-2 [82.0 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 libdevmapper1.02.1 amd64 2:1.02.185-2 [133 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 libjson-c5 amd64 0.16-2 [44.1 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 libcryptsetup12 amd64 2:2.6.1-4~deb12u1 [223 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 libfdisk1 amd64 2.38.1-5+b1 [194 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 libkmod2 amd64 30+20221128-1 [57.9 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 libapparmor1 amd64 3.0.8-3 [41.2 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 libip4tc2 amd64 1.8.9-2 [19.0 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 libsystemd-shared amd64 252.6-1 [1685 kB] Get: 11 http://deb.debian.org/debian bookworm/main amd64 systemd amd64 252.6-1 [3018 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 systemd-sysv amd64 252.6-1 [41.5 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 libdbus-1-3 amd64 1.14.6-1 [200 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 dbus-bin amd64 1.14.6-1 [104 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 dbus-session-bus-common all 1.14.6-1 [76.6 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 dbus-daemon amd64 1.14.6-1 [182 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 dbus-system-bus-common all 1.14.6-1 [77.7 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 dbus amd64 1.14.6-1 [95.7 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 binfmt-support amd64 2.2.2-2 [64.0 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 libsigsegv2 amd64 2.14-1 [37.2 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 gawk amd64 1:5.2.1-2 [673 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6 [572 kB] Get: 32 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get: 33 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get: 34 http://deb.debian.org/debian bookworm/main amd64 libproc2-0 amd64 2:4.0.2-3 [62.8 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 procps amd64 2:4.0.2-3 [709 kB] Get: 36 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 openssl amd64 3.0.8-1 [1407 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 ca-certificates all 20230311 [153 kB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 41 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 43 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 libpam-systemd amd64 252.6-1 [223 kB] Get: 46 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 47 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 48 http://deb.debian.org/debian bookworm/main amd64 hicolor-icon-theme all 0.17-2 [11.4 kB] Get: 49 http://deb.debian.org/debian bookworm/main amd64 libgdk-pixbuf2.0-common all 2.42.10+dfsg-1 [306 kB] Get: 50 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.74.6-2 [1398 kB] Get: 51 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 52 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB] Get: 53 http://deb.debian.org/debian bookworm/main amd64 shared-mime-info amd64 2.2-1 [729 kB] Get: 54 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.5-2 [166 kB] Get: 55 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.39-2 [276 kB] Get: 56 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB] Get: 57 http://deb.debian.org/debian bookworm/main amd64 libjbig0 amd64 2.1-6.1 [31.7 kB] Get: 58 http://deb.debian.org/debian bookworm/main amd64 liblerc4 amd64 4.0.0+ds-2 [170 kB] Get: 59 http://deb.debian.org/debian bookworm/main amd64 libwebp7 amd64 1.2.4-0.1 [285 kB] Get: 60 http://deb.debian.org/debian bookworm/main amd64 libtiff6 amd64 4.5.0-5 [316 kB] Get: 61 http://deb.debian.org/debian bookworm/main amd64 libgdk-pixbuf-2.0-0 amd64 2.42.10+dfsg-1+b1 [139 kB] Get: 62 http://deb.debian.org/debian bookworm/main amd64 gtk-update-icon-cache amd64 3.24.37-2 [43.3 kB] Get: 63 http://deb.debian.org/debian bookworm/main amd64 adwaita-icon-theme all 43-1 [5124 kB] Get: 64 http://deb.debian.org/debian bookworm/main amd64 aglfn all 1.7+git20191031.4036a9c-2 [30.5 kB] Get: 65 http://deb.debian.org/debian bookworm/main amd64 at-spi2-common all 2.46.0-5 [162 kB] Get: 66 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 67 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 68 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 69 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 70 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 71 http://deb.debian.org/debian bookworm/main amd64 libbamtools2.5.2 amd64 2.5.2+dfsg-4 [149 kB] Get: 72 http://deb.debian.org/debian bookworm/main amd64 libjsoncpp25 amd64 1.9.5-4 [78.6 kB] Get: 73 http://deb.debian.org/debian bookworm/main amd64 bamtools amd64 2.5.2+dfsg-4 [193 kB] Get: 74 http://deb.debian.org/debian bookworm/main amd64 bwa amd64 0.7.17-7+b2 [212 kB] Get: 75 http://deb.debian.org/debian bookworm/main amd64 java-common all 0.74 [6388 B] Get: 76 http://deb.debian.org/debian bookworm/main amd64 libavahi-common-data amd64 0.8-10 [107 kB] Get: 77 http://deb.debian.org/debian bookworm/main amd64 libavahi-common3 amd64 0.8-10 [41.6 kB] Get: 78 http://deb.debian.org/debian bookworm/main amd64 libavahi-client3 amd64 0.8-10 [45.5 kB] Get: 79 http://deb.debian.org/debian bookworm/main amd64 libcups2 amd64 2.4.2-3 [244 kB] Get: 80 http://deb.debian.org/debian bookworm/main amd64 liblcms2-2 amd64 2.14-2 [154 kB] Get: 81 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get: 82 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.12.1+dfsg-5 [399 kB] Get: 83 http://deb.debian.org/debian bookworm/main amd64 fonts-dejavu-core all 2.37-6 [1068 kB] Get: 84 http://deb.debian.org/debian bookworm/main amd64 fontconfig-config amd64 2.14.1-4 [315 kB] Get: 85 http://deb.debian.org/debian bookworm/main amd64 libfontconfig1 amd64 2.14.1-4 [386 kB] Get: 86 http://deb.debian.org/debian bookworm/main amd64 libnspr4 amd64 2:4.35-1 [113 kB] Get: 87 http://deb.debian.org/debian bookworm/main amd64 libnss3 amd64 2:3.87.1-1 [1331 kB] Get: 88 http://deb.debian.org/debian bookworm/main amd64 libasound2-data all 1.2.8-1 [20.5 kB] Get: 89 http://deb.debian.org/debian bookworm/main amd64 libasound2 amd64 1.2.8-1+b1 [362 kB] Get: 90 http://deb.debian.org/debian bookworm/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get: 91 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz0b amd64 6.0.0+dfsg-3 [1945 kB] Get: 92 http://deb.debian.org/debian bookworm/main amd64 libpcsclite1 amd64 1.9.9-2 [49.7 kB] Get: 93 http://deb.debian.org/debian bookworm/main amd64 openjdk-17-jre-headless amd64 17.0.6+10-1 [43.6 MB] Get: 94 http://deb.debian.org/debian bookworm/main amd64 default-jre-headless amd64 2:1.17-74 [2936 B] Get: 95 http://deb.debian.org/debian bookworm/main amd64 ca-certificates-java all 20230103 [11.4 kB] Get: 96 http://deb.debian.org/debian bookworm/main amd64 libfilesys-df-perl amd64 0.92-7+b1 [11.4 kB] Get: 97 http://deb.debian.org/debian bookworm/main amd64 fastjar amd64 2:0.98-7 [80.1 kB] Get: 98 http://deb.debian.org/debian bookworm/main amd64 jarwrapper all 0.78 [21.8 kB] Get: 99 http://deb.debian.org/debian bookworm/main amd64 libapache-pom-java all 29-2 [5276 B] Get: 100 http://deb.debian.org/debian bookworm/main amd64 libcommons-parent-java all 56-1 [10.8 kB] Get: 101 http://deb.debian.org/debian bookworm/main amd64 libcommons-compress-java all 1.22-1 [615 kB] Get: 102 http://deb.debian.org/debian bookworm/main amd64 libfastutil-java all 8.5.11+dfsg-1 [19.6 MB] Get: 103 http://deb.debian.org/debian bookworm/main amd64 libatinject-jsr330-api-java all 1.0+ds1-5 [5312 B] Get: 104 http://deb.debian.org/debian bookworm/main amd64 liberror-prone-java all 2.18.0-1 [22.5 kB] Get: 105 http://deb.debian.org/debian bookworm/main amd64 libjsr305-java all 0.1~+svn49-11 [26.9 kB] Get: 106 http://deb.debian.org/debian bookworm/main amd64 libguava-java all 31.1-1 [2613 kB] Get: 107 http://deb.debian.org/debian bookworm/main amd64 jaligner all 1.0+dfsg-10 [132 kB] Get: 108 http://deb.debian.org/debian bookworm/main amd64 libssw-java amd64 1.1-13 [16.7 kB] Get: 109 http://deb.debian.org/debian bookworm/main amd64 mhap all 2.1.3+dfsg-3 [160 kB] Get: 110 http://deb.debian.org/debian bookworm/main amd64 gnuplot-data all 5.4.4+dfsg1-2 [72.1 kB] Get: 111 http://deb.debian.org/debian bookworm/main amd64 libpixman-1-0 amd64 0.42.2-1 [546 kB] Get: 112 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get: 113 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB] Get: 114 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 115 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get: 116 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.8.4-2 [292 kB] Get: 117 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.8.4-2 [759 kB] Get: 118 http://deb.debian.org/debian bookworm/main amd64 libxcb-render0 amd64 1.15-1 [115 kB] Get: 119 http://deb.debian.org/debian bookworm/main amd64 libxcb-shm0 amd64 1.15-1 [105 kB] Get: 120 http://deb.debian.org/debian bookworm/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get: 121 http://deb.debian.org/debian bookworm/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get: 122 http://deb.debian.org/debian bookworm/main amd64 libcairo2 amd64 1.16.0-7 [575 kB] Get: 123 http://deb.debian.org/debian bookworm/main amd64 libedit2 amd64 3.1-20221030-2 [93.0 kB] Get: 124 http://deb.debian.org/debian bookworm/main amd64 libaom3 amd64 3.6.0-1 [1851 kB] Get: 125 http://deb.debian.org/debian bookworm/main amd64 libdav1d6 amd64 1.0.0-2 [495 kB] Get: 126 http://deb.debian.org/debian bookworm/main amd64 libabsl20220623 amd64 20220623.1-1 [391 kB] Get: 127 http://deb.debian.org/debian bookworm/main amd64 libgav1-1 amd64 0.18.0-1+b1 [332 kB] Get: 128 http://deb.debian.org/debian bookworm/main amd64 librav1e0 amd64 0.5.1-6 [763 kB] Get: 129 http://deb.debian.org/debian bookworm/main amd64 libsvtav1enc1 amd64 1.4.1+dfsg-1 [2121 kB] Get: 130 http://deb.debian.org/debian bookworm/main amd64 libyuv0 amd64 0.0~git20230123.b2528b0-1 [168 kB] Get: 131 http://deb.debian.org/debian bookworm/main amd64 libavif15 amd64 0.11.1-1 [93.8 kB] Get: 132 http://deb.debian.org/debian bookworm/main amd64 libde265-0 amd64 1.0.11-1 [185 kB] Get: 133 http://deb.debian.org/debian bookworm/main amd64 libnuma1 amd64 2.0.16-1 [21.0 kB] Get: 134 http://deb.debian.org/debian bookworm/main amd64 libx265-199 amd64 3.5-2+b1 [1150 kB] Get: 135 http://deb.debian.org/debian bookworm/main amd64 libheif1 amd64 1.15.1-1 [215 kB] Get: 136 http://deb.debian.org/debian bookworm/main amd64 libxpm4 amd64 1:3.5.12-1.1 [48.4 kB] Get: 137 http://deb.debian.org/debian bookworm/main amd64 libgd3 amd64 2.3.3-9 [124 kB] Get: 138 http://deb.debian.org/debian bookworm/main amd64 liblua5.4-0 amd64 5.4.4-3 [137 kB] Get: 139 http://deb.debian.org/debian bookworm/main amd64 fontconfig amd64 2.14.1-4 [449 kB] Get: 140 http://deb.debian.org/debian bookworm/main amd64 libfribidi0 amd64 1.0.8-2.1 [65.0 kB] Get: 141 http://deb.debian.org/debian bookworm/main amd64 libthai-data all 0.1.29-1 [176 kB] Get: 142 http://deb.debian.org/debian bookworm/main amd64 libdatrie1 amd64 0.2.13-2+b1 [43.3 kB] Get: 143 http://deb.debian.org/debian bookworm/main amd64 libthai0 amd64 0.1.29-1 [57.5 kB] Get: 144 http://deb.debian.org/debian bookworm/main amd64 libpango-1.0-0 amd64 1.50.12+ds-1 [212 kB] Get: 145 http://deb.debian.org/debian bookworm/main amd64 libpangoft2-1.0-0 amd64 1.50.12+ds-1 [47.4 kB] Get: 146 http://deb.debian.org/debian bookworm/main amd64 libpangocairo-1.0-0 amd64 1.50.12+ds-1 [34.2 kB] Get: 147 http://deb.debian.org/debian bookworm/main amd64 libdouble-conversion3 amd64 3.2.1-1 [41.5 kB] Get: 148 http://deb.debian.org/debian bookworm/main amd64 libpcre2-16-0 amd64 10.42-1 [245 kB] Get: 149 http://deb.debian.org/debian bookworm/main amd64 libqt5core5a amd64 5.15.8+dfsg-7 [1809 kB] Get: 150 http://deb.debian.org/debian bookworm/main amd64 libdrm-common all 2.4.114-1 [7112 B] Get: 151 http://deb.debian.org/debian bookworm/main amd64 libdrm2 amd64 2.4.114-1+b1 [37.5 kB] Get: 152 http://deb.debian.org/debian bookworm/main amd64 libglvnd0 amd64 1.6.0-1 [51.8 kB] Get: 153 http://deb.debian.org/debian bookworm/main amd64 libwayland-server0 amd64 1.21.0-1 [35.9 kB] Get: 154 http://deb.debian.org/debian bookworm/main amd64 libgbm1 amd64 22.3.6-1+deb12u1 [38.0 kB] Get: 155 http://deb.debian.org/debian bookworm/main amd64 libglapi-mesa amd64 22.3.6-1+deb12u1 [35.7 kB] Get: 156 http://deb.debian.org/debian bookworm/main amd64 libwayland-client0 amd64 1.21.0-1 [28.3 kB] Get: 157 http://deb.debian.org/debian bookworm/main amd64 libx11-xcb1 amd64 2:1.8.4-2 [192 kB] Get: 158 http://deb.debian.org/debian bookworm/main amd64 libxcb-dri2-0 amd64 1.15-1 [107 kB] Get: 159 http://deb.debian.org/debian bookworm/main amd64 libxcb-dri3-0 amd64 1.15-1 [107 kB] Get: 160 http://deb.debian.org/debian bookworm/main amd64 libxcb-present0 amd64 1.15-1 [105 kB] Get: 161 http://deb.debian.org/debian bookworm/main amd64 libxcb-randr0 amd64 1.15-1 [117 kB] Get: 162 http://deb.debian.org/debian bookworm/main amd64 libxcb-sync1 amd64 1.15-1 [109 kB] Get: 163 http://deb.debian.org/debian bookworm/main amd64 libxcb-xfixes0 amd64 1.15-1 [109 kB] Get: 164 http://deb.debian.org/debian bookworm/main amd64 libxshmfence1 amd64 1.3-1 [8820 B] Get: 165 http://deb.debian.org/debian bookworm/main amd64 libegl-mesa0 amd64 22.3.6-1+deb12u1 [114 kB] Get: 166 http://deb.debian.org/debian bookworm/main amd64 libegl1 amd64 1.6.0-1 [33.7 kB] Get: 167 http://deb.debian.org/debian bookworm/main amd64 libxcb-glx0 amd64 1.15-1 [122 kB] Get: 168 http://deb.debian.org/debian bookworm/main amd64 libxfixes3 amd64 1:6.0.0-2 [22.7 kB] Get: 169 http://deb.debian.org/debian bookworm/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get: 170 http://deb.debian.org/debian bookworm/main amd64 libdrm-amdgpu1 amd64 2.4.114-1+b1 [20.9 kB] Get: 171 http://deb.debian.org/debian bookworm/main amd64 libpciaccess0 amd64 0.17-2 [51.4 kB] Get: 172 http://deb.debian.org/debian bookworm/main amd64 libdrm-intel1 amd64 2.4.114-1+b1 [64.0 kB] Get: 173 http://deb.debian.org/debian bookworm/main amd64 libdrm-nouveau2 amd64 2.4.114-1+b1 [19.1 kB] Get: 174 http://deb.debian.org/debian bookworm/main amd64 libdrm-radeon1 amd64 2.4.114-1+b1 [21.8 kB] Get: 175 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 176 http://deb.debian.org/debian bookworm/main amd64 libz3-4 amd64 4.8.12-3.1 [7216 kB] Get: 177 http://deb.debian.org/debian bookworm/main amd64 libllvm15 amd64 1:15.0.6-4+b1 [23.1 MB] Get: 178 http://deb.debian.org/debian bookworm/main amd64 libsensors-config all 1:3.6.0-7.1 [14.3 kB] Get: 179 http://deb.debian.org/debian bookworm/main amd64 libsensors5 amd64 1:3.6.0-7.1 [34.2 kB] Get: 180 http://deb.debian.org/debian bookworm/main amd64 libgl1-mesa-dri amd64 22.3.6-1+deb12u1 [7239 kB] Get: 181 http://deb.debian.org/debian bookworm/main amd64 libglx-mesa0 amd64 22.3.6-1+deb12u1 [147 kB] Get: 182 http://deb.debian.org/debian bookworm/main amd64 libglx0 amd64 1.6.0-1 [34.4 kB] Get: 183 http://deb.debian.org/debian bookworm/main amd64 libgl1 amd64 1.6.0-1 [88.4 kB] Get: 184 http://deb.debian.org/debian bookworm/main amd64 x11-common all 1:7.7+23 [252 kB] Get: 185 http://deb.debian.org/debian bookworm/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Get: 186 http://deb.debian.org/debian bookworm/main amd64 libevdev2 amd64 1.13.0+dfsg-1 [34.0 kB] Get: 187 http://deb.debian.org/debian bookworm/main amd64 libmtdev1 amd64 1.1.6-1 [23.0 kB] Get: 188 http://deb.debian.org/debian bookworm/main amd64 libgudev-1.0-0 amd64 237-2 [15.1 kB] Get: 189 http://deb.debian.org/debian bookworm/main amd64 libwacom-common all 2.6.0-1 [58.4 kB] Get: 190 http://deb.debian.org/debian bookworm/main amd64 libwacom9 amd64 2.6.0-1 [21.5 kB] Get: 191 http://deb.debian.org/debian bookworm/main amd64 libinput-bin amd64 1.22.1-1 [23.2 kB] Get: 192 http://deb.debian.org/debian bookworm/main amd64 libinput10 amd64 1.22.1-1 [125 kB] Get: 193 http://deb.debian.org/debian bookworm/main amd64 libmd4c0 amd64 0.4.8-1 [44.2 kB] Get: 194 http://deb.debian.org/debian bookworm/main amd64 libqt5dbus5 amd64 5.15.8+dfsg-7 [211 kB] Get: 195 http://deb.debian.org/debian bookworm/main amd64 libqt5network5 amd64 5.15.8+dfsg-7 [674 kB] Get: 196 http://deb.debian.org/debian bookworm/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get: 197 http://deb.debian.org/debian bookworm/main amd64 libxcb-icccm4 amd64 0.4.1-1.1 [27.4 kB] Get: 198 http://deb.debian.org/debian bookworm/main amd64 libxcb-util1 amd64 0.4.0-1+b1 [23.2 kB] Get: 199 http://deb.debian.org/debian bookworm/main amd64 libxcb-image0 amd64 0.4.0-2 [22.9 kB] Get: 200 http://deb.debian.org/debian bookworm/main amd64 libxcb-keysyms1 amd64 0.4.0-1+b2 [16.4 kB] Get: 201 http://deb.debian.org/debian bookworm/main amd64 libxcb-render-util0 amd64 0.3.9-1+b1 [18.3 kB] Get: 202 http://deb.debian.org/debian bookworm/main amd64 libxcb-shape0 amd64 1.15-1 [106 kB] Get: 203 http://deb.debian.org/debian bookworm/main amd64 libxcb-xinerama0 amd64 1.15-1 [105 kB] Get: 204 http://deb.debian.org/debian bookworm/main amd64 libxcb-xinput0 amd64 1.15-1 [130 kB] Get: 205 http://deb.debian.org/debian bookworm/main amd64 libxcb-xkb1 amd64 1.15-1 [129 kB] Get: 206 http://deb.debian.org/debian bookworm/main amd64 xkb-data all 2.35.1-1 [764 kB] Get: 207 http://deb.debian.org/debian bookworm/main amd64 libxkbcommon0 amd64 1.5.0-1 [106 kB] Get: 208 http://deb.debian.org/debian bookworm/main amd64 libxkbcommon-x11-0 amd64 1.5.0-1 [15.6 kB] Get: 209 http://deb.debian.org/debian bookworm/main amd64 libqt5gui5 amd64 5.15.8+dfsg-7 [3407 kB] Get: 210 http://deb.debian.org/debian bookworm/main amd64 libqt5widgets5 amd64 5.15.8+dfsg-7 [2379 kB] Get: 211 http://deb.debian.org/debian bookworm/main amd64 libqt5printsupport5 amd64 5.15.8+dfsg-7 [202 kB] Get: 212 http://deb.debian.org/debian bookworm/main amd64 libqt5svg5 amd64 5.15.8-2 [134 kB] Get: 213 http://deb.debian.org/debian bookworm/main amd64 libpcre2-32-0 amd64 10.42-1 [234 kB] Get: 214 http://deb.debian.org/debian bookworm/main amd64 libwxbase3.2-1 amd64 3.2.2+dfsg-2 [948 kB] Get: 215 http://deb.debian.org/debian bookworm/main amd64 libatk1.0-0 amd64 2.46.0-5 [49.6 kB] Get: 216 http://deb.debian.org/debian bookworm/main amd64 libxi6 amd64 2:1.8-1+b1 [84.2 kB] Get: 217 http://deb.debian.org/debian bookworm/main amd64 libatspi2.0-0 amd64 2.46.0-5 [75.4 kB] Get: 218 http://deb.debian.org/debian bookworm/main amd64 libatk-bridge2.0-0 amd64 2.46.0-5 [64.6 kB] Get: 219 http://deb.debian.org/debian bookworm/main amd64 libcairo-gobject2 amd64 1.16.0-7 [112 kB] Get: 220 http://deb.debian.org/debian bookworm/main amd64 libcolord2 amd64 1.4.6-2.2 [137 kB] Get: 221 http://deb.debian.org/debian bookworm/main amd64 libepoxy0 amd64 1.5.10-1 [189 kB] Get: 222 http://deb.debian.org/debian bookworm/main amd64 libwayland-cursor0 amd64 1.21.0-1 [14.4 kB] Get: 223 http://deb.debian.org/debian bookworm/main amd64 libwayland-egl1 amd64 1.21.0-1 [8640 B] Get: 224 http://deb.debian.org/debian bookworm/main amd64 libxcomposite1 amd64 1:0.4.5-1 [16.6 kB] Get: 225 http://deb.debian.org/debian bookworm/main amd64 libxcursor1 amd64 1:1.2.1-1 [40.9 kB] Get: 226 http://deb.debian.org/debian bookworm/main amd64 libxdamage1 amd64 1:1.1.6-1 [15.1 kB] Get: 227 http://deb.debian.org/debian bookworm/main amd64 libxinerama1 amd64 2:1.1.4-3 [17.8 kB] Get: 228 http://deb.debian.org/debian bookworm/main amd64 libxrandr2 amd64 2:1.5.2-2+b1 [39.2 kB] Get: 229 http://deb.debian.org/debian bookworm/main amd64 dbus-user-session amd64 1.14.6-1 [76.5 kB] Get: 230 http://deb.debian.org/debian bookworm/main amd64 libdconf1 amd64 0.40.0-4 [40.9 kB] Get: 231 http://deb.debian.org/debian bookworm/main amd64 dconf-service amd64 0.40.0-4 [31.6 kB] Get: 232 http://deb.debian.org/debian bookworm/main amd64 dconf-gsettings-backend amd64 0.40.0-4 [27.8 kB] Get: 233 http://deb.debian.org/debian bookworm/main amd64 libgtk-3-common all 3.24.37-2 [3891 kB] Get: 234 http://deb.debian.org/debian bookworm/main amd64 libgtk-3-0 amd64 3.24.37-2 [2845 kB] Get: 235 http://deb.debian.org/debian bookworm/main amd64 libnotify4 amd64 0.8.1-1 [30.1 kB] Get: 236 http://deb.debian.org/debian bookworm/main amd64 libxtst6 amd64 2:1.2.3-1.1 [28.0 kB] Get: 237 http://deb.debian.org/debian bookworm/main amd64 libwxgtk3.2-1 amd64 3.2.2+dfsg-2 [4504 kB] Get: 238 http://deb.debian.org/debian bookworm/main amd64 gnuplot-qt amd64 5.4.4+dfsg1-2+b2 [1074 kB] Get: 239 http://deb.debian.org/debian bookworm/main amd64 gnuplot all 5.4.4+dfsg1-2 [5844 B] Get: 240 http://deb.debian.org/debian bookworm/main amd64 canu amd64 2.0+dfsg-2+b1 [1211 kB] Get: 241 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 242 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 243 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 244 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 245 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 246 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 247 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 248 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 249 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 250 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 251 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 252 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 253 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get: 254 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-3 [131 kB] Get: 255 http://deb.debian.org/debian bookworm/main amd64 dh-python all 5.20230130 [104 kB] Get: 256 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 257 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get: 258 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get: 259 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB] Get: 260 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1 [72.3 kB] Get: 261 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB] Get: 262 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 263 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get: 264 http://deb.debian.org/debian bookworm/main amd64 libcurl3-gnutls amd64 7.88.1-9 [381 kB] Get: 265 http://deb.debian.org/debian bookworm/main amd64 libhtscodecs2 amd64 1.3.0-4 [87.5 kB] Get: 266 http://deb.debian.org/debian bookworm/main amd64 libhts3 amd64 1.16+ds-3 [430 kB] Get: 267 http://deb.debian.org/debian bookworm/main amd64 libncurses6 amd64 6.4-4 [103 kB] Get: 268 http://deb.debian.org/debian bookworm/main amd64 samtools amd64 1.16.1-1 [607 kB] Get: 269 http://deb.debian.org/debian bookworm/main amd64 fastaq all 3.17.0-5 [48.2 kB] Get: 270 http://deb.debian.org/debian bookworm/main amd64 libnlopt0 amd64 2.7.1-4+b4 [174 kB] Get: 271 http://deb.debian.org/debian bookworm/main amd64 libssw0 amd64 1.1-13 [19.7 kB] Get: 272 http://deb.debian.org/debian bookworm/main amd64 libxslt1.1 amd64 1.1.35-1 [242 kB] Get: 273 http://deb.debian.org/debian bookworm/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get: 274 http://deb.debian.org/debian bookworm/main amd64 mummer amd64 3.23+dfsg-8 [662 kB] Get: 275 http://deb.debian.org/debian bookworm/main amd64 prodigal amd64 1:2.6.3-6 [508 kB] Get: 276 http://deb.debian.org/debian bookworm/main amd64 python3-all amd64 3.11.2-1+b1 [1056 B] Get: 277 http://deb.debian.org/debian bookworm/main amd64 python3-attr all 22.2.0-1 [65.4 kB] Get: 278 http://deb.debian.org/debian bookworm/main amd64 python3-et-xmlfile all 1.0.1-2.1 [9180 B] Get: 279 http://deb.debian.org/debian bookworm/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 280 http://deb.debian.org/debian bookworm/main amd64 python3-jdcal all 1.0-1.3 [7904 B] Get: 281 http://deb.debian.org/debian bookworm/main amd64 python3-joblib all 1.2.0-4 [211 kB] Get: 282 http://deb.debian.org/debian bookworm/main amd64 python3-lxml amd64 4.9.2-1+b1 [1194 kB] Get: 283 http://deb.debian.org/debian bookworm/main amd64 python3-more-itertools all 8.10.0-2 [53.0 kB] Get: 284 http://deb.debian.org/debian bookworm/main amd64 python3-openpyxl all 3.0.9-1 [161 kB] Get: 285 http://deb.debian.org/debian bookworm/main amd64 python3-packaging all 23.0-1 [32.5 kB] Get: 286 http://deb.debian.org/debian bookworm/main amd64 python3-pluggy all 1.0.0+repack-1 [19.7 kB] Get: 287 http://deb.debian.org/debian bookworm/main amd64 python3-py all 1.11.0-1 [89.2 kB] Get: 288 http://deb.debian.org/debian bookworm/main amd64 python3-pymummer all 0.11.0-3 [11.4 kB] Get: 289 http://deb.debian.org/debian bookworm/main amd64 python3-pysam amd64 0.20.0+ds-3+b1 [1681 kB] Get: 290 http://deb.debian.org/debian bookworm/main amd64 python3-pytest all 7.2.1-2 [236 kB] Get: 291 http://deb.debian.org/debian bookworm/main amd64 python3-setuptools all 66.1.1-1 [521 kB] Get: 292 http://deb.debian.org/debian bookworm/main amd64 python3-yaml amd64 6.0-3+b2 [119 kB] Get: 293 http://deb.debian.org/debian bookworm/main amd64 spades amd64 3.15.5+dfsg-2 [8663 kB] Fetched 214 MB in 6s (34.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libargon2-1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../00-libargon2-1_0~20171227-0.3+deb12u1_amd64.deb ... Unpacking libargon2-1:amd64 (0~20171227-0.3+deb12u1) ... Selecting previously unselected package dmsetup. Preparing to unpack .../01-dmsetup_2%3a1.02.185-2_amd64.deb ... Unpacking dmsetup (2:1.02.185-2) ... Selecting previously unselected package libdevmapper1.02.1:amd64. Preparing to unpack .../02-libdevmapper1.02.1_2%3a1.02.185-2_amd64.deb ... Unpacking libdevmapper1.02.1:amd64 (2:1.02.185-2) ... Selecting previously unselected package libjson-c5:amd64. Preparing to unpack .../03-libjson-c5_0.16-2_amd64.deb ... Unpacking libjson-c5:amd64 (0.16-2) ... Selecting previously unselected package libcryptsetup12:amd64. Preparing to unpack .../04-libcryptsetup12_2%3a2.6.1-4~deb12u1_amd64.deb ... Unpacking libcryptsetup12:amd64 (2:2.6.1-4~deb12u1) ... Selecting previously unselected package libfdisk1:amd64. Preparing to unpack .../05-libfdisk1_2.38.1-5+b1_amd64.deb ... Unpacking libfdisk1:amd64 (2.38.1-5+b1) ... Selecting previously unselected package libkmod2:amd64. Preparing to unpack .../06-libkmod2_30+20221128-1_amd64.deb ... Unpacking libkmod2:amd64 (30+20221128-1) ... Selecting previously unselected package libapparmor1:amd64. Preparing to unpack .../07-libapparmor1_3.0.8-3_amd64.deb ... Unpacking libapparmor1:amd64 (3.0.8-3) ... Selecting previously unselected package libip4tc2:amd64. Preparing to unpack .../08-libip4tc2_1.8.9-2_amd64.deb ... Unpacking libip4tc2:amd64 (1.8.9-2) ... Selecting previously unselected package libsystemd-shared:amd64. Preparing to unpack .../09-libsystemd-shared_252.6-1_amd64.deb ... Unpacking libsystemd-shared:amd64 (252.6-1) ... Selecting previously unselected package systemd. Preparing to unpack .../10-systemd_252.6-1_amd64.deb ... Unpacking systemd (252.6-1) ... Setting up libargon2-1:amd64 (0~20171227-0.3+deb12u1) ... Setting up libjson-c5:amd64 (0.16-2) ... Setting up libfdisk1:amd64 (2.38.1-5+b1) ... Setting up libkmod2:amd64 (30+20221128-1) ... Setting up libapparmor1:amd64 (3.0.8-3) ... Setting up libip4tc2:amd64 (1.8.9-2) ... Setting up libsystemd-shared:amd64 (252.6-1) ... Setting up libdevmapper1.02.1:amd64 (2:1.02.185-2) ... Setting up libcryptsetup12:amd64 (2:2.6.1-4~deb12u1) ... Setting up systemd (252.6-1) ... Created symlink /etc/systemd/system/getty.target.wants/getty@tty1.service -> /lib/systemd/system/getty@.service. Created symlink /etc/systemd/system/multi-user.target.wants/remote-fs.target -> /lib/systemd/system/remote-fs.target. Created symlink /etc/systemd/system/sysinit.target.wants/systemd-pstore.service -> /lib/systemd/system/systemd-pstore.service. Initializing machine ID from random generator. Creating group 'systemd-journal' with GID 999. Creating group 'systemd-network' with GID 998. Creating user 'systemd-network' (systemd Network Management) with UID 998 and GID 998. Setting up dmsetup (2:1.02.185-2) ... Selecting previously unselected package systemd-sysv. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20513 files and directories currently installed.) Preparing to unpack .../00-systemd-sysv_252.6-1_amd64.deb ... Unpacking systemd-sysv (252.6-1) ... Selecting previously unselected package libdbus-1-3:amd64. Preparing to unpack .../01-libdbus-1-3_1.14.6-1_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.14.6-1) ... Selecting previously unselected package dbus-bin. Preparing to unpack .../02-dbus-bin_1.14.6-1_amd64.deb ... Unpacking dbus-bin (1.14.6-1) ... Selecting previously unselected package dbus-session-bus-common. Preparing to unpack .../03-dbus-session-bus-common_1.14.6-1_all.deb ... Unpacking dbus-session-bus-common (1.14.6-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../04-libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package dbus-daemon. Preparing to unpack .../05-dbus-daemon_1.14.6-1_amd64.deb ... Unpacking dbus-daemon (1.14.6-1) ... Selecting previously unselected package dbus-system-bus-common. Preparing to unpack .../06-dbus-system-bus-common_1.14.6-1_all.deb ... Unpacking dbus-system-bus-common (1.14.6-1) ... Selecting previously unselected package dbus. Preparing to unpack .../07-dbus_1.14.6-1_amd64.deb ... Unpacking dbus (1.14.6-1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.7-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-1) ... Selecting previously unselected package binfmt-support. Preparing to unpack .../09-binfmt-support_2.2.2-2_amd64.deb ... Unpacking binfmt-support (2.2.2-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../10-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../11-libreadline8_8.2-1.3_amd64.deb ... Unpacking libreadline8:amd64 (8.2-1.3) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../12-libsigsegv2_2.14-1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.14-1) ... Setting up readline-common (8.2-1.3) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up libsigsegv2:amd64 (2.14-1) ... Selecting previously unselected package gawk. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20670 files and directories currently installed.) Preparing to unpack .../gawk_1%3a5.2.1-2_amd64.deb ... Unpacking gawk (1:5.2.1-2) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../libpython3.11-minimal_3.11.2-6_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.2-6) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_amd64.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:amd64 (3.11.2-6) ... Setting up libexpat1:amd64 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21163 files and directories currently installed.) Preparing to unpack .../python3-minimal_3.11.2-1+b1_amd64.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../libpython3.11-stdlib_3.11.2-6_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../python3.11_3.11.2-6_amd64.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../libpython3-stdlib_3.11.2-1+b1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21573 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.2-1+b1_amd64.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../001-libproc2-0_2%3a4.0.2-3_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.2-3) ... Selecting previously unselected package procps. Preparing to unpack .../002-procps_2%3a4.0.2-3_amd64.deb ... Unpacking procps (2:4.0.2-3) ... 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Preparing to unpack .../260-spades_3.15.5+dfsg-2_amd64.deb ... Unpacking spades (3.15.5+dfsg-2) ... Setting up libhtscodecs2:amd64 (1.3.0-4) ... Setting up media-types (10.0.0) ... Setting up libpipeline1:amd64 (1.5.7-1) ... Setting up fastjar (2:0.98-7) ... Setting up libgraphite2-3:amd64 (1.3.14-1) ... Setting up liblcms2-2:amd64 (2.14-2) ... Setting up libpixman-1-0:amd64 (0.42.2-1) ... Setting up libfastutil-java (8.5.11+dfsg-1) ... Setting up libwayland-server0:amd64 (1.21.0-1) ... Setting up libaom3:amd64 (3.6.0-1) ... Setting up libpciaccess0:amd64 (0.17-2) ... Setting up libabsl20220623:amd64 (20220623.1-1) ... Setting up systemd-sysv (252.6-1) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up libdouble-conversion3:amd64 (3.2.1-1) ... Setting up libpsl5:amd64 (0.21.2-1) ... Setting up libicu72:amd64 (72.1-3) ... Setting up liblerc4:amd64 (4.0.0+ds-2) ... Setting up libjsr305-java (0.1~+svn49-11) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up hicolor-icon-theme (0.17-2) ... Setting up java-common (0.74) ... Setting up libdatrie1:amd64 (0.2.13-2+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up gawk (1:5.2.1-2) ... Setting up prodigal (1:2.6.3-6) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:amd64 (0.2.5-1) ... Setting up libglib2.0-0:amd64 (2.74.6-2) ... Setting up bwa (0.7.17-7+b2) ... Setting up libglvnd0:amd64 (1.6.0-1) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libbrotli1:amd64 (1.0.9-2+b6) ... Setting up libfilesys-df-perl (0.92-7+b1) ... Setting up libgdk-pixbuf2.0-common (2.42.10+dfsg-1) ... Setting up x11-common (1:7.7+23) ... Running in chroot, ignoring request. Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libsensors-config (1:3.6.0-7.1) ... Setting up libnghttp2-14:amd64 (1.52.0-1) ... Setting up libmagic1:amd64 (1:5.44-3) ... Setting up libdeflate0:amd64 (1.14-1) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up xkb-data (2.35.1-1) ... Setting up libnlopt0:amd64 (2.7.1-4+b4) ... Setting up file (1:5.44-3) ... Setting up libsvtav1enc1:amd64 (1.4.1+dfsg-1) ... Setting up libjbig0:amd64 (2.1-6.1) ... Setting up librav1e0:amd64 (0.5.1-6) ... Setting up libpcre2-16-0:amd64 (10.42-1) ... Setting up libcolord2:amd64 (1.4.6-2.2) ... Setting up libssw-java (1.1-13) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Setting up libdconf1:amd64 (0.40.0-4) ... Setting up libasound2-data (1.2.8-1) ... Setting up autotools-dev (20220109.1) ... Setting up libz3-4:amd64 (4.8.12-3.1) ... Setting up libpcre2-32-0:amd64 (10.42-1) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-2) ... Setting up libx11-data (2:1.8.4-2) ... Setting up libepoxy0:amd64 (1.5.10-1) ... Setting up libnspr4:amd64 (2:4.35-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up aglfn (1.7+git20191031.4036a9c-2) ... Setting up libapache-pom-java (29-2) ... Setting up libavahi-common-data:amd64 (0.8-10) ... Setting up libncurses6:amd64 (6.4-4) ... Setting up libatinject-jsr330-api-java (1.0+ds1-5) ... Setting up libdbus-1-3:amd64 (1.14.6-1) ... Setting up libfribidi0:amd64 (1.0.8-2.1) ... Setting up libproc2-0:amd64 (2:4.0.2-3) ... Setting up libpng16-16:amd64 (1.6.39-2) ... Setting up autopoint (0.21-12) ... Setting up binfmt-support (2.2.2-2) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Created symlink /etc/systemd/system/multi-user.target.wants/binfmt-support.service -> /lib/systemd/system/binfmt-support.service. Setting up libjsoncpp25:amd64 (1.9.5-4) ... Setting up fonts-dejavu-core (2.37-6) ... Setting up libgav1-1:amd64 (0.18.0-1+b1) ... Setting up libpcsclite1:amd64 (1.9.9-2) ... Setting up libsensors5:amd64 (1:3.6.0-7.1) ... Setting up libbamtools2.5.2:amd64 (2.5.2+dfsg-4) ... Setting up libdav1d6:amd64 (1.0.0-2) ... Setting up libglapi-mesa:amd64 (22.3.6-1+deb12u1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg-10) ... Setting up libmtdev1:amd64 (1.1.6-1) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:amd64 (1.2.4-0.1) ... Setting up libnuma1:amd64 (2.0.16-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libxshmfence1:amd64 (1.3-1) ... Setting up at-spi2-common (2.46.0-5) ... Setting up libtiff6:amd64 (4.5.0-5) ... Setting up bamtools (2.5.2+dfsg-4) ... Setting up dbus-session-bus-common (1.14.6-1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up procps (2:4.0.2-3) ... Setting up libasound2:amd64 (1.2.8-1+b1) ... Setting up mummer (3.23+dfsg-8) ... Setting up libmd4c0:amd64 (0.4.8-1) ... Setting up liblua5.4-0:amd64 (5.4.4-3) ... Setting up libsub-override-perl (0.09-4) ... Setting up libthai-data (0.1.29-1) ... Setting up libssh2-1:amd64 (1.10.0-3+b1) ... Setting up libatk1.0-0:amd64 (2.46.0-5) ... Setting up libwayland-egl1:amd64 (1.21.0-1) ... Setting up dbus-system-bus-common (1.14.6-1) ... Setting up libde265-0:amd64 (1.0.11-1) ... Setting up openssl (3.0.8-1) ... Setting up libbsd0:amd64 (0.11.7-2) ... Setting up libdrm-common (2.4.114-1) ... Setting up libyuv0:amd64 (0.0~git20230123.b2528b0-1) ... Setting up libelf1:amd64 (0.188-2.1) ... Setting up libssw0:amd64 (1.1-13) ... Setting up libevdev2:amd64 (1.13.0+dfsg-1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.2) ... Setting up dbus-bin (1.14.6-1) ... Setting up libgudev-1.0-0:amd64 (237-2) ... Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up libwacom-common (2.6.0-1) ... Setting up libxkbcommon0:amd64 (1.5.0-1) ... Setting up libwayland-client0:amd64 (1.21.0-1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gnuplot-data (5.4.4+dfsg1-2) ... Setting up python3.11 (3.11.2-6) ... Setting up libice6:amd64 (2:1.0.10-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxcb1:amd64 (1.15-1) ... Setting up gettext (0.21-12) ... Setting up libxcb-xfixes0:amd64 (1.15-1) ... Setting up libavif15:amd64 (0.11.1-1) ... Setting up libxcb-xinput0:amd64 (1.15-1) ... Setting up jarwrapper (0.78) ... Setting up libtool (2.4.7-5) ... Setting up libxcb-render0:amd64 (1.15-1) ... Setting up libwacom9:amd64 (2.6.0-1) ... Setting up fontconfig-config (2.14.1-4) ... Setting up libxcb-glx0:amd64 (1.15-1) ... Setting up libedit2:amd64 (3.1-20221030-2) ... Setting up libcommons-parent-java (56-1) ... Setting up libxcb-keysyms1:amd64 (0.4.0-1+b2) ... Setting up libxcb-shape0:amd64 (1.15-1) ... Setting up libavahi-common3:amd64 (0.8-10) ... Setting up libxcb-render-util0:amd64 (0.3.9-1+b1) ... Setting up python3 (3.11.2-1+b1) ... Setting up libnss3:amd64 (2:3.87.1-1) ... Setting up libxcb-shm0:amd64 (1.15-1) ... Setting up libxcb-icccm4:amd64 (0.4.1-1.1) ... Setting up dbus-daemon (1.14.6-1) ... Setting up libwxbase3.2-1:amd64 (3.2.2+dfsg-2) ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Setting up libxcb-util1:amd64 (0.4.0-1+b1) ... Setting up libinput-bin (1.22.1-1) ... Setting up libxcb-xkb1:amd64 (1.15-1) ... Setting up libxcb-image0:amd64 (0.4.0-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libxcb-present0:amd64 (1.15-1) ... Setting up dh-autoreconf (20) ... Setting up libthai0:amd64 (0.1.29-1) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up python3-packaging (23.0-1) ... Setting up libxcb-xinerama0:amd64 (1.15-1) ... Setting up libfreetype6:amd64 (2.12.1+dfsg-5) ... Setting up libxcb-sync1:amd64 (1.15-1) ... Setting up dbus (1.14.6-1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up shared-mime-info (2.2-1) ... Setting up libxkbcommon-x11-0:amd64 (1.5.0-1) ... Setting up libqt5core5a:amd64 (5.15.8+dfsg-7) ... Setting up python3-pluggy (1.0.0+repack-1) ... Setting up libx265-199:amd64 (3.5-2+b1) ... Setting up libxcb-dri2-0:amd64 (1.15-1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up libdrm2:amd64 (2.4.114-1+b1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up libqt5dbus5:amd64 (5.15.8+dfsg-7) ... Setting up libwayland-cursor0:amd64 (1.21.0-1) ... Setting up libxcb-randr0:amd64 (1.15-1) ... Setting up libllvm15:amd64 (1:15.0.6-4+b1) ... Setting up libxslt1.1:amd64 (1.1.35-1) ... Setting up python3-et-xmlfile (1.0.1-2.1) ... Setting up libpam-systemd:amd64 (252.6-1) ... Setting up libx11-6:amd64 (2:1.8.4-2) ... Setting up libharfbuzz0b:amd64 (6.0.0+dfsg-3) ... Setting up libgdk-pixbuf-2.0-0:amd64 (2.42.10+dfsg-1+b1) ... Setting up libfontconfig1:amd64 (2.14.1-4) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up libxcomposite1:amd64 (1:0.4.5-1) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libavahi-client3:amd64 (0.8-10) ... Setting up libdrm-amdgpu1:amd64 (2.4.114-1+b1) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-3) ... Setting up dh-python (5.20230130) ... Setting up python3-more-itertools (8.10.0-2) ... Setting up libxcb-dri3-0:amd64 (1.15-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up libinput10:amd64 (1.22.1-1) ... Setting up python3-attr (22.2.0-1) ... Setting up gtk-update-icon-cache (3.24.37-2) ... Setting up libx11-xcb1:amd64 (2:1.8.4-2) ... Setting up fontconfig (2.14.1-4) ... Regenerating fonts cache... done. Setting up libdrm-nouveau2:amd64 (2.4.114-1+b1) ... Setting up libxdamage1:amd64 (1:1.1.6-1) ... Setting up python3-setuptools (66.1.1-1) ... Setting up libxpm4:amd64 (1:3.5.12-1.1) ... Setting up libxrender1:amd64 (1:0.9.10-1.1) ... Setting up python3-py (1.11.0-1) ... Setting up libcommons-compress-java (1.22-1) ... Setting up python3-jdcal (1.0-1.3) ... Setting up python3-joblib (1.2.0-4) ... Setting up libgbm1:amd64 (22.3.6-1+deb12u1) ... Setting up libdrm-radeon1:amd64 (2.4.114-1+b1) ... Setting up python3-pytest (7.2.1-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpango-1.0-0:amd64 (1.50.12+ds-1) ... Setting up libdrm-intel1:amd64 (2.4.114-1+b1) ... Setting up libgl1-mesa-dri:amd64 (22.3.6-1+deb12u1) ... Setting up libheif1:amd64 (1.15.1-1) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up python3-all (3.11.2-1+b1) ... Setting up python3-yaml (6.0-3+b2) ... Setting up libcurl3-gnutls:amd64 (7.88.1-9) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer -> /lib/systemd/system/man-db.timer. Setting up libcairo2:amd64 (1.16.0-7) ... Setting up libqt5network5:amd64 (5.15.8+dfsg-7) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up dbus-user-session (1.14.6-1) ... Setting up libegl-mesa0:amd64 (22.3.6-1+deb12u1) ... Setting up adwaita-icon-theme (43-1) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up libxfixes3:amd64 (1:6.0.0-2) ... Setting up libnotify4:amd64 (0.8.1-1) ... Setting up libxinerama1:amd64 (2:1.1.4-3) ... Setting up libgd3:amd64 (2.3.3-9) ... Setting up libxrandr2:amd64 (2:1.5.2-2+b1) ... Setting up libcups2:amd64 (2.4.2-3) ... Setting up python3-lxml:amd64 (4.9.2-1+b1) ... Setting up libegl1:amd64 (1.6.0-1) ... Setting up libcairo-gobject2:amd64 (1.16.0-7) ... Setting up libpangoft2-1.0-0:amd64 (1.50.12+ds-1) ... Setting up libpangocairo-1.0-0:amd64 (1.50.12+ds-1) ... Setting up libhts3:amd64 (1.16+ds-3) ... Setting up libglx-mesa0:amd64 (22.3.6-1+deb12u1) ... Setting up python3-pysam (0.20.0+ds-3+b1) ... Setting up libxi6:amd64 (2:1.8-1+b1) ... Setting up libglx0:amd64 (1.6.0-1) ... Setting up libxtst6:amd64 (2:1.2.3-1.1) ... Setting up libxcursor1:amd64 (1:1.2.1-1) ... Setting up debhelper (13.11.4) ... Setting up dconf-service (0.40.0-4) ... Setting up libatspi2.0-0:amd64 (2.46.0-5) ... Setting up samtools (1.16.1-1) ... Setting up libatk-bridge2.0-0:amd64 (2.46.0-5) ... Setting up libgl1:amd64 (1.6.0-1) ... Setting up python3-openpyxl (3.0.9-1) ... Setting up spades (3.15.5+dfsg-2) ... Setting up dconf-gsettings-backend:amd64 (0.40.0-4) ... Setting up fastaq (3.17.0-5) ... Setting up libqt5gui5:amd64 (5.15.8+dfsg-7) ... Setting up libqt5widgets5:amd64 (5.15.8+dfsg-7) ... Setting up python3-pymummer (0.11.0-3) ... Setting up libqt5printsupport5:amd64 (5.15.8+dfsg-7) ... Setting up libgtk-3-common (3.24.37-2) ... Setting up libgtk-3-0:amd64 (3.24.37-2) ... Setting up libqt5svg5:amd64 (5.15.8-2) ... Setting up libwxgtk3.2-1:amd64 (3.2.2+dfsg-2) ... Setting up gnuplot-qt (5.4.4+dfsg1-2+b2) ... update-alternatives: using /usr/bin/gnuplot-qt to provide /usr/bin/gnuplot (gnuplot) in auto mode Setting up gnuplot (5.4.4+dfsg1-2) ... Setting up libguava-java (31.1-1) ... Setting up openjdk-17-jre-headless:amd64 (17.0.6+10-1) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up ca-certificates-java (20230103) ... Adding debian:ACCVRAIZ1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068_2.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certainly_Root_E1.pem Adding debian:Certainly_Root_R1.pem Adding debian:Certigna.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:D-TRUST_BR_Root_CA_1_2020.pem Adding debian:D-TRUST_EV_Root_CA_1_2020.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:E-Tugra_Global_Root_CA_ECC_v3.pem Adding debian:E-Tugra_Global_Root_CA_RSA_v3.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:GTS_Root_R1.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:HiPKI_Root_CA_-_G1.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:ISRG_Root_X1.pem Adding debian:ISRG_Root_X2.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Izenpe.com.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SecureTrust_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:Security_Communication_ECC_RootCA1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_RootCA3.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Telia_Root_CA_v2.pem Adding debian:TrustCor_ECA-1.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:TunTrust_Root_CA.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:vTrus_ECC_Root_CA.pem Adding debian:vTrus_Root_CA.pem done. Setting up liberror-prone-java (2.18.0-1) ... Setting up default-jre-headless (2:1.17-74) ... Setting up jaligner (1.0+dfsg-10) ... Setting up mhap (2.1.3+dfsg-3) ... Setting up canu (2.0+dfsg-2+b1) ... Processing triggers for libc-bin (2.36-9) ... Processing triggers for systemd (252.6-1) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for ca-certificates-java (20230103) ... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/circlator-1.5.6/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../circlator_1.5.6-7_source.changes dpkg-buildpackage: info: source package circlator dpkg-buildpackage: info: source version 1.5.6-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py clean running clean removing '/build/circlator-1.5.6/.pybuild/cpython3_3.11/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py build running build running build_py creating /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator copying circlator/external_progs.py -> /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator copying circlator/versions.py -> /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator copying circlator/start_fixer.py -> /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator copying circlator/program.py -> /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator copying circlator/minimus2.py -> /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator copying circlator/merge.py -> /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator copying circlator/mapping.py -> /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator copying circlator/dnaa.py -> /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator copying circlator/common.py -> /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator copying circlator/clean.py -> /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator copying circlator/bamfilter.py -> /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator copying circlator/assembly.py -> /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator copying circlator/assemble.py -> /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator copying circlator/__init__.py -> /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator creating /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/tasks copying circlator/tasks/version.py -> /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/tasks copying circlator/tasks/test.py -> /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/tasks copying circlator/tasks/progcheck.py -> /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/tasks copying circlator/tasks/minimus2.py -> /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/tasks copying circlator/tasks/merge.py -> /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/tasks copying circlator/tasks/mapreads.py -> /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/tasks copying circlator/tasks/get_dnaa.py -> /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/tasks copying circlator/tasks/fixstart.py -> /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/tasks copying circlator/tasks/clean.py -> /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/tasks copying circlator/tasks/bam2reads.py -> /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/tasks copying circlator/tasks/assemble.py -> /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/tasks copying circlator/tasks/all.py -> /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/tasks copying circlator/tasks/__init__.py -> /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/tasks creating /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/data copying circlator/data/test_ref.fa.fai -> /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/data copying circlator/data/test_ref.fa -> /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/data copying circlator/data/test_reads.fq.gz -> /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/data copying circlator/data/test_make_data.sh -> /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/data copying circlator/data/test_for_reads.fa -> /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/data copying circlator/data/test_contigs.fa -> /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/data copying circlator/data/dnaA.fasta -> /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/data running build_scripts creating build creating build/scripts-3.11 copying and adjusting scripts/circlator -> build/scripts-3.11 changing mode of build/scripts-3.11/circlator from 644 to 755 debian/rules override_dh_auto_test make[1]: Entering directory '/build/circlator-1.5.6' PYTHONPATH=/build/circlator-1.5.6 pytest-3 -v circlator/tests ============================= test session starts ============================== platform linux -- Python 3.11.2, pytest-7.2.1, pluggy-1.0.0+repack -- /usr/bin/python3 cachedir: .pytest_cache rootdir: /build/circlator-1.5.6 collecting ... collected 115 items circlator/tests/assemble_test.py::TestAssemble::test_build_spades_kmers PASSED [ 0%] circlator/tests/assemble_test.py::TestAssemble::test_make_canu_command PASSED [ 1%] circlator/tests/assemble_test.py::TestAssemble::test_make_spades_command PASSED [ 2%] circlator/tests/assemble_test.py::TestAssemble::test_rename_canu_contigs PASSED [ 3%] circlator/tests/assembly_test.py::TestAssembly::test_circular_contigs_from_canu_gfa PASSED [ 4%] circlator/tests/assembly_test.py::TestAssembly::test_circular_contigs_from_spades_after_3_6_1 PASSED [ 5%] circlator/tests/assembly_test.py::TestAssembly::test_circular_contigs_from_spades_before_3_6_1 PASSED [ 6%] circlator/tests/assembly_test.py::TestAssembly::test_circular_contigs_just_fasta PASSED [ 6%] circlator/tests/assembly_test.py::TestAssembly::test_circular_contigs_spades_post_3_6_1 PASSED [ 7%] circlator/tests/assembly_test.py::TestAssembly::test_circular_contigs_spades_pre_3_6_1 PASSED [ 8%] circlator/tests/assembly_test.py::TestAssembly::test_circular_edges_to_edge_numbers_dict PASSED [ 9%] circlator/tests/assembly_test.py::TestAssembly::test_get_contigs PASSED [ 10%] circlator/tests/assembly_test.py::TestAssembly::test_init_file_not_dir PASSED [ 11%] circlator/tests/assembly_test.py::TestAssembly::test_init_post_3_6_1_ok PASSED [ 12%] circlator/tests/assembly_test.py::TestAssembly::test_init_pre_3_6_1_ok PASSED [ 13%] circlator/tests/assembly_test.py::TestAssembly::test_init_raises_error PASSED [ 13%] circlator/tests/assembly_test.py::TestAssembly::test_spades_contigs_paths_to_dict PASSED [ 14%] circlator/tests/bamfilter_test.py::TestBamfilter::test_all_reads_from_contig PASSED [ 15%] circlator/tests/bamfilter_test.py::TestBamfilter::test_break_reads PASSED [ 16%] circlator/tests/bamfilter_test.py::TestBamfilter::test_check_contigs_to_use PASSED [ 17%] circlator/tests/bamfilter_test.py::TestBamfilter::test_exclude_region PASSED [ 18%] circlator/tests/bamfilter_test.py::TestBamfilter::test_get_all_unmapped_reads PASSED [ 19%] circlator/tests/bamfilter_test.py::TestBamfilter::test_get_contigs_to_use PASSED [ 20%] circlator/tests/bamfilter_test.py::TestBamfilter::test_get_ref_lengths PASSED [ 20%] circlator/tests/bamfilter_test.py::TestBamfilter::test_get_region_end PASSED [ 21%] circlator/tests/bamfilter_test.py::TestBamfilter::test_get_region_start PASSED [ 22%] circlator/tests/bamfilter_test.py::TestBamfilter::test_run_discard_unmapped_no_quals PASSED [ 23%] circlator/tests/bamfilter_test.py::TestBamfilter::test_run_keep_unmapped_no_quals PASSED [ 24%] circlator/tests/bamfilter_test.py::TestBamfilter::test_run_keep_unmapped_with_quals PASSED [ 25%] circlator/tests/clean_test.py::TestClean::test_clean_contigs PASSED [ 26%] circlator/tests/clean_test.py::TestClean::test_collapse_list_of_sets PASSED [ 26%] circlator/tests/clean_test.py::TestClean::test_containing_contigs PASSED [ 27%] circlator/tests/clean_test.py::TestClean::test_contains PASSED [ 28%] circlator/tests/clean_test.py::TestClean::test_expand_containing_using_transitivity PASSED [ 29%] circlator/tests/clean_test.py::TestClean::test_get_all_containing PASSED [ 30%] circlator/tests/clean_test.py::TestClean::test_get_containing_contigs PASSED [ 31%] circlator/tests/clean_test.py::TestClean::test_get_contigs_to_keep PASSED [ 32%] circlator/tests/clean_test.py::TestClean::test_get_identical_contigs PASSED [ 33%] circlator/tests/clean_test.py::TestClean::test_infinite_recursion PASSED [ 33%] circlator/tests/clean_test.py::TestClean::test_load_nucmer_hits PASSED [ 34%] circlator/tests/clean_test.py::TestClean::test_longest_contig PASSED [ 35%] circlator/tests/clean_test.py::TestClean::test_remove_identical_contigs PASSED [ 36%] circlator/tests/clean_test.py::TestClean::test_remove_small_contigs PASSED [ 37%] circlator/tests/clean_test.py::TestClean::test_write_log PASSED [ 38%] circlator/tests/common_test.py::TestCommon::test_check_files_exist PASSED [ 39%] circlator/tests/dnaa_test.py::TestDnaa::test_append_stop_to_seq PASSED [ 40%] circlator/tests/dnaa_test.py::TestDnaa::test_check_sequence PASSED [ 40%] circlator/tests/dnaa_test.py::TestDnaa::test_get_uniprot_url PASSED [ 41%] circlator/tests/dnaa_test.py::TestDnaa::test_header_matches_regex PASSED [ 42%] circlator/tests/dnaa_test.py::TestDnaa::test_header_to_genus_species PASSED [ 43%] circlator/tests/dnaa_test.py::TestDnaa::test_reverse_translate PASSED [ 44%] circlator/tests/external_progs_test.py::TestExternalProgs::test_bwa_version PASSED [ 45%] circlator/tests/external_progs_test.py::TestExternalProgs::test_canu_version PASSED [ 46%] circlator/tests/external_progs_test.py::TestExternalProgs::test_nucmer_version PASSED [ 46%] circlator/tests/external_progs_test.py::TestExternalProgs::test_prodigal_version PASSED [ 47%] circlator/tests/external_progs_test.py::TestExternalProgs::test_samtools_original_version PASSED [ 48%] circlator/tests/external_progs_test.py::TestExternalProgs::test_samtools_version PASSED [ 49%] circlator/tests/external_progs_test.py::TestExternalProgs::test_spades_version PASSED [ 50%] circlator/tests/mapping_test.py::TestMapping::test_aligned_read_to_read PASSED [ 51%] circlator/tests/mapping_test.py::TestMapping::test_bwa_index PASSED [ 52%] circlator/tests/mapping_test.py::TestMapping::test_bwa_index_clean PASSED [ 53%] circlator/tests/mapping_test.py::TestMapping::test_bwa_mem PASSED [ 53%] circlator/tests/merge_test.py::TestMerge::test_can_circularise PASSED [ 54%] circlator/tests/merge_test.py::TestMerge::test_contigs_dict_to_file PASSED [ 55%] circlator/tests/merge_test.py::TestMerge::test_filter_bridging_contigs PASSED [ 56%] circlator/tests/merge_test.py::TestMerge::test_get_hit_nearest_ref_end PASSED [ 57%] circlator/tests/merge_test.py::TestMerge::test_get_hit_nearest_ref_start PASSED [ 58%] circlator/tests/merge_test.py::TestMerge::test_get_longest_hit_at_qry_end PASSED [ 59%] circlator/tests/merge_test.py::TestMerge::test_get_longest_hit_at_qry_start PASSED [ 60%] circlator/tests/merge_test.py::TestMerge::test_get_longest_hit_at_ref_end PASSED [ 60%] circlator/tests/merge_test.py::TestMerge::test_get_longest_hit_at_ref_start PASSED [ 61%] circlator/tests/merge_test.py::TestMerge::test_get_longest_hit_by_ref_length PASSED [ 62%] circlator/tests/merge_test.py::TestMerge::test_get_possible_circular_ref_contigs PASSED [ 63%] circlator/tests/merge_test.py::TestMerge::test_get_possible_circular_ref_contigs_same_best_hits PASSED [ 64%] circlator/tests/merge_test.py::TestMerge::test_get_possible_query_bridging_contigs PASSED [ 65%] circlator/tests/merge_test.py::TestMerge::test_get_spades_circular_nodes PASSED [ 66%] circlator/tests/merge_test.py::TestMerge::test_has_qry_hit_longer_than PASSED [ 66%] circlator/tests/merge_test.py::TestMerge::test_hits_hashed_by_query PASSED [ 67%] circlator/tests/merge_test.py::TestMerge::test_hits_have_same_query PASSED [ 68%] circlator/tests/merge_test.py::TestMerge::test_hits_have_same_reference PASSED [ 69%] circlator/tests/merge_test.py::TestMerge::test_index_fasta PASSED [ 70%] circlator/tests/merge_test.py::TestMerge::test_is_at_qry_end PASSED [ 71%] circlator/tests/merge_test.py::TestMerge::test_is_at_qry_start PASSED [ 72%] circlator/tests/merge_test.py::TestMerge::test_is_at_ref_end PASSED [ 73%] circlator/tests/merge_test.py::TestMerge::test_is_at_ref_start PASSED [ 73%] circlator/tests/merge_test.py::TestMerge::test_load_nucmer_hits PASSED [ 74%] circlator/tests/merge_test.py::TestMerge::test_make_circularised_contig_1 PASSED [ 75%] circlator/tests/merge_test.py::TestMerge::test_make_circularised_contig_2 PASSED [ 76%] circlator/tests/merge_test.py::TestMerge::test_make_new_contig_from_nucmer_and_spades_not_hit PASSED [ 77%] circlator/tests/merge_test.py::TestMerge::test_make_new_contig_from_nucmer_and_spades_with_hit PASSED [ 78%] circlator/tests/merge_test.py::TestMerge::test_merge_bridged_contig_pair1 PASSED [ 79%] circlator/tests/merge_test.py::TestMerge::test_merge_bridged_contig_pair2 PASSED [ 80%] circlator/tests/merge_test.py::TestMerge::test_merge_bridged_contig_pair3 PASSED [ 80%] circlator/tests/merge_test.py::TestMerge::test_merge_bridged_contig_pair4 PASSED [ 81%] circlator/tests/merge_test.py::TestMerge::test_min_qry_hit_length PASSED [ 82%] circlator/tests/merge_test.py::TestMerge::test_orientation_ok_to_bridge_contigs PASSED [ 83%] circlator/tests/merge_test.py::TestMerge::test_remove_keys_from_dict_with_nonunique_values PASSED [ 84%] circlator/tests/merge_test.py::TestMerge::test_write_act_files PASSED [ 85%] circlator/tests/minimus2_test.py::TestMinimus2::test_run_initial_merge SKIPPED [ 86%] circlator/tests/minimus2_test.py::TestMinimus2::test_run_minimus2 SKIPPED [ 86%] circlator/tests/minimus2_test.py::TestMinimus2::test_run_minimus2_on_each_contig SKIPPED [ 87%] circlator/tests/minimus2_test.py::TestMinimus2::test_run_minimus2_on_one_contig_will_not_work SKIPPED [ 88%] circlator/tests/minimus2_test.py::TestMinimus2::test_run_minimus2_on_one_contig_will_work SKIPPED [ 89%] circlator/tests/minimus2_test.py::TestMinimus2::test_write_split_contig SKIPPED [ 90%] circlator/tests/start_fixer_test.py::TestStartFixer::test_find_circular_using_prodigal PASSED [ 91%] circlator/tests/start_fixer_test.py::TestStartFixer::test_find_circular_using_promer PASSED [ 92%] circlator/tests/start_fixer_test.py::TestStartFixer::test_init PASSED [ 93%] circlator/tests/start_fixer_test.py::TestStartFixer::test_max_length_from_fasta_file PASSED [ 93%] circlator/tests/start_fixer_test.py::TestStartFixer::test_rearrange_contigs PASSED [ 94%] circlator/tests/start_fixer_test.py::TestStartFixer::test_rename_contigs PASSED [ 95%] circlator/tests/start_fixer_test.py::TestStartFixer::test_run_bit_of_everything PASSED [ 96%] circlator/tests/start_fixer_test.py::TestStartFixer::test_run_ignore_all PASSED [ 97%] circlator/tests/start_fixer_test.py::TestStartFixer::test_run_none_for_prodigal PASSED [ 98%] circlator/tests/start_fixer_test.py::TestStartFixer::test_write_fasta_plus_circularized_ends PASSED [ 99%] circlator/tests/start_fixer_test.py::TestStartFixer::test_write_renamed_contigs PASSED [100%] =============================== warnings summary =============================== circlator/external_progs.py:22 /build/circlator-1.5.6/circlator/external_progs.py:22: DeprecationWarning: invalid escape sequence '\.' 'canu': ('-version', re.compile('^Canu.*([0-9][0-9\.]+)')), circlator/dnaa.py:18 /build/circlator-1.5.6/circlator/dnaa.py:18: DeprecationWarning: invalid escape sequence '\s' self.uniprot_search = re.sub('\s+', '+', uniprot_search.strip()) circlator/tests/assemble_test.py: 20 warnings circlator/tests/mapping_test.py: 8 warnings circlator/tests/merge_test.py: 6 warnings circlator/tests/start_fixer_test.py: 6 warnings /build/circlator-1.5.6/circlator/program.py:82: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. return LooseVersion(v) >= LooseVersion(min_version) circlator/tests/start_fixer_test.py::TestStartFixer::test_find_circular_using_prodigal circlator/tests/start_fixer_test.py::TestStartFixer::test_find_circular_using_prodigal circlator/tests/start_fixer_test.py::TestStartFixer::test_rearrange_contigs circlator/tests/start_fixer_test.py::TestStartFixer::test_rearrange_contigs circlator/tests/start_fixer_test.py::TestStartFixer::test_run_bit_of_everything circlator/tests/start_fixer_test.py::TestStartFixer::test_run_bit_of_everything /build/circlator-1.5.6/circlator/start_fixer.py:183: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. if LooseVersion(prodigal.version) >= LooseVersion('3.0'): -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================= 109 passed, 6 skipped, 48 warnings in 23.39s ================= make[1]: Leaving directory '/build/circlator-1.5.6' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/circlator/ -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/circlator-1.5.6/debian/circlator running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running build_scripts running install_lib creating /build/circlator-1.5.6/debian/circlator/usr creating /build/circlator-1.5.6/debian/circlator/usr/lib creating /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11 creating /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages creating /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator creating /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/data copying /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/data/dnaA.fasta -> /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/data copying /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/data/test_contigs.fa -> /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/data copying /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/data/test_for_reads.fa -> /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/data copying /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/data/test_make_data.sh -> /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/data copying /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/data/test_reads.fq.gz -> /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/data copying /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/data/test_ref.fa -> /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/data copying /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/data/test_ref.fa.fai -> /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/data creating /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/tasks copying /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/tasks/__init__.py -> /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/tasks copying /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/tasks/all.py -> /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/tasks copying /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/tasks/assemble.py -> /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/tasks copying /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/tasks/bam2reads.py -> /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/tasks copying /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/tasks/clean.py -> /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/tasks copying /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/tasks/fixstart.py -> /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/tasks copying /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/tasks/get_dnaa.py -> /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/tasks copying /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/tasks/mapreads.py -> /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/tasks copying /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/tasks/merge.py -> /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/tasks copying /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/tasks/minimus2.py -> /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/tasks copying /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/tasks/progcheck.py -> /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/tasks copying /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/tasks/test.py -> /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/tasks copying /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/tasks/version.py -> /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/tasks copying /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/__init__.py -> /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator copying /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/assemble.py -> /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator copying /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/assembly.py -> /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator copying /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/bamfilter.py -> /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator copying /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/clean.py -> /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator copying /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/common.py -> /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator copying /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/dnaa.py -> /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator copying /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/mapping.py -> /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator copying /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/merge.py -> /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator copying /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/minimus2.py -> /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator copying /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/program.py -> /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator copying /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/start_fixer.py -> /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator copying /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/versions.py -> /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator copying /build/circlator-1.5.6/.pybuild/cpython3_3.11/build/circlator/external_progs.py -> /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator byte-compiling /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/tasks/__init__.py to __init__.cpython-311.pyc byte-compiling /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/tasks/all.py to all.cpython-311.pyc byte-compiling /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/tasks/assemble.py to assemble.cpython-311.pyc byte-compiling /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/tasks/bam2reads.py to bam2reads.cpython-311.pyc byte-compiling /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/tasks/clean.py to clean.cpython-311.pyc byte-compiling /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/tasks/fixstart.py to fixstart.cpython-311.pyc byte-compiling /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/tasks/get_dnaa.py to get_dnaa.cpython-311.pyc byte-compiling /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/tasks/mapreads.py to mapreads.cpython-311.pyc byte-compiling /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/tasks/merge.py to merge.cpython-311.pyc byte-compiling /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/tasks/minimus2.py to minimus2.cpython-311.pyc byte-compiling /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/tasks/progcheck.py to progcheck.cpython-311.pyc byte-compiling /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/tasks/test.py to test.cpython-311.pyc byte-compiling /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/tasks/version.py to version.cpython-311.pyc byte-compiling /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/__init__.py to __init__.cpython-311.pyc byte-compiling /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/assemble.py to assemble.cpython-311.pyc byte-compiling /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/assembly.py to assembly.cpython-311.pyc byte-compiling /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/bamfilter.py to bamfilter.cpython-311.pyc byte-compiling /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/clean.py to clean.cpython-311.pyc byte-compiling /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/common.py to common.cpython-311.pyc byte-compiling /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/dnaa.py to dnaa.cpython-311.pyc byte-compiling /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/mapping.py to mapping.cpython-311.pyc byte-compiling /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/merge.py to merge.cpython-311.pyc byte-compiling /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/minimus2.py to minimus2.cpython-311.pyc byte-compiling /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/program.py to program.cpython-311.pyc byte-compiling /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/start_fixer.py to start_fixer.cpython-311.pyc byte-compiling /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/versions.py to versions.cpython-311.pyc byte-compiling /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator/external_progs.py to external_progs.cpython-311.pyc running install_egg_info running egg_info creating circlator.egg-info writing circlator.egg-info/PKG-INFO writing dependency_links to circlator.egg-info/dependency_links.txt writing requirements to circlator.egg-info/requires.txt writing top-level names to circlator.egg-info/top_level.txt writing manifest file 'circlator.egg-info/SOURCES.txt' reading manifest file 'circlator.egg-info/SOURCES.txt' adding license file 'LICENSE' adding license file 'AUTHORS' writing manifest file 'circlator.egg-info/SOURCES.txt' Copying circlator.egg-info to /build/circlator-1.5.6/debian/circlator/usr/lib/python3.11/dist-packages/circlator-1.5.5.egg-info Skipping SOURCES.txt running install_scripts creating /build/circlator-1.5.6/debian/circlator/usr/bin copying build/scripts-3.11/circlator -> /build/circlator-1.5.6/debian/circlator/usr/bin changing mode of /build/circlator-1.5.6/debian/circlator/usr/bin/circlator to 755 dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installexamples make[1]: Entering directory '/build/circlator-1.5.6' dh_installexamples cd debian/circlator/usr/share/doc/circlator/examples && tar caf data.tar.xz data --owner=0 --group=0 --numeric-owner --sort=name --mode=a+rX,og-w && rm -rf data make[1]: Leaving directory '/build/circlator-1.5.6' dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'circlator' in '../circlator_1.5.6-7_amd64.deb'. dpkg-genbuildinfo --build=binary -O../circlator_1.5.6-7_amd64.buildinfo dpkg-genchanges --build=binary -O../circlator_1.5.6-7_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2134681 and its subdirectories I: Current time: Fri May 19 12:08:54 -12 2023 I: pbuilder-time-stamp: 1684541334