Diff of the two buildlogs: -- --- b1/build.log 2024-12-03 16:15:39.447147542 +0000 +++ b2/build.log 2024-12-03 16:18:47.078669191 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Jan 5 10:36:57 -12 2026 -I: pbuilder-time-stamp: 1767652617 +I: Current time: Wed Dec 4 06:15:41 +14 2024 +I: pbuilder-time-stamp: 1733242541 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -33,54 +33,86 @@ dpkg-source: info: applying syntax-warnings.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/37664/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/59591/tmp/hooks/D01_modify_environment starting +debug: Running on ionos12-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 3 16:15 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/59591/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/59591/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=10 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='1214e620b80941a08e01c6a61ffa332d' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='37664' - PS1='# ' - PS2='> ' + INVOCATION_ID=8168b1b4e0f74e6bbcbc1b028ec23961 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=59591 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.dU48Nt3F/pbuilderrc_I84l --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.dU48Nt3F/b1 --logfile b1/build.log scoary_1.6.16-10.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.dU48Nt3F/pbuilderrc_KEDw --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.dU48Nt3F/b2 --logfile b2/build.log scoary_1.6.16-10.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos16-i386 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/37664/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/59591/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -203,7 +235,7 @@ Get: 75 http://deb.debian.org/debian unstable/main i386 python3-numpy i386 1:1.26.4+ds-12 [4752 kB] Get: 76 http://deb.debian.org/debian unstable/main i386 python3-ete3 all 3.1.3+dfsg-3 [375 kB] Get: 77 http://deb.debian.org/debian unstable/main i386 python3-scipy i386 1.14.1-3 [20.1 MB] -Fetched 62.7 MB in 1s (75.3 MB/s) +Fetched 62.7 MB in 1s (43.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19955 files and directories currently installed.) @@ -468,8 +500,8 @@ Setting up tzdata (2024b-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Mon Jan 5 22:37:18 UTC 2026. -Universal Time is now: Mon Jan 5 22:37:18 UTC 2026. +Local time is now: Tue Dec 3 16:16:14 UTC 2024. +Universal Time is now: Tue Dec 3 16:16:14 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libpython3.13-minimal:i386 (3.13.0-2) ... @@ -542,7 +574,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/scoary-1.6.16/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../scoary_1.6.16-10_source.changes +I: user script /srv/workspace/pbuilder/59591/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/59591/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/scoary-1.6.16/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../scoary_1.6.16-10_source.changes dpkg-buildpackage: info: source package scoary dpkg-buildpackage: info: source version 1.6.16-10 dpkg-buildpackage: info: source distribution unstable @@ -560,8 +596,8 @@ Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. - This deprecation is overdue, please update your project and remove deprecated - calls to avoid build errors in the future. + By 2025-Mar-03, you need to update your project and remove deprecated calls + or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** @@ -584,8 +620,8 @@ Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. - This deprecation is overdue, please update your project and remove deprecated - calls to avoid build errors in the future. + By 2025-Mar-03, you need to update your project and remove deprecated calls + or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** @@ -615,8 +651,8 @@ Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. - This deprecation is overdue, please update your project and remove deprecated - calls to avoid build errors in the future. + By 2025-Mar-03, you need to update your project and remove deprecated calls + or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** @@ -636,8 +672,8 @@ Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. - This deprecation is overdue, please update your project and remove deprecated - calls to avoid build errors in the future. + By 2025-Mar-03, you need to update your project and remove deprecated calls + or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** @@ -658,8 +694,8 @@ Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. - This deprecation is overdue, please update your project and remove deprecated - calls to avoid build errors in the future. + By 2025-Mar-03, you need to update your project and remove deprecated calls + or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** @@ -673,13 +709,13 @@ running build running build_py creating /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.13/build/scoary +copying scoary/vcf2scoary.py -> /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.13/build/scoary copying scoary/methods.py -> /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.13/build/scoary -copying scoary/GUI.py -> /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.13/build/scoary copying scoary/classes.py -> /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.13/build/scoary +copying scoary/nwkhandler.py -> /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.13/build/scoary +copying scoary/GUI.py -> /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.13/build/scoary copying scoary/__init__.py -> /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.13/build/scoary -copying scoary/vcf2scoary.py -> /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.13/build/scoary copying scoary/citation.py -> /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.13/build/scoary -copying scoary/nwkhandler.py -> /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.13/build/scoary running egg_info creating scoary.egg-info writing scoary.egg-info/PKG-INFO @@ -748,8 +784,8 @@ Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. - This deprecation is overdue, please update your project and remove deprecated - calls to avoid build errors in the future. + By 2025-Mar-03, you need to update your project and remove deprecated calls + or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** @@ -763,13 +799,13 @@ running build running build_py creating /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.12/build/scoary +copying scoary/vcf2scoary.py -> /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.12/build/scoary copying scoary/methods.py -> /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.12/build/scoary -copying scoary/GUI.py -> /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.12/build/scoary copying scoary/classes.py -> /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.12/build/scoary +copying scoary/nwkhandler.py -> /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.12/build/scoary +copying scoary/GUI.py -> /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.12/build/scoary copying scoary/__init__.py -> /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.12/build/scoary -copying scoary/vcf2scoary.py -> /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.12/build/scoary copying scoary/citation.py -> /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.12/build/scoary -copying scoary/nwkhandler.py -> /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.12/build/scoary running egg_info writing scoary.egg-info/PKG-INFO writing dependency_links to scoary.egg-info/dependency_links.txt @@ -897,7 +933,7 @@ ==== Finished ==== -Checked a total of 9001 genes for associations to 2 trait(s). Total time used: 7 seconds. +Checked a total of 9001 genes for associations to 2 trait(s). Total time used: 14 seconds. Scoary finished successfully, but with WARNINGS. Please check your log file. Warning. Since 1.5.0 scoary.py is deprecated. Install Scoary using 'pip install scoary instead, and run using scoary ==== Scoary started ==== @@ -934,7 +970,7 @@ ==== Finished ==== -Checked a total of 9001 genes for associations to 2 trait(s). Total time used: 4 seconds. +Checked a total of 9001 genes for associations to 2 trait(s). Total time used: 8 seconds. Scoary finished successfully, but with WARNINGS. Please check your log file. Warning. Since 1.5.0 scoary.py is deprecated. Install Scoary using 'pip install scoary instead, and run using scoary ==== Scoary started ==== @@ -975,7 +1011,7 @@ ==== Finished ==== -Checked a total of 9001 genes for associations to 2 trait(s). Total time used: 3 seconds. +Checked a total of 9001 genes for associations to 2 trait(s). Total time used: 6 seconds. Scoary finished successfully, but with WARNINGS. Please check your log file. Warning. Since 1.5.0 scoary.py is deprecated. Install Scoary using 'pip install scoary instead, and run using scoary ==== Scoary started ==== @@ -1015,7 +1051,7 @@ ==== Finished ==== -Checked a total of 9001 genes for associations to 2 trait(s). Total time used: 5 seconds. +Checked a total of 9001 genes for associations to 2 trait(s). Total time used: 9 seconds. Scoary finished successfully, but with WARNINGS. Please check your log file. VCF version 4.1 detected Reached the end of the file @@ -1056,7 +1092,7 @@ ==== Finished ==== -Checked a total of 9001 genes for associations to 2 trait(s). Total time used: 7 seconds. +Checked a total of 9001 genes for associations to 2 trait(s). Total time used: 14 seconds. Scoary finished successfully, but with WARNINGS. Please check your log file. Warning. Since 1.5.0 scoary.py is deprecated. Install Scoary using 'pip install scoary instead, and run using scoary ==== Scoary started ==== @@ -1093,7 +1129,7 @@ ==== Finished ==== -Checked a total of 9001 genes for associations to 2 trait(s). Total time used: 4 seconds. +Checked a total of 9001 genes for associations to 2 trait(s). Total time used: 11 seconds. Scoary finished successfully, but with WARNINGS. Please check your log file. Warning. Since 1.5.0 scoary.py is deprecated. Install Scoary using 'pip install scoary instead, and run using scoary ==== Scoary started ==== @@ -1134,7 +1170,7 @@ ==== Finished ==== -Checked a total of 9001 genes for associations to 2 trait(s). Total time used: 3 seconds. +Checked a total of 9001 genes for associations to 2 trait(s). Total time used: 7 seconds. Scoary finished successfully, but with WARNINGS. Please check your log file. Warning. Since 1.5.0 scoary.py is deprecated. Install Scoary using 'pip install scoary instead, and run using scoary ==== Scoary started ==== @@ -1174,7 +1210,7 @@ ==== Finished ==== -Checked a total of 9001 genes for associations to 2 trait(s). Total time used: 6 seconds. +Checked a total of 9001 genes for associations to 2 trait(s). Total time used: 12 seconds. Scoary finished successfully, but with WARNINGS. Please check your log file. VCF version 4.1 detected Reached the end of the file @@ -1191,8 +1227,8 @@ Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. - This deprecation is overdue, please update your project and remove deprecated - calls to avoid build errors in the future. + By 2025-Mar-03, you need to update your project and remove deprecated calls + or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** @@ -1273,27 +1309,27 @@ running install_lib creating /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.13/dist-packages creating /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.13/dist-packages/scoary +copying /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.13/build/scoary/vcf2scoary.py -> /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.13/dist-packages/scoary copying /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.13/build/scoary/methods.py -> /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.13/dist-packages/scoary -copying /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.13/build/scoary/GUI.py -> /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.13/dist-packages/scoary copying /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.13/build/scoary/classes.py -> /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.13/dist-packages/scoary +copying /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.13/build/scoary/nwkhandler.py -> /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.13/dist-packages/scoary +copying /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.13/build/scoary/GUI.py -> /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.13/dist-packages/scoary copying /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.13/build/scoary/__init__.py -> /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.13/dist-packages/scoary -copying /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.13/build/scoary/vcf2scoary.py -> /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.13/dist-packages/scoary copying /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.13/build/scoary/citation.py -> /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.13/dist-packages/scoary creating /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.13/dist-packages/scoary/exampledata copying /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.13/build/scoary/exampledata/ExampleTree.nwk -> /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.13/dist-packages/scoary/exampledata -copying /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.13/build/scoary/exampledata/Restrict_to.csv -> /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.13/dist-packages/scoary/exampledata -copying /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.13/build/scoary/exampledata/ExampleVCFTrait.csv -> /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.13/dist-packages/scoary/exampledata copying /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.13/build/scoary/exampledata/Gene_presence_absence.csv -> /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.13/dist-packages/scoary/exampledata -copying /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.13/build/scoary/exampledata/Tetracycline_resistance.csv -> /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.13/dist-packages/scoary/exampledata copying /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.13/build/scoary/exampledata/Example.vcf -> /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.13/dist-packages/scoary/exampledata -copying /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.13/build/scoary/nwkhandler.py -> /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.13/dist-packages/scoary +copying /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.13/build/scoary/exampledata/Tetracycline_resistance.csv -> /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.13/dist-packages/scoary/exampledata +copying /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.13/build/scoary/exampledata/Restrict_to.csv -> /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.13/dist-packages/scoary/exampledata +copying /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.13/build/scoary/exampledata/ExampleVCFTrait.csv -> /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.13/dist-packages/scoary/exampledata +byte-compiling /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.13/dist-packages/scoary/vcf2scoary.py to vcf2scoary.cpython-313.pyc byte-compiling /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.13/dist-packages/scoary/methods.py to methods.cpython-313.pyc -byte-compiling /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.13/dist-packages/scoary/GUI.py to GUI.cpython-313.pyc byte-compiling /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.13/dist-packages/scoary/classes.py to classes.cpython-313.pyc +byte-compiling /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.13/dist-packages/scoary/nwkhandler.py to nwkhandler.cpython-313.pyc +byte-compiling /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.13/dist-packages/scoary/GUI.py to GUI.cpython-313.pyc byte-compiling /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.13/dist-packages/scoary/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.13/dist-packages/scoary/vcf2scoary.py to vcf2scoary.cpython-313.pyc byte-compiling /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.13/dist-packages/scoary/citation.py to citation.cpython-313.pyc -byte-compiling /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.13/dist-packages/scoary/nwkhandler.py to nwkhandler.cpython-313.pyc running install_egg_info Copying scoary.egg-info to /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.13/dist-packages/scoary-1.6.16.egg-info Skipping SOURCES.txt @@ -1309,8 +1345,8 @@ Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. - This deprecation is overdue, please update your project and remove deprecated - calls to avoid build errors in the future. + By 2025-Mar-03, you need to update your project and remove deprecated calls + or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** @@ -1391,27 +1427,27 @@ running install_lib creating /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.12/dist-packages creating /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.12/dist-packages/scoary +copying /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.12/build/scoary/vcf2scoary.py -> /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.12/dist-packages/scoary copying /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.12/build/scoary/methods.py -> /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.12/dist-packages/scoary -copying /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.12/build/scoary/GUI.py -> /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.12/dist-packages/scoary copying /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.12/build/scoary/classes.py -> /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.12/dist-packages/scoary +copying /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.12/build/scoary/nwkhandler.py -> /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.12/dist-packages/scoary +copying /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.12/build/scoary/GUI.py -> /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.12/dist-packages/scoary copying /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.12/build/scoary/__init__.py -> /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.12/dist-packages/scoary -copying /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.12/build/scoary/vcf2scoary.py -> /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.12/dist-packages/scoary copying /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.12/build/scoary/citation.py -> /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.12/dist-packages/scoary creating /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.12/dist-packages/scoary/exampledata copying /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.12/build/scoary/exampledata/ExampleTree.nwk -> /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.12/dist-packages/scoary/exampledata -copying /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.12/build/scoary/exampledata/Restrict_to.csv -> /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.12/dist-packages/scoary/exampledata -copying /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.12/build/scoary/exampledata/ExampleVCFTrait.csv -> /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.12/dist-packages/scoary/exampledata copying /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.12/build/scoary/exampledata/Gene_presence_absence.csv -> /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.12/dist-packages/scoary/exampledata -copying /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.12/build/scoary/exampledata/Tetracycline_resistance.csv -> /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.12/dist-packages/scoary/exampledata copying /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.12/build/scoary/exampledata/Example.vcf -> /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.12/dist-packages/scoary/exampledata -copying /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.12/build/scoary/nwkhandler.py -> /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.12/dist-packages/scoary +copying /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.12/build/scoary/exampledata/Tetracycline_resistance.csv -> /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.12/dist-packages/scoary/exampledata +copying /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.12/build/scoary/exampledata/Restrict_to.csv -> /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.12/dist-packages/scoary/exampledata +copying /build/reproducible-path/scoary-1.6.16/.pybuild/cpython3_3.12/build/scoary/exampledata/ExampleVCFTrait.csv -> /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.12/dist-packages/scoary/exampledata +byte-compiling /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.12/dist-packages/scoary/vcf2scoary.py to vcf2scoary.cpython-312.pyc byte-compiling /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.12/dist-packages/scoary/methods.py to methods.cpython-312.pyc -byte-compiling /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.12/dist-packages/scoary/GUI.py to GUI.cpython-312.pyc byte-compiling /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.12/dist-packages/scoary/classes.py to classes.cpython-312.pyc +byte-compiling /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.12/dist-packages/scoary/nwkhandler.py to nwkhandler.cpython-312.pyc +byte-compiling /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.12/dist-packages/scoary/GUI.py to GUI.cpython-312.pyc byte-compiling /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.12/dist-packages/scoary/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.12/dist-packages/scoary/vcf2scoary.py to vcf2scoary.cpython-312.pyc byte-compiling /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.12/dist-packages/scoary/citation.py to citation.cpython-312.pyc -byte-compiling /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.12/dist-packages/scoary/nwkhandler.py to nwkhandler.cpython-312.pyc running install_egg_info Copying scoary.egg-info to /build/reproducible-path/scoary-1.6.16/debian/scoary/usr/lib/python3.12/dist-packages/scoary-1.6.16.egg-info Skipping SOURCES.txt @@ -1443,12 +1479,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/59591/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/59591/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/37664 and its subdirectories -I: Current time: Mon Jan 5 10:38:37 -12 2026 -I: pbuilder-time-stamp: 1767652717 +I: removing directory /srv/workspace/pbuilder/59591 and its subdirectories +I: Current time: Wed Dec 4 06:18:46 +14 2024 +I: pbuilder-time-stamp: 1733242726