Diff of the two buildlogs: -- --- b1/build.log 2024-04-17 11:26:00.494318442 +0000 +++ b2/build.log 2024-04-17 11:27:44.277923546 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue May 20 05:48:04 -12 2025 -I: pbuilder-time-stamp: 1747763284 +I: Current time: Thu Apr 18 01:26:03 +14 2024 +I: pbuilder-time-stamp: 1713353163 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -27,54 +27,86 @@ dpkg-source: info: unpacking schroedinger-coordgenlibs_3.0.2-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/93809/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/45116/tmp/hooks/D01_modify_environment starting +debug: Running on ionos2-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 17 11:26 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/45116/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/45116/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=10 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='1c1433b03e6c4b9b97debafd9435e325' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='93809' - PS1='# ' - PS2='> ' + INVOCATION_ID=10fa9aa1512343b8abbf205644ec9688 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=45116 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.8I9UvLGd/pbuilderrc_dPzF --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.8I9UvLGd/b1 --logfile b1/build.log schroedinger-coordgenlibs_3.0.2-1.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.8I9UvLGd/pbuilderrc_sXAB --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.8I9UvLGd/b2 --logfile b2/build.log schroedinger-coordgenlibs_3.0.2-1.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos6-i386 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 20 14:05 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/93809/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Apr 16 07:42 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/45116/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -199,7 +231,7 @@ Get: 73 http://deb.debian.org/debian unstable/main i386 libmaeparser1 i386 1.3.1-1+b1 [99.9 kB] Get: 74 http://deb.debian.org/debian unstable/main i386 libmaeparser-dev i386 1.3.1-1+b1 [13.6 kB] Get: 75 http://deb.debian.org/debian unstable/main i386 zlib1g-dev i386 1:1.3.dfsg-3.1 [915 kB] -Fetched 63.0 MB in 1s (65.3 MB/s) +Fetched 63.0 MB in 1s (51.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19681 files and directories currently installed.) @@ -514,7 +546,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../schroedinger-coordgenlibs_3.0.2-1_source.changes +I: user script /srv/workspace/pbuilder/45116/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/45116/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../schroedinger-coordgenlibs_3.0.2-1_source.changes dpkg-buildpackage: info: source package schroedinger-coordgenlibs dpkg-buildpackage: info: source version 3.0.2-1 dpkg-buildpackage: info: source distribution unstable @@ -556,7 +592,7 @@ -- Found Boost: /usr/lib/i386-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") -- Found Boost: /usr/lib/i386-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") found components: filesystem -- Found Boost: /usr/lib/i386-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") found components: filesystem unit_test_framework --- Configuring done (0.5s) +-- Configuring done (0.9s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -568,7 +604,7 @@ -- Build files have been written to: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-i686-linux-gnu dh_auto_build - cd obj-i686-linux-gnu && make -j22 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-i686-linux-gnu && make -j10 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/schroedinger-coordgenlibs-3.0.2 -B/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-i686-linux-gnu/CMakeFiles /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-i686-linux-gnu//CMakeFiles/progress.marks @@ -580,33 +616,33 @@ make[3]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-i686-linux-gnu' make -f CMakeFiles/coordgen.dir/build.make CMakeFiles/coordgen.dir/build make[3]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-i686-linux-gnu' -[ 4%] Building CXX object CMakeFiles/coordgen.dir/CoordgenFragmentBuilder.cpp.o -/usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/CoordgenFragmentBuilder.cpp.o -MF CMakeFiles/coordgen.dir/CoordgenFragmentBuilder.cpp.o.d -o CMakeFiles/coordgen.dir/CoordgenFragmentBuilder.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/CoordgenFragmentBuilder.cpp -[ 9%] Building CXX object CMakeFiles/coordgen.dir/CoordgenFragmenter.cpp.o -[ 14%] Building CXX object CMakeFiles/coordgen.dir/CoordgenTemplates.cpp.o -[ 19%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizer.cpp.o +[ 4%] Building CXX object CMakeFiles/coordgen.dir/CoordgenMacrocycleBuilder.cpp.o +[ 9%] Building CXX object CMakeFiles/coordgen.dir/CoordgenTemplates.cpp.o +[ 14%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerFragment.cpp.o +/usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/CoordgenMacrocycleBuilder.cpp.o -MF CMakeFiles/coordgen.dir/CoordgenMacrocycleBuilder.cpp.o.d -o CMakeFiles/coordgen.dir/CoordgenMacrocycleBuilder.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/CoordgenMacrocycleBuilder.cpp +[ 23%] Building CXX object CMakeFiles/coordgen.dir/CoordgenMinimizer.cpp.o /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/CoordgenTemplates.cpp.o -MF CMakeFiles/coordgen.dir/CoordgenTemplates.cpp.o.d -o CMakeFiles/coordgen.dir/CoordgenTemplates.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/CoordgenTemplates.cpp -[ 23%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerAtom.cpp.o +[ 23%] Building CXX object CMakeFiles/coordgen.dir/CoordgenFragmenter.cpp.o +[ 28%] Building CXX object CMakeFiles/coordgen.dir/CoordgenFragmentBuilder.cpp.o +/usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizerFragment.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizerFragment.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizerFragment.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/sketcherMinimizerFragment.cpp +/usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/CoordgenFragmentBuilder.cpp.o -MF CMakeFiles/coordgen.dir/CoordgenFragmentBuilder.cpp.o.d -o CMakeFiles/coordgen.dir/CoordgenFragmentBuilder.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/CoordgenFragmentBuilder.cpp /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/CoordgenFragmenter.cpp.o -MF CMakeFiles/coordgen.dir/CoordgenFragmenter.cpp.o.d -o CMakeFiles/coordgen.dir/CoordgenFragmenter.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/CoordgenFragmenter.cpp -[ 28%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerFragment.cpp.o -/usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizer.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizer.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizer.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/sketcherMinimizer.cpp -[ 33%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerBond.cpp.o [ 38%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerMarchingSquares.cpp.o +[ 38%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerBond.cpp.o +[ 42%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizer.cpp.o +[ 47%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerAtom.cpp.o +/usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/CoordgenMinimizer.cpp.o -MF CMakeFiles/coordgen.dir/CoordgenMinimizer.cpp.o.d -o CMakeFiles/coordgen.dir/CoordgenMinimizer.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/CoordgenMinimizer.cpp /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizerAtom.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizerAtom.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizerAtom.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/sketcherMinimizerAtom.cpp -[ 42%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerMolecule.cpp.o -/usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizerFragment.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizerFragment.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizerFragment.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/sketcherMinimizerFragment.cpp -[ 47%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerResidue.cpp.o /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizerBond.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizerBond.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizerBond.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/sketcherMinimizerBond.cpp -[ 52%] Building CXX object CMakeFiles/coordgen.dir/CoordgenMacrocycleBuilder.cpp.o +/usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizer.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizer.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizer.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/sketcherMinimizer.cpp /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizerMarchingSquares.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizerMarchingSquares.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizerMarchingSquares.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/sketcherMinimizerMarchingSquares.cpp -[ 57%] Building CXX object CMakeFiles/coordgen.dir/CoordgenMinimizer.cpp.o +[ 52%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerMolecule.cpp.o /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizerMolecule.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizerMolecule.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizerMolecule.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/sketcherMinimizerMolecule.cpp +[ 57%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerResidue.cpp.o /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizerResidue.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizerResidue.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizerResidue.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/sketcherMinimizerResidue.cpp -/usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/CoordgenMacrocycleBuilder.cpp.o -MF CMakeFiles/coordgen.dir/CoordgenMacrocycleBuilder.cpp.o.d -o CMakeFiles/coordgen.dir/CoordgenMacrocycleBuilder.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/CoordgenMacrocycleBuilder.cpp -/usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/CoordgenMinimizer.cpp.o -MF CMakeFiles/coordgen.dir/CoordgenMinimizer.cpp.o.d -o CMakeFiles/coordgen.dir/CoordgenMinimizer.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/CoordgenMinimizer.cpp [ 61%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerResidueInteraction.cpp.o -[ 66%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerRing.cpp.o /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizerResidueInteraction.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizerResidueInteraction.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizerResidueInteraction.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/sketcherMinimizerResidueInteraction.cpp +[ 66%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerRing.cpp.o /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizerRing.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizerRing.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizerRing.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/sketcherMinimizerRing.cpp [ 71%] Linking CXX shared library libcoordgen.so /usr/bin/cmake -E cmake_link_script CMakeFiles/coordgen.dir/link.txt --verbose=1 @@ -624,20 +660,20 @@ make[3]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-i686-linux-gnu' cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/schroedinger-coordgenlibs-3.0.2 /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/test /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-i686-linux-gnu /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-i686-linux-gnu/test /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-i686-linux-gnu/test/CMakeFiles/test_smilesparser.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-i686-linux-gnu' +make -f test/CMakeFiles/test_smilesparser.dir/build.make test/CMakeFiles/test_smilesparser.dir/build make[3]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-i686-linux-gnu' -make -f example_dir/CMakeFiles/example.dir/build.make example_dir/CMakeFiles/example.dir/build -make -f test/CMakeFiles/test_coordgen.dir/build.make test/CMakeFiles/test_coordgen.dir/build make[3]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-i686-linux-gnu' -make -f test/CMakeFiles/test_smilesparser.dir/build.make test/CMakeFiles/test_smilesparser.dir/build make[3]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-i686-linux-gnu' +make -f example_dir/CMakeFiles/example.dir/build.make example_dir/CMakeFiles/example.dir/build +make -f test/CMakeFiles/test_coordgen.dir/build.make test/CMakeFiles/test_coordgen.dir/build make[3]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-i686-linux-gnu' -[ 76%] Building CXX object example_dir/CMakeFiles/example.dir/example.cpp.o -[ 80%] Building CXX object test/CMakeFiles/test_coordgen.dir/test_coordgen.cpp.o +[ 76%] Building CXX object test/CMakeFiles/test_smilesparser.dir/test_smilesparser.cpp.o +cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-i686-linux-gnu/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Werror -MD -MT test/CMakeFiles/test_smilesparser.dir/test_smilesparser.cpp.o -MF CMakeFiles/test_smilesparser.dir/test_smilesparser.cpp.o.d -o CMakeFiles/test_smilesparser.dir/test_smilesparser.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/test/test_smilesparser.cpp +[ 85%] Building CXX object example_dir/CMakeFiles/example.dir/example.cpp.o +[ 85%] Building CXX object test/CMakeFiles/test_coordgen.dir/test_coordgen.cpp.o cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-i686-linux-gnu/example_dir && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Werror -MD -MT example_dir/CMakeFiles/example.dir/example.cpp.o -MF CMakeFiles/example.dir/example.cpp.o.d -o CMakeFiles/example.dir/example.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/example_dir/example.cpp cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-i686-linux-gnu/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DSOURCE_DIR=\"/build/reproducible-path/schroedinger-coordgenlibs-3.0.2\" -DTEST_SAMPLES_PATH=\"/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/test\" -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Werror -MD -MT test/CMakeFiles/test_coordgen.dir/test_coordgen.cpp.o -MF CMakeFiles/test_coordgen.dir/test_coordgen.cpp.o.d -o CMakeFiles/test_coordgen.dir/test_coordgen.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/test/test_coordgen.cpp -[ 85%] Building CXX object test/CMakeFiles/test_smilesparser.dir/test_smilesparser.cpp.o -cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-i686-linux-gnu/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Werror -MD -MT test/CMakeFiles/test_smilesparser.dir/test_smilesparser.cpp.o -MF CMakeFiles/test_smilesparser.dir/test_smilesparser.cpp.o.d -o CMakeFiles/test_smilesparser.dir/test_smilesparser.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/test/test_smilesparser.cpp [ 90%] Linking CXX executable example cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-i686-linux-gnu/example_dir && /usr/bin/cmake -E cmake_link_script CMakeFiles/example.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/example.dir/example.cpp.o -o example -Wl,-rpath,/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-i686-linux-gnu ../libcoordgen.so.3.0.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 @@ -657,10 +693,10 @@ /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-i686-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-i686-linux-gnu' dh_auto_test - cd obj-i686-linux-gnu && make -j22 test ARGS\+=--verbose ARGS\+=-j22 + cd obj-i686-linux-gnu && make -j10 test ARGS\+=--verbose ARGS\+=-j10 make[1]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-i686-linux-gnu' Running tests... -/usr/bin/ctest --force-new-ctest-process --verbose -j22 +/usr/bin/ctest --force-new-ctest-process --verbose -j10 UpdateCTestConfiguration from :/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-i686-linux-gnu/DartConfiguration.tcl Parse Config file:/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-i686-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-i686-linux-gnu/DartConfiguration.tcl @@ -691,27 +727,27 @@ 3: Working Directory: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-i686-linux-gnu/test 3: Test timeout computed to be: 1500 1: (-50, 0) (0, 0) -1/3 Test #1: example .......................... Passed 0.00 sec -2: Running 16 test cases... -2: -2: *** No errors detected -2:  -2/3 Test #2: test_coordgen .................... Passed 1.68 sec +1/3 Test #1: example .......................... Passed 0.03 sec 3: Running 16 test cases... 3: 3: *** No errors detected 3:  -3/3 Test #3: test_smilesparser ................ Passed 1.73 sec +2/3 Test #3: test_smilesparser ................ Passed 3.38 sec +2: Running 16 test cases... +2: +2: *** No errors detected +2:  +3/3 Test #2: test_coordgen .................... Passed 3.47 sec 100% tests passed, 0 tests failed out of 3 -Total Test time (real) = 1.74 sec +Total Test time (real) = 3.48 sec make[1]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-i686-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs dh_auto_install - cd obj-i686-linux-gnu && make -j22 install DESTDIR=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-i686-linux-gnu && make -j10 install DESTDIR=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/schroedinger-coordgenlibs-3.0.2 -B/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -765,9 +801,9 @@ dh_gencontrol dh_md5sums dh_builddeb +dpkg-deb: building package 'libcoordgen3-dbgsym' in '../libcoordgen3-dbgsym_3.0.2-1_i386.deb'. dpkg-deb: building package 'libcoordgen-dev' in '../libcoordgen-dev_3.0.2-1_i386.deb'. dpkg-deb: building package 'libcoordgen3' in '../libcoordgen3_3.0.2-1_i386.deb'. -dpkg-deb: building package 'libcoordgen3-dbgsym' in '../libcoordgen3-dbgsym_3.0.2-1_i386.deb'. dpkg-genbuildinfo --build=binary -O../schroedinger-coordgenlibs_3.0.2-1_i386.buildinfo dpkg-genchanges --build=binary -O../schroedinger-coordgenlibs_3.0.2-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -775,12 +811,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/45116/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/45116/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/93809 and its subdirectories -I: Current time: Tue May 20 05:48:59 -12 2025 -I: pbuilder-time-stamp: 1747763339 +I: removing directory /srv/workspace/pbuilder/45116 and its subdirectories +I: Current time: Thu Apr 18 01:27:43 +14 2024 +I: pbuilder-time-stamp: 1713353263