Diff of the two buildlogs:

--
--- b1/build.log	2024-12-28 07:41:36.670924408 +0000
+++ b2/build.log	2024-12-28 07:51:40.163398298 +0000
@@ -1,6 +1,6 @@
 I: pbuilder: network access will be disabled during build
-I: Current time: Fri Jan 30 01:59:48 -12 2026
-I: pbuilder-time-stamp: 1769781588
+I: Current time: Sat Dec 28 21:41:39 +14 2024
+I: pbuilder-time-stamp: 1735371699
 I: Building the build Environment
 I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
 I: copying local configuration
@@ -33,54 +33,86 @@
 dpkg-source: info: applying test-tempdir
 I: Not using root during the build.
 I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/85583/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/61238/tmp/hooks/D01_modify_environment starting
+debug: Running on ionos2-i386.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+'/bin/sh' -> '/bin/bash'
+lrwxrwxrwx 1 root root 9 Dec 28 07:41 /bin/sh -> /bin/bash
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/61238/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/61238/tmp/hooks/D02_print_environment starting
 I: set
-  BUILDDIR='/build/reproducible-path'
-  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
-  BUILDUSERNAME='pbuilder1'
-  BUILD_ARCH='i386'
-  DEBIAN_FRONTEND='noninteractive'
-  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 '
-  DISTRIBUTION='unstable'
-  HOME='/root'
-  HOST_ARCH='i386'
+  BASH=/bin/sh
+  BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
+  BASH_ALIASES=()
+  BASH_ARGC=()
+  BASH_ARGV=()
+  BASH_CMDS=()
+  BASH_LINENO=([0]="12" [1]="0")
+  BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
+  BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
+  BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="i686-pc-linux-gnu")
+  BASH_VERSION='5.2.37(1)-release'
+  BUILDDIR=/build/reproducible-path
+  BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+  BUILDUSERNAME=pbuilder2
+  BUILD_ARCH=i386
+  DEBIAN_FRONTEND=noninteractive
+  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=10 '
+  DIRSTACK=()
+  DISTRIBUTION=unstable
+  EUID=0
+  FUNCNAME=([0]="Echo" [1]="main")
+  GROUPS=()
+  HOME=/root
+  HOSTNAME=i-capture-the-hostname
+  HOSTTYPE=i686
+  HOST_ARCH=i386
   IFS=' 	
   '
-  INVOCATION_ID='6be5c9c2253e4335af2ae02daa7a830c'
-  LANG='C'
-  LANGUAGE='en_US:en'
-  LC_ALL='C'
-  LD_LIBRARY_PATH='/usr/lib/libeatmydata'
-  LD_PRELOAD='libeatmydata.so'
-  MAIL='/var/mail/root'
-  OPTIND='1'
-  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
-  PBCURRENTCOMMANDLINEOPERATION='build'
-  PBUILDER_OPERATION='build'
-  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
-  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
-  PBUILDER_SYSCONFDIR='/etc'
-  PPID='85583'
-  PS1='# '
-  PS2='> '
+  INVOCATION_ID=38825571bbae428db3a2f542f30a68bc
+  LANG=C
+  LANGUAGE=de_CH:de
+  LC_ALL=C
+  LD_LIBRARY_PATH=/usr/lib/libeatmydata
+  LD_PRELOAD=libeatmydata.so
+  MACHTYPE=i686-pc-linux-gnu
+  MAIL=/var/mail/root
+  OPTERR=1
+  OPTIND=1
+  OSTYPE=linux-gnu
+  PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
+  PBCURRENTCOMMANDLINEOPERATION=build
+  PBUILDER_OPERATION=build
+  PBUILDER_PKGDATADIR=/usr/share/pbuilder
+  PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
+  PBUILDER_SYSCONFDIR=/etc
+  PIPESTATUS=([0]="0")
+  POSIXLY_CORRECT=y
+  PPID=61238
   PS4='+ '
-  PWD='/'
-  SHELL='/bin/bash'
-  SHLVL='2'
-  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.gNyMwjI2/pbuilderrc_HfYI --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.gNyMwjI2/b1 --logfile b1/build.log python-pybedtools_0.10.0-4.dsc'
-  SUDO_GID='112'
-  SUDO_UID='107'
-  SUDO_USER='jenkins'
-  TERM='unknown'
-  TZ='/usr/share/zoneinfo/Etc/GMT+12'
-  USER='root'
-  _='/usr/bin/systemd-run'
-  http_proxy='http://213.165.73.152:3128'
+  PWD=/
+  SHELL=/bin/bash
+  SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
+  SHLVL=3
+  SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.gNyMwjI2/pbuilderrc_hLKk --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.gNyMwjI2/b2 --logfile b2/build.log python-pybedtools_0.10.0-4.dsc'
+  SUDO_GID=112
+  SUDO_UID=107
+  SUDO_USER=jenkins
+  TERM=unknown
+  TZ=/usr/share/zoneinfo/Etc/GMT-14
+  UID=0
+  USER=root
+  _='I: set'
+  http_proxy=http://46.16.76.132:3128
 I: uname -a
-  Linux ionos6-i386 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux
+  Linux i-capture-the-hostname 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux
 I: ls -l /bin
-  lrwxrwxrwx 1 root root 7 Nov 22  2024 /bin -> usr/bin
-I: user script /srv/workspace/pbuilder/85583/tmp/hooks/D02_print_environment finished
+  lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
+I: user script /srv/workspace/pbuilder/61238/tmp/hooks/D02_print_environment finished
  -> Attempting to satisfy build-dependencies
  -> Creating pbuilder-satisfydepends-dummy package
 Package: pbuilder-satisfydepends-dummy
@@ -396,7 +428,7 @@
 Get: 244 http://deb.debian.org/debian unstable/main i386 unzip i386 6.0-28 [166 kB]
 Get: 245 http://deb.debian.org/debian unstable/main i386 xdg-utils all 1.2.1-2 [75.8 kB]
 Get: 246 http://deb.debian.org/debian unstable/main i386 r-base-core i386 4.4.2-1 [28.3 MB]
-Fetched 187 MB in 2s (112 MB/s)
+Fetched 187 MB in 3s (74.4 MB/s)
 Preconfiguring packages ...
 Selecting previously unselected package libpython3.12-minimal:i386.
 (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19844 files and directories currently installed.)
@@ -1196,8 +1228,8 @@
 Setting up tzdata (2024b-4) ...
 
 Current default time zone: 'Etc/UTC'
-Local time is now:      Fri Jan 30 14:00:28 UTC 2026.
-Universal Time is now:  Fri Jan 30 14:00:28 UTC 2026.
+Local time is now:      Sat Dec 28 07:42:39 UTC 2024.
+Universal Time is now:  Sat Dec 28 07:42:39 UTC 2024.
 Run 'dpkg-reconfigure tzdata' if you wish to change it.
 
 Setting up unicode-data (15.1.0-1) ...
@@ -1428,7 +1460,11 @@
 Building tag database...
  -> Finished parsing the build-deps
 I: Building the package
-I: Running cd /build/reproducible-path/python-pybedtools-0.10.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../python-pybedtools_0.10.0-4_source.changes
+I: user script /srv/workspace/pbuilder/61238/tmp/hooks/A99_set_merged_usr starting
+Not re-configuring usrmerge for unstable
+I: user script /srv/workspace/pbuilder/61238/tmp/hooks/A99_set_merged_usr finished
+hostname: Name or service not known
+I: Running cd /build/reproducible-path/python-pybedtools-0.10.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S  > ../python-pybedtools_0.10.0-4_source.changes
 dpkg-buildpackage: info: source package python-pybedtools
 dpkg-buildpackage: info: source version 0.10.0-4
 dpkg-buildpackage: info: source distribution unstable
@@ -1480,8 +1516,8 @@
         Please discontinue using this option, or if you still need it,
         file an issue with pypa/setuptools describing your use case.
 
-        This deprecation is overdue, please update your project and remove deprecated
-        calls to avoid build errors in the future.
+        By 2025-Aug-30, you need to update your project and remove deprecated calls
+        or your builds will no longer be supported.
         ********************************************************************************
 
 !!
@@ -1489,39 +1525,39 @@
 running build
 running build_py
 creating build/lib.linux-i686-cpython-313/pybedtools
-copying pybedtools/genome_registry.py -> build/lib.linux-i686-cpython-313/pybedtools
 copying pybedtools/helpers.py -> build/lib.linux-i686-cpython-313/pybedtools
-copying pybedtools/parallel.py -> build/lib.linux-i686-cpython-313/pybedtools
-copying pybedtools/logger.py -> build/lib.linux-i686-cpython-313/pybedtools
-copying pybedtools/version.py -> build/lib.linux-i686-cpython-313/pybedtools
 copying pybedtools/stats.py -> build/lib.linux-i686-cpython-313/pybedtools
-copying pybedtools/__init__.py -> build/lib.linux-i686-cpython-313/pybedtools
-copying pybedtools/settings.py -> build/lib.linux-i686-cpython-313/pybedtools
-copying pybedtools/bedtool.py -> build/lib.linux-i686-cpython-313/pybedtools
 copying pybedtools/paths.py -> build/lib.linux-i686-cpython-313/pybedtools
+copying pybedtools/bedtool.py -> build/lib.linux-i686-cpython-313/pybedtools
+copying pybedtools/parallel.py -> build/lib.linux-i686-cpython-313/pybedtools
 copying pybedtools/filenames.py -> build/lib.linux-i686-cpython-313/pybedtools
+copying pybedtools/settings.py -> build/lib.linux-i686-cpython-313/pybedtools
+copying pybedtools/version.py -> build/lib.linux-i686-cpython-313/pybedtools
+copying pybedtools/logger.py -> build/lib.linux-i686-cpython-313/pybedtools
+copying pybedtools/genome_registry.py -> build/lib.linux-i686-cpython-313/pybedtools
+copying pybedtools/__init__.py -> build/lib.linux-i686-cpython-313/pybedtools
 creating build/lib.linux-i686-cpython-313/pybedtools/test
-copying pybedtools/test/test_1.py -> build/lib.linux-i686-cpython-313/pybedtools/test
-copying pybedtools/test/test_len_leak.py -> build/lib.linux-i686-cpython-313/pybedtools/test
+copying pybedtools/test/test_issues.py -> build/lib.linux-i686-cpython-313/pybedtools/test
+copying pybedtools/test/genomepy_integration.py -> build/lib.linux-i686-cpython-313/pybedtools/test
+copying pybedtools/test/test_cbedtools.py -> build/lib.linux-i686-cpython-313/pybedtools/test
+copying pybedtools/test/test_contrib.py -> build/lib.linux-i686-cpython-313/pybedtools/test
 copying pybedtools/test/test_iter.py -> build/lib.linux-i686-cpython-313/pybedtools/test
 copying pybedtools/test/test_gzip_support.py -> build/lib.linux-i686-cpython-313/pybedtools/test
-copying pybedtools/test/test_contrib.py -> build/lib.linux-i686-cpython-313/pybedtools/test
-copying pybedtools/test/test_issues.py -> build/lib.linux-i686-cpython-313/pybedtools/test
-copying pybedtools/test/test_pathlib.py -> build/lib.linux-i686-cpython-313/pybedtools/test
-copying pybedtools/test/test_helpers.py -> build/lib.linux-i686-cpython-313/pybedtools/test
-copying pybedtools/test/tfuncs.py -> build/lib.linux-i686-cpython-313/pybedtools/test
+copying pybedtools/test/test_1.py -> build/lib.linux-i686-cpython-313/pybedtools/test
+copying pybedtools/test/test_len_leak.py -> build/lib.linux-i686-cpython-313/pybedtools/test
 copying pybedtools/test/__init__.py -> build/lib.linux-i686-cpython-313/pybedtools/test
-copying pybedtools/test/genomepy_integration.py -> build/lib.linux-i686-cpython-313/pybedtools/test
 copying pybedtools/test/regression_tests.py -> build/lib.linux-i686-cpython-313/pybedtools/test
-copying pybedtools/test/test_cbedtools.py -> build/lib.linux-i686-cpython-313/pybedtools/test
+copying pybedtools/test/tfuncs.py -> build/lib.linux-i686-cpython-313/pybedtools/test
+copying pybedtools/test/test_helpers.py -> build/lib.linux-i686-cpython-313/pybedtools/test
+copying pybedtools/test/test_pathlib.py -> build/lib.linux-i686-cpython-313/pybedtools/test
 creating build/lib.linux-i686-cpython-313/pybedtools/contrib
-copying pybedtools/contrib/intersection_matrix.py -> build/lib.linux-i686-cpython-313/pybedtools/contrib
 copying pybedtools/contrib/venn_maker.py -> build/lib.linux-i686-cpython-313/pybedtools/contrib
-copying pybedtools/contrib/plotting.py -> build/lib.linux-i686-cpython-313/pybedtools/contrib
+copying pybedtools/contrib/bigwig.py -> build/lib.linux-i686-cpython-313/pybedtools/contrib
+copying pybedtools/contrib/bigbed.py -> build/lib.linux-i686-cpython-313/pybedtools/contrib
 copying pybedtools/contrib/long_range_interaction.py -> build/lib.linux-i686-cpython-313/pybedtools/contrib
+copying pybedtools/contrib/plotting.py -> build/lib.linux-i686-cpython-313/pybedtools/contrib
 copying pybedtools/contrib/__init__.py -> build/lib.linux-i686-cpython-313/pybedtools/contrib
-copying pybedtools/contrib/bigbed.py -> build/lib.linux-i686-cpython-313/pybedtools/contrib
-copying pybedtools/contrib/bigwig.py -> build/lib.linux-i686-cpython-313/pybedtools/contrib
+copying pybedtools/contrib/intersection_matrix.py -> build/lib.linux-i686-cpython-313/pybedtools/contrib
 creating build/lib.linux-i686-cpython-313/pybedtools/test/data
 copying pybedtools/test/data/__init__.py -> build/lib.linux-i686-cpython-313/pybedtools/test/data
 running egg_info
@@ -1591,74 +1627,74 @@
 copying pybedtools/include/gzstream.cpp -> build/lib.linux-i686-cpython-313/pybedtools/include
 copying pybedtools/include/gzstream.h -> build/lib.linux-i686-cpython-313/pybedtools/include
 copying pybedtools/include/lineFileUtilities.h -> build/lib.linux-i686-cpython-313/pybedtools/include
-copying pybedtools/test/data/mm9.bed12 -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/a.links.html -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/small.bam -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/test.fa -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/v.vcf -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/hg38-problem.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/venn.c.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/y.bam -> build/lib.linux-i686-cpython-313/pybedtools/test/data
 copying pybedtools/test/data/bedpe.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/gdc.50.200.bam.bai -> build/lib.linux-i686-cpython-313/pybedtools/test/data
 copying pybedtools/test/data/gdc.gff -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/gdc.sorted.bam.bai -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/hg38-base.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/a.igv_script -> build/lib.linux-i686-cpython-313/pybedtools/test/data
 copying pybedtools/test/data/snps.bed.gz -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/small.bam -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/venn.c.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/expand_test.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/reads.bam -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/test.fa.fai -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/gdc.othersort.bam -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/m1.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/test_tsses.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/hg38-problem.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/x.bam -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/genome.fa -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/b.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/issue319.vcf.gz -> build/lib.linux-i686-cpython-313/pybedtools/test/data
 copying pybedtools/test/data/164.gtf -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/gdc.1.100.bam -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/example.narrowPeak -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/vcf-stderr-test.vcf -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/tag_test1.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/1000genomes-example.vcf -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/issue_121.bam -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/test.fa -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/c.gff -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/test_bedpe.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/democonfig.yaml -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/venn.b.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
 copying pybedtools/test/data/hg19.gff -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/hg38-base.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/small.fastq -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/v.vcf -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/a.igv_script -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/gdc.sorted.bam -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/gdc.50.200.bam.bai -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
 copying pybedtools/test/data/issue319.out.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/gdc.gff.gz -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/venn.b.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/x.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/gdc.1.100.bam.bai -> build/lib.linux-i686-cpython-313/pybedtools/test/data
 copying pybedtools/test/data/gdc.50.200.bam -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/a.links.html -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/y.bam -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/gdc.cram -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/rmsk.hg18.chr21.small.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/dm3-chr2L-5M.gff.gz -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/exons.gff -> build/lib.linux-i686-cpython-313/pybedtools/test/data
 copying pybedtools/test/data/test_peaks.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/vcf-stderr-test.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/gdc.sorted.bam.bai -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/gdc.1.100.bam -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
 copying pybedtools/test/data/bedpe2.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/1000genomes-example.vcf -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/gdc.gff.gz -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/democonfig.yaml -> build/lib.linux-i686-cpython-313/pybedtools/test/data
 copying pybedtools/test/data/gdc.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/rmsk.hg18.chr21.small.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/x.bam -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/x.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/reads.bam -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/gdc.1.100.bam.bai -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/issue_121.bam -> build/lib.linux-i686-cpython-313/pybedtools/test/data
 copying pybedtools/test/data/gdc.bam -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/issue319.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/multibamcov_test.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/a.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/test_bedpe.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/genome.fa -> build/lib.linux-i686-cpython-313/pybedtools/test/data
 copying pybedtools/test/data/tag_test2.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/vcf-stderr-test.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/d.gff -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/gdc.othersort.bam -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/gdc.cram -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/issue319.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/tag_test1.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/small.fastq -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/example.narrowPeak -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/vcf-stderr-test.vcf -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/gdc.sorted.bam -> build/lib.linux-i686-cpython-313/pybedtools/test/data
 copying pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
-copying pybedtools/test/data/issue319.vcf.gz -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/mm9.bed12 -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/test_tsses.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/m1.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/expand_test.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/exons.gff -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/dm3-chr2L-5M.gff.gz -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/test.fa.fai -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/d.gff -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/c.gff -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/b.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/a.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/multibamcov_test.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
+copying pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> build/lib.linux-i686-cpython-313/pybedtools/test/data
 copying pybedtools/test/gchart-expected.png -> build/lib.linux-i686-cpython-313/pybedtools/test
 copying pybedtools/test/mpl-expected.png -> build/lib.linux-i686-cpython-313/pybedtools/test
 copying pybedtools/test/prevent_open_file_regression -> build/lib.linux-i686-cpython-313/pybedtools/test
@@ -1697,136 +1733,136 @@
 running install_lib
 creating build/bdist.linux-i686/wheel
 creating build/bdist.linux-i686/wheel/pybedtools
-creating build/bdist.linux-i686/wheel/pybedtools/contrib
-copying build/lib.linux-i686-cpython-313/pybedtools/contrib/intersection_matrix.py -> build/bdist.linux-i686/wheel/./pybedtools/contrib
-copying build/lib.linux-i686-cpython-313/pybedtools/contrib/venn_maker.py -> build/bdist.linux-i686/wheel/./pybedtools/contrib
-copying build/lib.linux-i686-cpython-313/pybedtools/contrib/plotting.py -> build/bdist.linux-i686/wheel/./pybedtools/contrib
-copying build/lib.linux-i686-cpython-313/pybedtools/contrib/long_range_interaction.py -> build/bdist.linux-i686/wheel/./pybedtools/contrib
-copying build/lib.linux-i686-cpython-313/pybedtools/contrib/__init__.py -> build/bdist.linux-i686/wheel/./pybedtools/contrib
-copying build/lib.linux-i686-cpython-313/pybedtools/contrib/bigbed.py -> build/bdist.linux-i686/wheel/./pybedtools/contrib
-copying build/lib.linux-i686-cpython-313/pybedtools/contrib/bigwig.py -> build/bdist.linux-i686/wheel/./pybedtools/contrib
-copying build/lib.linux-i686-cpython-313/pybedtools/genome_registry.py -> build/bdist.linux-i686/wheel/./pybedtools
-copying build/lib.linux-i686-cpython-313/pybedtools/cbedtools.pyx -> build/bdist.linux-i686/wheel/./pybedtools
-copying build/lib.linux-i686-cpython-313/pybedtools/helpers.py -> build/bdist.linux-i686/wheel/./pybedtools
-copying build/lib.linux-i686-cpython-313/pybedtools/parallel.py -> build/bdist.linux-i686/wheel/./pybedtools
 copying build/lib.linux-i686-cpython-313/pybedtools/featurefuncs.cpython-313-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./pybedtools
-creating build/bdist.linux-i686/wheel/pybedtools/include
-copying build/lib.linux-i686-cpython-313/pybedtools/include/gzstream.h -> build/bdist.linux-i686/wheel/./pybedtools/include
-copying build/lib.linux-i686-cpython-313/pybedtools/include/lineFileUtilities.h -> build/bdist.linux-i686/wheel/./pybedtools/include
-copying build/lib.linux-i686-cpython-313/pybedtools/include/bedFile.h -> build/bdist.linux-i686/wheel/./pybedtools/include
-copying build/lib.linux-i686-cpython-313/pybedtools/include/bedFile.cpp -> build/bdist.linux-i686/wheel/./pybedtools/include
-copying build/lib.linux-i686-cpython-313/pybedtools/include/gzstream.cpp -> build/bdist.linux-i686/wheel/./pybedtools/include
-copying build/lib.linux-i686-cpython-313/pybedtools/include/fileType.cpp -> build/bdist.linux-i686/wheel/./pybedtools/include
-copying build/lib.linux-i686-cpython-313/pybedtools/include/fileType.h -> build/bdist.linux-i686/wheel/./pybedtools/include
 creating build/bdist.linux-i686/wheel/pybedtools/test
-copying build/lib.linux-i686-cpython-313/pybedtools/test/test_1.py -> build/bdist.linux-i686/wheel/./pybedtools/test
-copying build/lib.linux-i686-cpython-313/pybedtools/test/test_len_leak.py -> build/bdist.linux-i686/wheel/./pybedtools/test
-copying build/lib.linux-i686-cpython-313/pybedtools/test/test_iter.py -> build/bdist.linux-i686/wheel/./pybedtools/test
-copying build/lib.linux-i686-cpython-313/pybedtools/test/test_gzip_support.py -> build/bdist.linux-i686/wheel/./pybedtools/test
-copying build/lib.linux-i686-cpython-313/pybedtools/test/test_merge215.yaml -> build/bdist.linux-i686/wheel/./pybedtools/test
-copying build/lib.linux-i686-cpython-313/pybedtools/test/mpl-expected.png -> build/bdist.linux-i686/wheel/./pybedtools/test
 copying build/lib.linux-i686-cpython-313/pybedtools/test/test_merge227.yaml -> build/bdist.linux-i686/wheel/./pybedtools/test
+copying build/lib.linux-i686-cpython-313/pybedtools/test/test_issues.py -> build/bdist.linux-i686/wheel/./pybedtools/test
 copying build/lib.linux-i686-cpython-313/pybedtools/test/test_shuffle227.yaml -> build/bdist.linux-i686/wheel/./pybedtools/test
 creating build/bdist.linux-i686/wheel/pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/mm9.bed12 -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/a.links.html -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/small.bam -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/test.fa -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/v.vcf -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/hg38-problem.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/venn.c.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/y.bam -> build/bdist.linux-i686/wheel/./pybedtools/test/data
 copying build/lib.linux-i686-cpython-313/pybedtools/test/data/bedpe.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/gdc.50.200.bam.bai -> build/bdist.linux-i686/wheel/./pybedtools/test/data
 copying build/lib.linux-i686-cpython-313/pybedtools/test/data/gdc.gff -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/gdc.sorted.bam.bai -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/hg38-base.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/a.igv_script -> build/bdist.linux-i686/wheel/./pybedtools/test/data
 copying build/lib.linux-i686-cpython-313/pybedtools/test/data/snps.bed.gz -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/small.bam -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/venn.c.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/expand_test.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/reads.bam -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/test.fa.fai -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/gdc.othersort.bam -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/m1.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/test_tsses.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/hg38-problem.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/x.bam -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/genome.fa -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/b.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/issue319.vcf.gz -> build/bdist.linux-i686/wheel/./pybedtools/test/data
 copying build/lib.linux-i686-cpython-313/pybedtools/test/data/164.gtf -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/gdc.1.100.bam -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/example.narrowPeak -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/vcf-stderr-test.vcf -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/tag_test1.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/1000genomes-example.vcf -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/issue_121.bam -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/test.fa -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/c.gff -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/test_bedpe.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/democonfig.yaml -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/venn.b.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
 copying build/lib.linux-i686-cpython-313/pybedtools/test/data/hg19.gff -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/hg38-base.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/small.fastq -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/v.vcf -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/a.igv_script -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/gdc.sorted.bam -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/gdc.50.200.bam.bai -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
 copying build/lib.linux-i686-cpython-313/pybedtools/test/data/issue319.out.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/gdc.gff.gz -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/venn.b.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/x.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/gdc.1.100.bam.bai -> build/bdist.linux-i686/wheel/./pybedtools/test/data
 copying build/lib.linux-i686-cpython-313/pybedtools/test/data/gdc.50.200.bam -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/a.links.html -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/y.bam -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/gdc.cram -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/rmsk.hg18.chr21.small.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/dm3-chr2L-5M.gff.gz -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/exons.gff -> build/bdist.linux-i686/wheel/./pybedtools/test/data
 copying build/lib.linux-i686-cpython-313/pybedtools/test/data/test_peaks.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/vcf-stderr-test.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/gdc.sorted.bam.bai -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/gdc.1.100.bam -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
 copying build/lib.linux-i686-cpython-313/pybedtools/test/data/bedpe2.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/1000genomes-example.vcf -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/gdc.gff.gz -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/democonfig.yaml -> build/bdist.linux-i686/wheel/./pybedtools/test/data
 copying build/lib.linux-i686-cpython-313/pybedtools/test/data/gdc.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/__init__.py -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/rmsk.hg18.chr21.small.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/x.bam -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/x.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/reads.bam -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/gdc.1.100.bam.bai -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/issue_121.bam -> build/bdist.linux-i686/wheel/./pybedtools/test/data
 copying build/lib.linux-i686-cpython-313/pybedtools/test/data/gdc.bam -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/issue319.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/multibamcov_test.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/a.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/test_bedpe.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/genome.fa -> build/bdist.linux-i686/wheel/./pybedtools/test/data
 copying build/lib.linux-i686-cpython-313/pybedtools/test/data/tag_test2.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/vcf-stderr-test.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/d.gff -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/gdc.othersort.bam -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/gdc.cram -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/issue319.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/tag_test1.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/small.fastq -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/example.narrowPeak -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/vcf-stderr-test.vcf -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/gdc.sorted.bam -> build/bdist.linux-i686/wheel/./pybedtools/test/data
 copying build/lib.linux-i686-cpython-313/pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-313/pybedtools/test/data/issue319.vcf.gz -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/mm9.bed12 -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/test_tsses.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/__init__.py -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/m1.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/expand_test.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/exons.gff -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/dm3-chr2L-5M.gff.gz -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/test.fa.fai -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/d.gff -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/c.gff -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/b.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/a.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/multibamcov_test.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-313/pybedtools/test/genomepy_integration.py -> build/bdist.linux-i686/wheel/./pybedtools/test
+copying build/lib.linux-i686-cpython-313/pybedtools/test/test_shuffle215.yaml -> build/bdist.linux-i686/wheel/./pybedtools/test
+copying build/lib.linux-i686-cpython-313/pybedtools/test/test_merge215.yaml -> build/bdist.linux-i686/wheel/./pybedtools/test
+copying build/lib.linux-i686-cpython-313/pybedtools/test/prevent_open_file_regression -> build/bdist.linux-i686/wheel/./pybedtools/test
+copying build/lib.linux-i686-cpython-313/pybedtools/test/test_cbedtools.py -> build/bdist.linux-i686/wheel/./pybedtools/test
 copying build/lib.linux-i686-cpython-313/pybedtools/test/test_contrib.py -> build/bdist.linux-i686/wheel/./pybedtools/test
-copying build/lib.linux-i686-cpython-313/pybedtools/test/test_cases.yaml -> build/bdist.linux-i686/wheel/./pybedtools/test
-copying build/lib.linux-i686-cpython-313/pybedtools/test/test_issues.py -> build/bdist.linux-i686/wheel/./pybedtools/test
+copying build/lib.linux-i686-cpython-313/pybedtools/test/test_iter.py -> build/bdist.linux-i686/wheel/./pybedtools/test
 copying build/lib.linux-i686-cpython-313/pybedtools/test/gchart-expected.png -> build/bdist.linux-i686/wheel/./pybedtools/test
-copying build/lib.linux-i686-cpython-313/pybedtools/test/test_pathlib.py -> build/bdist.linux-i686/wheel/./pybedtools/test
-copying build/lib.linux-i686-cpython-313/pybedtools/test/test_helpers.py -> build/bdist.linux-i686/wheel/./pybedtools/test
-copying build/lib.linux-i686-cpython-313/pybedtools/test/tfuncs.py -> build/bdist.linux-i686/wheel/./pybedtools/test
-copying build/lib.linux-i686-cpython-313/pybedtools/test/prevent_open_file_regression -> build/bdist.linux-i686/wheel/./pybedtools/test
+copying build/lib.linux-i686-cpython-313/pybedtools/test/test_gzip_support.py -> build/bdist.linux-i686/wheel/./pybedtools/test
+copying build/lib.linux-i686-cpython-313/pybedtools/test/mpl-expected.png -> build/bdist.linux-i686/wheel/./pybedtools/test
+copying build/lib.linux-i686-cpython-313/pybedtools/test/test_1.py -> build/bdist.linux-i686/wheel/./pybedtools/test
+copying build/lib.linux-i686-cpython-313/pybedtools/test/test_len_leak.py -> build/bdist.linux-i686/wheel/./pybedtools/test
+copying build/lib.linux-i686-cpython-313/pybedtools/test/test_cases.yaml -> build/bdist.linux-i686/wheel/./pybedtools/test
 copying build/lib.linux-i686-cpython-313/pybedtools/test/__init__.py -> build/bdist.linux-i686/wheel/./pybedtools/test
-copying build/lib.linux-i686-cpython-313/pybedtools/test/genomepy_integration.py -> build/bdist.linux-i686/wheel/./pybedtools/test
 copying build/lib.linux-i686-cpython-313/pybedtools/test/regression_tests.py -> build/bdist.linux-i686/wheel/./pybedtools/test
-copying build/lib.linux-i686-cpython-313/pybedtools/test/test_shuffle215.yaml -> build/bdist.linux-i686/wheel/./pybedtools/test
-copying build/lib.linux-i686-cpython-313/pybedtools/test/test_cbedtools.py -> build/bdist.linux-i686/wheel/./pybedtools/test
-copying build/lib.linux-i686-cpython-313/pybedtools/logger.py -> build/bdist.linux-i686/wheel/./pybedtools
-copying build/lib.linux-i686-cpython-313/pybedtools/version.py -> build/bdist.linux-i686/wheel/./pybedtools
-copying build/lib.linux-i686-cpython-313/pybedtools/cbedtools.cpython-313-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./pybedtools
-copying build/lib.linux-i686-cpython-313/pybedtools/_Window.pyx -> build/bdist.linux-i686/wheel/./pybedtools
+copying build/lib.linux-i686-cpython-313/pybedtools/test/tfuncs.py -> build/bdist.linux-i686/wheel/./pybedtools/test
+copying build/lib.linux-i686-cpython-313/pybedtools/test/test_helpers.py -> build/bdist.linux-i686/wheel/./pybedtools/test
+copying build/lib.linux-i686-cpython-313/pybedtools/test/test_pathlib.py -> build/bdist.linux-i686/wheel/./pybedtools/test
+copying build/lib.linux-i686-cpython-313/pybedtools/featurefuncs.pyx -> build/bdist.linux-i686/wheel/./pybedtools
+copying build/lib.linux-i686-cpython-313/pybedtools/helpers.py -> build/bdist.linux-i686/wheel/./pybedtools
 copying build/lib.linux-i686-cpython-313/pybedtools/stats.py -> build/bdist.linux-i686/wheel/./pybedtools
-copying build/lib.linux-i686-cpython-313/pybedtools/__init__.py -> build/bdist.linux-i686/wheel/./pybedtools
-copying build/lib.linux-i686-cpython-313/pybedtools/cbedtools.pxd -> build/bdist.linux-i686/wheel/./pybedtools
-copying build/lib.linux-i686-cpython-313/pybedtools/settings.py -> build/bdist.linux-i686/wheel/./pybedtools
-copying build/lib.linux-i686-cpython-313/pybedtools/bedtool.py -> build/bdist.linux-i686/wheel/./pybedtools
 copying build/lib.linux-i686-cpython-313/pybedtools/paths.py -> build/bdist.linux-i686/wheel/./pybedtools
+copying build/lib.linux-i686-cpython-313/pybedtools/bedtool.py -> build/bdist.linux-i686/wheel/./pybedtools
+copying build/lib.linux-i686-cpython-313/pybedtools/parallel.py -> build/bdist.linux-i686/wheel/./pybedtools
+creating build/bdist.linux-i686/wheel/pybedtools/contrib
+copying build/lib.linux-i686-cpython-313/pybedtools/contrib/venn_maker.py -> build/bdist.linux-i686/wheel/./pybedtools/contrib
+copying build/lib.linux-i686-cpython-313/pybedtools/contrib/bigwig.py -> build/bdist.linux-i686/wheel/./pybedtools/contrib
+copying build/lib.linux-i686-cpython-313/pybedtools/contrib/bigbed.py -> build/bdist.linux-i686/wheel/./pybedtools/contrib
+copying build/lib.linux-i686-cpython-313/pybedtools/contrib/long_range_interaction.py -> build/bdist.linux-i686/wheel/./pybedtools/contrib
+copying build/lib.linux-i686-cpython-313/pybedtools/contrib/plotting.py -> build/bdist.linux-i686/wheel/./pybedtools/contrib
+copying build/lib.linux-i686-cpython-313/pybedtools/contrib/__init__.py -> build/bdist.linux-i686/wheel/./pybedtools/contrib
+copying build/lib.linux-i686-cpython-313/pybedtools/contrib/intersection_matrix.py -> build/bdist.linux-i686/wheel/./pybedtools/contrib
 copying build/lib.linux-i686-cpython-313/pybedtools/filenames.py -> build/bdist.linux-i686/wheel/./pybedtools
-copying build/lib.linux-i686-cpython-313/pybedtools/featurefuncs.pyx -> build/bdist.linux-i686/wheel/./pybedtools
+copying build/lib.linux-i686-cpython-313/pybedtools/settings.py -> build/bdist.linux-i686/wheel/./pybedtools
+copying build/lib.linux-i686-cpython-313/pybedtools/_Window.pyx -> build/bdist.linux-i686/wheel/./pybedtools
+copying build/lib.linux-i686-cpython-313/pybedtools/version.py -> build/bdist.linux-i686/wheel/./pybedtools
+creating build/bdist.linux-i686/wheel/pybedtools/include
+copying build/lib.linux-i686-cpython-313/pybedtools/include/fileType.cpp -> build/bdist.linux-i686/wheel/./pybedtools/include
+copying build/lib.linux-i686-cpython-313/pybedtools/include/bedFile.cpp -> build/bdist.linux-i686/wheel/./pybedtools/include
+copying build/lib.linux-i686-cpython-313/pybedtools/include/gzstream.cpp -> build/bdist.linux-i686/wheel/./pybedtools/include
+copying build/lib.linux-i686-cpython-313/pybedtools/include/lineFileUtilities.h -> build/bdist.linux-i686/wheel/./pybedtools/include
+copying build/lib.linux-i686-cpython-313/pybedtools/include/bedFile.h -> build/bdist.linux-i686/wheel/./pybedtools/include
+copying build/lib.linux-i686-cpython-313/pybedtools/include/fileType.h -> build/bdist.linux-i686/wheel/./pybedtools/include
+copying build/lib.linux-i686-cpython-313/pybedtools/include/gzstream.h -> build/bdist.linux-i686/wheel/./pybedtools/include
+copying build/lib.linux-i686-cpython-313/pybedtools/logger.py -> build/bdist.linux-i686/wheel/./pybedtools
+copying build/lib.linux-i686-cpython-313/pybedtools/cbedtools.cpython-313-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./pybedtools
+copying build/lib.linux-i686-cpython-313/pybedtools/genome_registry.py -> build/bdist.linux-i686/wheel/./pybedtools
+copying build/lib.linux-i686-cpython-313/pybedtools/cbedtools.pxd -> build/bdist.linux-i686/wheel/./pybedtools
+copying build/lib.linux-i686-cpython-313/pybedtools/cbedtools.pyx -> build/bdist.linux-i686/wheel/./pybedtools
+copying build/lib.linux-i686-cpython-313/pybedtools/__init__.py -> build/bdist.linux-i686/wheel/./pybedtools
 running install_egg_info
 Copying pybedtools.egg-info to build/bdist.linux-i686/wheel/./pybedtools-0.10.0.egg-info
 running install_scripts
 creating build/bdist.linux-i686/wheel/pybedtools-0.10.0.dist-info/WHEEL
-creating '/build/reproducible-path/python-pybedtools-0.10.0/.pybuild/cpython3_3.13_pybedtools/.tmp-jvb7rjtz/pybedtools-0.10.0-cp313-cp313-linux_i686.whl' and adding 'build/bdist.linux-i686/wheel' to it
+creating '/build/reproducible-path/python-pybedtools-0.10.0/.pybuild/cpython3_3.13_pybedtools/.tmp-ntyvvz3d/pybedtools-0.10.0-cp313-cp313-linux_i686.whl' and adding 'build/bdist.linux-i686/wheel' to it
 adding 'pybedtools/_Window.pyx'
 adding 'pybedtools/__init__.py'
 adding 'pybedtools/bedtool.py'
@@ -1974,8 +2010,8 @@
         Please discontinue using this option, or if you still need it,
         file an issue with pypa/setuptools describing your use case.
 
-        This deprecation is overdue, please update your project and remove deprecated
-        calls to avoid build errors in the future.
+        By 2025-Aug-30, you need to update your project and remove deprecated calls
+        or your builds will no longer be supported.
         ********************************************************************************
 
 !!
@@ -1983,39 +2019,39 @@
 running build
 running build_py
 creating build/lib.linux-i686-cpython-312/pybedtools
-copying pybedtools/genome_registry.py -> build/lib.linux-i686-cpython-312/pybedtools
 copying pybedtools/helpers.py -> build/lib.linux-i686-cpython-312/pybedtools
-copying pybedtools/parallel.py -> build/lib.linux-i686-cpython-312/pybedtools
-copying pybedtools/logger.py -> build/lib.linux-i686-cpython-312/pybedtools
-copying pybedtools/version.py -> build/lib.linux-i686-cpython-312/pybedtools
 copying pybedtools/stats.py -> build/lib.linux-i686-cpython-312/pybedtools
-copying pybedtools/__init__.py -> build/lib.linux-i686-cpython-312/pybedtools
-copying pybedtools/settings.py -> build/lib.linux-i686-cpython-312/pybedtools
-copying pybedtools/bedtool.py -> build/lib.linux-i686-cpython-312/pybedtools
 copying pybedtools/paths.py -> build/lib.linux-i686-cpython-312/pybedtools
+copying pybedtools/bedtool.py -> build/lib.linux-i686-cpython-312/pybedtools
+copying pybedtools/parallel.py -> build/lib.linux-i686-cpython-312/pybedtools
 copying pybedtools/filenames.py -> build/lib.linux-i686-cpython-312/pybedtools
+copying pybedtools/settings.py -> build/lib.linux-i686-cpython-312/pybedtools
+copying pybedtools/version.py -> build/lib.linux-i686-cpython-312/pybedtools
+copying pybedtools/logger.py -> build/lib.linux-i686-cpython-312/pybedtools
+copying pybedtools/genome_registry.py -> build/lib.linux-i686-cpython-312/pybedtools
+copying pybedtools/__init__.py -> build/lib.linux-i686-cpython-312/pybedtools
 creating build/lib.linux-i686-cpython-312/pybedtools/test
-copying pybedtools/test/test_1.py -> build/lib.linux-i686-cpython-312/pybedtools/test
-copying pybedtools/test/test_len_leak.py -> build/lib.linux-i686-cpython-312/pybedtools/test
+copying pybedtools/test/test_issues.py -> build/lib.linux-i686-cpython-312/pybedtools/test
+copying pybedtools/test/genomepy_integration.py -> build/lib.linux-i686-cpython-312/pybedtools/test
+copying pybedtools/test/test_cbedtools.py -> build/lib.linux-i686-cpython-312/pybedtools/test
+copying pybedtools/test/test_contrib.py -> build/lib.linux-i686-cpython-312/pybedtools/test
 copying pybedtools/test/test_iter.py -> build/lib.linux-i686-cpython-312/pybedtools/test
 copying pybedtools/test/test_gzip_support.py -> build/lib.linux-i686-cpython-312/pybedtools/test
-copying pybedtools/test/test_contrib.py -> build/lib.linux-i686-cpython-312/pybedtools/test
-copying pybedtools/test/test_issues.py -> build/lib.linux-i686-cpython-312/pybedtools/test
-copying pybedtools/test/test_pathlib.py -> build/lib.linux-i686-cpython-312/pybedtools/test
-copying pybedtools/test/test_helpers.py -> build/lib.linux-i686-cpython-312/pybedtools/test
-copying pybedtools/test/tfuncs.py -> build/lib.linux-i686-cpython-312/pybedtools/test
+copying pybedtools/test/test_1.py -> build/lib.linux-i686-cpython-312/pybedtools/test
+copying pybedtools/test/test_len_leak.py -> build/lib.linux-i686-cpython-312/pybedtools/test
 copying pybedtools/test/__init__.py -> build/lib.linux-i686-cpython-312/pybedtools/test
-copying pybedtools/test/genomepy_integration.py -> build/lib.linux-i686-cpython-312/pybedtools/test
 copying pybedtools/test/regression_tests.py -> build/lib.linux-i686-cpython-312/pybedtools/test
-copying pybedtools/test/test_cbedtools.py -> build/lib.linux-i686-cpython-312/pybedtools/test
+copying pybedtools/test/tfuncs.py -> build/lib.linux-i686-cpython-312/pybedtools/test
+copying pybedtools/test/test_helpers.py -> build/lib.linux-i686-cpython-312/pybedtools/test
+copying pybedtools/test/test_pathlib.py -> build/lib.linux-i686-cpython-312/pybedtools/test
 creating build/lib.linux-i686-cpython-312/pybedtools/contrib
-copying pybedtools/contrib/intersection_matrix.py -> build/lib.linux-i686-cpython-312/pybedtools/contrib
 copying pybedtools/contrib/venn_maker.py -> build/lib.linux-i686-cpython-312/pybedtools/contrib
-copying pybedtools/contrib/plotting.py -> build/lib.linux-i686-cpython-312/pybedtools/contrib
+copying pybedtools/contrib/bigwig.py -> build/lib.linux-i686-cpython-312/pybedtools/contrib
+copying pybedtools/contrib/bigbed.py -> build/lib.linux-i686-cpython-312/pybedtools/contrib
 copying pybedtools/contrib/long_range_interaction.py -> build/lib.linux-i686-cpython-312/pybedtools/contrib
+copying pybedtools/contrib/plotting.py -> build/lib.linux-i686-cpython-312/pybedtools/contrib
 copying pybedtools/contrib/__init__.py -> build/lib.linux-i686-cpython-312/pybedtools/contrib
-copying pybedtools/contrib/bigbed.py -> build/lib.linux-i686-cpython-312/pybedtools/contrib
-copying pybedtools/contrib/bigwig.py -> build/lib.linux-i686-cpython-312/pybedtools/contrib
+copying pybedtools/contrib/intersection_matrix.py -> build/lib.linux-i686-cpython-312/pybedtools/contrib
 creating build/lib.linux-i686-cpython-312/pybedtools/test/data
 copying pybedtools/test/data/__init__.py -> build/lib.linux-i686-cpython-312/pybedtools/test/data
 running egg_info
@@ -2085,74 +2121,74 @@
 copying pybedtools/include/gzstream.cpp -> build/lib.linux-i686-cpython-312/pybedtools/include
 copying pybedtools/include/gzstream.h -> build/lib.linux-i686-cpython-312/pybedtools/include
 copying pybedtools/include/lineFileUtilities.h -> build/lib.linux-i686-cpython-312/pybedtools/include
-copying pybedtools/test/data/mm9.bed12 -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/a.links.html -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/small.bam -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/test.fa -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/v.vcf -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/hg38-problem.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/venn.c.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/y.bam -> build/lib.linux-i686-cpython-312/pybedtools/test/data
 copying pybedtools/test/data/bedpe.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/gdc.50.200.bam.bai -> build/lib.linux-i686-cpython-312/pybedtools/test/data
 copying pybedtools/test/data/gdc.gff -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/gdc.sorted.bam.bai -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/hg38-base.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/a.igv_script -> build/lib.linux-i686-cpython-312/pybedtools/test/data
 copying pybedtools/test/data/snps.bed.gz -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/small.bam -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/venn.c.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/expand_test.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/reads.bam -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/test.fa.fai -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/gdc.othersort.bam -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/m1.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/test_tsses.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/hg38-problem.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/x.bam -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/genome.fa -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/b.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/issue319.vcf.gz -> build/lib.linux-i686-cpython-312/pybedtools/test/data
 copying pybedtools/test/data/164.gtf -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/gdc.1.100.bam -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/example.narrowPeak -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/vcf-stderr-test.vcf -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/tag_test1.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/1000genomes-example.vcf -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/issue_121.bam -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/test.fa -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/c.gff -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/test_bedpe.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/democonfig.yaml -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/venn.b.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
 copying pybedtools/test/data/hg19.gff -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/hg38-base.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/small.fastq -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/v.vcf -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/a.igv_script -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/gdc.sorted.bam -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/gdc.50.200.bam.bai -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
 copying pybedtools/test/data/issue319.out.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/gdc.gff.gz -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/venn.b.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/x.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/gdc.1.100.bam.bai -> build/lib.linux-i686-cpython-312/pybedtools/test/data
 copying pybedtools/test/data/gdc.50.200.bam -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/a.links.html -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/y.bam -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/gdc.cram -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/rmsk.hg18.chr21.small.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/dm3-chr2L-5M.gff.gz -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/exons.gff -> build/lib.linux-i686-cpython-312/pybedtools/test/data
 copying pybedtools/test/data/test_peaks.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/vcf-stderr-test.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/gdc.sorted.bam.bai -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/gdc.1.100.bam -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
 copying pybedtools/test/data/bedpe2.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/1000genomes-example.vcf -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/gdc.gff.gz -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/democonfig.yaml -> build/lib.linux-i686-cpython-312/pybedtools/test/data
 copying pybedtools/test/data/gdc.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/rmsk.hg18.chr21.small.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/x.bam -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/x.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/reads.bam -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/gdc.1.100.bam.bai -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/issue_121.bam -> build/lib.linux-i686-cpython-312/pybedtools/test/data
 copying pybedtools/test/data/gdc.bam -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/issue319.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/multibamcov_test.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/a.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/test_bedpe.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/genome.fa -> build/lib.linux-i686-cpython-312/pybedtools/test/data
 copying pybedtools/test/data/tag_test2.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/vcf-stderr-test.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/d.gff -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/gdc.othersort.bam -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/gdc.cram -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/issue319.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/tag_test1.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/small.fastq -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/example.narrowPeak -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/vcf-stderr-test.vcf -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/gdc.sorted.bam -> build/lib.linux-i686-cpython-312/pybedtools/test/data
 copying pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
-copying pybedtools/test/data/issue319.vcf.gz -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/mm9.bed12 -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/test_tsses.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/m1.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/expand_test.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/exons.gff -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/dm3-chr2L-5M.gff.gz -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/test.fa.fai -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/d.gff -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/c.gff -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/b.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/a.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/multibamcov_test.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
+copying pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> build/lib.linux-i686-cpython-312/pybedtools/test/data
 copying pybedtools/test/gchart-expected.png -> build/lib.linux-i686-cpython-312/pybedtools/test
 copying pybedtools/test/mpl-expected.png -> build/lib.linux-i686-cpython-312/pybedtools/test
 copying pybedtools/test/prevent_open_file_regression -> build/lib.linux-i686-cpython-312/pybedtools/test
@@ -2181,138 +2217,138 @@
 running install_lib
 creating build/bdist.linux-i686/wheel
 creating build/bdist.linux-i686/wheel/pybedtools
-creating build/bdist.linux-i686/wheel/pybedtools/contrib
-copying build/lib.linux-i686-cpython-312/pybedtools/contrib/intersection_matrix.py -> build/bdist.linux-i686/wheel/./pybedtools/contrib
-copying build/lib.linux-i686-cpython-312/pybedtools/contrib/venn_maker.py -> build/bdist.linux-i686/wheel/./pybedtools/contrib
-copying build/lib.linux-i686-cpython-312/pybedtools/contrib/plotting.py -> build/bdist.linux-i686/wheel/./pybedtools/contrib
-copying build/lib.linux-i686-cpython-312/pybedtools/contrib/long_range_interaction.py -> build/bdist.linux-i686/wheel/./pybedtools/contrib
-copying build/lib.linux-i686-cpython-312/pybedtools/contrib/__init__.py -> build/bdist.linux-i686/wheel/./pybedtools/contrib
-copying build/lib.linux-i686-cpython-312/pybedtools/contrib/bigbed.py -> build/bdist.linux-i686/wheel/./pybedtools/contrib
-copying build/lib.linux-i686-cpython-312/pybedtools/contrib/bigwig.py -> build/bdist.linux-i686/wheel/./pybedtools/contrib
-copying build/lib.linux-i686-cpython-312/pybedtools/genome_registry.py -> build/bdist.linux-i686/wheel/./pybedtools
-copying build/lib.linux-i686-cpython-312/pybedtools/featurefuncs.cpp -> build/bdist.linux-i686/wheel/./pybedtools
-copying build/lib.linux-i686-cpython-312/pybedtools/cbedtools.pyx -> build/bdist.linux-i686/wheel/./pybedtools
-copying build/lib.linux-i686-cpython-312/pybedtools/helpers.py -> build/bdist.linux-i686/wheel/./pybedtools
-copying build/lib.linux-i686-cpython-312/pybedtools/parallel.py -> build/bdist.linux-i686/wheel/./pybedtools
-copying build/lib.linux-i686-cpython-312/pybedtools/cbedtools.cpp -> build/bdist.linux-i686/wheel/./pybedtools
-creating build/bdist.linux-i686/wheel/pybedtools/include
-copying build/lib.linux-i686-cpython-312/pybedtools/include/gzstream.h -> build/bdist.linux-i686/wheel/./pybedtools/include
-copying build/lib.linux-i686-cpython-312/pybedtools/include/lineFileUtilities.h -> build/bdist.linux-i686/wheel/./pybedtools/include
-copying build/lib.linux-i686-cpython-312/pybedtools/include/bedFile.h -> build/bdist.linux-i686/wheel/./pybedtools/include
-copying build/lib.linux-i686-cpython-312/pybedtools/include/bedFile.cpp -> build/bdist.linux-i686/wheel/./pybedtools/include
-copying build/lib.linux-i686-cpython-312/pybedtools/include/gzstream.cpp -> build/bdist.linux-i686/wheel/./pybedtools/include
-copying build/lib.linux-i686-cpython-312/pybedtools/include/fileType.cpp -> build/bdist.linux-i686/wheel/./pybedtools/include
-copying build/lib.linux-i686-cpython-312/pybedtools/include/fileType.h -> build/bdist.linux-i686/wheel/./pybedtools/include
 creating build/bdist.linux-i686/wheel/pybedtools/test
-copying build/lib.linux-i686-cpython-312/pybedtools/test/test_1.py -> build/bdist.linux-i686/wheel/./pybedtools/test
-copying build/lib.linux-i686-cpython-312/pybedtools/test/test_len_leak.py -> build/bdist.linux-i686/wheel/./pybedtools/test
-copying build/lib.linux-i686-cpython-312/pybedtools/test/test_iter.py -> build/bdist.linux-i686/wheel/./pybedtools/test
-copying build/lib.linux-i686-cpython-312/pybedtools/test/test_gzip_support.py -> build/bdist.linux-i686/wheel/./pybedtools/test
-copying build/lib.linux-i686-cpython-312/pybedtools/test/test_merge215.yaml -> build/bdist.linux-i686/wheel/./pybedtools/test
-copying build/lib.linux-i686-cpython-312/pybedtools/test/mpl-expected.png -> build/bdist.linux-i686/wheel/./pybedtools/test
 copying build/lib.linux-i686-cpython-312/pybedtools/test/test_merge227.yaml -> build/bdist.linux-i686/wheel/./pybedtools/test
+copying build/lib.linux-i686-cpython-312/pybedtools/test/test_issues.py -> build/bdist.linux-i686/wheel/./pybedtools/test
 copying build/lib.linux-i686-cpython-312/pybedtools/test/test_shuffle227.yaml -> build/bdist.linux-i686/wheel/./pybedtools/test
 creating build/bdist.linux-i686/wheel/pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/mm9.bed12 -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/a.links.html -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/small.bam -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/test.fa -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/v.vcf -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/hg38-problem.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/venn.c.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/y.bam -> build/bdist.linux-i686/wheel/./pybedtools/test/data
 copying build/lib.linux-i686-cpython-312/pybedtools/test/data/bedpe.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/gdc.50.200.bam.bai -> build/bdist.linux-i686/wheel/./pybedtools/test/data
 copying build/lib.linux-i686-cpython-312/pybedtools/test/data/gdc.gff -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/gdc.sorted.bam.bai -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/hg38-base.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/a.igv_script -> build/bdist.linux-i686/wheel/./pybedtools/test/data
 copying build/lib.linux-i686-cpython-312/pybedtools/test/data/snps.bed.gz -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/small.bam -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/venn.c.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/expand_test.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/reads.bam -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/test.fa.fai -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/gdc.othersort.bam -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/m1.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/test_tsses.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/hg38-problem.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/x.bam -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/genome.fa -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/b.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/issue319.vcf.gz -> build/bdist.linux-i686/wheel/./pybedtools/test/data
 copying build/lib.linux-i686-cpython-312/pybedtools/test/data/164.gtf -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/gdc.1.100.bam -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/example.narrowPeak -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/vcf-stderr-test.vcf -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/tag_test1.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/1000genomes-example.vcf -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/issue_121.bam -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/test.fa -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/c.gff -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/test_bedpe.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/democonfig.yaml -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/venn.b.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
 copying build/lib.linux-i686-cpython-312/pybedtools/test/data/hg19.gff -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/hg38-base.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/small.fastq -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/v.vcf -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/a.igv_script -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/gdc.sorted.bam -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/gdc.50.200.bam.bai -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
 copying build/lib.linux-i686-cpython-312/pybedtools/test/data/issue319.out.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/gdc.gff.gz -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/venn.b.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/x.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/gdc.1.100.bam.bai -> build/bdist.linux-i686/wheel/./pybedtools/test/data
 copying build/lib.linux-i686-cpython-312/pybedtools/test/data/gdc.50.200.bam -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/a.links.html -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/y.bam -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/gdc.cram -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/rmsk.hg18.chr21.small.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/dm3-chr2L-5M.gff.gz -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/exons.gff -> build/bdist.linux-i686/wheel/./pybedtools/test/data
 copying build/lib.linux-i686-cpython-312/pybedtools/test/data/test_peaks.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/vcf-stderr-test.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/gdc.sorted.bam.bai -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/gdc.1.100.bam -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
 copying build/lib.linux-i686-cpython-312/pybedtools/test/data/bedpe2.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/1000genomes-example.vcf -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/gdc.gff.gz -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/democonfig.yaml -> build/bdist.linux-i686/wheel/./pybedtools/test/data
 copying build/lib.linux-i686-cpython-312/pybedtools/test/data/gdc.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/__init__.py -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/rmsk.hg18.chr21.small.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/x.bam -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/x.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/reads.bam -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/gdc.1.100.bam.bai -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/issue_121.bam -> build/bdist.linux-i686/wheel/./pybedtools/test/data
 copying build/lib.linux-i686-cpython-312/pybedtools/test/data/gdc.bam -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/issue319.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/multibamcov_test.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/a.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/test_bedpe.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/genome.fa -> build/bdist.linux-i686/wheel/./pybedtools/test/data
 copying build/lib.linux-i686-cpython-312/pybedtools/test/data/tag_test2.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/vcf-stderr-test.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/d.gff -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/gdc.othersort.bam -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/gdc.cram -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/issue319.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/tag_test1.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/small.fastq -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/example.narrowPeak -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/vcf-stderr-test.vcf -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/gdc.sorted.bam -> build/bdist.linux-i686/wheel/./pybedtools/test/data
 copying build/lib.linux-i686-cpython-312/pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
-copying build/lib.linux-i686-cpython-312/pybedtools/test/data/issue319.vcf.gz -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/mm9.bed12 -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/test_tsses.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/__init__.py -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/m1.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/expand_test.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/exons.gff -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/dm3-chr2L-5M.gff.gz -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/test.fa.fai -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/d.gff -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/c.gff -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/b.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/a.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/multibamcov_test.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> build/bdist.linux-i686/wheel/./pybedtools/test/data
+copying build/lib.linux-i686-cpython-312/pybedtools/test/genomepy_integration.py -> build/bdist.linux-i686/wheel/./pybedtools/test
+copying build/lib.linux-i686-cpython-312/pybedtools/test/test_shuffle215.yaml -> build/bdist.linux-i686/wheel/./pybedtools/test
+copying build/lib.linux-i686-cpython-312/pybedtools/test/test_merge215.yaml -> build/bdist.linux-i686/wheel/./pybedtools/test
+copying build/lib.linux-i686-cpython-312/pybedtools/test/prevent_open_file_regression -> build/bdist.linux-i686/wheel/./pybedtools/test
+copying build/lib.linux-i686-cpython-312/pybedtools/test/test_cbedtools.py -> build/bdist.linux-i686/wheel/./pybedtools/test
 copying build/lib.linux-i686-cpython-312/pybedtools/test/test_contrib.py -> build/bdist.linux-i686/wheel/./pybedtools/test
-copying build/lib.linux-i686-cpython-312/pybedtools/test/test_cases.yaml -> build/bdist.linux-i686/wheel/./pybedtools/test
-copying build/lib.linux-i686-cpython-312/pybedtools/test/test_issues.py -> build/bdist.linux-i686/wheel/./pybedtools/test
+copying build/lib.linux-i686-cpython-312/pybedtools/test/test_iter.py -> build/bdist.linux-i686/wheel/./pybedtools/test
 copying build/lib.linux-i686-cpython-312/pybedtools/test/gchart-expected.png -> build/bdist.linux-i686/wheel/./pybedtools/test
-copying build/lib.linux-i686-cpython-312/pybedtools/test/test_pathlib.py -> build/bdist.linux-i686/wheel/./pybedtools/test
-copying build/lib.linux-i686-cpython-312/pybedtools/test/test_helpers.py -> build/bdist.linux-i686/wheel/./pybedtools/test
-copying build/lib.linux-i686-cpython-312/pybedtools/test/tfuncs.py -> build/bdist.linux-i686/wheel/./pybedtools/test
-copying build/lib.linux-i686-cpython-312/pybedtools/test/prevent_open_file_regression -> build/bdist.linux-i686/wheel/./pybedtools/test
+copying build/lib.linux-i686-cpython-312/pybedtools/test/test_gzip_support.py -> build/bdist.linux-i686/wheel/./pybedtools/test
+copying build/lib.linux-i686-cpython-312/pybedtools/test/mpl-expected.png -> build/bdist.linux-i686/wheel/./pybedtools/test
+copying build/lib.linux-i686-cpython-312/pybedtools/test/test_1.py -> build/bdist.linux-i686/wheel/./pybedtools/test
+copying build/lib.linux-i686-cpython-312/pybedtools/test/test_len_leak.py -> build/bdist.linux-i686/wheel/./pybedtools/test
+copying build/lib.linux-i686-cpython-312/pybedtools/test/test_cases.yaml -> build/bdist.linux-i686/wheel/./pybedtools/test
 copying build/lib.linux-i686-cpython-312/pybedtools/test/__init__.py -> build/bdist.linux-i686/wheel/./pybedtools/test
-copying build/lib.linux-i686-cpython-312/pybedtools/test/genomepy_integration.py -> build/bdist.linux-i686/wheel/./pybedtools/test
 copying build/lib.linux-i686-cpython-312/pybedtools/test/regression_tests.py -> build/bdist.linux-i686/wheel/./pybedtools/test
-copying build/lib.linux-i686-cpython-312/pybedtools/test/test_shuffle215.yaml -> build/bdist.linux-i686/wheel/./pybedtools/test
-copying build/lib.linux-i686-cpython-312/pybedtools/test/test_cbedtools.py -> build/bdist.linux-i686/wheel/./pybedtools/test
-copying build/lib.linux-i686-cpython-312/pybedtools/logger.py -> build/bdist.linux-i686/wheel/./pybedtools
-copying build/lib.linux-i686-cpython-312/pybedtools/version.py -> build/bdist.linux-i686/wheel/./pybedtools
-copying build/lib.linux-i686-cpython-312/pybedtools/cbedtools.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./pybedtools
-copying build/lib.linux-i686-cpython-312/pybedtools/_Window.pyx -> build/bdist.linux-i686/wheel/./pybedtools
+copying build/lib.linux-i686-cpython-312/pybedtools/test/tfuncs.py -> build/bdist.linux-i686/wheel/./pybedtools/test
+copying build/lib.linux-i686-cpython-312/pybedtools/test/test_helpers.py -> build/bdist.linux-i686/wheel/./pybedtools/test
+copying build/lib.linux-i686-cpython-312/pybedtools/test/test_pathlib.py -> build/bdist.linux-i686/wheel/./pybedtools/test
+copying build/lib.linux-i686-cpython-312/pybedtools/featurefuncs.pyx -> build/bdist.linux-i686/wheel/./pybedtools
+copying build/lib.linux-i686-cpython-312/pybedtools/helpers.py -> build/bdist.linux-i686/wheel/./pybedtools
 copying build/lib.linux-i686-cpython-312/pybedtools/stats.py -> build/bdist.linux-i686/wheel/./pybedtools
-copying build/lib.linux-i686-cpython-312/pybedtools/featurefuncs.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./pybedtools
-copying build/lib.linux-i686-cpython-312/pybedtools/__init__.py -> build/bdist.linux-i686/wheel/./pybedtools
-copying build/lib.linux-i686-cpython-312/pybedtools/cbedtools.pxd -> build/bdist.linux-i686/wheel/./pybedtools
-copying build/lib.linux-i686-cpython-312/pybedtools/settings.py -> build/bdist.linux-i686/wheel/./pybedtools
-copying build/lib.linux-i686-cpython-312/pybedtools/bedtool.py -> build/bdist.linux-i686/wheel/./pybedtools
 copying build/lib.linux-i686-cpython-312/pybedtools/paths.py -> build/bdist.linux-i686/wheel/./pybedtools
+copying build/lib.linux-i686-cpython-312/pybedtools/bedtool.py -> build/bdist.linux-i686/wheel/./pybedtools
+copying build/lib.linux-i686-cpython-312/pybedtools/parallel.py -> build/bdist.linux-i686/wheel/./pybedtools
+copying build/lib.linux-i686-cpython-312/pybedtools/featurefuncs.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./pybedtools
+creating build/bdist.linux-i686/wheel/pybedtools/contrib
+copying build/lib.linux-i686-cpython-312/pybedtools/contrib/venn_maker.py -> build/bdist.linux-i686/wheel/./pybedtools/contrib
+copying build/lib.linux-i686-cpython-312/pybedtools/contrib/bigwig.py -> build/bdist.linux-i686/wheel/./pybedtools/contrib
+copying build/lib.linux-i686-cpython-312/pybedtools/contrib/bigbed.py -> build/bdist.linux-i686/wheel/./pybedtools/contrib
+copying build/lib.linux-i686-cpython-312/pybedtools/contrib/long_range_interaction.py -> build/bdist.linux-i686/wheel/./pybedtools/contrib
+copying build/lib.linux-i686-cpython-312/pybedtools/contrib/plotting.py -> build/bdist.linux-i686/wheel/./pybedtools/contrib
+copying build/lib.linux-i686-cpython-312/pybedtools/contrib/__init__.py -> build/bdist.linux-i686/wheel/./pybedtools/contrib
+copying build/lib.linux-i686-cpython-312/pybedtools/contrib/intersection_matrix.py -> build/bdist.linux-i686/wheel/./pybedtools/contrib
 copying build/lib.linux-i686-cpython-312/pybedtools/filenames.py -> build/bdist.linux-i686/wheel/./pybedtools
-copying build/lib.linux-i686-cpython-312/pybedtools/featurefuncs.pyx -> build/bdist.linux-i686/wheel/./pybedtools
+copying build/lib.linux-i686-cpython-312/pybedtools/settings.py -> build/bdist.linux-i686/wheel/./pybedtools
+copying build/lib.linux-i686-cpython-312/pybedtools/_Window.pyx -> build/bdist.linux-i686/wheel/./pybedtools
+copying build/lib.linux-i686-cpython-312/pybedtools/version.py -> build/bdist.linux-i686/wheel/./pybedtools
+creating build/bdist.linux-i686/wheel/pybedtools/include
+copying build/lib.linux-i686-cpython-312/pybedtools/include/fileType.cpp -> build/bdist.linux-i686/wheel/./pybedtools/include
+copying build/lib.linux-i686-cpython-312/pybedtools/include/bedFile.cpp -> build/bdist.linux-i686/wheel/./pybedtools/include
+copying build/lib.linux-i686-cpython-312/pybedtools/include/gzstream.cpp -> build/bdist.linux-i686/wheel/./pybedtools/include
+copying build/lib.linux-i686-cpython-312/pybedtools/include/lineFileUtilities.h -> build/bdist.linux-i686/wheel/./pybedtools/include
+copying build/lib.linux-i686-cpython-312/pybedtools/include/bedFile.h -> build/bdist.linux-i686/wheel/./pybedtools/include
+copying build/lib.linux-i686-cpython-312/pybedtools/include/fileType.h -> build/bdist.linux-i686/wheel/./pybedtools/include
+copying build/lib.linux-i686-cpython-312/pybedtools/include/gzstream.h -> build/bdist.linux-i686/wheel/./pybedtools/include
+copying build/lib.linux-i686-cpython-312/pybedtools/logger.py -> build/bdist.linux-i686/wheel/./pybedtools
+copying build/lib.linux-i686-cpython-312/pybedtools/genome_registry.py -> build/bdist.linux-i686/wheel/./pybedtools
+copying build/lib.linux-i686-cpython-312/pybedtools/cbedtools.pxd -> build/bdist.linux-i686/wheel/./pybedtools
+copying build/lib.linux-i686-cpython-312/pybedtools/cbedtools.pyx -> build/bdist.linux-i686/wheel/./pybedtools
+copying build/lib.linux-i686-cpython-312/pybedtools/cbedtools.cpp -> build/bdist.linux-i686/wheel/./pybedtools
+copying build/lib.linux-i686-cpython-312/pybedtools/__init__.py -> build/bdist.linux-i686/wheel/./pybedtools
+copying build/lib.linux-i686-cpython-312/pybedtools/featurefuncs.cpp -> build/bdist.linux-i686/wheel/./pybedtools
+copying build/lib.linux-i686-cpython-312/pybedtools/cbedtools.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./pybedtools
 running install_egg_info
 Copying pybedtools.egg-info to build/bdist.linux-i686/wheel/./pybedtools-0.10.0.egg-info
 running install_scripts
 creating build/bdist.linux-i686/wheel/pybedtools-0.10.0.dist-info/WHEEL
-creating '/build/reproducible-path/python-pybedtools-0.10.0/.pybuild/cpython3_3.12_pybedtools/.tmp-6ha4ng_i/pybedtools-0.10.0-cp312-cp312-linux_i686.whl' and adding 'build/bdist.linux-i686/wheel' to it
+creating '/build/reproducible-path/python-pybedtools-0.10.0/.pybuild/cpython3_3.12_pybedtools/.tmp-__hm4roi/pybedtools-0.10.0-cp312-cp312-linux_i686.whl' and adding 'build/bdist.linux-i686/wheel' to it
 adding 'pybedtools/_Window.pyx'
 adding 'pybedtools/__init__.py'
 adding 'pybedtools/bedtool.py'
@@ -2452,7 +2488,7 @@
 making output directory... done
 Converting `source_suffix = '.rst'` to `source_suffix = {'.rst': 'restructuredtext'}`.
 [autosummary] generating autosummary for: 3-brief-examples.rst, FAQs.rst, autodoc_source.rst, changes.rst, create-a-bedtool-tutorial.rst, default-arguments.rst, each.rst, filtering.rst, flow-of-commands.rst, history.rst, ..., topical-create-a-bedtool.rst, topical-design-principles.rst, topical-documentation-contents.rst, topical-genome.rst, topical-iterators.rst, topical-low-level-ops.rst, topical-random.rst, topical-saving.rst, topical-wrapping.rst, tutorial-contents.rst
-Matplotlib created a temporary cache directory at /tmp/matplotlib-7o8digvw because the default path (/nonexistent/first-build/.cache/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
+Matplotlib created a temporary cache directory at /tmp/matplotlib-gc844zp0 because the default path (/nonexistent/second-build/.cache/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
 [autosummary] generating autosummary for: /build/reproducible-path/python-pybedtools-0.10.0/docs/source/autodocs/pybedtools.bedtool.BedTool.absolute_distance.rst, /build/reproducible-path/python-pybedtools-0.10.0/docs/source/autodocs/pybedtools.bedtool.BedTool.all_hits.rst, /build/reproducible-path/python-pybedtools-0.10.0/docs/source/autodocs/pybedtools.bedtool.BedTool.annotate.rst, /build/reproducible-path/python-pybedtools-0.10.0/docs/source/autodocs/pybedtools.bedtool.BedTool.any_hits.rst, /build/reproducible-path/python-pybedtools-0.10.0/docs/source/autodocs/pybedtools.bedtool.BedTool.as_intervalfile.rst, /build/reproducible-path/python-pybedtools-0.10.0/docs/source/autodocs/pybedtools.bedtool.BedTool.at.rst, /build/reproducible-path/python-pybedtools-0.10.0/docs/source/autodocs/pybedtools.bedtool.BedTool.bam_to_bed.rst, /build/reproducible-path/python-pybedtools-0.10.0/docs/source/autodocs/pybedtools.bedtool.BedTool.bam_to_fastq.rst, /build/reproducible-path/python-pybedtools-0.10.0/docs/source/autodocs/pybedtools.bedtool.BedTool.bed6.rst, /build/reproducible-path/python-pybedtools-0.10.0/docs/source/autodocs/pybedtools.bedtool.BedTool.bedpe_to_bam.rst, ..., /build/reproducible-path/python-pybedtools-0.10.0/docs/source/autodocs/pybedtools.helpers.set_tempdir.rst, /build/reproducible-path/python-pybedtools-0.10.0/docs/source/autodocs/pybedtools.parallel.parallel_apply.rst, /build/reproducible-path/python-pybedtools-0.10.0/docs/source/pybedtools.featurefuncs.add_color.rst, /build/reproducible-path/python-pybedtools-0.10.0/docs/source/pybedtools.featurefuncs.bedgraph_scale.rst, /build/reproducible-path/python-pybedtools-0.10.0/docs/source/pybedtools.featurefuncs.extend_fields.rst, /build/reproducible-path/python-pybedtools-0.10.0/docs/source/pybedtools.featurefuncs.five_prime.rst, /build/reproducible-path/python-pybedtools-0.10.0/docs/source/pybedtools.featurefuncs.greater_than.rst, /build/reproducible-path/python-pybedtools-0.10.0/docs/source/pybedtools.featurefuncs.less_than.rst, /build/reproducible-path/python-pybedtools-0.10.0/docs/source/pybedtools.featurefuncs.normalized_to_length.rst, /build/reproducible-path/python-pybedtools-0.10.0/docs/source/pybedtools.featurefuncs.three_prime.rst
 building [mo]: targets for 0 po files that are out of date
 writing output... 
@@ -2760,8 +2796,8 @@
 preparing documents... done
 copying assets... 
 copying static files... 
-Writing evaluated template result to /build/reproducible-path/python-pybedtools-0.10.0/docs/html/_static/basic.css
 Writing evaluated template result to /build/reproducible-path/python-pybedtools-0.10.0/docs/html/_static/documentation_options.js
+Writing evaluated template result to /build/reproducible-path/python-pybedtools-0.10.0/docs/html/_static/basic.css
 Writing evaluated template result to /build/reproducible-path/python-pybedtools-0.10.0/docs/html/_static/language_data.js
 Writing evaluated template result to /build/reproducible-path/python-pybedtools-0.10.0/docs/html/_static/alabaster.css
 copying static files: done
@@ -2981,7 +3017,7 @@
 ....................................................................     [ 99%]
 pybedtools/test/test_pathlib.py ...                                      [100%]
 
-================ 506 passed, 2 deselected, 3 xfailed in 16.15s =================
+================ 506 passed, 2 deselected, 3 xfailed in 33.60s =================
 I: pybuild pybuild:334: cd /build/reproducible-path/python-pybedtools-0.10.0/docs ; PYTHONPATH=/build/reproducible-path/python-pybedtools-0.10.0/.pybuild/cpython3_3.13_pybedtools/build python3.13 -m sphinx -b doctest -d build/doctrees   source build/doctest
 Running Sphinx v8.1.3
 loading translations [en]... done
@@ -3762,7 +3798,7 @@
 ....................................................................     [ 99%]
 pybedtools/test/test_pathlib.py ...                                      [100%]
 
-================ 506 passed, 2 deselected, 3 xfailed in 16.10s =================
+================ 506 passed, 2 deselected, 3 xfailed in 36.86s =================
 I: pybuild pybuild:334: cd /build/reproducible-path/python-pybedtools-0.10.0/docs ; PYTHONPATH=/build/reproducible-path/python-pybedtools-0.10.0/.pybuild/cpython3_3.12_pybedtools/build python3.12 -m sphinx -b doctest -d build/doctrees   source build/doctest
 Running Sphinx v8.1.3
 loading translations [en]... done
@@ -4555,10 +4591,10 @@
 dpkg-gencontrol: warning: Depends field of package pybedtools-bin: substitution variable ${python3:Depends} used, but is not defined
    dh_md5sums -O--buildsystem=pybuild
    dh_builddeb -O--buildsystem=pybuild
-dpkg-deb: building package 'pybedtools-bin' in '../pybedtools-bin_0.10.0-4_all.deb'.
 dpkg-deb: building package 'python3-pybedtools-dbgsym' in '../python3-pybedtools-dbgsym_0.10.0-4_i386.deb'.
-dpkg-deb: building package 'python3-pybedtools' in '../python3-pybedtools_0.10.0-4_i386.deb'.
+dpkg-deb: building package 'pybedtools-bin' in '../pybedtools-bin_0.10.0-4_all.deb'.
 dpkg-deb: building package 'python-pybedtools-doc' in '../python-pybedtools-doc_0.10.0-4_all.deb'.
+dpkg-deb: building package 'python3-pybedtools' in '../python3-pybedtools_0.10.0-4_i386.deb'.
  dpkg-genbuildinfo --build=binary -O../python-pybedtools_0.10.0-4_i386.buildinfo
  dpkg-genchanges --build=binary -O../python-pybedtools_0.10.0-4_i386.changes
 dpkg-genchanges: info: binary-only upload (no source code included)
@@ -4567,12 +4603,14 @@
 dpkg-buildpackage: info: binary-only upload (no source included)
 dpkg-genchanges: info: not including original source code in upload
 I: copying local configuration
+I: user script /srv/workspace/pbuilder/61238/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/61238/tmp/hooks/B01_cleanup finished
 I: unmounting dev/ptmx filesystem
 I: unmounting dev/pts filesystem
 I: unmounting dev/shm filesystem
 I: unmounting proc filesystem
 I: unmounting sys filesystem
 I: cleaning the build env 
-I: removing directory /srv/workspace/pbuilder/85583 and its subdirectories
-I: Current time: Fri Jan 30 02:04:34 -12 2026
-I: pbuilder-time-stamp: 1769781874
+I: removing directory /srv/workspace/pbuilder/61238 and its subdirectories
+I: Current time: Sat Dec 28 21:51:39 +14 2024
+I: pbuilder-time-stamp: 1735372299