Diff of the two buildlogs:

--
--- b1/build.log	2024-03-16 11:57:06.454303449 +0000
+++ b2/build.log	2024-03-16 12:05:02.726000725 +0000
@@ -1,6 +1,6 @@
 I: pbuilder: network access will be disabled during build
-I: Current time: Fri Mar 15 23:40:05 -12 2024
-I: pbuilder-time-stamp: 1710589205
+I: Current time: Sat Apr 19 08:20:07 +14 2025
+I: pbuilder-time-stamp: 1745000407
 I: Building the build Environment
 I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
 I: copying local configuration
@@ -33,54 +33,86 @@
 dpkg-source: info: applying skip-equals-on-vector.patch
 I: Not using root during the build.
 I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/4409/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/17053/tmp/hooks/D01_modify_environment starting
+debug: Running on ionos6-i386.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+'/bin/sh' -> '/bin/bash'
+lrwxrwxrwx 1 root root 9 Apr 18 18:20 /bin/sh -> /bin/bash
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/17053/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/17053/tmp/hooks/D02_print_environment starting
 I: set
-  BUILDDIR='/build/reproducible-path'
-  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
-  BUILDUSERNAME='pbuilder1'
-  BUILD_ARCH='i386'
-  DEBIAN_FRONTEND='noninteractive'
-  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8 '
-  DISTRIBUTION='unstable'
-  HOME='/root'
-  HOST_ARCH='i386'
+  BASH=/bin/sh
+  BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
+  BASH_ALIASES=()
+  BASH_ARGC=()
+  BASH_ARGV=()
+  BASH_CMDS=()
+  BASH_LINENO=([0]="12" [1]="0")
+  BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
+  BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
+  BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="i686-pc-linux-gnu")
+  BASH_VERSION='5.2.21(1)-release'
+  BUILDDIR=/build/reproducible-path
+  BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+  BUILDUSERNAME=pbuilder2
+  BUILD_ARCH=i386
+  DEBIAN_FRONTEND=noninteractive
+  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15 '
+  DIRSTACK=()
+  DISTRIBUTION=unstable
+  EUID=0
+  FUNCNAME=([0]="Echo" [1]="main")
+  GROUPS=()
+  HOME=/root
+  HOSTNAME=i-capture-the-hostname
+  HOSTTYPE=i686
+  HOST_ARCH=i386
   IFS=' 	
   '
-  INVOCATION_ID='8baae3d035c64ba18ed1115ba4174d50'
-  LANG='C'
-  LANGUAGE='en_US:en'
-  LC_ALL='C'
-  LD_LIBRARY_PATH='/usr/lib/libeatmydata'
-  LD_PRELOAD='libeatmydata.so'
-  MAIL='/var/mail/root'
-  OPTIND='1'
-  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
-  PBCURRENTCOMMANDLINEOPERATION='build'
-  PBUILDER_OPERATION='build'
-  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
-  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
-  PBUILDER_SYSCONFDIR='/etc'
-  PPID='4409'
-  PS1='# '
-  PS2='> '
+  INVOCATION_ID=2ecc8b27af5c4b4bbe62f9f4008fab3f
+  LANG=C
+  LANGUAGE=de_CH:de
+  LC_ALL=C
+  LD_LIBRARY_PATH=/usr/lib/libeatmydata
+  LD_PRELOAD=libeatmydata.so
+  MACHTYPE=i686-pc-linux-gnu
+  MAIL=/var/mail/root
+  OPTERR=1
+  OPTIND=1
+  OSTYPE=linux-gnu
+  PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
+  PBCURRENTCOMMANDLINEOPERATION=build
+  PBUILDER_OPERATION=build
+  PBUILDER_PKGDATADIR=/usr/share/pbuilder
+  PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
+  PBUILDER_SYSCONFDIR=/etc
+  PIPESTATUS=([0]="0")
+  POSIXLY_CORRECT=y
+  PPID=17053
   PS4='+ '
-  PWD='/'
-  SHELL='/bin/bash'
-  SHLVL='2'
-  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.pvkjNTt7/pbuilderrc_BcAn --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.pvkjNTt7/b1 --logfile b1/build.log prody_2.4.1+dfsg-2.dsc'
-  SUDO_GID='112'
-  SUDO_UID='107'
-  SUDO_USER='jenkins'
-  TERM='unknown'
-  TZ='/usr/share/zoneinfo/Etc/GMT+12'
-  USER='root'
-  _='/usr/bin/systemd-run'
-  http_proxy='http://78.137.99.97:3128'
+  PWD=/
+  SHELL=/bin/bash
+  SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
+  SHLVL=3
+  SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.pvkjNTt7/pbuilderrc_gugh --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.pvkjNTt7/b2 --logfile b2/build.log prody_2.4.1+dfsg-2.dsc'
+  SUDO_GID=112
+  SUDO_UID=107
+  SUDO_USER=jenkins
+  TERM=unknown
+  TZ=/usr/share/zoneinfo/Etc/GMT-14
+  UID=0
+  USER=root
+  _='I: set'
+  http_proxy=http://85.184.249.68:3128
 I: uname -a
-  Linux ionos2-i386 6.1.0-18-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.76-1 (2024-02-01) x86_64 GNU/Linux
+  Linux i-capture-the-hostname 6.1.0-18-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.76-1 (2024-02-01) x86_64 GNU/Linux
 I: ls -l /bin
-  lrwxrwxrwx 1 root root 7 Mar 16 07:43 /bin -> usr/bin
-I: user script /srv/workspace/pbuilder/4409/tmp/hooks/D02_print_environment finished
+  lrwxrwxrwx 1 root root 7 Apr 16 19:35 /bin -> usr/bin
+I: user script /srv/workspace/pbuilder/17053/tmp/hooks/D02_print_environment finished
  -> Attempting to satisfy build-dependencies
  -> Creating pbuilder-satisfydepends-dummy package
 Package: pbuilder-satisfydepends-dummy
@@ -126,7 +158,7 @@
 pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
 pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
 The following NEW packages will be installed:
-  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libcairo2{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.11t64{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libsub-override-perl{a} libtiff6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-biopython{a} python3-cairo{a} python3-chardet{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-freetype{a} python3-lib2to3{a} python3-minimal{a} python3-numpy{a} python3-pil{a} python3-pkg-resources{a} python3-pyparsing{a} python3-reportlab{a} python3-rlpycairo{a} python3-scipy{a} python3-setuptools{a} python3-zombie-imp{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} zlib1g-dev{a} 
+  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libcairo2{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.11t64{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libsub-override-perl{a} libtiff6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-biopython{a} python3-cairo{a} python3-chardet{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-freetype{a} python3-lib2to3{a} python3-minimal{a} python3-numpy{a} python3-pil{a} python3-pkg-resources{a} python3-pyparsing{a} python3-reportlab{a} python3-rlpycairo{a} python3-scipy{a} python3-setuptools{a} python3-zombie-imp{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} zlib1g-dev{a} 
 The following packages are RECOMMENDED but will NOT be installed:
   ca-certificates curl fonts-dejavu-extra javascript-common libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ python-biopython-doc python3-olefile shared-mime-info wget xdg-user-dirs 
 0 packages upgraded, 128 newly installed, 0 to remove and 0 not upgraded.
@@ -170,8 +202,8 @@
 Get: 36 http://deb.debian.org/debian unstable/main i386 libsub-override-perl all 0.10-1 [10.6 kB]
 Get: 37 http://deb.debian.org/debian unstable/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
 Get: 38 http://deb.debian.org/debian unstable/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B]
-Get: 39 http://deb.debian.org/debian unstable/main i386 libelf1t64 i386 0.191-1 [194 kB]
-Get: 40 http://deb.debian.org/debian unstable/main i386 dwz i386 0.15-1+b1 [116 kB]
+Get: 39 http://deb.debian.org/debian unstable/main i386 libelf1 i386 0.190-1+b1 [182 kB]
+Get: 40 http://deb.debian.org/debian unstable/main i386 dwz i386 0.15-1 [118 kB]
 Get: 41 http://deb.debian.org/debian unstable/main i386 libicu72 i386 72.1-4+b1 [9549 kB]
 Get: 42 http://deb.debian.org/debian unstable/main i386 libxml2 i386 2.9.14+dfsg-1.3+b2 [727 kB]
 Get: 43 http://deb.debian.org/debian unstable/main i386 gettext i386 0.21-14+b1 [1311 kB]
@@ -260,7 +292,7 @@
 Get: 126 http://deb.debian.org/debian unstable/main i386 python3-pyparsing all 3.1.1-1 [145 kB]
 Get: 127 http://deb.debian.org/debian unstable/main i386 python3-scipy i386 1.11.4-6 [19.0 MB]
 Get: 128 http://deb.debian.org/debian unstable/main i386 python3-zombie-imp all 0.0.2-2 [11.7 kB]
-Fetched 102 MB in 3s (33.2 MB/s)
+Fetched 102 MB in 2s (43.1 MB/s)
 debconf: delaying package configuration, since apt-utils is not installed
 Selecting previously unselected package libpython3.11-minimal:i386.
 (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19643 files and directories currently installed.)
@@ -387,12 +419,12 @@
 Selecting previously unselected package dh-strip-nondeterminism.
 Preparing to unpack .../025-dh-strip-nondeterminism_1.13.1-1_all.deb ...
 Unpacking dh-strip-nondeterminism (1.13.1-1) ...
-Selecting previously unselected package libelf1t64:i386.
-Preparing to unpack .../026-libelf1t64_0.191-1_i386.deb ...
-Unpacking libelf1t64:i386 (0.191-1) ...
+Selecting previously unselected package libelf1:i386.
+Preparing to unpack .../026-libelf1_0.190-1+b1_i386.deb ...
+Unpacking libelf1:i386 (0.190-1+b1) ...
 Selecting previously unselected package dwz.
-Preparing to unpack .../027-dwz_0.15-1+b1_i386.deb ...
-Unpacking dwz (0.15-1+b1) ...
+Preparing to unpack .../027-dwz_0.15-1_i386.deb ...
+Unpacking dwz (0.15-1) ...
 Selecting previously unselected package libicu72:i386.
 Preparing to unpack .../028-libicu72_72.1-4+b1_i386.deb ...
 Unpacking libicu72:i386 (72.1-4+b1) ...
@@ -681,12 +713,11 @@
 Setting up m4 (1.4.19-4) ...
 Setting up file (1:5.45-3) ...
 Setting up libjbig0:i386 (2.1-6.1+b1) ...
-Setting up libelf1t64:i386 (0.191-1) ...
 Setting up tzdata (2024a-1) ...
 
 Current default time zone: 'Etc/UTC'
-Local time is now:      Sat Mar 16 11:40:42 UTC 2024.
-Universal Time is now:  Sat Mar 16 11:40:42 UTC 2024.
+Local time is now:      Fri Apr 18 18:20:32 UTC 2025.
+Universal Time is now:  Fri Apr 18 18:20:32 UTC 2025.
 Run 'dpkg-reconfigure tzdata' if you wish to change it.
 
 Setting up libfontenc1:i386 (1:1.1.8-1) ...
@@ -709,7 +740,6 @@
 Setting up autoconf (2.71-3) ...
 Setting up libwebp7:i386 (1.3.2-0.4+b1) ...
 Setting up zlib1g-dev:i386 (1:1.3.dfsg-3.1) ...
-Setting up dwz (0.15-1+b1) ...
 Setting up sensible-utils (0.0.22) ...
 Setting up libtiff6:i386 (4.5.1+git230720-4) ...
 Setting up libuchardet0:i386 (0.0.8-1+b1) ...
@@ -720,6 +750,7 @@
 Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
 Setting up libwebpmux3:i386 (1.3.2-0.4+b1) ...
 Setting up libbsd0:i386 (0.12.1-1) ...
+Setting up libelf1:i386 (0.190-1+b1) ...
 Setting up readline-common (8.2-3.1) ...
 Setting up libxml2:i386 (2.9.14+dfsg-1.3+b2) ...
 Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
@@ -743,6 +774,7 @@
 Setting up libjs-sphinxdoc (7.2.6-5) ...
 Setting up libreadline8t64:i386 (8.2-3.1) ...
 Setting up dh-strip-nondeterminism (1.13.1-1) ...
+Setting up dwz (0.15-1) ...
 Setting up groff-base (1.23.0-3+b1) ...
 Setting up xml-core (0.19) ...
 Setting up libx11-6:i386 (2:1.8.7-1) ...
@@ -806,7 +838,11 @@
 Building tag database...
  -> Finished parsing the build-deps
 I: Building the package
-I: Running cd /build/reproducible-path/prody-2.4.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../prody_2.4.1+dfsg-2_source.changes
+I: user script /srv/workspace/pbuilder/17053/tmp/hooks/A99_set_merged_usr starting
+Not re-configuring usrmerge for unstable
+I: user script /srv/workspace/pbuilder/17053/tmp/hooks/A99_set_merged_usr finished
+hostname: Name or service not known
+I: Running cd /build/reproducible-path/prody-2.4.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S  > ../prody_2.4.1+dfsg-2_source.changes
 dpkg-buildpackage: info: source package prody
 dpkg-buildpackage: info: source version 2.4.1+dfsg-2
 dpkg-buildpackage: info: source distribution unstable
@@ -848,289 +884,289 @@
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody
 copying prody/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic
-copying prody/atomic/residue.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic
-copying prody/atomic/subset.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic
+copying prody/atomic/crossterm.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic
 copying prody/atomic/functions.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic
-copying prody/atomic/flags.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic
 copying prody/atomic/nbexclusion.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic
-copying prody/atomic/hierview.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic
-copying prody/atomic/crossterm.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic
-copying prody/atomic/atommap.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic
-copying prody/atomic/atom.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic
-copying prody/atomic/chain.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic
-copying prody/atomic/atomic.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic
-copying prody/atomic/fields.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic
 copying prody/atomic/segment.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic
+copying prody/atomic/atomic.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic
+copying prody/atomic/hierview.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic
+copying prody/atomic/dihedral.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic
 copying prody/atomic/select.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic
+copying prody/atomic/donor.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic
+copying prody/atomic/chain.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic
+copying prody/atomic/subset.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic
 copying prody/atomic/angle.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic
-copying prody/atomic/acceptor.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic
-copying prody/atomic/dihedral.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic
+copying prody/atomic/pointer.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic
 copying prody/atomic/improper.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic
-copying prody/atomic/atomgroup.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic
-copying prody/atomic/donor.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic
+copying prody/atomic/residue.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic
+copying prody/atomic/flags.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic
+copying prody/atomic/fields.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic
+copying prody/atomic/bond.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic
+copying prody/atomic/acceptor.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic
 copying prody/atomic/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic
+copying prody/atomic/atom.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic
+copying prody/atomic/atommap.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic
+copying prody/atomic/atomgroup.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic
 copying prody/atomic/selection.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic
-copying prody/atomic/pointer.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic
-copying prody/atomic/bond.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/database
-copying prody/database/dali.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/database
+copying prody/database/cath.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/database
 copying prody/database/pfam.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/database
 copying prody/database/quartataweb.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/database
-copying prody/database/uniprot.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/database
-copying prody/database/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/database
-copying prody/database/cath.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/database
 copying prody/database/goa.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/database
+copying prody/database/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/database
+copying prody/database/dali.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/database
+copying prody/database/uniprot.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/database
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
-copying prody/dynamics/essa.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
-copying prody/dynamics/entropy.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
 copying prody/dynamics/functions.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
-copying prody/dynamics/sampling.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
+copying prody/dynamics/compare.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
+copying prody/dynamics/bbenm.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
 copying prody/dynamics/editing.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
-copying prody/dynamics/gamma.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
-copying prody/dynamics/vmdfile.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
-copying prody/dynamics/exgnm.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
+copying prody/dynamics/pca.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
+copying prody/dynamics/bildfile.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
 copying prody/dynamics/nma.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
-copying prody/dynamics/heatmapper.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
-copying prody/dynamics/signature.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
-copying prody/dynamics/imanm.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
-copying prody/dynamics/nmdfile.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
+copying prody/dynamics/mode.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
+copying prody/dynamics/adaptive.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
+copying prody/dynamics/essa.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
 copying prody/dynamics/modeset.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
-copying prody/dynamics/anm.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
-copying prody/dynamics/pca.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
+copying prody/dynamics/nmdfile.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
 copying prody/dynamics/analysis.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
+copying prody/dynamics/gamma.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
+copying prody/dynamics/exgnm.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
+copying prody/dynamics/heatmapper.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
+copying prody/dynamics/entropy.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
+copying prody/dynamics/exanm.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
 copying prody/dynamics/clustenm.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
-copying prody/dynamics/mechstiff.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
+copying prody/dynamics/sampling.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
+copying prody/dynamics/imanm.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
+copying prody/dynamics/plotting.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
 copying prody/dynamics/perturb.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
+copying prody/dynamics/mechstiff.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
+copying prody/dynamics/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
 copying prody/dynamics/rtb.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
-copying prody/dynamics/adaptive.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
+copying prody/dynamics/anm.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
 copying prody/dynamics/gnm.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
-copying prody/dynamics/mode.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
-copying prody/dynamics/exanm.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
-copying prody/dynamics/plotting.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
-copying prody/dynamics/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
-copying prody/dynamics/compare.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
-copying prody/dynamics/bbenm.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
-copying prody/dynamics/bildfile.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
+copying prody/dynamics/vmdfile.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
+copying prody/dynamics/signature.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/dynamics
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/ensemble
 copying prody/ensemble/functions.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/ensemble
 copying prody/ensemble/conformation.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/ensemble
 copying prody/ensemble/pdbensemble.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/ensemble
-copying prody/ensemble/ensemble.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/ensemble
 copying prody/ensemble/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/ensemble
+copying prody/ensemble/ensemble.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/ensemble
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/kdtree
-copying prody/kdtree/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/kdtree
 copying prody/kdtree/kdtree.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/kdtree
+copying prody/kdtree/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/kdtree
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/measure
-copying prody/measure/measure.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/measure
 copying prody/measure/contacts.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/measure
+copying prody/measure/measure.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/measure
 copying prody/measure/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/measure
 copying prody/measure/transform.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/measure
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/proteins
 copying prody/proteins/wwpdb.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/proteins
-copying prody/proteins/cifheader.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/proteins
 copying prody/proteins/functions.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/proteins
-copying prody/proteins/emdfile.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/proteins
-copying prody/proteins/starfile.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/proteins
-copying prody/proteins/fixer.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/proteins
-copying prody/proteins/blastpdb.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/proteins
-copying prody/proteins/pdbclusters.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/proteins
-copying prody/proteins/waterbridges.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/proteins
+copying prody/proteins/compare.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/proteins
 copying prody/proteins/pdbfile.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/proteins
-copying prody/proteins/localpdb.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/proteins
+copying prody/proteins/stride.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/proteins
+copying prody/proteins/fixer.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/proteins
 copying prody/proteins/dssp.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/proteins
-copying prody/proteins/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/proteins
-copying prody/proteins/compare.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/proteins
+copying prody/proteins/localpdb.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/proteins
 copying prody/proteins/ciffile.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/proteins
 copying prody/proteins/header.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/proteins
-copying prody/proteins/stride.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/proteins
+copying prody/proteins/emdfile.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/proteins
+copying prody/proteins/pdbclusters.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/proteins
+copying prody/proteins/cifheader.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/proteins
+copying prody/proteins/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/proteins
+copying prody/proteins/blastpdb.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/proteins
+copying prody/proteins/starfile.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/proteins
+copying prody/proteins/waterbridges.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/proteins
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/sequence
-copying prody/sequence/msa.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/sequence
 copying prody/sequence/analysis.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/sequence
 copying prody/sequence/msafile.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/sequence
+copying prody/sequence/msa.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/sequence
 copying prody/sequence/sequence.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/sequence
 copying prody/sequence/plotting.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/sequence
 copying prody/sequence/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/sequence
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/trajectory
-copying prody/trajectory/trajbase.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/trajectory
-copying prody/trajectory/trajectory.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/trajectory
+copying prody/trajectory/frame.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/trajectory
 copying prody/trajectory/psffile.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/trajectory
+copying prody/trajectory/dcdfile.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/trajectory
+copying prody/trajectory/trajectory.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/trajectory
 copying prody/trajectory/trajfile.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/trajectory
-copying prody/trajectory/frame.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/trajectory
+copying prody/trajectory/trajbase.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/trajectory
 copying prody/trajectory/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/trajectory
-copying prody/trajectory/dcdfile.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/trajectory
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/chromatin
-copying prody/chromatin/hic.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/chromatin
 copying prody/chromatin/functions.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/chromatin
-copying prody/chromatin/norm.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/chromatin
-copying prody/chromatin/cluster.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/chromatin
 copying prody/chromatin/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/chromatin
 copying prody/chromatin/straw.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/chromatin
+copying prody/chromatin/cluster.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/chromatin
+copying prody/chromatin/hic.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/chromatin
+copying prody/chromatin/norm.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/chromatin
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/compounds
 copying prody/compounds/functions.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/compounds
+copying prody/compounds/pdbligands.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/compounds
 copying prody/compounds/ccd.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/compounds
 copying prody/compounds/bird.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/compounds
-copying prody/compounds/pdbligands.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/compounds
 copying prody/compounds/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/compounds
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/domain_decomposition
-copying prody/domain_decomposition/spectrus.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/domain_decomposition
 copying prody/domain_decomposition/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/domain_decomposition
+copying prody/domain_decomposition/spectrus.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/domain_decomposition
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/utilities
-copying prody/utilities/eigtools.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/utilities
+copying prody/utilities/misctools.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/utilities
 copying prody/utilities/doctools.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/utilities
 copying prody/utilities/seqtools.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/utilities
-copying prody/utilities/laptools.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/utilities
-copying prody/utilities/checkers.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/utilities
-copying prody/utilities/pathtools.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/utilities
-copying prody/utilities/settings.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/utilities
-copying prody/utilities/drawtools.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/utilities
 copying prody/utilities/legacy.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/utilities
 copying prody/utilities/logger.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/utilities
-copying prody/utilities/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/utilities
+copying prody/utilities/eigtools.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/utilities
+copying prody/utilities/pathtools.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/utilities
+copying prody/utilities/drawtools.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/utilities
 copying prody/utilities/TreeConstruction.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/utilities
+copying prody/utilities/checkers.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/utilities
+copying prody/utilities/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/utilities
+copying prody/utilities/settings.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/utilities
+copying prody/utilities/laptools.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/utilities
 copying prody/utilities/catchall.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/utilities
-copying prody/utilities/misctools.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/utilities
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps
 copying prody/apps/apptools.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps
 copying prody/apps/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps
+copying prody/apps/prody_apps/prody_eda.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps
 copying prody/apps/prody_apps/prody_contacts.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps
-copying prody/apps/prody_apps/prody_fetch.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps
-copying prody/apps/prody_apps/prody_blast.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps
-copying prody/apps/prody_apps/prody_biomol.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps
-copying prody/apps/prody_apps/prody_clustenm.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps
-copying prody/apps/prody_apps/prody_energy.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps
 copying prody/apps/prody_apps/prody_select.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps
-copying prody/apps/prody_apps/prody_pca.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps
-copying prody/apps/prody_apps/nmaoptions.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps
 copying prody/apps/prody_apps/prody_align.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps
-copying prody/apps/prody_apps/prody_gnm.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps
+copying prody/apps/prody_apps/nmaoptions.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps
+copying prody/apps/prody_apps/prody_pca.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps
 copying prody/apps/prody_apps/prody_catdcd.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps
+copying prody/apps/prody_apps/prody_blast.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps
+copying prody/apps/prody_apps/prody_biomol.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps
+copying prody/apps/prody_apps/prody_energy.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps
 copying prody/apps/prody_apps/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps
-copying prody/apps/prody_apps/prody_eda.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps
 copying prody/apps/prody_apps/prody_anm.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps
+copying prody/apps/prody_apps/prody_clustenm.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps
+copying prody/apps/prody_apps/prody_fetch.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps
+copying prody/apps/prody_apps/prody_gnm.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps
-copying prody/apps/evol_apps/evol_fetch.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps
+copying prody/apps/evol_apps/evol_coevol.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps
+copying prody/apps/evol_apps/evol_rankorder.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps
+copying prody/apps/evol_apps/evol_filter.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps
 copying prody/apps/evol_apps/evol_conserv.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps
+copying prody/apps/evol_apps/evol_fetch.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps
 copying prody/apps/evol_apps/evol_refine.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps
-copying prody/apps/evol_apps/evol_rankorder.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps
+copying prody/apps/evol_apps/evol_occupancy.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps
 copying prody/apps/evol_apps/evol_merge.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps
-copying prody/apps/evol_apps/evol_filter.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps
 copying prody/apps/evol_apps/evol_search.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps
 copying prody/apps/evol_apps/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps
-copying prody/apps/evol_apps/evol_occupancy.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps
-copying prody/apps/evol_apps/evol_coevol.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests
 copying prody/tests/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/apps
 copying prody/tests/apps/test_prody_catdcd.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/apps
-copying prody/tests/apps/test_prody_anm.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/apps
 copying prody/tests/apps/test_prody_examples.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/apps
 copying prody/tests/apps/test_prody_gnm.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/apps
+copying prody/tests/apps/test_prody_anm.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/apps
 copying prody/tests/apps/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/apps
 copying prody/tests/apps/test_prody_pca.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/apps
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic
 copying prody/tests/atomic/test_atommap.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic
-copying prody/tests/atomic/test_select.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic
-copying prody/tests/atomic/test_atomic.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic
 copying prody/tests/atomic/test_fragment.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic
-copying prody/tests/atomic/test_hierview.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic
-copying prody/tests/atomic/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic
+copying prody/tests/atomic/test_atomic.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic
 copying prody/tests/atomic/test_subset.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic
+copying prody/tests/atomic/test_select.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic
+copying prody/tests/atomic/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic
+copying prody/tests/atomic/test_hierview.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/atomic
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
 copying prody/tests/datafiles/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/dynamics
+copying prody/tests/dynamics/test_editing.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/dynamics
 copying prody/tests/dynamics/test_pca.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/dynamics
-copying prody/tests/dynamics/test_signature.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/dynamics
 copying prody/tests/dynamics/test_enms.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/dynamics
 copying prody/tests/dynamics/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/dynamics
-copying prody/tests/dynamics/test_editing.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/dynamics
+copying prody/tests/dynamics/test_signature.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/dynamics
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/ensemble
-copying prody/tests/ensemble/test_functions.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/ensemble
-copying prody/tests/ensemble/test_conformation.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/ensemble
 copying prody/tests/ensemble/test_pdbensemble.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/ensemble
+copying prody/tests/ensemble/test_functions.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/ensemble
 copying prody/tests/ensemble/test_ensemble.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/ensemble
+copying prody/tests/ensemble/test_conformation.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/ensemble
 copying prody/tests/ensemble/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/ensemble
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/kdtree
 copying prody/tests/kdtree/test_kdtree.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/kdtree
 copying prody/tests/kdtree/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/kdtree
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/measure
 copying prody/tests/measure/test_transform.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/measure
+copying prody/tests/measure/test_contacts.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/measure
 copying prody/tests/measure/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/measure
 copying prody/tests/measure/test_measure.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/measure
-copying prody/tests/measure/test_contacts.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/measure
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins
-copying prody/tests/proteins/test_header.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins
-copying prody/tests/proteins/test_dssp.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins
-copying prody/tests/proteins/test_ciffile.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins
 copying prody/tests/proteins/test_pdbfile.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins
+copying prody/tests/proteins/test_ciffile.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins
 copying prody/tests/proteins/test_localpdb.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins
-copying prody/tests/proteins/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins
+copying prody/tests/proteins/test_dssp.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins
+copying prody/tests/proteins/test_header.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins
 copying prody/tests/proteins/test_wwpdb.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins
+copying prody/tests/proteins/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/proteins
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/sequence
-copying prody/tests/sequence/test_analysis.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/sequence
+copying prody/tests/sequence/test_sequence.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/sequence
 copying prody/tests/sequence/test_msa.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/sequence
 copying prody/tests/sequence/test_msafile.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/sequence
-copying prody/tests/sequence/test_sequence.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/sequence
 copying prody/tests/sequence/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/sequence
+copying prody/tests/sequence/test_analysis.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/sequence
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/trajectory
 copying prody/tests/trajectory/test_frame.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/trajectory
 copying prody/tests/trajectory/test_dcdfile.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/trajectory
 copying prody/tests/trajectory/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/trajectory
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/utilities
-copying prody/tests/utilities/test_pathtools.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/utilities
 copying prody/tests/utilities/test_checkers.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/utilities
-copying prody/tests/utilities/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/utilities
 copying prody/tests/utilities/test_misctools.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/utilities
+copying prody/tests/utilities/test_pathtools.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/utilities
+copying prody/tests/utilities/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/utilities
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/utilities/datafiles
 copying prody/utilities/datafiles/saxs_water.dat -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/utilities/datafiles
 copying prody/utilities/datafiles/mod_res_map.dat -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/utilities/datafiles
+copying prody/tests/datafiles/pdb1r19_dssp.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/pdb1ubi_ca.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/pdb1ejg_oneatom.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/pdb3hsy.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/pdb2nwl-opm.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/pdbRTER.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
 copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_h36.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/pdb3p3w.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/pdb3mht.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/pdb6fpj_Bb_fixed_solv_ions.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
 copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_hex.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/pdb2gb1_truncated.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/pdb1ejg.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/pdb3o21.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
 copying prody/tests/datafiles/pdb4v8r_hex.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/pdbRTER.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/pdb1ubi.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/pdb2k39_ca.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/pdb3hsy.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/pdb6fpj_Bb_fixed_solv_ions.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
 copying prody/tests/datafiles/pdb2k39_truncated.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/pdb3o21.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/pdb2k39_ca.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/pdb3p3w.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/pdb1ubi.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
 copying prody/tests/datafiles/pdb4v8r_h36.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/pdb2nwl-opm.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/pdb1ubi_ca.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/pdb1ejg_oneatom.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/pdb3mht.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/pdb1ejg.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/pdb2gb1_truncated.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/pdb1r19_dssp.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/commute1ubi.dat -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/exanm2nwl_evalues.dat -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/anm1ubi_evalues.dat -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
 copying prody/tests/datafiles/pca2k39_evalues.dat -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/hit1ubi.dat -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
 copying prody/tests/datafiles/gnm1ubi_vectors.dat -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/anm1ubi_vectors.dat -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/gnm1ubi_evalues.dat -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
 copying prody/tests/datafiles/msa_Cys_knot_sca.dat -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
 copying prody/tests/datafiles/pca2k39_vectors.dat -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/hit1ubi.dat -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/msa_Cys_knot_di.dat -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/exanm2nwl_evalues.dat -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
 copying prody/tests/datafiles/exanm2nwl_vectors.dat -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/gnm1ubi_evalues.dat -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/anm1ubi_evalues.dat -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/commute1ubi.dat -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/msa_Cys_knot_di.dat -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/anm1ubi_vectors.dat -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
 copying prody/tests/datafiles/mmcif_6zu5.cif -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
 copying prody/tests/datafiles/mmcif_6yfy.cif -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
 copying prody/tests/datafiles/gnm1ubi_kirchhoff.coo -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/rtb2gb1_hessian.coo -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/rtb2gb1_project.coo -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
 copying prody/tests/datafiles/pca2k39_cov.coo -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
 copying prody/tests/datafiles/anm1ubi_hessian.coo -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/rtb2gb1_project.coo -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
 copying prody/tests/datafiles/exanm2nwl_hessian.coo -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/rtb2gb1_hessian.coo -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
 copying prody/tests/datafiles/dcd2k39_truncated.dcd -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
 copying prody/tests/datafiles/xmlSTI.xml -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/msa_Cys_knot.fasta -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/msa_Cys_knot.sth -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/msa_3hsyA_3o21A_new.fasta -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
 copying prody/tests/datafiles/msa_3hsyA_3o21A.fasta -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
 copying prody/tests/datafiles/msa_Cys_knot.slx -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/msa_3hsyA_3o21A_new.fasta -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/msa_Cys_knot.fasta -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/msa_Cys_knot.sth -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles
 running build_ext
 building 'prody.dynamics.rtbtools' extension
 creating build
@@ -1169,289 +1205,289 @@
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody
 copying prody/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic
-copying prody/atomic/residue.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic
-copying prody/atomic/subset.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic
+copying prody/atomic/crossterm.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic
 copying prody/atomic/functions.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic
-copying prody/atomic/flags.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic
 copying prody/atomic/nbexclusion.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic
-copying prody/atomic/hierview.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic
-copying prody/atomic/crossterm.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic
-copying prody/atomic/atommap.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic
-copying prody/atomic/atom.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic
-copying prody/atomic/chain.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic
-copying prody/atomic/atomic.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic
-copying prody/atomic/fields.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic
 copying prody/atomic/segment.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic
+copying prody/atomic/atomic.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic
+copying prody/atomic/hierview.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic
+copying prody/atomic/dihedral.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic
 copying prody/atomic/select.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic
+copying prody/atomic/donor.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic
+copying prody/atomic/chain.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic
+copying prody/atomic/subset.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic
 copying prody/atomic/angle.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic
-copying prody/atomic/acceptor.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic
-copying prody/atomic/dihedral.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic
+copying prody/atomic/pointer.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic
 copying prody/atomic/improper.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic
-copying prody/atomic/atomgroup.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic
-copying prody/atomic/donor.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic
+copying prody/atomic/residue.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic
+copying prody/atomic/flags.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic
+copying prody/atomic/fields.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic
+copying prody/atomic/bond.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic
+copying prody/atomic/acceptor.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic
 copying prody/atomic/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic
+copying prody/atomic/atom.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic
+copying prody/atomic/atommap.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic
+copying prody/atomic/atomgroup.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic
 copying prody/atomic/selection.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic
-copying prody/atomic/pointer.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic
-copying prody/atomic/bond.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/database
-copying prody/database/dali.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/database
+copying prody/database/cath.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/database
 copying prody/database/pfam.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/database
 copying prody/database/quartataweb.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/database
-copying prody/database/uniprot.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/database
-copying prody/database/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/database
-copying prody/database/cath.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/database
 copying prody/database/goa.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/database
+copying prody/database/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/database
+copying prody/database/dali.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/database
+copying prody/database/uniprot.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/database
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
-copying prody/dynamics/essa.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
-copying prody/dynamics/entropy.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
 copying prody/dynamics/functions.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
-copying prody/dynamics/sampling.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
+copying prody/dynamics/compare.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
+copying prody/dynamics/bbenm.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
 copying prody/dynamics/editing.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
-copying prody/dynamics/gamma.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
-copying prody/dynamics/vmdfile.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
-copying prody/dynamics/exgnm.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
+copying prody/dynamics/pca.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
+copying prody/dynamics/bildfile.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
 copying prody/dynamics/nma.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
-copying prody/dynamics/heatmapper.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
-copying prody/dynamics/signature.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
-copying prody/dynamics/imanm.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
-copying prody/dynamics/nmdfile.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
+copying prody/dynamics/mode.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
+copying prody/dynamics/adaptive.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
+copying prody/dynamics/essa.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
 copying prody/dynamics/modeset.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
-copying prody/dynamics/anm.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
-copying prody/dynamics/pca.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
+copying prody/dynamics/nmdfile.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
 copying prody/dynamics/analysis.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
+copying prody/dynamics/gamma.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
+copying prody/dynamics/exgnm.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
+copying prody/dynamics/heatmapper.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
+copying prody/dynamics/entropy.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
+copying prody/dynamics/exanm.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
 copying prody/dynamics/clustenm.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
-copying prody/dynamics/mechstiff.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
+copying prody/dynamics/sampling.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
+copying prody/dynamics/imanm.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
+copying prody/dynamics/plotting.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
 copying prody/dynamics/perturb.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
+copying prody/dynamics/mechstiff.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
+copying prody/dynamics/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
 copying prody/dynamics/rtb.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
-copying prody/dynamics/adaptive.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
+copying prody/dynamics/anm.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
 copying prody/dynamics/gnm.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
-copying prody/dynamics/mode.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
-copying prody/dynamics/exanm.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
-copying prody/dynamics/plotting.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
-copying prody/dynamics/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
-copying prody/dynamics/compare.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
-copying prody/dynamics/bbenm.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
-copying prody/dynamics/bildfile.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
+copying prody/dynamics/vmdfile.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
+copying prody/dynamics/signature.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/dynamics
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/ensemble
 copying prody/ensemble/functions.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/ensemble
 copying prody/ensemble/conformation.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/ensemble
 copying prody/ensemble/pdbensemble.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/ensemble
-copying prody/ensemble/ensemble.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/ensemble
 copying prody/ensemble/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/ensemble
+copying prody/ensemble/ensemble.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/ensemble
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/kdtree
-copying prody/kdtree/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/kdtree
 copying prody/kdtree/kdtree.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/kdtree
+copying prody/kdtree/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/kdtree
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/measure
-copying prody/measure/measure.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/measure
 copying prody/measure/contacts.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/measure
+copying prody/measure/measure.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/measure
 copying prody/measure/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/measure
 copying prody/measure/transform.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/measure
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/proteins
 copying prody/proteins/wwpdb.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/proteins
-copying prody/proteins/cifheader.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/proteins
 copying prody/proteins/functions.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/proteins
-copying prody/proteins/emdfile.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/proteins
-copying prody/proteins/starfile.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/proteins
-copying prody/proteins/fixer.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/proteins
-copying prody/proteins/blastpdb.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/proteins
-copying prody/proteins/pdbclusters.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/proteins
-copying prody/proteins/waterbridges.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/proteins
+copying prody/proteins/compare.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/proteins
 copying prody/proteins/pdbfile.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/proteins
-copying prody/proteins/localpdb.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/proteins
+copying prody/proteins/stride.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/proteins
+copying prody/proteins/fixer.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/proteins
 copying prody/proteins/dssp.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/proteins
-copying prody/proteins/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/proteins
-copying prody/proteins/compare.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/proteins
+copying prody/proteins/localpdb.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/proteins
 copying prody/proteins/ciffile.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/proteins
 copying prody/proteins/header.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/proteins
-copying prody/proteins/stride.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/proteins
+copying prody/proteins/emdfile.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/proteins
+copying prody/proteins/pdbclusters.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/proteins
+copying prody/proteins/cifheader.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/proteins
+copying prody/proteins/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/proteins
+copying prody/proteins/blastpdb.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/proteins
+copying prody/proteins/starfile.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/proteins
+copying prody/proteins/waterbridges.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/proteins
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/sequence
-copying prody/sequence/msa.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/sequence
 copying prody/sequence/analysis.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/sequence
 copying prody/sequence/msafile.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/sequence
+copying prody/sequence/msa.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/sequence
 copying prody/sequence/sequence.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/sequence
 copying prody/sequence/plotting.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/sequence
 copying prody/sequence/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/sequence
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/trajectory
-copying prody/trajectory/trajbase.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/trajectory
-copying prody/trajectory/trajectory.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/trajectory
+copying prody/trajectory/frame.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/trajectory
 copying prody/trajectory/psffile.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/trajectory
+copying prody/trajectory/dcdfile.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/trajectory
+copying prody/trajectory/trajectory.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/trajectory
 copying prody/trajectory/trajfile.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/trajectory
-copying prody/trajectory/frame.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/trajectory
+copying prody/trajectory/trajbase.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/trajectory
 copying prody/trajectory/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/trajectory
-copying prody/trajectory/dcdfile.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/trajectory
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/chromatin
-copying prody/chromatin/hic.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/chromatin
 copying prody/chromatin/functions.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/chromatin
-copying prody/chromatin/norm.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/chromatin
-copying prody/chromatin/cluster.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/chromatin
 copying prody/chromatin/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/chromatin
 copying prody/chromatin/straw.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/chromatin
+copying prody/chromatin/cluster.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/chromatin
+copying prody/chromatin/hic.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/chromatin
+copying prody/chromatin/norm.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/chromatin
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/compounds
 copying prody/compounds/functions.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/compounds
+copying prody/compounds/pdbligands.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/compounds
 copying prody/compounds/ccd.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/compounds
 copying prody/compounds/bird.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/compounds
-copying prody/compounds/pdbligands.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/compounds
 copying prody/compounds/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/compounds
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/domain_decomposition
-copying prody/domain_decomposition/spectrus.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/domain_decomposition
 copying prody/domain_decomposition/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/domain_decomposition
+copying prody/domain_decomposition/spectrus.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/domain_decomposition
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/utilities
-copying prody/utilities/eigtools.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/utilities
+copying prody/utilities/misctools.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/utilities
 copying prody/utilities/doctools.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/utilities
 copying prody/utilities/seqtools.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/utilities
-copying prody/utilities/laptools.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/utilities
-copying prody/utilities/checkers.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/utilities
-copying prody/utilities/pathtools.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/utilities
-copying prody/utilities/settings.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/utilities
-copying prody/utilities/drawtools.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/utilities
 copying prody/utilities/legacy.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/utilities
 copying prody/utilities/logger.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/utilities
-copying prody/utilities/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/utilities
+copying prody/utilities/eigtools.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/utilities
+copying prody/utilities/pathtools.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/utilities
+copying prody/utilities/drawtools.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/utilities
 copying prody/utilities/TreeConstruction.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/utilities
+copying prody/utilities/checkers.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/utilities
+copying prody/utilities/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/utilities
+copying prody/utilities/settings.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/utilities
+copying prody/utilities/laptools.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/utilities
 copying prody/utilities/catchall.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/utilities
-copying prody/utilities/misctools.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/utilities
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps
 copying prody/apps/apptools.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps
 copying prody/apps/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps
+copying prody/apps/prody_apps/prody_eda.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps
 copying prody/apps/prody_apps/prody_contacts.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps
-copying prody/apps/prody_apps/prody_fetch.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps
-copying prody/apps/prody_apps/prody_blast.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps
-copying prody/apps/prody_apps/prody_biomol.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps
-copying prody/apps/prody_apps/prody_clustenm.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps
-copying prody/apps/prody_apps/prody_energy.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps
 copying prody/apps/prody_apps/prody_select.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps
-copying prody/apps/prody_apps/prody_pca.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps
-copying prody/apps/prody_apps/nmaoptions.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps
 copying prody/apps/prody_apps/prody_align.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps
-copying prody/apps/prody_apps/prody_gnm.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps
+copying prody/apps/prody_apps/nmaoptions.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps
+copying prody/apps/prody_apps/prody_pca.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps
 copying prody/apps/prody_apps/prody_catdcd.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps
+copying prody/apps/prody_apps/prody_blast.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps
+copying prody/apps/prody_apps/prody_biomol.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps
+copying prody/apps/prody_apps/prody_energy.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps
 copying prody/apps/prody_apps/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps
-copying prody/apps/prody_apps/prody_eda.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps
 copying prody/apps/prody_apps/prody_anm.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps
+copying prody/apps/prody_apps/prody_clustenm.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps
+copying prody/apps/prody_apps/prody_fetch.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps
+copying prody/apps/prody_apps/prody_gnm.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps
-copying prody/apps/evol_apps/evol_fetch.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps
+copying prody/apps/evol_apps/evol_coevol.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps
+copying prody/apps/evol_apps/evol_rankorder.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps
+copying prody/apps/evol_apps/evol_filter.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps
 copying prody/apps/evol_apps/evol_conserv.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps
+copying prody/apps/evol_apps/evol_fetch.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps
 copying prody/apps/evol_apps/evol_refine.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps
-copying prody/apps/evol_apps/evol_rankorder.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps
+copying prody/apps/evol_apps/evol_occupancy.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps
 copying prody/apps/evol_apps/evol_merge.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps
-copying prody/apps/evol_apps/evol_filter.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps
 copying prody/apps/evol_apps/evol_search.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps
 copying prody/apps/evol_apps/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps
-copying prody/apps/evol_apps/evol_occupancy.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps
-copying prody/apps/evol_apps/evol_coevol.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests
 copying prody/tests/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/apps
 copying prody/tests/apps/test_prody_catdcd.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/apps
-copying prody/tests/apps/test_prody_anm.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/apps
 copying prody/tests/apps/test_prody_examples.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/apps
 copying prody/tests/apps/test_prody_gnm.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/apps
+copying prody/tests/apps/test_prody_anm.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/apps
 copying prody/tests/apps/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/apps
 copying prody/tests/apps/test_prody_pca.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/apps
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic
 copying prody/tests/atomic/test_atommap.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic
-copying prody/tests/atomic/test_select.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic
-copying prody/tests/atomic/test_atomic.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic
 copying prody/tests/atomic/test_fragment.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic
-copying prody/tests/atomic/test_hierview.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic
-copying prody/tests/atomic/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic
+copying prody/tests/atomic/test_atomic.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic
 copying prody/tests/atomic/test_subset.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic
+copying prody/tests/atomic/test_select.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic
+copying prody/tests/atomic/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic
+copying prody/tests/atomic/test_hierview.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/atomic
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
 copying prody/tests/datafiles/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/dynamics
+copying prody/tests/dynamics/test_editing.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/dynamics
 copying prody/tests/dynamics/test_pca.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/dynamics
-copying prody/tests/dynamics/test_signature.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/dynamics
 copying prody/tests/dynamics/test_enms.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/dynamics
 copying prody/tests/dynamics/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/dynamics
-copying prody/tests/dynamics/test_editing.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/dynamics
+copying prody/tests/dynamics/test_signature.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/dynamics
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/ensemble
-copying prody/tests/ensemble/test_functions.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/ensemble
-copying prody/tests/ensemble/test_conformation.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/ensemble
 copying prody/tests/ensemble/test_pdbensemble.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/ensemble
+copying prody/tests/ensemble/test_functions.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/ensemble
 copying prody/tests/ensemble/test_ensemble.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/ensemble
+copying prody/tests/ensemble/test_conformation.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/ensemble
 copying prody/tests/ensemble/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/ensemble
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/kdtree
 copying prody/tests/kdtree/test_kdtree.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/kdtree
 copying prody/tests/kdtree/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/kdtree
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/measure
 copying prody/tests/measure/test_transform.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/measure
+copying prody/tests/measure/test_contacts.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/measure
 copying prody/tests/measure/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/measure
 copying prody/tests/measure/test_measure.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/measure
-copying prody/tests/measure/test_contacts.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/measure
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins
-copying prody/tests/proteins/test_header.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins
-copying prody/tests/proteins/test_dssp.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins
-copying prody/tests/proteins/test_ciffile.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins
 copying prody/tests/proteins/test_pdbfile.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins
+copying prody/tests/proteins/test_ciffile.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins
 copying prody/tests/proteins/test_localpdb.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins
-copying prody/tests/proteins/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins
+copying prody/tests/proteins/test_dssp.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins
+copying prody/tests/proteins/test_header.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins
 copying prody/tests/proteins/test_wwpdb.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins
+copying prody/tests/proteins/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/sequence
-copying prody/tests/sequence/test_analysis.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/sequence
+copying prody/tests/sequence/test_sequence.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/sequence
 copying prody/tests/sequence/test_msa.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/sequence
 copying prody/tests/sequence/test_msafile.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/sequence
-copying prody/tests/sequence/test_sequence.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/sequence
 copying prody/tests/sequence/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/sequence
+copying prody/tests/sequence/test_analysis.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/sequence
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/trajectory
 copying prody/tests/trajectory/test_frame.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/trajectory
 copying prody/tests/trajectory/test_dcdfile.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/trajectory
 copying prody/tests/trajectory/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/trajectory
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/utilities
-copying prody/tests/utilities/test_pathtools.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/utilities
 copying prody/tests/utilities/test_checkers.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/utilities
-copying prody/tests/utilities/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/utilities
 copying prody/tests/utilities/test_misctools.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/utilities
+copying prody/tests/utilities/test_pathtools.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/utilities
+copying prody/tests/utilities/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/utilities
 creating /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/utilities/datafiles
 copying prody/utilities/datafiles/saxs_water.dat -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/utilities/datafiles
 copying prody/utilities/datafiles/mod_res_map.dat -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/utilities/datafiles
+copying prody/tests/datafiles/pdb1r19_dssp.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/pdb1ubi_ca.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/pdb1ejg_oneatom.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/pdb3hsy.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/pdb2nwl-opm.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/pdbRTER.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
 copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_h36.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/pdb3p3w.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/pdb3mht.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/pdb6fpj_Bb_fixed_solv_ions.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
 copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_hex.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/pdb2gb1_truncated.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/pdb1ejg.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/pdb3o21.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
 copying prody/tests/datafiles/pdb4v8r_hex.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/pdbRTER.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/pdb1ubi.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/pdb2k39_ca.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/pdb3hsy.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/pdb6fpj_Bb_fixed_solv_ions.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
 copying prody/tests/datafiles/pdb2k39_truncated.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/pdb3o21.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/pdb2k39_ca.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/pdb3p3w.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/pdb1ubi.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
 copying prody/tests/datafiles/pdb4v8r_h36.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/pdb2nwl-opm.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/pdb1ubi_ca.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/pdb1ejg_oneatom.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/pdb3mht.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/pdb1ejg.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/pdb2gb1_truncated.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/pdb1r19_dssp.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/commute1ubi.dat -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/exanm2nwl_evalues.dat -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/anm1ubi_evalues.dat -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
 copying prody/tests/datafiles/pca2k39_evalues.dat -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/hit1ubi.dat -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
 copying prody/tests/datafiles/gnm1ubi_vectors.dat -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/anm1ubi_vectors.dat -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/gnm1ubi_evalues.dat -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
 copying prody/tests/datafiles/msa_Cys_knot_sca.dat -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
 copying prody/tests/datafiles/pca2k39_vectors.dat -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/hit1ubi.dat -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/msa_Cys_knot_di.dat -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/exanm2nwl_evalues.dat -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
 copying prody/tests/datafiles/exanm2nwl_vectors.dat -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/gnm1ubi_evalues.dat -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/anm1ubi_evalues.dat -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/commute1ubi.dat -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/msa_Cys_knot_di.dat -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/anm1ubi_vectors.dat -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
 copying prody/tests/datafiles/mmcif_6zu5.cif -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
 copying prody/tests/datafiles/mmcif_6yfy.cif -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
 copying prody/tests/datafiles/gnm1ubi_kirchhoff.coo -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/rtb2gb1_hessian.coo -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/rtb2gb1_project.coo -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
 copying prody/tests/datafiles/pca2k39_cov.coo -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
 copying prody/tests/datafiles/anm1ubi_hessian.coo -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/rtb2gb1_project.coo -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
 copying prody/tests/datafiles/exanm2nwl_hessian.coo -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/rtb2gb1_hessian.coo -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
 copying prody/tests/datafiles/dcd2k39_truncated.dcd -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
 copying prody/tests/datafiles/xmlSTI.xml -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/msa_Cys_knot.fasta -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/msa_Cys_knot.sth -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
-copying prody/tests/datafiles/msa_3hsyA_3o21A_new.fasta -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
 copying prody/tests/datafiles/msa_3hsyA_3o21A.fasta -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
 copying prody/tests/datafiles/msa_Cys_knot.slx -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/msa_3hsyA_3o21A_new.fasta -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/msa_Cys_knot.fasta -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
+copying prody/tests/datafiles/msa_Cys_knot.sth -> /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/datafiles
 running build_ext
 building 'prody.dynamics.rtbtools' extension
 creating build/temp.linux-i686-cpython-311
@@ -2775,7 +2811,7 @@
 testVector3d (prody.tests.dynamics.test_editing.TestSlicing.testVector3d) ... ok
 testBuildHessianSlow (prody.tests.dynamics.test_enms.TestANM.testBuildHessianSlow) ... ok
 testBuildMatrixCoordsArray (prody.tests.dynamics.test_enms.TestANM.testBuildMatrixCoordsArray)
-Test output when  *coords* is an array. ... ok
+Test output when  *coords* is an array. ... FAIL
 testBuildMatrixCoordsWrongType (prody.tests.dynamics.test_enms.TestANM.testBuildMatrixCoordsWrongType)
 Test response to wrong type *coords* argument. ... ok
 testBuildMatrixCutoffInvalidValue (prody.tests.dynamics.test_enms.TestANM.testBuildMatrixCutoffInvalidValue)
@@ -2828,7 +2864,7 @@
 testHessian (prody.tests.dynamics.test_enms.TestEXANMResults.testHessian)
 Test Hessian matrix. ... ok
 testHessianSums (prody.tests.dynamics.test_enms.TestEXANMResults.testHessianSums) ... ok
-testHessianSymmetry (prody.tests.dynamics.test_enms.TestEXANMResults.testHessianSymmetry) ... ok
+testHessianSymmetry (prody.tests.dynamics.test_enms.TestEXANMResults.testHessianSymmetry) ... FAIL
 testVariances (prody.tests.dynamics.test_enms.TestEXANMResults.testVariances)
 Test variances. ... ok
 testBuildMatrixCoordsArray (prody.tests.dynamics.test_enms.TestGNM.testBuildMatrixCoordsArray)
@@ -3236,10 +3272,70 @@
 ResourceWarning: Enable tracemalloc to get the object allocation traceback
 ok
 
+======================================================================
+FAIL: testBuildMatrixCoordsArray (prody.tests.dynamics.test_enms.TestANM.testBuildMatrixCoordsArray)
+Test output when  *coords* is an array.
+----------------------------------------------------------------------
+Traceback (most recent call last):
+  File "/build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/dynamics/test_enms.py", line 295, in testBuildMatrixCoordsArray
+    assert_equal(self.getMatrix(), self.getExpected(),
+  File "/usr/lib/python3/dist-packages/numpy/testing/_private/utils.py", line 349, in assert_equal
+    return assert_array_equal(actual, desired, err_msg, verbose)
+           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+  File "/usr/lib/python3/dist-packages/numpy/testing/_private/utils.py", line 985, in assert_array_equal
+    assert_array_compare(operator.__eq__, x, y, err_msg=err_msg,
+  File "/usr/lib/python3.12/contextlib.py", line 81, in inner
+    return func(*args, **kwds)
+           ^^^^^^^^^^^^^^^^^^^
+  File "/usr/lib/python3/dist-packages/numpy/testing/_private/utils.py", line 862, in assert_array_compare
+    raise AssertionError(msg)
+AssertionError: 
+Arrays are not equal
+failed to get correct matrix
+Mismatched elements: 3 / 51984 (0.00577%)
+Max absolute difference: 4.4408921e-16
+Max relative difference: 7.83963072e-16
+ x: array([[ 6.913751,  0.021868,  0.94014 , ...,  0.      ,  0.      ,
+         0.      ],
+       [ 0.021868,  9.066915, -0.076779, ...,  0.      ,  0.      ,...
+ y: array([[ 6.913751,  0.021868,  0.94014 , ...,  0.      ,  0.      ,
+         0.      ],
+       [ 0.021868,  9.066915, -0.076779, ...,  0.      ,  0.      ,...
+
+======================================================================
+FAIL: testHessianSymmetry (prody.tests.dynamics.test_enms.TestEXANMResults.testHessianSymmetry)
+----------------------------------------------------------------------
+Traceback (most recent call last):
+  File "/build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/dynamics/test_enms.py", line 181, in testHessianSymmetry
+    assert_equal(hessian, hessian.T, 'hessian is not symmetric')
+  File "/usr/lib/python3/dist-packages/numpy/testing/_private/utils.py", line 349, in assert_equal
+    return assert_array_equal(actual, desired, err_msg, verbose)
+           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+  File "/usr/lib/python3/dist-packages/numpy/testing/_private/utils.py", line 985, in assert_array_equal
+    assert_array_compare(operator.__eq__, x, y, err_msg=err_msg,
+  File "/usr/lib/python3.12/contextlib.py", line 81, in inner
+    return func(*args, **kwds)
+           ^^^^^^^^^^^^^^^^^^^
+  File "/usr/lib/python3/dist-packages/numpy/testing/_private/utils.py", line 862, in assert_array_compare
+    raise AssertionError(msg)
+AssertionError: 
+Arrays are not equal
+hessian is not symmetric
+Mismatched elements: 166 / 13089924 (0.00127%)
+Max absolute difference: 8.8817842e-16
+Max relative difference: 4.00832339e-16
+ x: array([[ 8.024368,  0.273151,  4.136877, ...,  0.      ,  0.      ,
+         0.      ],
+       [ 0.273151,  3.353604, -0.105517, ...,  0.      ,  0.      ,...
+ y: array([[ 8.024368,  0.273151,  4.136877, ...,  0.      ,  0.      ,
+         0.      ],
+       [ 0.273151,  3.353604, -0.105517, ...,  0.      ,  0.      ,...
+
 ----------------------------------------------------------------------
-Ran 971 tests in 248.860s
+Ran 971 tests in 112.069s
 
-OK (skipped=39)
+FAILED (failures=2, skipped=39)
+E: pybuild pybuild:389: test: plugin distutils failed with: exit code=1: cd /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build; python3.12 -m unittest discover -v 
 I: pybuild base:305: cd /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build; python3.11 -m unittest discover -v 
 testANMCommand (prody.tests.apps.test_prody_anm.TestANMCommand.testANMCommand) ... skipped 'prody command not found'
 testAlignConcat (prody.tests.apps.test_prody_catdcd.TestCatdcdCommand.testAlignConcat) ... skipped 'prody command not found'
@@ -4503,7 +4599,7 @@
 testVector3d (prody.tests.dynamics.test_editing.TestSlicing.testVector3d) ... ok
 testBuildHessianSlow (prody.tests.dynamics.test_enms.TestANM.testBuildHessianSlow) ... ok
 testBuildMatrixCoordsArray (prody.tests.dynamics.test_enms.TestANM.testBuildMatrixCoordsArray)
-Test output when  *coords* is an array. ... ok
+Test output when  *coords* is an array. ... FAIL
 testBuildMatrixCoordsWrongType (prody.tests.dynamics.test_enms.TestANM.testBuildMatrixCoordsWrongType)
 Test response to wrong type *coords* argument. ... ok
 testBuildMatrixCutoffInvalidValue (prody.tests.dynamics.test_enms.TestANM.testBuildMatrixCutoffInvalidValue)
@@ -4964,1624 +5060,56 @@
 ResourceWarning: Enable tracemalloc to get the object allocation traceback
 ok
 
+======================================================================
+FAIL: testBuildMatrixCoordsArray (prody.tests.dynamics.test_enms.TestANM.testBuildMatrixCoordsArray)
+Test output when  *coords* is an array.
 ----------------------------------------------------------------------
-Ran 971 tests in 255.408s
-
-OK (skipped=39)
-   create-stamp debian/debhelper-build-stamp
-   dh_testroot -O--buildsystem=pybuild
-   dh_prep -O--buildsystem=pybuild
-   dh_auto_install -O--buildsystem=pybuild
-I: pybuild base:305: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody 
-running install
-/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
-!!
-
-        ********************************************************************************
-        Please avoid running ``setup.py`` directly.
-        Instead, use pypa/build, pypa/installer or other
-        standards-based tools.
-
-        See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
-        ********************************************************************************
-
-!!
-  self.initialize_options()
-running build
-running build_py
-running build_ext
-running install_lib
-creating /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody
-creating /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr
-creating /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib
-creating /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12
-creating /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages
-creating /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody
-creating /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/kdtree
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/kdtree/_CKDTree.cpython-312-i386-linux-gnu.so -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/kdtree
-creating /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/kdtree/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/kdtree/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/kdtree/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/kdtree/__pycache__/kdtree.cpython-312.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/kdtree/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/kdtree/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/kdtree
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/kdtree/kdtree.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/kdtree
-creating /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/trajectory/trajbase.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory
-creating /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/trajectory/__pycache__/dcdfile.cpython-312.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/trajectory/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/trajectory/__pycache__/frame.cpython-312.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/trajectory/__pycache__/trajectory.cpython-312.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/trajectory/__pycache__/trajbase.cpython-312.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/trajectory/__pycache__/psffile.cpython-312.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/trajectory/__pycache__/trajfile.cpython-312.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/trajectory/trajectory.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/trajectory/psffile.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/trajectory/trajfile.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/trajectory/frame.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/trajectory/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/trajectory/dcdfile.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory
-creating /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps
-creating /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/prody_contacts.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/prody_fetch.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/prody_blast.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/prody_biomol.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/prody_clustenm.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps
-creating /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/__pycache__
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-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/__pycache__/prody_pca.cpython-312.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/__pycache__/prody_biomol.cpython-312.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/__pycache__/prody_energy.cpython-312.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/__pycache__
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-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/prody_energy.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps
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-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/prody_align.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps
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-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/prody_catdcd.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/prody_apps/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps
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-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/apptools.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps
-creating /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps
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-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/apps/evol_apps/evol_conserv.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps
-creating /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps/__pycache__
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-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/ensemble/__pycache__/test_conformation.cpython-312.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/ensemble/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/ensemble/__pycache__/test_pdbensemble.cpython-312.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/ensemble/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/ensemble/test_pdbensemble.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/ensemble
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/ensemble/test_ensemble.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/ensemble
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/ensemble/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/ensemble
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-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/utilities/test_checkers.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/utilities
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-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/utilities/test_misctools.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/utilities
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-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pdb4v8r_h36.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles
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-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/anm1ubi_hessian.coo -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles
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-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/dcd2k39_truncated.dcd -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles
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-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/msa_Cys_knot.slx -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles
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-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/datafiles/pdb1tw7_step3_charmm2namd.pdb -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles
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-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/tests/sequence/test_sequence.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/sequence
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-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic/__pycache__/dihedral.cpython-312.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic/__pycache__/acceptor.cpython-312.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic/__pycache__/pointer.cpython-312.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic/__pycache__/select.cpython-312.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic/__pycache__/crossterm.cpython-312.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic/__pycache__/subset.cpython-312.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic/__pycache__/hierview.cpython-312.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic/__pycache__/fields.cpython-312.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic/__pycache__/bond.cpython-312.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic/__pycache__/nbexclusion.cpython-312.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic/__pycache__/angle.cpython-312.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic/__pycache__/atom.cpython-312.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic/__pycache__/donor.cpython-312.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic/__pycache__/selection.cpython-312.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic/__pycache__/improper.cpython-312.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic/__pycache__/segment.cpython-312.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic/__pycache__/functions.cpython-312.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic/__pycache__/residue.cpython-312.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic/__pycache__/flags.cpython-312.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic/__pycache__/chain.cpython-312.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic/fields.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic/segment.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic/select.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic/angle.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic/acceptor.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic/dihedral.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic/improper.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic/atomgroup.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic/donor.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic/selection.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic/pointer.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/atomic/bond.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic
-creating /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/chromatin/hic.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/chromatin/functions.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/chromatin/norm.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/chromatin/cluster.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin
-creating /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/chromatin/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/chromatin/__pycache__/cluster.cpython-312.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/chromatin/__pycache__/hic.cpython-312.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/chromatin/__pycache__/functions.cpython-312.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/chromatin/__pycache__/norm.cpython-312.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/chromatin/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.12_prody/build/prody/chromatin/straw.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/kdtree/__init__.py to __init__.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/kdtree/kdtree.py to kdtree.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory/trajbase.py to trajbase.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory/trajectory.py to trajectory.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory/psffile.py to psffile.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory/trajfile.py to trajfile.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory/frame.py to frame.cpython-312.pyc
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-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/trajectory/dcdfile.py to dcdfile.cpython-312.pyc
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-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/prody_apps/__init__.py to __init__.cpython-312.pyc
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-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/apptools.py to apptools.cpython-312.pyc
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-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps/evol_fetch.py to evol_fetch.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps/evol_conserv.py to evol_conserv.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps/evol_refine.py to evol_refine.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps/evol_rankorder.py to evol_rankorder.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps/evol_merge.py to evol_merge.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps/evol_filter.py to evol_filter.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps/evol_search.py to evol_search.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps/__init__.py to __init__.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps/evol_occupancy.py to evol_occupancy.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/apps/evol_apps/evol_coevol.py to evol_coevol.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/database/dali.py to dali.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/database/pfam.py to pfam.cpython-312.pyc
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-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/database/uniprot.py to uniprot.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/database/__init__.py to __init__.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/database/cath.py to cath.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/database/goa.py to goa.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/measure/measure.py to measure.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/measure/contacts.py to contacts.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/measure/__init__.py to __init__.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/measure/transform.py to transform.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/wwpdb.py to wwpdb.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/cifheader.py to cifheader.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/functions.py to functions.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/emdfile.py to emdfile.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/starfile.py to starfile.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/fixer.py to fixer.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/blastpdb.py to blastpdb.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/pdbclusters.py to pdbclusters.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/waterbridges.py to waterbridges.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/pdbfile.py to pdbfile.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/localpdb.py to localpdb.cpython-312.pyc
-/usr/lib/python3.12/dist-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.'
-/usr/lib/python3.12/dist-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.'
-/usr/lib/python3.12/dist-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.'
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/dssp.py to dssp.cpython-312.pyc
-/usr/lib/python3.12/dist-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*'
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/__init__.py to __init__.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/compare.py to compare.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/ciffile.py to ciffile.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/header.py to header.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/proteins/stride.py to stride.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/ensemble/functions.py to functions.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/ensemble/conformation.py to conformation.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/ensemble/pdbensemble.py to pdbensemble.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/ensemble/ensemble.py to ensemble.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/ensemble/__init__.py to __init__.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/eigtools.py to eigtools.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/doctools.py to doctools.cpython-312.pyc
-/usr/lib/python3.12/dist-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i'
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/seqtools.py to seqtools.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/laptools.py to laptools.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/checkers.py to checkers.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/pathtools.py to pathtools.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/settings.py to settings.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/drawtools.py to drawtools.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/legacy.py to legacy.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/logger.py to logger.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/__init__.py to __init__.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/TreeConstruction.py to TreeConstruction.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/catchall.py to catchall.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/utilities/misctools.py to misctools.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/kdtree/test_kdtree.py to test_kdtree.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/kdtree/__init__.py to __init__.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/trajectory/test_frame.py to test_frame.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/trajectory/test_dcdfile.py to test_dcdfile.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/trajectory/__init__.py to __init__.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/apps/test_prody_catdcd.py to test_prody_catdcd.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/apps/test_prody_anm.py to test_prody_anm.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/apps/test_prody_examples.py to test_prody_examples.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/apps/test_prody_gnm.py to test_prody_gnm.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/apps/__init__.py to __init__.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/apps/test_prody_pca.py to test_prody_pca.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/measure/test_transform.py to test_transform.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/measure/__init__.py to __init__.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/measure/test_measure.py to test_measure.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/measure/test_contacts.py to test_contacts.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/proteins/test_header.py to test_header.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/proteins/test_dssp.py to test_dssp.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/proteins/test_ciffile.py to test_ciffile.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/proteins/test_pdbfile.py to test_pdbfile.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/proteins/test_localpdb.py to test_localpdb.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/proteins/__init__.py to __init__.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/proteins/test_wwpdb.py to test_wwpdb.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/ensemble/test_functions.py to test_functions.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/ensemble/test_conformation.py to test_conformation.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/ensemble/test_pdbensemble.py to test_pdbensemble.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/ensemble/test_ensemble.py to test_ensemble.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/ensemble/__init__.py to __init__.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/utilities/test_pathtools.py to test_pathtools.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/utilities/test_checkers.py to test_checkers.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/utilities/__init__.py to __init__.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/utilities/test_misctools.py to test_misctools.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/datafiles/__init__.py to __init__.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/__init__.py to __init__.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/sequence/test_analysis.py to test_analysis.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/sequence/test_msa.py to test_msa.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/sequence/test_msafile.py to test_msafile.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/sequence/test_sequence.py to test_sequence.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/sequence/__init__.py to __init__.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/dynamics/test_pca.py to test_pca.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/dynamics/test_signature.py to test_signature.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/dynamics/test_enms.py to test_enms.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/dynamics/__init__.py to __init__.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/dynamics/test_editing.py to test_editing.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/atomic/test_atommap.py to test_atommap.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/atomic/test_select.py to test_select.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/atomic/test_atomic.py to test_atomic.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/atomic/test_fragment.py to test_fragment.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/atomic/test_hierview.py to test_hierview.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/atomic/__init__.py to __init__.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/tests/atomic/test_subset.py to test_subset.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/compounds/functions.py to functions.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/compounds/ccd.py to ccd.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/compounds/bird.py to bird.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/compounds/pdbligands.py to pdbligands.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/compounds/__init__.py to __init__.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/domain_decomposition/spectrus.py to spectrus.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/domain_decomposition/__init__.py to __init__.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/__init__.py to __init__.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/sequence/msa.py to msa.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/sequence/analysis.py to analysis.cpython-312.pyc
-/usr/lib/python3.12/dist-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{'
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/sequence/msafile.py to msafile.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/sequence/sequence.py to sequence.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/sequence/plotting.py to plotting.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/sequence/__init__.py to __init__.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/essa.py to essa.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/entropy.py to entropy.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/functions.py to functions.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/sampling.py to sampling.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/editing.py to editing.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/gamma.py to gamma.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/vmdfile.py to vmdfile.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/exgnm.py to exgnm.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/nma.py to nma.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/heatmapper.py to heatmapper.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/signature.py to signature.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/imanm.py to imanm.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/nmdfile.py to nmdfile.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/modeset.py to modeset.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/anm.py to anm.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/pca.py to pca.cpython-312.pyc
-/usr/lib/python3.12/dist-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_'
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/analysis.py to analysis.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/clustenm.py to clustenm.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/mechstiff.py to mechstiff.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/perturb.py to perturb.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/rtb.py to rtb.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/adaptive.py to adaptive.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/gnm.py to gnm.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/mode.py to mode.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/exanm.py to exanm.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/plotting.py to plotting.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/__init__.py to __init__.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/compare.py to compare.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/bbenm.py to bbenm.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/dynamics/bildfile.py to bildfile.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/residue.py to residue.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/subset.py to subset.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/functions.py to functions.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/flags.py to flags.cpython-312.pyc
-/usr/lib/python3.12/dist-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ '
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/nbexclusion.py to nbexclusion.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/hierview.py to hierview.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/crossterm.py to crossterm.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/atommap.py to atommap.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/atom.py to atom.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/chain.py to chain.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/atomic.py to atomic.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/fields.py to fields.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/segment.py to segment.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/select.py to select.cpython-312.pyc
-/usr/lib/python3.12/dist-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|'
-/usr/lib/python3.12/dist-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w'
-/usr/lib/python3.12/dist-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w'
-/usr/lib/python3.12/dist-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d'
-/usr/lib/python3.12/dist-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ '
-/usr/lib/python3.12/dist-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ '
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/angle.py to angle.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/acceptor.py to acceptor.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/dihedral.py to dihedral.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/improper.py to improper.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/atomgroup.py to atomgroup.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/donor.py to donor.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/__init__.py to __init__.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/selection.py to selection.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/pointer.py to pointer.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/atomic/bond.py to bond.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin/hic.py to hic.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin/functions.py to functions.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin/norm.py to norm.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin/cluster.py to cluster.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin/__init__.py to __init__.cpython-312.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/prody/chromatin/straw.py to straw.cpython-312.pyc
-running install_egg_info
-running egg_info
-creating ProDy.egg-info
-writing ProDy.egg-info/PKG-INFO
-writing dependency_links to ProDy.egg-info/dependency_links.txt
-writing entry points to ProDy.egg-info/entry_points.txt
-writing requirements to ProDy.egg-info/requires.txt
-writing top-level names to ProDy.egg-info/top_level.txt
-writing manifest file 'ProDy.egg-info/SOURCES.txt'
-reading manifest file 'ProDy.egg-info/SOURCES.txt'
-reading manifest template 'MANIFEST.in'
-warning: no files found matching 'prody/*/*/*.c'
-warning: no files found matching 'prody/*/*.cpp'
-warning: no files found matching 'prody/utilities/datafiles/*.txt'
-adding license file 'LICENSE.rst'
-writing manifest file 'ProDy.egg-info/SOURCES.txt'
-Copying ProDy.egg-info to /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.12/dist-packages/ProDy-2.4.1.egg-info
-Skipping SOURCES.txt
-running install_scripts
-Installing evol script to /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/bin
-Installing prody script to /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/bin
-I: pybuild base:305: /usr/bin/python3 setup.py install --root /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody 
-running install
-/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
-!!
+Traceback (most recent call last):
+  File "/build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/dynamics/test_enms.py", line 295, in testBuildMatrixCoordsArray
+    assert_equal(self.getMatrix(), self.getExpected(),
+  File "/usr/lib/python3/dist-packages/numpy/testing/_private/utils.py", line 349, in assert_equal
+    return assert_array_equal(actual, desired, err_msg, verbose)
+           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+  File "/usr/lib/python3/dist-packages/numpy/testing/_private/utils.py", line 985, in assert_array_equal
+    assert_array_compare(operator.__eq__, x, y, err_msg=err_msg,
+  File "/usr/lib/python3.11/contextlib.py", line 81, in inner
+    return func(*args, **kwds)
+           ^^^^^^^^^^^^^^^^^^^
+  File "/usr/lib/python3/dist-packages/numpy/testing/_private/utils.py", line 862, in assert_array_compare
+    raise AssertionError(msg)
+AssertionError: 
+Arrays are not equal
+failed to get correct matrix
+Mismatched elements: 3 / 51984 (0.00577%)
+Max absolute difference: 4.4408921e-16
+Max relative difference: 7.83963072e-16
+ x: array([[ 6.913751,  0.021868,  0.94014 , ...,  0.      ,  0.      ,
+         0.      ],
+       [ 0.021868,  9.066915, -0.076779, ...,  0.      ,  0.      ,...
+ y: array([[ 6.913751,  0.021868,  0.94014 , ...,  0.      ,  0.      ,
+         0.      ],
+       [ 0.021868,  9.066915, -0.076779, ...,  0.      ,  0.      ,...
 
-        ********************************************************************************
-        Please avoid running ``setup.py`` directly.
-        Instead, use pypa/build, pypa/installer or other
-        standards-based tools.
-
-        See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
-        ********************************************************************************
+----------------------------------------------------------------------
+Ran 971 tests in 112.788s
 
-!!
-  self.initialize_options()
-running build
-running build_py
-running build_ext
-running install_lib
-creating /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11
-creating /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages
-creating /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody
-creating /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/kdtree
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/kdtree/_CKDTree.cpython-311-i386-linux-gnu.so -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/kdtree
-creating /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/kdtree/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/kdtree/__pycache__/kdtree.cpython-311.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/kdtree/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/kdtree/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/kdtree/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/kdtree/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/kdtree
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/kdtree/kdtree.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/kdtree
-creating /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/trajectory/trajbase.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory
-creating /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/trajectory/__pycache__/trajbase.cpython-311.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/trajectory/__pycache__/psffile.cpython-311.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/trajectory/__pycache__/frame.cpython-311.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/trajectory/__pycache__/trajfile.cpython-311.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/trajectory/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/trajectory/__pycache__/trajectory.cpython-311.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/trajectory/__pycache__/dcdfile.cpython-311.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/trajectory/trajectory.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/trajectory/psffile.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/trajectory/trajfile.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/trajectory/frame.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/trajectory/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/trajectory/dcdfile.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory
-creating /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps
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-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps/prody_biomol.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps/prody_apps/prody_clustenm.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps
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-creating /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/__pycache__
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-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps/apptools.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps
-creating /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps
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-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/apps/evol_apps/evol_conserv.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps
-creating /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps/__pycache__
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-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/tests/proteins/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/proteins
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-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic/chain.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic/atomic.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic
-creating /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic/__pycache__/select.cpython-311.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic/__pycache__/segment.cpython-311.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic/__pycache__/subset.cpython-311.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic/__pycache__/selection.cpython-311.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic/__pycache__/dihedral.cpython-311.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic/__pycache__/nbexclusion.cpython-311.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic/__pycache__/fields.cpython-311.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic/__pycache__/residue.cpython-311.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic/__pycache__/atommap.cpython-311.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic/__pycache__/functions.cpython-311.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic/__pycache__/atomic.cpython-311.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic/__pycache__/hierview.cpython-311.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic/__pycache__/bond.cpython-311.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic/__pycache__/flags.cpython-311.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic/__pycache__/atom.cpython-311.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic/__pycache__/atomgroup.cpython-311.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic/__pycache__/acceptor.cpython-311.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic/__pycache__/pointer.cpython-311.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic/__pycache__/improper.cpython-311.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic/__pycache__/angle.cpython-311.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic/__pycache__/crossterm.cpython-311.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic/__pycache__/chain.cpython-311.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic/__pycache__/donor.cpython-311.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic/fields.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic/segment.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic/select.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic/angle.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic/acceptor.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic/dihedral.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic/improper.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic/atomgroup.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic/donor.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic/selection.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic/pointer.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/atomic/bond.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic
-creating /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/chromatin/hic.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/chromatin/functions.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/chromatin/norm.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/chromatin/cluster.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin
-creating /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/chromatin/__pycache__/functions.cpython-311.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/chromatin/__pycache__/norm.cpython-311.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/chromatin/__pycache__/hic.cpython-311.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/chromatin/__pycache__/cluster.cpython-311.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/chromatin/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin/__pycache__
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/chromatin/__init__.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin
-copying /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build/prody/chromatin/straw.py -> /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/kdtree/__init__.py to __init__.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/kdtree/kdtree.py to kdtree.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory/trajbase.py to trajbase.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory/trajectory.py to trajectory.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory/psffile.py to psffile.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory/trajfile.py to trajfile.cpython-311.pyc
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-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/trajectory/dcdfile.py to dcdfile.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/prody_contacts.py to prody_contacts.cpython-311.pyc
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-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/nmaoptions.py to nmaoptions.cpython-311.pyc
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-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/prody_catdcd.py to prody_catdcd.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/__init__.py to __init__.cpython-311.pyc
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-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/prody_apps/prody_anm.py to prody_anm.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/apptools.py to apptools.cpython-311.pyc
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-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps/evol_fetch.py to evol_fetch.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps/evol_conserv.py to evol_conserv.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps/evol_refine.py to evol_refine.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps/evol_rankorder.py to evol_rankorder.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps/evol_merge.py to evol_merge.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps/evol_filter.py to evol_filter.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps/evol_search.py to evol_search.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps/__init__.py to __init__.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps/evol_occupancy.py to evol_occupancy.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/apps/evol_apps/evol_coevol.py to evol_coevol.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/database/dali.py to dali.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/database/pfam.py to pfam.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/database/quartataweb.py to quartataweb.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/database/uniprot.py to uniprot.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/database/__init__.py to __init__.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/database/cath.py to cath.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/database/goa.py to goa.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/measure/measure.py to measure.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/measure/contacts.py to contacts.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/measure/__init__.py to __init__.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/measure/transform.py to transform.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/wwpdb.py to wwpdb.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/cifheader.py to cifheader.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/functions.py to functions.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/emdfile.py to emdfile.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/starfile.py to starfile.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/fixer.py to fixer.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/blastpdb.py to blastpdb.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/pdbclusters.py to pdbclusters.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/waterbridges.py to waterbridges.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/pdbfile.py to pdbfile.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/localpdb.py to localpdb.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/dssp.py to dssp.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/__init__.py to __init__.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/compare.py to compare.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/ciffile.py to ciffile.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/header.py to header.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/proteins/stride.py to stride.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/ensemble/functions.py to functions.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/ensemble/conformation.py to conformation.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/ensemble/pdbensemble.py to pdbensemble.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/ensemble/ensemble.py to ensemble.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/ensemble/__init__.py to __init__.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/eigtools.py to eigtools.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/doctools.py to doctools.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/seqtools.py to seqtools.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/laptools.py to laptools.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/checkers.py to checkers.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/pathtools.py to pathtools.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/settings.py to settings.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/drawtools.py to drawtools.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/legacy.py to legacy.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/logger.py to logger.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/__init__.py to __init__.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/TreeConstruction.py to TreeConstruction.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/catchall.py to catchall.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/utilities/misctools.py to misctools.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/kdtree/test_kdtree.py to test_kdtree.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/kdtree/__init__.py to __init__.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/trajectory/test_frame.py to test_frame.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/trajectory/test_dcdfile.py to test_dcdfile.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/trajectory/__init__.py to __init__.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/apps/test_prody_catdcd.py to test_prody_catdcd.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/apps/test_prody_anm.py to test_prody_anm.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/apps/test_prody_examples.py to test_prody_examples.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/apps/test_prody_gnm.py to test_prody_gnm.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/apps/__init__.py to __init__.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/apps/test_prody_pca.py to test_prody_pca.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/measure/test_transform.py to test_transform.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/measure/__init__.py to __init__.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/measure/test_measure.py to test_measure.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/measure/test_contacts.py to test_contacts.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/proteins/test_header.py to test_header.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/proteins/test_dssp.py to test_dssp.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/proteins/test_ciffile.py to test_ciffile.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/proteins/test_pdbfile.py to test_pdbfile.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/proteins/test_localpdb.py to test_localpdb.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/proteins/__init__.py to __init__.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/proteins/test_wwpdb.py to test_wwpdb.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/ensemble/test_functions.py to test_functions.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/ensemble/test_conformation.py to test_conformation.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/ensemble/test_pdbensemble.py to test_pdbensemble.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/ensemble/test_ensemble.py to test_ensemble.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/ensemble/__init__.py to __init__.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/utilities/test_pathtools.py to test_pathtools.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/utilities/test_checkers.py to test_checkers.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/utilities/__init__.py to __init__.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/utilities/test_misctools.py to test_misctools.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/datafiles/__init__.py to __init__.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/__init__.py to __init__.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/sequence/test_analysis.py to test_analysis.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/sequence/test_msa.py to test_msa.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/sequence/test_msafile.py to test_msafile.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/sequence/test_sequence.py to test_sequence.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/sequence/__init__.py to __init__.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/dynamics/test_pca.py to test_pca.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/dynamics/test_signature.py to test_signature.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/dynamics/test_enms.py to test_enms.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/dynamics/__init__.py to __init__.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/dynamics/test_editing.py to test_editing.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/atomic/test_atommap.py to test_atommap.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/atomic/test_select.py to test_select.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/atomic/test_atomic.py to test_atomic.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/atomic/test_fragment.py to test_fragment.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/atomic/test_hierview.py to test_hierview.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/atomic/__init__.py to __init__.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/tests/atomic/test_subset.py to test_subset.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/compounds/functions.py to functions.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/compounds/ccd.py to ccd.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/compounds/bird.py to bird.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/compounds/pdbligands.py to pdbligands.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/compounds/__init__.py to __init__.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/domain_decomposition/spectrus.py to spectrus.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/domain_decomposition/__init__.py to __init__.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/__init__.py to __init__.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/sequence/msa.py to msa.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/sequence/analysis.py to analysis.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/sequence/msafile.py to msafile.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/sequence/sequence.py to sequence.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/sequence/plotting.py to plotting.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/sequence/__init__.py to __init__.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/essa.py to essa.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/entropy.py to entropy.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/functions.py to functions.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/sampling.py to sampling.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/editing.py to editing.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/gamma.py to gamma.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/vmdfile.py to vmdfile.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/exgnm.py to exgnm.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/nma.py to nma.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/heatmapper.py to heatmapper.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/signature.py to signature.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/imanm.py to imanm.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/nmdfile.py to nmdfile.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/modeset.py to modeset.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/anm.py to anm.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/pca.py to pca.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/analysis.py to analysis.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/clustenm.py to clustenm.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/mechstiff.py to mechstiff.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/perturb.py to perturb.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/rtb.py to rtb.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/adaptive.py to adaptive.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/gnm.py to gnm.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/mode.py to mode.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/exanm.py to exanm.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/plotting.py to plotting.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/__init__.py to __init__.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/compare.py to compare.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/bbenm.py to bbenm.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/dynamics/bildfile.py to bildfile.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/residue.py to residue.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/subset.py to subset.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/functions.py to functions.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/flags.py to flags.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/nbexclusion.py to nbexclusion.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/hierview.py to hierview.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/crossterm.py to crossterm.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/atommap.py to atommap.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/atom.py to atom.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/chain.py to chain.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/atomic.py to atomic.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/fields.py to fields.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/segment.py to segment.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/select.py to select.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/angle.py to angle.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/acceptor.py to acceptor.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/dihedral.py to dihedral.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/improper.py to improper.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/atomgroup.py to atomgroup.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/donor.py to donor.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/__init__.py to __init__.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/selection.py to selection.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/pointer.py to pointer.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/atomic/bond.py to bond.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin/hic.py to hic.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin/functions.py to functions.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin/norm.py to norm.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin/cluster.py to cluster.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin/__init__.py to __init__.cpython-311.pyc
-byte-compiling /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/prody/chromatin/straw.py to straw.cpython-311.pyc
-running install_egg_info
-running egg_info
-writing ProDy.egg-info/PKG-INFO
-writing dependency_links to ProDy.egg-info/dependency_links.txt
-writing entry points to ProDy.egg-info/entry_points.txt
-writing requirements to ProDy.egg-info/requires.txt
-writing top-level names to ProDy.egg-info/top_level.txt
-reading manifest file 'ProDy.egg-info/SOURCES.txt'
-reading manifest template 'MANIFEST.in'
-warning: no files found matching 'prody/*/*/*.c'
-warning: no files found matching 'prody/*/*.cpp'
-warning: no files found matching 'prody/utilities/datafiles/*.txt'
-adding license file 'LICENSE.rst'
-writing manifest file 'ProDy.egg-info/SOURCES.txt'
-Copying ProDy.egg-info to /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/lib/python3.11/dist-packages/ProDy-2.4.1.egg-info
-Skipping SOURCES.txt
-running install_scripts
-Installing evol script to /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/bin
-Installing prody script to /build/reproducible-path/prody-2.4.1+dfsg/debian/python3-prody/usr/bin
-   debian/rules override_dh_install
-make[1]: Entering directory '/build/reproducible-path/prody-2.4.1+dfsg'
-for VERSION in $(py3versions --supported); \
-do \
-	mkdir --parents debian/python3-prody-tests/usr/lib/${VERSION}/dist-packages/prody; \
-	mv debian/python3-prody/usr/lib/${VERSION}/dist-packages/prody/tests debian/python3-prody-tests/usr/lib/${VERSION}/dist-packages/prody; \
-done
-dh_install
-make[1]: Leaving directory '/build/reproducible-path/prody-2.4.1+dfsg'
-   dh_installdocs -O--buildsystem=pybuild
-   dh_installchangelogs -O--buildsystem=pybuild
-   dh_installman -O--buildsystem=pybuild
-   dh_python3 -O--buildsystem=pybuild
-   dh_installsystemduser -O--buildsystem=pybuild
-   dh_perl -O--buildsystem=pybuild
-   dh_link -O--buildsystem=pybuild
-   dh_strip_nondeterminism -O--buildsystem=pybuild
-   dh_compress -O--buildsystem=pybuild
-   dh_fixperms -O--buildsystem=pybuild
-   dh_missing -O--buildsystem=pybuild
-   dh_dwz -a -O--buildsystem=pybuild
-   dh_strip -a -O--buildsystem=pybuild
-   dh_makeshlibs -a -O--buildsystem=pybuild
-   dh_shlibdeps -a -O--buildsystem=pybuild
-   dh_installdeb -O--buildsystem=pybuild
-   dh_numpy3 -O--buildsystem=pybuild
-   dh_gencontrol -O--buildsystem=pybuild
-dpkg-gencontrol: warning: Provides field of package python3-prody: substitution variable ${python3:Provides} used, but is not defined
-dpkg-gencontrol: warning: Provides field of package python3-prody: substitution variable ${python3:Provides} used, but is not defined
-   dh_md5sums -O--buildsystem=pybuild
-   dh_builddeb -O--buildsystem=pybuild
-dpkg-deb: building package 'python3-prody-dbgsym' in '../python3-prody-dbgsym_2.4.1+dfsg-2_i386.deb'.
-dpkg-deb: building package 'python3-prody-tests' in '../python3-prody-tests_2.4.1+dfsg-2_all.deb'.
-dpkg-deb: building package 'python3-prody' in '../python3-prody_2.4.1+dfsg-2_i386.deb'.
- dpkg-genbuildinfo --build=binary -O../prody_2.4.1+dfsg-2_i386.buildinfo
- dpkg-genchanges --build=binary -O../prody_2.4.1+dfsg-2_i386.changes
-dpkg-genchanges: info: binary-only upload (no source code included)
- dpkg-source --after-build .
-dpkg-buildpackage: info: binary-only upload (no source included)
-dpkg-genchanges: info: not including original source code in upload
+FAILED (failures=1, skipped=39)
+E: pybuild pybuild:389: test: plugin distutils failed with: exit code=1: cd /build/reproducible-path/prody-2.4.1+dfsg/.pybuild/cpython3_3.11_prody/build; python3.11 -m unittest discover -v 
+dh_auto_test: error: pybuild --test -i python{version} -p "3.12 3.11" returned exit code 13
+make: *** [debian/rules:6: binary] Error 25
+dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
 I: copying local configuration
+E: Failed autobuilding of package
+I: user script /srv/workspace/pbuilder/17053/tmp/hooks/C01_cleanup starting
+debug output: disk usage on i-capture-the-hostname at Fri Apr 18 18:27:59 UTC 2025
+Filesystem      Size  Used Avail Use% Mounted on
+tmpfs           3.9G     0  3.9G   0% /dev/shm
+
+I: user script /srv/workspace/pbuilder/17053/tmp/hooks/C01_cleanup finished
 I: unmounting dev/ptmx filesystem
 I: unmounting dev/pts filesystem
 I: unmounting dev/shm filesystem
 I: unmounting proc filesystem
 I: unmounting sys filesystem
 I: cleaning the build env 
-I: removing directory /srv/workspace/pbuilder/4409 and its subdirectories
-I: Current time: Fri Mar 15 23:57:05 -12 2024
-I: pbuilder-time-stamp: 1710590225
+I: removing directory /srv/workspace/pbuilder/17053 and its subdirectories