Diff of the two buildlogs:
--
--- b1/build.log 2025-03-11 23:11:54.318516713 +0000
+++ b2/build.log 2025-03-11 23:12:43.352303650 +0000
@@ -1,6 +1,6 @@
I: pbuilder: network access will be disabled during build
-I: Current time: Tue Mar 11 11:10:42 -12 2025
-I: pbuilder-time-stamp: 1741734642
+I: Current time: Tue Apr 14 19:35:00 +14 2026
+I: pbuilder-time-stamp: 1776144900
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
@@ -23,54 +23,86 @@
dpkg-source: info: unpacking packmol_20.16.0-1.debian.tar.xz
I: using fakeroot in build.
I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/40497/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/63710/tmp/hooks/D01_modify_environment starting
+debug: Running on ionos6-i386.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+'/bin/sh' -> '/bin/bash'
+lrwxrwxrwx 1 root root 9 Apr 14 05:35 /bin/sh -> /bin/bash
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/63710/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/63710/tmp/hooks/D02_print_environment starting
I: set
- BUILDDIR='/build/reproducible-path'
- BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
- BUILDUSERNAME='pbuilder1'
- BUILD_ARCH='i386'
- DEBIAN_FRONTEND='noninteractive'
- DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 '
- DISTRIBUTION='unstable'
- HOME='/root'
- HOST_ARCH='i386'
+ BASH=/bin/sh
+ BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
+ BASH_ALIASES=()
+ BASH_ARGC=()
+ BASH_ARGV=()
+ BASH_CMDS=()
+ BASH_LINENO=([0]="12" [1]="0")
+ BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
+ BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
+ BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="i686-pc-linux-gnu")
+ BASH_VERSION='5.2.37(1)-release'
+ BUILDDIR=/build/reproducible-path
+ BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+ BUILDUSERNAME=pbuilder2
+ BUILD_ARCH=i386
+ DEBIAN_FRONTEND=noninteractive
+ DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=21 '
+ DIRSTACK=()
+ DISTRIBUTION=unstable
+ EUID=0
+ FUNCNAME=([0]="Echo" [1]="main")
+ GROUPS=()
+ HOME=/root
+ HOSTNAME=i-capture-the-hostname
+ HOSTTYPE=i686
+ HOST_ARCH=i386
IFS='
'
- INVOCATION_ID='5a28b9afaf944602904cc9ba40cb650b'
- LANG='C'
- LANGUAGE='en_US:en'
- LC_ALL='C'
- LD_LIBRARY_PATH='/usr/lib/libeatmydata'
- LD_PRELOAD='libeatmydata.so'
- MAIL='/var/mail/root'
- OPTIND='1'
- PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
- PBCURRENTCOMMANDLINEOPERATION='build'
- PBUILDER_OPERATION='build'
- PBUILDER_PKGDATADIR='/usr/share/pbuilder'
- PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
- PBUILDER_SYSCONFDIR='/etc'
- PPID='40497'
- PS1='# '
- PS2='> '
+ INVOCATION_ID=02accd8289154371987a2ea0053e320f
+ LANG=C
+ LANGUAGE=de_CH:de
+ LC_ALL=C
+ LD_LIBRARY_PATH=/usr/lib/libeatmydata
+ LD_PRELOAD=libeatmydata.so
+ MACHTYPE=i686-pc-linux-gnu
+ MAIL=/var/mail/root
+ OPTERR=1
+ OPTIND=1
+ OSTYPE=linux-gnu
+ PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
+ PBCURRENTCOMMANDLINEOPERATION=build
+ PBUILDER_OPERATION=build
+ PBUILDER_PKGDATADIR=/usr/share/pbuilder
+ PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
+ PBUILDER_SYSCONFDIR=/etc
+ PIPESTATUS=([0]="0")
+ POSIXLY_CORRECT=y
+ PPID=63710
PS4='+ '
- PWD='/'
- SHELL='/bin/bash'
- SHLVL='2'
- SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.5cnZ9vnd/pbuilderrc_TW16 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.5cnZ9vnd/b1 --logfile b1/build.log packmol_20.16.0-1.dsc'
- SUDO_GID='112'
- SUDO_UID='107'
- SUDO_USER='jenkins'
- TERM='unknown'
- TZ='/usr/share/zoneinfo/Etc/GMT+12'
- USER='root'
- _='/usr/bin/systemd-run'
- http_proxy='http://46.16.76.132:3128'
+ PWD=/
+ SHELL=/bin/bash
+ SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
+ SHLVL=3
+ SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.5cnZ9vnd/pbuilderrc_iirB --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.5cnZ9vnd/b2 --logfile b2/build.log packmol_20.16.0-1.dsc'
+ SUDO_GID=112
+ SUDO_UID=107
+ SUDO_USER=jenkins
+ TERM=unknown
+ TZ=/usr/share/zoneinfo/Etc/GMT-14
+ UID=0
+ USER=root
+ _='I: set'
+ http_proxy=http://213.165.73.152:3128
I: uname -a
- Linux ionos2-i386 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux
+ Linux i-capture-the-hostname 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux
I: ls -l /bin
- lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin
-I: user script /srv/workspace/pbuilder/40497/tmp/hooks/D02_print_environment finished
+ lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin
+I: user script /srv/workspace/pbuilder/63710/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
@@ -176,7 +208,7 @@
Get: 64 http://deb.debian.org/debian unstable/main i386 gfortran-14 i386 14.2.0-17 [14.0 kB]
Get: 65 http://deb.debian.org/debian unstable/main i386 gfortran-i686-linux-gnu i386 4:14.2.0-1 [1280 B]
Get: 66 http://deb.debian.org/debian unstable/main i386 gfortran i386 4:14.2.0-1 [1432 B]
-Fetched 56.4 MB in 1s (88.1 MB/s)
+Fetched 56.4 MB in 1s (109 MB/s)
Preconfiguring packages ...
Selecting previously unselected package libproc2-0:i386.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19769 files and directories currently installed.)
@@ -462,7 +494,11 @@
fakeroot is already the newest version (1.37-1).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
-I: Running cd /build/reproducible-path/packmol-20.16.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../packmol_20.16.0-1_source.changes
+I: user script /srv/workspace/pbuilder/63710/tmp/hooks/A99_set_merged_usr starting
+Not re-configuring usrmerge for unstable
+I: user script /srv/workspace/pbuilder/63710/tmp/hooks/A99_set_merged_usr finished
+hostname: Name or service not known
+I: Running cd /build/reproducible-path/packmol-20.16.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../packmol_20.16.0-1_source.changes
dpkg-buildpackage: info: source package packmol
dpkg-buildpackage: info: source version 1:20.16.0-1
dpkg-buildpackage: info: source distribution unstable
@@ -493,7 +529,7 @@
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Check for working Fortran compiler: /usr/bin/f95 - skipped
--- Configuring done (1.3s)
+-- Configuring done (0.3s)
-- Generating done (0.0s)
CMake Warning:
Manually-specified variables were not used by the project:
@@ -510,7 +546,7 @@
-- Build files have been written to: /build/reproducible-path/packmol-20.16.0/obj-i686-linux-gnu
dh_auto_build -O--buildsystem=cmake
- cd obj-i686-linux-gnu && make -j11 "INSTALL=install --strip-program=true" VERBOSE=1
+ cd obj-i686-linux-gnu && make -j21 "INSTALL=install --strip-program=true" VERBOSE=1
make[1]: Entering directory '/build/reproducible-path/packmol-20.16.0/obj-i686-linux-gnu'
/usr/bin/cmake -S/build/reproducible-path/packmol-20.16.0 -B/build/reproducible-path/packmol-20.16.0/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /build/reproducible-path/packmol-20.16.0/obj-i686-linux-gnu/CMakeFiles /build/reproducible-path/packmol-20.16.0/obj-i686-linux-gnu//CMakeFiles/progress.marks
@@ -525,60 +561,95 @@
make[3]: Leaving directory '/build/reproducible-path/packmol-20.16.0/obj-i686-linux-gnu'
make -f CMakeFiles/packmol.dir/build.make CMakeFiles/packmol.dir/build
make[3]: Entering directory '/build/reproducible-path/packmol-20.16.0/obj-i686-linux-gnu'
-[ 2%] Building Fortran object CMakeFiles/packmol.dir/src/ahestetic.f90.o
[ 4%] Building Fortran object CMakeFiles/packmol.dir/src/pbc.f90.o
-[ 9%] Building Fortran object CMakeFiles/packmol.dir/src/sizes.f90.o
-/usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.16.0=. -fstack-protector-strong -Wall -c /build/reproducible-path/packmol-20.16.0/src/ahestetic.f90 -o CMakeFiles/packmol.dir/src/ahestetic.f90.o
-[ 7%] Building Fortran object CMakeFiles/packmol.dir/src/exit_codes.f90.o
-[ 12%] Building Fortran object CMakeFiles/packmol.dir/src/gencan.f.o
+[ 4%] Building Fortran object CMakeFiles/packmol.dir/src/sizes.f90.o
+[ 7%] Building Fortran object CMakeFiles/packmol.dir/src/gencan.f.o
/usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.16.0=. -fstack-protector-strong -Wall -c /build/reproducible-path/packmol-20.16.0/src/sizes.f90 -o CMakeFiles/packmol.dir/src/sizes.f90.o
-[ 14%] Building Fortran object CMakeFiles/packmol.dir/src/flashsort.f90.o
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-[ 19%] Building Fortran object CMakeFiles/packmol.dir/src/gencan_ieee_signal_routines.f90.o
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+[ 9%] Building Fortran object CMakeFiles/packmol.dir/src/gencan_ieee_signal_routines.f90.o
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+[ 14%] Building Fortran object CMakeFiles/packmol.dir/src/swaptypemod.f90.o
+[ 17%] Building Fortran object CMakeFiles/packmol.dir/src/jacobi.f90.o
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+[ 19%] Building Fortran object CMakeFiles/packmol.dir/src/exit_codes.f90.o
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-[ 26%] Building Fortran object CMakeFiles/packmol.dir/src/title.f90.o
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-[ 31%] Building Fortran object CMakeFiles/packmol.dir/src/input.f90.o
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-[ 34%] Building Fortran object CMakeFiles/packmol.dir/src/flashmod.f90.o
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+[ 78%] Building Fortran object CMakeFiles/packmol.dir/src/polartocart.f90.o
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+[ 80%] Building Fortran object CMakeFiles/packmol.dir/src/resetboxes.f90.o
/build/reproducible-path/packmol-20.16.0/src/gencan.f:62:37:
62 | subroutine evalnal(n,x,m,lambda,rho,g,flag)
| 1
Warning: Unused dummy argument 'lambda' at (1) [-Wunused-dummy-argument]
+/usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.16.0=. -fstack-protector-strong -Wall -c /build/reproducible-path/packmol-20.16.0/src/resetboxes.f90 -o CMakeFiles/packmol.dir/src/resetboxes.f90.o
/build/reproducible-path/packmol-20.16.0/src/gencan.f:62:41:
62 | subroutine evalnal(n,x,m,lambda,rho,g,flag)
@@ -614,7 +685,6 @@
3805 | +sigma1,sigma2,sterel,steabs,epsrel,epsabs,infrel,infabs)
| 1
Warning: Unused dummy argument 'infrel' at (1) [-Wunused-dummy-argument]
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/build/reproducible-path/packmol-20.16.0/src/gencan.f:4:36:
4 | subroutine evalal(n,x,m,lambda,rho,f,flag)
@@ -665,54 +735,20 @@
125 | subroutine evalhd(n)
| 1
Warning: Unused dummy argument 'n' at (1) [-Wunused-dummy-argument]
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-[ 85%] Building Fortran object CMakeFiles/packmol.dir/src/computeg.f90.o
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-[ 90%] Building Fortran object CMakeFiles/packmol.dir/src/initial.f90.o
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-[ 92%] Building Fortran object CMakeFiles/packmol.dir/src/getinp.f90.o
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-[ 95%] Building Fortran object CMakeFiles/packmol.dir/src/setsizes.f90.o
-/usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.16.0=. -fstack-protector-strong -Wall -c /build/reproducible-path/packmol-20.16.0/src/setsizes.f90 -o CMakeFiles/packmol.dir/src/setsizes.f90.o
-[ 97%] Building Fortran object CMakeFiles/packmol.dir/src/checkpoint.f90.o
-/usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-20.16.0=. -fstack-protector-strong -Wall -c /build/reproducible-path/packmol-20.16.0/src/checkpoint.f90 -o CMakeFiles/packmol.dir/src/checkpoint.f90.o
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1007 | if(ires.ne.ireslast) then
@@ -723,16 +759,6 @@
992 | integer :: iread, ires, ireslast, nres, ioerr
| ^
note: 'ireslast' was declared here
-/build/reproducible-path/packmol-20.16.0/app/packmol.f90:347:44:
-
- 347 | iratom(icart,iratcount) = iirest
- | ^
-Warning: 'iirest' may be used uninitialized [-Wmaybe-uninitialized]
-/build/reproducible-path/packmol-20.16.0/app/packmol.f90:51:42:
-
- 51 | integer :: i, iline, iiatom, iat, iirest, iratcount, ival
- | ^
-note: 'iirest' was declared here
/build/reproducible-path/packmol-20.16.0/src/output.f90:577:36:
577 | nres = ilres - ifres + 1
@@ -743,6 +769,16 @@
19 | irest, iimol, ichain, iatom, irec, ilres, ifres,&
| ^
note: 'ilres' was declared here
+/build/reproducible-path/packmol-20.16.0/app/packmol.f90:347:44:
+
+ 347 | iratom(icart,iratcount) = iirest
+ | ^
+Warning: 'iirest' may be used uninitialized [-Wmaybe-uninitialized]
+/build/reproducible-path/packmol-20.16.0/app/packmol.f90:51:42:
+
+ 51 | integer :: i, iline, iiatom, iat, iirest, iratcount, ival
+ | ^
+note: 'iirest' was declared here
/build/reproducible-path/packmol-20.16.0/src/gencan.f:3339:72:
3339 | + beta ** 2 * dnorm2
@@ -866,7 +902,7 @@
dh_testroot -O--buildsystem=cmake
dh_prep -O--buildsystem=cmake
dh_auto_install --destdir=debian/packmol/ -O--buildsystem=cmake
- cd obj-i686-linux-gnu && make -j11 install DESTDIR=/build/reproducible-path/packmol-20.16.0/debian/packmol AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
+ cd obj-i686-linux-gnu && make -j21 install DESTDIR=/build/reproducible-path/packmol-20.16.0/debian/packmol AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/build/reproducible-path/packmol-20.16.0/obj-i686-linux-gnu'
/usr/bin/cmake -S/build/reproducible-path/packmol-20.16.0 -B/build/reproducible-path/packmol-20.16.0/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
make -f CMakeFiles/Makefile2 preinstall
@@ -907,12 +943,14 @@
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
+I: user script /srv/workspace/pbuilder/63710/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/63710/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
-I: removing directory /srv/workspace/pbuilder/40497 and its subdirectories
-I: Current time: Tue Mar 11 11:11:53 -12 2025
-I: pbuilder-time-stamp: 1741734713
+I: removing directory /srv/workspace/pbuilder/63710 and its subdirectories
+I: Current time: Tue Apr 14 19:35:39 +14 2026
+I: pbuilder-time-stamp: 1776144939