Diff of the two buildlogs:
--
--- b1/build.log 2025-03-07 19:27:38.337230087 +0000
+++ b2/build.log 2025-03-07 20:35:18.782398982 +0000
@@ -1,6 +1,6 @@
I: pbuilder: network access will be disabled during build
-I: Current time: Thu Apr 9 13:22:11 -12 2026
-I: pbuilder-time-stamp: 1775784131
+I: Current time: Sat Mar 8 09:27:49 +14 2025
+I: pbuilder-time-stamp: 1741375669
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
@@ -33,54 +33,86 @@
dpkg-source: info: applying skip-testMultipleClustalW.patch
I: Not using root during the build.
I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/18805/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/52286/tmp/hooks/D01_modify_environment starting
+debug: Running on ionos12-i386.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+'/bin/sh' -> '/bin/bash'
+lrwxrwxrwx 1 root root 9 Mar 7 19:28 /bin/sh -> /bin/bash
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/52286/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/52286/tmp/hooks/D02_print_environment starting
I: set
- BUILDDIR='/build/reproducible-path'
- BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
- BUILDUSERNAME='pbuilder1'
- BUILD_ARCH='i386'
- DEBIAN_FRONTEND='noninteractive'
- DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 '
- DISTRIBUTION='unstable'
- HOME='/root'
- HOST_ARCH='i386'
+ BASH=/bin/sh
+ BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
+ BASH_ALIASES=()
+ BASH_ARGC=()
+ BASH_ARGV=()
+ BASH_CMDS=()
+ BASH_LINENO=([0]="12" [1]="0")
+ BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
+ BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
+ BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="i686-pc-linux-gnu")
+ BASH_VERSION='5.2.37(1)-release'
+ BUILDDIR=/build/reproducible-path
+ BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+ BUILDUSERNAME=pbuilder2
+ BUILD_ARCH=i386
+ DEBIAN_FRONTEND=noninteractive
+ DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=10 '
+ DIRSTACK=()
+ DISTRIBUTION=unstable
+ EUID=0
+ FUNCNAME=([0]="Echo" [1]="main")
+ GROUPS=()
+ HOME=/root
+ HOSTNAME=i-capture-the-hostname
+ HOSTTYPE=i686
+ HOST_ARCH=i386
IFS='
'
- INVOCATION_ID='7cfcf0a5957a47e8a77627dc2021b741'
- LANG='C'
- LANGUAGE='en_US:en'
- LC_ALL='C'
- LD_LIBRARY_PATH='/usr/lib/libeatmydata'
- LD_PRELOAD='libeatmydata.so'
- MAIL='/var/mail/root'
- OPTIND='1'
- PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
- PBCURRENTCOMMANDLINEOPERATION='build'
- PBUILDER_OPERATION='build'
- PBUILDER_PKGDATADIR='/usr/share/pbuilder'
- PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
- PBUILDER_SYSCONFDIR='/etc'
- PPID='18805'
- PS1='# '
- PS2='> '
+ INVOCATION_ID=9fbed5c0b77e48238a38af6974a64d94
+ LANG=C
+ LANGUAGE=de_CH:de
+ LC_ALL=C
+ LD_LIBRARY_PATH=/usr/lib/libeatmydata
+ LD_PRELOAD=libeatmydata.so
+ MACHTYPE=i686-pc-linux-gnu
+ MAIL=/var/mail/root
+ OPTERR=1
+ OPTIND=1
+ OSTYPE=linux-gnu
+ PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
+ PBCURRENTCOMMANDLINEOPERATION=build
+ PBUILDER_OPERATION=build
+ PBUILDER_PKGDATADIR=/usr/share/pbuilder
+ PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
+ PBUILDER_SYSCONFDIR=/etc
+ PIPESTATUS=([0]="0")
+ POSIXLY_CORRECT=y
+ PPID=52286
PS4='+ '
- PWD='/'
- SHELL='/bin/bash'
- SHLVL='2'
- SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.dL1Be0zF/pbuilderrc_ClOu --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.dL1Be0zF/b1 --logfile b1/build.log openstructure_2.9.2-2.dsc'
- SUDO_GID='112'
- SUDO_UID='107'
- SUDO_USER='jenkins'
- TERM='unknown'
- TZ='/usr/share/zoneinfo/Etc/GMT+12'
- USER='root'
- _='/usr/bin/systemd-run'
- http_proxy='http://213.165.73.152:3128'
+ PWD=/
+ SHELL=/bin/bash
+ SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
+ SHLVL=3
+ SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.dL1Be0zF/pbuilderrc_GTmb --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.dL1Be0zF/b2 --logfile b2/build.log openstructure_2.9.2-2.dsc'
+ SUDO_GID=112
+ SUDO_UID=107
+ SUDO_USER=jenkins
+ TERM=unknown
+ TZ=/usr/share/zoneinfo/Etc/GMT-14
+ UID=0
+ USER=root
+ _='I: set'
+ http_proxy=http://46.16.76.132:3128
I: uname -a
- Linux ionos16-i386 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux
+ Linux i-capture-the-hostname 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux
I: ls -l /bin
- lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin
-I: user script /srv/workspace/pbuilder/18805/tmp/hooks/D02_print_environment finished
+ lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin
+I: user script /srv/workspace/pbuilder/52286/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
@@ -562,7 +594,7 @@
Get: 406 http://deb.debian.org/debian unstable/main i386 python3-pyqt5.sip i386 12.17.0-1+b1 [64.0 kB]
Get: 407 http://deb.debian.org/debian unstable/main i386 python3-pyqt5 i386 5.15.11+dfsg-2 [2273 kB]
Get: 408 http://deb.debian.org/debian unstable/main i386 voronota i386 1.29.4307+ds-1 [2676 kB]
-Fetched 304 MB in 6s (49.5 MB/s)
+Fetched 304 MB in 11s (28.1 MB/s)
Preconfiguring packages ...
Selecting previously unselected package libpython3.13-minimal:i386.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19769 files and directories currently installed.)
@@ -1878,8 +1910,8 @@
Setting up tzdata (2025a-2) ...
Current default time zone: 'Etc/UTC'
-Local time is now: Fri Apr 10 01:23:24 UTC 2026.
-Universal Time is now: Fri Apr 10 01:23:24 UTC 2026.
+Local time is now: Fri Mar 7 19:32:16 UTC 2025.
+Universal Time is now: Fri Mar 7 19:32:16 UTC 2025.
Run 'dpkg-reconfigure tzdata' if you wish to change it.
Setting up libboost-atomic1.83.0:i386 (1.83.0-4.1+b1) ...
@@ -2230,7 +2262,11 @@
Building tag database...
-> Finished parsing the build-deps
I: Building the package
-I: Running cd /build/reproducible-path/openstructure-2.9.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../openstructure_2.9.2-2_source.changes
+I: user script /srv/workspace/pbuilder/52286/tmp/hooks/A99_set_merged_usr starting
+Not re-configuring usrmerge for unstable
+I: user script /srv/workspace/pbuilder/52286/tmp/hooks/A99_set_merged_usr finished
+hostname: Name or service not known
+I: Running cd /build/reproducible-path/openstructure-2.9.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../openstructure_2.9.2-2_source.changes
dpkg-buildpackage: info: source package openstructure
dpkg-buildpackage: info: source version 2.9.2-2
dpkg-buildpackage: info: source distribution unstable
@@ -16534,8 +16570,8 @@
Static Libraries (-DENABLE_STATIC) : OFF
Debian/Ubuntu directory layout (-DUBUNTU_LAYOUT) : ON
Hidden object visibility (-DHIDDEN_VISIBILITY) : OFF
--- Configuring done (2.2s)
--- Generating done (0.6s)
+-- Configuring done (10.7s)
+-- Generating done (2.7s)
CMake Warning:
Manually-specified variables were not used by the project:
@@ -16551,7 +16587,7 @@
-- Build files have been written to: /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu
make[1]: Leaving directory '/build/reproducible-path/openstructure-2.9.2'
dh_auto_build
- cd obj-i686-linux-gnu && make -j22 "INSTALL=install --strip-program=true" VERBOSE=1
+ cd obj-i686-linux-gnu && make -j10 "INSTALL=install --strip-program=true" VERBOSE=1
make[1]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
/usr/bin/cmake -S/build/reproducible-path/openstructure-2.9.2 -B/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/CMakeFiles /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu//CMakeFiles/progress.marks
@@ -16559,1229 +16595,1229 @@
make[2]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make -f modules/base/src/CMakeFiles/create_stage.dir/build.make modules/base/src/CMakeFiles/create_stage.dir/depend
make -f modules/base/pymod/CMakeFiles/subst___init__.py.dir/build.make modules/base/pymod/CMakeFiles/subst___init__.py.dir/depend
-make -f modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/build.make modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/depend
-make -f modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/build.make modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src/CMakeFiles/create_stage.dir/DependInfo.cmake "--color="
-make -f modules/db/pymod/CMakeFiles/ost_db_pymod.dir/build.make modules/db/pymod/CMakeFiles/ost_db_pymod.dir/depend
+make -f modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/build.make modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/base/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/pymod/CMakeFiles/subst___init__.py.dir/DependInfo.cmake "--color="
-make -f modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/build.make modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/depend
-make -f modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/build.make modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/depend
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/base/src/CMakeFiles/create_stage.dir/build.make modules/base/src/CMakeFiles/create_stage.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib
+make -f modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/build.make modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/depend
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/conop/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/DependInfo.cmake "--color="
-make -f modules/gui/share/CMakeFiles/scene_icons.dir/build.make modules/gui/share/CMakeFiles/scene_icons.dir/depend
+make -f modules/db/pymod/CMakeFiles/ost_db_pymod.dir/build.make modules/db/pymod/CMakeFiles/ost_db_pymod.dir/depend
+make -f modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/build.make modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/db/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/pymod/CMakeFiles/ost_db_pymod.dir/DependInfo.cmake "--color="
-make -f modules/gui/share/CMakeFiles/gui_images.dir/build.make modules/gui/share/CMakeFiles/gui_images.dir/depend
-make -f modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/depend
+make -f modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/build.make modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/geom/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/gfx/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/DependInfo.cmake "--color="
-make -f modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/depend
+make -f modules/gui/share/CMakeFiles/scene_icons.dir/build.make modules/gui/share/CMakeFiles/scene_icons.dir/depend
+make -f modules/gui/share/CMakeFiles/gui_images.dir/build.make modules/gui/share/CMakeFiles/gui_images.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/gui/share /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/share /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/share/CMakeFiles/scene_icons.dir/DependInfo.cmake "--color="
-make -f modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/depend
-make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/gui/share /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/share /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/share/CMakeFiles/gui_images.dir/DependInfo.cmake "--color="
-make -f modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/build.make modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/depend
-make -f modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/build.make modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/depend
-make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/DependInfo.cmake "--color="
-make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/DependInfo.cmake "--color="
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-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/DependInfo.cmake "--color="
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-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/img/alg/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/DependInfo.cmake "--color="
-make -f modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/build.make modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/depend
-make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/info/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/pymod/CMakeFiles/ost_info_pymod.dir/DependInfo.cmake "--color="
-make -f modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/build.make modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/depend
-make -f modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/build.make modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/depend
-make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/img/base/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/DependInfo.cmake "--color="
-make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/io/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/pymod/CMakeFiles/ost_io_pymod.dir/DependInfo.cmake "--color="
-make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/DependInfo.cmake "--color="
-make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/DependInfo.cmake "--color="
-make -f modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/build.make modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/depend
-make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/seq/base/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/DependInfo.cmake "--color="
-make -f scripts/CMakeFiles/subst_ost_startup.py.dir/build.make scripts/CMakeFiles/subst_ost_startup.py.dir/depend
-make -f scripts/CMakeFiles/subst_ost_config.dir/build.make scripts/CMakeFiles/subst_ost_config.dir/depend
-make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/DependInfo.cmake "--color="
-make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/scripts /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/scripts /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/scripts/CMakeFiles/subst_ost_startup.py.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
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-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
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-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/base/src/CMakeFiles/create_stage.dir/build.make modules/base/src/CMakeFiles/create_stage.dir/build
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/gui/share /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/share /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/share/CMakeFiles/gui_images.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/bin
make -f modules/base/pymod/CMakeFiles/subst___init__.py.dir/build.make modules/base/pymod/CMakeFiles/subst___init__.py.dir/build
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make -f modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/build.make modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/build
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/build.make modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/build
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make -f modules/db/pymod/CMakeFiles/ost_db_pymod.dir/build.make modules/db/pymod/CMakeFiles/ost_db_pymod.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/pymod && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/openstructure-2.9.2/modules/base/pymod/__init__.py.in -DOUT_FILE=__init__.py -DALL_ADDITIONAL_MODULES=,\'gui\',\'gfx\',\'img\',\'info\' -P /build/reproducible-path/openstructure-2.9.2/cmake_support/substitute.cmake
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/build.make modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/build
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/scripts /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/scripts /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/scripts/CMakeFiles/subst_ost_config.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/./__init__.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./__init__.py
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/build.make modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/build
-make -f modules/gui/share/CMakeFiles/scene_icons.dir/build.make modules/gui/share/CMakeFiles/scene_icons.dir/build
+make -f modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/build.make modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/pymod && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/openstructure-2.9.2/modules/base/pymod/__init__.py.in -DOUT_FILE=__init__.py -DALL_ADDITIONAL_MODULES=,\'gui\',\'gfx\',\'img\',\'info\' -P /build/reproducible-path/openstructure-2.9.2/cmake_support/substitute.cmake
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/db/pymod/./__init__.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/db/./__init__.py
+make -f modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/depend
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/pymod/./__init__.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/geom/./__init__.py
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/gui/share/CMakeFiles/gui_images.dir/build.make modules/gui/share/CMakeFiles/gui_images.dir/build
+make -f modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/build.make modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/./__init__.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./__init__.py
-make -f modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/build
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/DependInfo.cmake "--color="
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/./lga.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./lga.py
+make -f modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/build.make modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/conop/pymod/./__init__.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/conop/./__init__.py
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-make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/db/pymod/./__init__.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/db/./__init__.py
-make -f modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/build
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
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-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/pymod/./__init__.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/geom/./__init__.py
-make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/build.make modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/build
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/pymod/./__init__.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gfx/./__init__.py
+make -f modules/gui/share/CMakeFiles/scene_icons.dir/build.make modules/gui/share/CMakeFiles/scene_icons.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/share/icons/add_icon.png /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/share/openstructure/gui/icons/add_icon.png
-make -f modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/build.make modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/build
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/info/pymod/CMakeFiles/ost_info_pymod.dir/build.make modules/info/pymod/CMakeFiles/ost_info_pymod.dir/build
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/openstructure/libexec
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/build
+[ 0%] Built target subst___init__.py
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/__init__.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/__init__.py
+make -f modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/depend
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/./hbplus.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./hbplus.py
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/DependInfo.cmake "--color="
+make -f modules/gui/share/CMakeFiles/gui_images.dir/build.make modules/gui/share/CMakeFiles/gui_images.dir/build
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/conop/pymod/./cleanup.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/conop/./cleanup.py
+[ 0%] Built target ost_db_pymod
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/tests
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/pymod/./py_gfx_obj.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gfx/./py_gfx_obj.py
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/share/images/logo-small.png /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/share/openstructure/gui/images/logo-small.png
-make -f modules/io/pymod/CMakeFiles/ost_io_pymod.dir/build.make modules/io/pymod/CMakeFiles/ost_io_pymod.dir/build
+make -f modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/color_options_widget.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/color_options_widget.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/share/icons/close_icon.png /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/share/openstructure/gui/icons/close_icon.png
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/./msms.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./msms.py
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/dng/__init__.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/dng/__init__.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/__init__.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/__init__.py
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 0%] Built target ost_geom_pymod
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/color_select_widget.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/color_select_widget.py
+make -f modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/build.make modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/depend
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/img/base/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/DependInfo.cmake "--color="
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 0%] Built target ost_gfx_pymod
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/build
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/share/icons/critical_icon.png /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/share/openstructure/gui/icons/critical_icon.png
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/./__init__.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./__init__.py
+make -f modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/build.make modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/depend
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/./tmtools.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./tmtools.py
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/img/alg/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/dng/termuse.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/dng/termuse.py
+[ 0%] Built target create_stage
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/combo_options_widget.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/combo_options_widget.py
+[ 0%] Built target ost_conop_pymod
+make -f modules/info/pymod/CMakeFiles/ost_info_pymod.dir/build.make modules/info/pymod/CMakeFiles/ost_info_pymod.dir/depend
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/info/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/pymod/CMakeFiles/ost_info_pymod.dir/DependInfo.cmake "--color="
+make -f modules/io/pymod/CMakeFiles/ost_io_pymod.dir/build.make modules/io/pymod/CMakeFiles/ost_io_pymod.dir/depend
+[ 0%] Built target gui_images
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/dng/superpositiondialog.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/dng/superpositiondialog.py
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/io/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/pymod/CMakeFiles/ost_io_pymod.dir/DependInfo.cmake "--color="
+make -f modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/build.make modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/build
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/share/icons/delete_icon.png /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/share/openstructure/gui/icons/delete_icon.png
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/pymod/./__init__.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/img/./__init__.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/./init_context_menu.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./init_context_menu.py
+make -f modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/build.make modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/depend
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/./dssp.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./dssp.py
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/build.make modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/build
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/share/icons/distance_icon.png /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/share/openstructure/gui/icons/distance_icon.png
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/cpk_widget.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/cpk_widget.py
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/pymod/./__init__.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/img/alg/./__init__.py
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/dng/init.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/dng/init.py
+make -f modules/info/pymod/CMakeFiles/ost_info_pymod.dir/build.make modules/info/pymod/CMakeFiles/ost_info_pymod.dir/build
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/custom_widget.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/custom_widget.py
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/pymod/./__init__.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/info/./__init__.py
-make -f modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/build.make modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/build
-make -f modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/build.make modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/build
+make -f modules/io/pymod/CMakeFiles/ost_io_pymod.dir/build.make modules/io/pymod/CMakeFiles/ost_io_pymod.dir/build
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/./init_menubar.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./init_menubar.py
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/pymod/./__init__.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/io/./__init__.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/./clustalw.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./clustalw.py
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/build.make modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/build
-make -f modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/build.make modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/build
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/share/icons/find_icon.png /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/share/openstructure/gui/icons/find_icon.png
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/gradient_editor_widget.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/gradient_editor_widget.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/./init_spacenav.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./init_spacenav.py
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/build.make modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/build
+[ 0%] Built target ost_img_alg_pymod
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod/./__init__.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/./__init__.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/dng/menu.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/dng/menu.py
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/build.make modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/./__init__.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./__init__.py
-make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/pymod/./__init__.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/seq/alg/./__init__.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/./utils.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./utils.py
+[ 0%] Built target ost_img_pymod
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/share/icons/information_icon.png /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/share/openstructure/gui/icons/information_icon.png
+make -f modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/build.make modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/depend
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/pymod/./remote.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/io/./remote.py
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/pymod/./__init__.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/seq/./__init__.py
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f scripts/CMakeFiles/subst_ost_startup.py.dir/build.make scripts/CMakeFiles/subst_ost_startup.py.dir/build
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/seq/base/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/DependInfo.cmake "--color="
+[ 0%] Built target ost_info_pymod
+make -f modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/build.make modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/openstructure-2.9.2/scripts/ost_startup.py.in -DOUT_FILE=ost_startup.py -DBUILD_TYPE=Release -DPython_EXECUTABLE=/usr/bin/python3 -DPython_VERSION=3.13.2 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.13/dist-packages/ -P /build/reproducible-path/openstructure-2.9.2/cmake_support/substitute.cmake
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/bin
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/./init_splash.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./init_splash.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/gradient_info_handler.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/gradient_info_handler.py
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f scripts/CMakeFiles/subst_ost_config.dir/build.make scripts/CMakeFiles/subst_ost_config.dir/build
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/conop/pymod/./cleanup.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/conop/./cleanup.py
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/share/icons/close_icon.png /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/share/openstructure/gui/icons/close_icon.png
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/pymod/./py_gfx_obj.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gfx/./py_gfx_obj.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/./lga.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./lga.py
+make -f modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/build.make modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/build
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/./trajectory_viewer.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./trajectory_viewer.py
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/share/icons/map_icon.png /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/share/openstructure/gui/icons/map_icon.png
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/./naccess.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./naccess.py
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/openstructure-2.9.2/scripts/ost_config.in -DOUT_FILE=ost_config -DBUILD_TYPE=Release -DPython_EXECUTABLE=/usr/bin/python3 -DPython_VERSION=3.13.2 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.13/dist-packages/ -P /build/reproducible-path/openstructure-2.9.2/cmake_support/substitute.cmake
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/dng/termuse.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/dng/termuse.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/./init_context_menu.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./init_context_menu.py
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/color_options_widget.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/color_options_widget.py
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/./__init__.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./__init__.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/pymod/./repository.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/io/./repository.py
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 0%] Built target ost_gui_dng_pymod
+make -f modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/build.make modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/build
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/pymod/./__init__.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/seq/alg/./__init__.py
+make -f scripts/CMakeFiles/subst_ost_startup.py.dir/build.make scripts/CMakeFiles/subst_ost_startup.py.dir/depend
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/pymod/./remote.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/io/./remote.py
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/scripts /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/scripts /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/scripts/CMakeFiles/subst_ost_startup.py.dir/DependInfo.cmake "--color="
+make -f modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/build.make modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/build
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/pymod/./__init__.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/seq/./__init__.py
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/./views.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./views.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/pymod/./mat.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/seq/alg/./mat.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/gradient_list_model.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/gradient_list_model.py
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 0%] Built target ost_geom_pymod
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/openstructure/libexec
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 0%] Built target ost_mol_pymod
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f scripts/CMakeFiles/subst_ost.dir/build.make scripts/CMakeFiles/subst_ost.dir/depend
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/./hbplus.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./hbplus.py
-[ 0%] Built target ost_db_pymod
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/share/icons/critical_icon.png /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/share/openstructure/gui/icons/critical_icon.png
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/dng/superpositiondialog.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/dng/superpositiondialog.py
-make -f scripts/CMakeFiles/subst_dng.dir/build.make scripts/CMakeFiles/subst_dng.dir/depend
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/./hhblits.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./hhblits.py
+[ 0%] Built target ost_mol_pymod
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/./helpwidget.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./helpwidget.py
+make -f scripts/CMakeFiles/subst_ost_startup.py.dir/build.make scripts/CMakeFiles/subst_ost_startup.py.dir/build
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/share/icons/menubar_icon.png /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/share/openstructure/gui/icons/menubar_icon.png
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/gradient_preset_widget.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/gradient_preset_widget.py
+[ 0%] Built target ost_seq_pymod
+make -f scripts/CMakeFiles/subst_ost_config.dir/build.make scripts/CMakeFiles/subst_ost_config.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/scripts /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/scripts /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/scripts/CMakeFiles/subst_ost.dir/DependInfo.cmake "--color="
-[ 0%] Built target subst___init__.py
-make -f actions/CMakeFiles/actions.dir/build.make actions/CMakeFiles/actions.dir/depend
-[ 0%] Built target gui_images
-[ 0%] Built target ost_img_pymod
-[ 0%] Built target ost_info_pymod
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/./init_menubar.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./init_menubar.py
-make -f modules/base/pymod/CMakeFiles/ost_base_pymod.dir/build.make modules/base/pymod/CMakeFiles/ost_base_pymod.dir/depend
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/color_select_widget.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/color_select_widget.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/openstructure-2.9.2/scripts/ost_startup.py.in -DOUT_FILE=ost_startup.py -DBUILD_TYPE=Release -DPython_EXECUTABLE=/usr/bin/python3 -DPython_VERSION=3.13.2 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.13/dist-packages/ -P /build/reproducible-path/openstructure-2.9.2/cmake_support/substitute.cmake
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/pymod/./mat.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/seq/alg/./mat.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/./superpose.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./superpose.py
+make -f scripts/CMakeFiles/subst_ost.dir/build.make scripts/CMakeFiles/subst_ost.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/scripts /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/scripts /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/scripts/CMakeFiles/subst_dng.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/scripts /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/scripts /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/scripts/CMakeFiles/subst_ost_config.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/actions /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/actions /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/actions/CMakeFiles/actions.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/scripts /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/scripts /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/scripts/CMakeFiles/subst_ost.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/./table.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./table.py
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/pymod/./repository.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/io/./repository.py
+[ 0%] Built target ost_io_pymod
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/share/icons/rigid_body_manipulator_icon.png /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/share/openstructure/gui/icons/rigid_body_manipulator_icon.png
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/./hhblits2.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./hhblits2.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/hsc_widget.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/hsc_widget.py
+make -f scripts/CMakeFiles/subst_dng.dir/build.make scripts/CMakeFiles/subst_dng.dir/depend
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/pymod/./renumber.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/seq/alg/./renumber.py
-make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/base/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/pymod/CMakeFiles/ost_base_pymod.dir/DependInfo.cmake "--color="
-[ 0%] Built target ost_img_alg_pymod
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/./superpose.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./superpose.py
-[ 0%] Built target subst_ost_startup.py
-[ 0%] Built target ost_seq_pymod
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f scripts/CMakeFiles/subst_ost.dir/build.make scripts/CMakeFiles/subst_ost.dir/build
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/tests
-make -f scripts/CMakeFiles/subst_dng.dir/build.make scripts/CMakeFiles/subst_dng.dir/build
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/openstructure-2.9.2/scripts/ost.in -DOUT_FILE=ost -DBUILD_TYPE=Release -DPython_EXECUTABLE=/usr/bin/python3 -DPython_VERSION=3.13.2 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.13/dist-packages/ -P /build/reproducible-path/openstructure-2.9.2/cmake_support/substitute.cmake
-[ 0%] Built target ost_gfx_pymod
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/openstructure-2.9.2/scripts/dng.in -DOUT_FILE=dng -DBUILD_TYPE=Release -DPython_EXECUTABLE=/usr/bin/python3 -DPython_VERSION=3.13.2 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.13/dist-packages/ -P /build/reproducible-path/openstructure-2.9.2/cmake_support/substitute.cmake
-[ 0%] Built target ost_conop_pymod
-make -f modules/base/pymod/CMakeFiles/ost_base_pymod.dir/build.make modules/base/pymod/CMakeFiles/ost_base_pymod.dir/build
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/scripts /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/scripts /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/scripts/CMakeFiles/subst_dng.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/./qsscoring.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./qsscoring.py
-[ 0%] Built target subst_ost_config
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/./msms.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./msms.py
+make -f scripts/CMakeFiles/subst_ost_config.dir/build.make scripts/CMakeFiles/subst_ost_config.dir/build
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/./gosty_startup.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./gosty_startup.py
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/pymod/./settings.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/./settings.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/share/icons/delete_icon.png /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/share/openstructure/gui/icons/delete_icon.png
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/dng/init.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/dng/init.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/./init_spacenav.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./init_spacenav.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/openstructure-2.9.2/scripts/ost_config.in -DOUT_FILE=ost_config -DBUILD_TYPE=Release -DPython_EXECUTABLE=/usr/bin/python3 -DPython_VERSION=3.13.2 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.13/dist-packages/ -P /build/reproducible-path/openstructure-2.9.2/cmake_support/substitute.cmake
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/share/icons/selection_icon.png /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/share/openstructure/gui/icons/selection_icon.png
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f scripts/CMakeFiles/subst_ost.dir/build.make scripts/CMakeFiles/subst_ost.dir/build
+[ 0%] Built target subst_ost_startup.py
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/pymod/./aaindex.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/seq/alg/./aaindex.py
-make -f actions/CMakeFiles/actions.dir/build.make actions/CMakeFiles/actions.dir/build
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/combo_options_widget.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/combo_options_widget.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/immutable_gradient_info_handler.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/immutable_gradient_info_handler.py
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/openstructure-2.9.2/scripts/ost.in -DOUT_FILE=ost -DBUILD_TYPE=Release -DPython_EXECUTABLE=/usr/bin/python3 -DPython_VERSION=3.13.2 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.13/dist-packages/ -P /build/reproducible-path/openstructure-2.9.2/cmake_support/substitute.cmake
+make -f actions/CMakeFiles/actions.dir/build.make actions/CMakeFiles/actions.dir/depend
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/actions/ost-compare-ligand-structures /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/openstructure/libexec/ost-compare-ligand-structures
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/actions /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/actions /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/actions/CMakeFiles/actions.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/./hhblits3.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./hhblits3.py
+make -f scripts/CMakeFiles/subst_dng.dir/build.make scripts/CMakeFiles/subst_dng.dir/build
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/openstructure-2.9.2/scripts/dng.in -DOUT_FILE=dng -DBUILD_TYPE=Release -DPython_EXECUTABLE=/usr/bin/python3 -DPython_VERSION=3.13.2 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.13/dist-packages/ -P /build/reproducible-path/openstructure-2.9.2/cmake_support/substitute.cmake
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/./trajectory_analysis.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./trajectory_analysis.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/share/icons/distance_icon.png /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/share/openstructure/gui/icons/distance_icon.png
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/./tmtools.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./tmtools.py
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/dng/menu.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/dng/menu.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/./init_splash.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./init_splash.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/./blast.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./blast.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/share/icons/show_sidebar_icon.png /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/share/openstructure/gui/icons/show_sidebar_icon.png
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/actions/ost-compare-structures /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/openstructure/libexec/ost-compare-structures
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/pymod/./stutil.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/./stutil.py
-[ 0%] Built target ost_io_pymod
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/cpk_widget.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/cpk_widget.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/immutable_preset_info_handler.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/immutable_preset_info_handler.py
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/pymod/aaindex1 /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/share/openstructure/aaindex/aaindex1
-[ 0%] Built target create_stage
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/./dssp.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./dssp.py
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f actions/CMakeFiles/actions.dir/build.make actions/CMakeFiles/actions.dir/build
+[ 0%] Built target ost_gui_pymod
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/actions/ost-compare-ligand-structures /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/openstructure/libexec/ost-compare-ligand-structures
make -f modules/geom/src/CMakeFiles/ost_geom_headers.dir/build.make modules/geom/src/CMakeFiles/ost_geom_headers.dir/depend
+[ 0%] Built target subst_ost_config
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/./structure_analysis.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./structure_analysis.py
make -f modules/config/CMakeFiles/ost_config_headers.dir/build.make modules/config/CMakeFiles/ost_config_headers.dir/depend
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/share/icons/find_icon.png /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/share/openstructure/gui/icons/find_icon.png
-make -f modules/base/src/CMakeFiles/ost_base_headers.dir/build.make modules/base/src/CMakeFiles/ost_base_headers.dir/depend
-make -f modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/depend
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/./trajectory_viewer.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./trajectory_viewer.py
-make -f modules/info/src/CMakeFiles/ost_info_headers.dir/build.make modules/info/src/CMakeFiles/ost_info_headers.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/geom/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src/CMakeFiles/ost_geom_headers.dir/DependInfo.cmake "--color="
-make -f modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/depend
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/./cadscore.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./cadscore.py
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/config /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/config /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/config/CMakeFiles/ost_config_headers.dir/DependInfo.cmake "--color="
-make -f modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/depend
+[ 0%] Built target subst_ost
+make -f modules/base/src/CMakeFiles/ost_base_headers.dir/build.make modules/base/src/CMakeFiles/ost_base_headers.dir/depend
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/init_inspector.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/init_inspector.py
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/share/icons/site_icon.png /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/share/openstructure/gui/icons/site_icon.png
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src/CMakeFiles/ost_base_headers.dir/DependInfo.cmake "--color="
-make -f modules/conop/src/CMakeFiles/ost_conop_headers.dir/build.make modules/conop/src/CMakeFiles/ost_conop_headers.dir/depend
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/./helix_kinks.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./helix_kinks.py
+make -f modules/geom/src/CMakeFiles/ost_geom_headers.dir/build.make modules/geom/src/CMakeFiles/ost_geom_headers.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/DependInfo.cmake "--color="
-make -f modules/db/src/CMakeFiles/ost_db_headers.dir/build.make modules/db/src/CMakeFiles/ost_db_headers.dir/depend
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/export_helper/vector.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/export_helper/vector.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/pymod/aaindex2 /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/share/openstructure/aaindex/aaindex2
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/share/icons/split_icon.png /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/share/openstructure/gui/icons/split_icon.png
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/actions/ost-compare-structures /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/openstructure/libexec/ost-compare-structures
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/./kclust.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./kclust.py
+make -f modules/config/CMakeFiles/ost_config_headers.dir/build.make modules/config/CMakeFiles/ost_config_headers.dir/build
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/info/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src/CMakeFiles/ost_info_headers.dir/DependInfo.cmake "--color="
-make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/depend
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/config/./base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./base.hh
[ 0%] Built target subst_dng
+make -f modules/base/src/CMakeFiles/ost_base_headers.dir/build.make modules/base/src/CMakeFiles/ost_base_headers.dir/build
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./def.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./def.hh
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/export_helper/generic_property_def.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/export_helper/generic_property_def.hh
+make -f modules/base/pymod/CMakeFiles/ost_base_pymod.dir/build.make modules/base/pymod/CMakeFiles/ost_base_pymod.dir/depend
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/inspector_widget.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/inspector_widget.py
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/DependInfo.cmake "--color="
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/bindings/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/DependInfo.cmake "--color="
-make -f modules/img/base/src/CMakeFiles/ost_img_headers.dir/build.make modules/img/base/src/CMakeFiles/ost_img_headers.dir/depend
-make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/conop/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src/CMakeFiles/ost_conop_headers.dir/DependInfo.cmake "--color="
-make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/db/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/src/CMakeFiles/ost_db_headers.dir/DependInfo.cmake "--color="
-make -f modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/depend
-make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/base/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/pymod/CMakeFiles/ost_base_pymod.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/actions/ost-compare-structures-legacy /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/openstructure/libexec/ost-compare-structures-legacy
-make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/img/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src/CMakeFiles/ost_img_headers.dir/DependInfo.cmake "--color="
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/pymod/./table.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/./table.py
-[ 0%] Built target subst_ost
-make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/DependInfo.cmake "--color="
-make -f modules/io/src/CMakeFiles/ost_io_headers.dir/build.make modules/io/src/CMakeFiles/ost_io_headers.dir/depend
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/io/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src/CMakeFiles/ost_io_headers.dir/DependInfo.cmake "--color="
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/custom_widget.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/custom_widget.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/./clustalw.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./clustalw.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/./helix_kinks.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./helix_kinks.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/share/icons/information_icon.png /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/share/openstructure/gui/icons/information_icon.png
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/./helpwidget.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./helpwidget.py
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/geom/src/CMakeFiles/ost_geom_headers.dir/build.make modules/geom/src/CMakeFiles/ost_geom_headers.dir/build
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/share/icons/warning_icon.png /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/share/openstructure/gui/icons/warning_icon.png
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/./hbond.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./hbond.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/pymod/aaindex3 /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/share/openstructure/aaindex/aaindex3
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/./ialign.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./ialign.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./exc.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./exc.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/config/./config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./config.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/map_level_widget.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/map_level_widget.py
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/export_helper/pair_to_tuple_conv.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/export_helper/pair_to_tuple_conv.hh
+make -f modules/base/pymod/CMakeFiles/ost_base_pymod.dir/build.make modules/base/pymod/CMakeFiles/ost_base_pymod.dir/build
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/pymod/./settings.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/./settings.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/./lddt.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./lddt.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/./mmseqs2.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./mmseqs2.py
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/preset.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/preset.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./geom.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./geom.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/share/icons/refresh.png /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/share/openstructure/gui/icons/refresh.png
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/config/./dllexport.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./dllexport.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/export_helper/vec_to_list_conv.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/export_helper/vec_to_list_conv.hh
+[ 0%] Built target ost_seq_alg_pymod
+make -f modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/depend
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./mat.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./mat.hh
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 0%] Built target ost_gui_dng_pymod
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/./dockq.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./dockq.py
+[ 0%] Built target actions
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/remote.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/remote.py
+make -f modules/info/src/CMakeFiles/ost_info_headers.dir/build.make modules/info/src/CMakeFiles/ost_info_headers.dir/depend
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/pymod/./stutil.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/./stutil.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/./qsscore.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./qsscore.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/config/./version.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./version.hh
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/export_helper/vector.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/export_helper/vector.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/info/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src/CMakeFiles/ost_info_headers.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/test_utils/compare_files.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/test_utils/compare_files.hh
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/config/CMakeFiles/ost_config_headers.dir/build.make modules/config/CMakeFiles/ost_config_headers.dir/build
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/base/src/CMakeFiles/ost_base_headers.dir/build.make modules/base/src/CMakeFiles/ost_base_headers.dir/build
+[ 0%] Built target scene_icons
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/pymod/./table.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/./table.py
make -f modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/impl/sequence_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/impl/sequence_impl.hh
+make -f modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/depend
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/DependInfo.cmake "--color="
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./mat2.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./mat2.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/preset_editor_list_model.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/preset_editor_list_model.py
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make -f modules/info/src/CMakeFiles/ost_info_headers.dir/build.make modules/info/src/CMakeFiles/ost_info_headers.dir/build
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/./scoring.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./scoring.py
+[ 0%] Built target ost_bindings_pymod
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/pymod/./table_selector.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/./table_selector.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/pymod/./xmlrunner.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/./xmlrunner.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/preset_editor_widget.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/preset_editor_widget.py
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./generic_property.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./generic_property.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/pymod/./testutils.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/./testutils.py
make -f modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/export_helper/generic_property_def.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/export_helper/generic_property_def.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./info.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./info.hh
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/config/./base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./base.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/pointer_iterator.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/pointer_iterator.hh
+make -f modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/depend
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/preset_info_handler.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/preset_info_handler.py
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/bindings/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./integrity_error.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./integrity_error.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different __init__.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/__init__.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/atom_group.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/atom_group.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/preset_list_model.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/preset_list_model.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/preset_widget.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/preset_widget.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/render_mode_widget.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/render_mode_widget.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./invalid_handle.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./invalid_handle.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/render_op.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/render_op.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/impl/sequence_impl_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/impl/sequence_impl_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./info_error.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./info_error.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./ptr_observer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./ptr_observer.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/render_options_widget.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/render_options_widget.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./info_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./info_impl.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/impl/sequence_list_impl_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/impl/sequence_list_impl_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./log.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./log.hh
+[ 0%] Built target ost_config_headers
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./mat3.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./mat3.hh
+make -f modules/conop/src/CMakeFiles/ost_conop_headers.dir/build.make modules/conop/src/CMakeFiles/ost_conop_headers.dir/depend
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./info_impl_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./info_impl_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/atom_prop.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/atom_prop.hh
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/conop/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src/CMakeFiles/ost_conop_headers.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/scene_observer_impl.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/scene_observer_impl.py
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make -f modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build
-make -f modules/conop/src/CMakeFiles/ost_conop_headers.dir/build.make modules/conop/src/CMakeFiles/ost_conop_headers.dir/build
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/pymod/./table_selector.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/./table_selector.py
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/bindings/src/./wrap_tmalign.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/bindings/./wrap_tmalign.hh
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./mat4.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./mat4.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/./chain_mapping.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./chain_mapping.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./log_sink.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./log_sink.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/impl/sequence_list_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/impl/sequence_list_impl.hh
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/conop/src/CMakeFiles/ost_conop_headers.dir/build.make modules/conop/src/CMakeFiles/ost_conop_headers.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/impl/sequence_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/impl/sequence_impl.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/conop/src/./conop.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/conop/./conop.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/./stereochemistry.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./stereochemistry.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./profile.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./profile.hh
+[ 0%] Built target ost_base_pymod
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/./dockq.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./dockq.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./info_handle.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./info_handle.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./vec.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./vec.hh
+make -f modules/db/src/CMakeFiles/ost_db_headers.dir/build.make modules/db/src/CMakeFiles/ost_db_headers.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./info.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./info.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/db/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/src/CMakeFiles/ost_db_headers.dir/DependInfo.cmake "--color="
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/conop/src/./processor.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/conop/./processor.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/atom_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/atom_impl.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./dyn_cast.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./dyn_cast.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/./contact_score.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./contact_score.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./info_group.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./info_group.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./vec2.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./vec2.hh
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make -f modules/db/src/CMakeFiles/ost_db_headers.dir/build.make modules/db/src/CMakeFiles/ost_db_headers.dir/build
-make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build
-make -f modules/img/base/src/CMakeFiles/ost_img_headers.dir/build.make modules/img/base/src/CMakeFiles/ost_img_headers.dir/build
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/scene_selection_helper.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/scene_selection_helper.py
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/db/src/./sqlite_wrap.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/db/./sqlite_wrap.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./vec3.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./vec3.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./info_item.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./info_item.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/./ligand_scoring.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./ligand_scoring.py
+[ 0%] Built target ost_bindings_headers
+make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/depend
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/conop/src/./amino_acids.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/conop/./amino_acids.hh
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/pointer_iterator.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/pointer_iterator.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/bindings/src/./wrap_tmalign.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/bindings/./wrap_tmalign.hh
-make -f modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/atom_impl_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/atom_impl_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./stdint.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./stdint.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/db/src/./sqlite_conv.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/db/./sqlite_conv.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/simple_widget.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/simple_widget.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./vec4.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./vec4.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/impl/sequence_list_iterator.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/impl/sequence_list_iterator.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/conop/src/./diag.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/conop/./diag.hh
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/./ligand_scoring_base.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./ligand_scoring_base.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./info_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./info_fw.hh
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/conop/src/./conop.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/conop/./conop.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./alignment_opts.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./alignment_opts.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./vecmat_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./vecmat_op.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/sline_widget.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/sline_widget.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./stdint_msc.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./stdint_msc.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/chain_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/chain_impl.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/db/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/db/./module_config.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./range.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./range.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./clip_alignment.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./clip_alignment.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/./sequence_list.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/./sequence_list.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./module_config.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/conop/src/./model_check.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/conop/./model_check.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/./ligand_scoring_scrmsd.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./ligand_scoring_scrmsd.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./vecmat2_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./vecmat2_op.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/chain_impl_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/chain_impl_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/toolbar_options_widget.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/toolbar_options_widget.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./module_config.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/connector_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/connector_impl.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/./ligand_scoring_lddtpli.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./ligand_scoring_lddtpli.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/db/src/./linear_indexer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/db/./linear_indexer.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./conservation.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./conservation.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/conop/src/./heuristic.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/conop/./heuristic.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/./sequence_handle.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/./sequence_handle.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/trace_widget.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/trace_widget.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./vecmat3_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./vecmat3_op.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./info_path.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./info_path.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/./bb_lddt.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./bb_lddt.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./units.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./units.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/connector_impl_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/connector_impl_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/./alignment_handle.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/./alignment_handle.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/conop/src/./compound.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/conop/./compound.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./vecmat4_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./vecmat4_op.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./info_set.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./info_set.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./contact_prediction_score.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./contact_prediction_score.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/db/src/./binary_container.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/db/./binary_container.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/stereo_data.json /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/share/openstructure/stereo_data.json
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/tube_widget.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/tube_widget.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/conop/src/./compound_lib.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/conop/./compound_lib.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./message.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./message.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/dihedral.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/dihedral.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./circular_iterator.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./circular_iterator.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/db/src/./extract_data_helper.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/db/./extract_data_helper.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/./module_config.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./contact_weight_matrix.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./contact_weight_matrix.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./info_visitor.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./info_visitor.hh
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/uniform_color_widget.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/uniform_color_widget.py
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./platform.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./platform.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/entity_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/entity_impl.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/conop/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/conop/./module_config.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./distance_map.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./distance_map.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./constants.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./constants.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/./sequence_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/./sequence_op.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./info_verbose_visitor.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./info_verbose_visitor.hh
+[ 0%] Built target ost_db_headers
+make -f modules/img/base/src/CMakeFiles/ost_img_headers.dir/build.make modules/img/base/src/CMakeFiles/ost_img_headers.dir/depend
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./entropy.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./entropy.hh
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/db/src/./sqlite_wrap.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/db/./sqlite_wrap.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/img/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src/CMakeFiles/ost_img_headers.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./item_type.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./item_type.hh
+[ 0%] Built target ost_mol_alg_pymod
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/conop/src/./rule_based.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/conop/./rule_based.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/visibility_op.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/visibility_op.py
+make -f modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/depend
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/entity_impl_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/entity_impl_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./composite.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./composite.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./string_ref.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./string_ref.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./geom_info_conversion.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./geom_info_conversion.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/conop/src/./minimal_compound_lib.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/conop/./minimal_compound_lib.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/fragment_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/fragment_impl.hh
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./alignment_opts.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./alignment_opts.hh
-make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/depend
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/line_trace_widget.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/line_trace_widget.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/./aligned_region.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/./aligned_region.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./pod_vector.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./pod_vector.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./composite2.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./composite2.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./global_align.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./global_align.hh
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/img/base/src/CMakeFiles/ost_img_headers.dir/build.make modules/img/base/src/CMakeFiles/ost_img_headers.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/raster_image/raster_image.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/raster_image/raster_image.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/conop/src/./compound_lib_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/conop/./compound_lib_base.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/fragment_impl_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/fragment_impl_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./item_type_cast.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./item_type_cast.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./ins_del.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./ins_del.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./composite3.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./composite3.hh
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./anisotropic.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./anisotropic.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/./aligned_column.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/./aligned_column.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./fixed_string.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./fixed_string.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/query_ast.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/query_ast.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/wireframe_widget.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/wireframe_widget.py
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/conop/src/./ring_finder.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/conop/./ring_finder.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./auto_correlate.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./auto_correlate.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/dispatch.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/dispatch.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./composite_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./composite_op.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/query_editor.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/query_editor.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./local_align.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./local_align.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/./aligned_column_iterator.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/./aligned_column_iterator.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/query_ast_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/query_ast_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./tri_matrix.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./tri_matrix.hh
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 0%] Built target ost_info_headers
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./clear.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./clear.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./composite2_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./composite2_op.hh
+make -f modules/io/src/CMakeFiles/ost_io_headers.dir/build.make modules/io/src/CMakeFiles/ost_io_headers.dir/depend
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./merge_pairwise_alignments.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./merge_pairwise_alignments.hh
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/DependInfo.cmake "--color="
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/gradient_editor_widget.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/gradient_editor_widget.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/pymod/aaindex2 /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/share/openstructure/aaindex/aaindex2
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/./hbond.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./hbond.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/share/icons/map_icon.png /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/share/openstructure/gui/icons/map_icon.png
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/./utils.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./utils.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/./table.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./table.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./def.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./def.hh
-[ 0%] Built target actions
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/io/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src/CMakeFiles/ost_io_headers.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/./invalid_sequence.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/./invalid_sequence.hh
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./composite3_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./composite3_op.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./boost_filesystem_helper.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./boost_filesystem_helper.hh
+[ 0%] Built target ost_conop_headers
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./clip_min_max.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./clip_min_max.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/query_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/query_impl.hh
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/./views_from_sequences.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/./views_from_sequences.hh
make -f modules/io/src/CMakeFiles/ost_io_headers.dir/build.make modules/io/src/CMakeFiles/ost_io_headers.dir/build
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/export_helper/pair_to_tuple_conv.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/export_helper/pair_to_tuple_conv.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/pymod/./xmlrunner.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/./xmlrunner.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/config/./config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./config.hh
-make -f modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/depend
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./info_error.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./info_error.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/atom_group.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/atom_group.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/conop/src/./processor.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/conop/./processor.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/db/src/./sqlite_conv.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/db/./sqlite_conv.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./module_config.hh
+[ 0%] Built target ost_gui_scene_pymod
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/chemdict_parser.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/chemdict_parser.hh
+make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/depend
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state_base.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./aligned_cuboid.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./aligned_cuboid.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./paged_array.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./paged_array.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./conjugate.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./conjugate.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/query_impl_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/query_impl_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/./profile_handle.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/./profile_handle.hh
+make -f modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/depend
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_base_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state_base_fw.hh
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./pair_subst_weight_matrix.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./pair_subst_weight_matrix.hh
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/gfx/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./auto_correlate.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./auto_correlate.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./clip_alignment.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./clip_alignment.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./vec_mat_predicates.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./vec_mat_predicates.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/star_parser.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/star_parser.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_def.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state_def.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./convolute.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./convolute.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./semiglobal_align.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./semiglobal_align.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/residue_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/residue_impl.hh
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 0%] Built target ost_base_headers
make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./svd_superpose.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./svd_superpose.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/dispatch.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/dispatch.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/gradient_info_handler.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/gradient_info_handler.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/impl/sequence_impl_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/impl/sequence_impl_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/pymod/aaindex3 /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/share/openstructure/aaindex/aaindex3
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/./lddt.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./lddt.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/share/icons/menubar_icon.png /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/share/openstructure/gui/icons/menubar_icon.png
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./exc.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./exc.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/export_helper/vec_to_list_conv.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/export_helper/vec_to_list_conv.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/./naccess.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./naccess.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/./gosty_startup.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./gosty_startup.py
-[ 0%] Built target ost_bindings_headers
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/config/./dllexport.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./dllexport.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/pymod/./testutils.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/./testutils.py
make -f modules/gui/src/CMakeFiles/ost_gui_headers.dir/build.make modules/gui/src/CMakeFiles/ost_gui_headers.dir/depend
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./info_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./info_impl.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/atom_prop.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/atom_prop.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/db/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/db/./module_config.hh
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./conservation.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./conservation.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/conop/src/./amino_acids.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/conop/./amino_acids.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./clear.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./clear.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/star_parser.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/star_parser.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/star_writer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/star_writer.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_factory.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state_factory.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./correlate.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./correlate.hh
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/gui/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/CMakeFiles/ost_gui_headers.dir/DependInfo.cmake "--color="
-make -f modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/map_iso_gen.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./quat.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./quat.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./sequence_identity.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./sequence_identity.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/residue_impl_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/residue_impl_fw.hh
+[ 0%] Built target ost_seq_headers
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./module_config.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/impl/sequence_list_impl_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/impl/sequence_list_impl_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/gradient_list_model.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/gradient_list_model.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/share/icons/rigid_body_manipulator_icon.png /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/share/openstructure/gui/icons/rigid_body_manipulator_icon.png
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/./qsscore.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./qsscore.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./geom.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./geom.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/test_utils/compare_files.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/test_utils/compare_files.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/./hhblits.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./hhblits.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different __init__.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/__init__.py
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/db/src/./linear_indexer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/db/./linear_indexer.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./info_impl_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./info_impl_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/conop/src/./diag.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/conop/./diag.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/atom_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/atom_impl.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./contact_prediction_score.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./contact_prediction_score.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/star_writer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/star_writer.hh
+make -f modules/config/CMakeFiles/ost_config.dir/build.make modules/config/CMakeFiles/ost_config.dir/depend
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/mmcif_reader.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/mmcif_reader.hh
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/config /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/config /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/config/CMakeFiles/ost_config.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/map_iso_gen_s.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen_s.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_frequency_domain.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state_frequency_domain.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./transform.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./transform.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/surface_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/surface_impl.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./cross_correlate.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./cross_correlate.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/mmcif_info.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/mmcif_info.hh
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./clip_min_max.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./clip_min_max.hh
make -f modules/gui/src/CMakeFiles/ost_gui_headers.dir/build.make modules/gui/src/CMakeFiles/ost_gui_headers.dir/build
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./sec_structure_segments.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./sec_structure_segments.hh
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_half_frequency_domain.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state_half_frequency_domain.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./sequence_similarity.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./sequence_similarity.hh
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/tool.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/tools/tool.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/map_iso_gen_s.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen_s.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/gradient_preset_widget.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/gradient_preset_widget.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/impl/sequence_list_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/impl/sequence_list_impl.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/config/./version.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./version.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./sec_structure_segments.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./sec_structure_segments.hh
-[ 0%] Built target ost_seq_alg_pymod
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./mat.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./mat.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/share/icons/selection_icon.png /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/share/openstructure/gui/icons/selection_icon.png
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/./scoring.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./scoring.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./generic_property.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./generic_property.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/./hhblits2.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./hhblits2.py
-[ 0%] Built target ost_gui_pymod
+make -f modules/config/CMakeFiles/ost_config.dir/build.make modules/config/CMakeFiles/ost_config.dir/build
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make[3]: Nothing to be done for 'modules/config/CMakeFiles/ost_config.dir/build'.
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/atom_impl_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/atom_impl_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./info_handle.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./info_handle.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/db/src/./binary_container.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/db/./binary_container.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/conop/src/./model_check.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/conop/./model_check.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/mmcif_reader.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/mmcif_reader.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./contact_weight_matrix.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./contact_weight_matrix.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./conjugate.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./conjugate.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./point_cloud.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./point_cloud.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/map_iso_gen_s.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen_s.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state_base.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/hsc_widget.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/hsc_widget.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/tool_option_group.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/tools/tool_option_group.hh
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/impl/sequence_list_iterator.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/impl/sequence_list_iterator.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/mmcif_writer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/mmcif_writer.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/surface_impl_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/surface_impl_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state_impl.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./density_slice.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./density_slice.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./dft.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./dft.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./local_dist_diff_test.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./local_dist_diff_test.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./mat2.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./mat2.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/share/icons/show_sidebar_icon.png /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/share/openstructure/gui/icons/show_sidebar_icon.png
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/./chain_mapping.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./chain_mapping.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/./hhblits3.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./hhblits3.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/conop/src/./heuristic.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/conop/./heuristic.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./integrity_error.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./integrity_error.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/chain_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/chain_impl.hh
-[ 0%] Built target ost_base_pymod
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./info_group.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./info_group.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/db/src/./extract_data_helper.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/db/./extract_data_helper.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/mmcif_info.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/mmcif_info.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./convolute.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./convolute.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./distance_map.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./distance_map.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/map_iso_spec.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/map_iso_spec.hh
-[ 0%] Built target ost_config_headers
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/tool_options.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/tools/tool_options.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_base_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state_base_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./mat3.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./mat3.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/immutable_gradient_info_handler.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/immutable_gradient_info_handler.py
-make -f modules/config/CMakeFiles/ost_config.dir/build.make modules/config/CMakeFiles/ost_config.dir/depend
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/./sequence_list.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/./sequence_list.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./distance_test_common.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./distance_test_common.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/share/icons/site_icon.png /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/share/openstructure/gui/icons/site_icon.png
-make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/config /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/config /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/config/CMakeFiles/ost_config.dir/DependInfo.cmake "--color="
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/./stereochemistry.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./stereochemistry.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/conop/src/./compound.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/conop/./compound.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./invalid_handle.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./invalid_handle.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/./blast.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./blast.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/chain_impl_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/chain_impl_fw.hh
+[ 0%] Built target ost_config
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./module_config.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/tool_option_group.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/tools/tool_option_group.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/torsion_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/torsion_impl.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./subst_weight_matrix.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./subst_weight_matrix.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/io_profile.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/io_profile.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./fft.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./fft.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_spatial_domain.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state_spatial_domain.hh
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./info_item.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./info_item.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./entropy.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./entropy.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/./sequence_handle.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/./sequence_handle.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./correlate.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./correlate.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/tool_bar.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/tools/tool_bar.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/mmcif_writer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/mmcif_writer.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./distance_test_common.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./distance_test_common.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./variance_map.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./variance_map.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/tool_options.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/tools/tool_options.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/map_octree.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/map_octree.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./mat4.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./mat4.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_def.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state_def.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/immutable_preset_info_handler.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/immutable_preset_info_handler.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/dcd_io.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/dcd_io.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/torsion_impl_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/torsion_impl_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./data/default_contact_weight_matrix.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./default_contact_weight_matrix.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./fftw_helper.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./fftw_helper.hh
+[ 0%] Built target ost_geom_headers
+make -f modules/geom/src/CMakeFiles/ost_geom.dir/build.make modules/geom/src/CMakeFiles/ost_geom.dir/depend
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./distance_rmsd_test.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./distance_rmsd_test.hh
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/./dockq.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./dockq.py
-make -f modules/config/CMakeFiles/ost_config.dir/build.make modules/config/CMakeFiles/ost_config.dir/build
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/share/icons/split_icon.png /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/share/openstructure/gui/icons/split_icon.png
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/tool_bar.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/tools/tool_bar.hh
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[3]: Nothing to be done for 'modules/config/CMakeFiles/ost_config.dir/build'.
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/./cadscore.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./cadscore.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/conop/src/./compound_lib.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/conop/./compound_lib.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./ptr_observer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./ptr_observer.hh
-[ 0%] Built target ost_db_headers
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/connector_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/connector_impl.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./global_align.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./global_align.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./info_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./info_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/geom/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src/CMakeFiles/ost_geom.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/octree_isocont.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/octree_isocont.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_crd_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/entity_io_crd_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./atom_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./atom_base.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_visitor.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state_visitor.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/selection_tool.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/tools/selection_tool.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/./alignment_handle.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/./alignment_handle.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/io_profile.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/io_profile.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./cross_correlate.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./cross_correlate.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./fill.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./fill.hh
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/geom/src/CMakeFiles/ost_geom.dir/build.make modules/geom/src/CMakeFiles/ost_geom.dir/build
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./data/default_pair_subst_weight_matrix.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./default_pair_subst_weight_matrix.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/cartoon_renderer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/cartoon_renderer.hh
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_pqr_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/entity_io_pqr_handler.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./superpose_frames.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./superpose_frames.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/octree_isocont.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/octree_isocont.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./vec.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./vec.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_factory.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state_factory.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/init_inspector.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/init_inspector.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/./kclust.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./kclust.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/share/icons/warning_icon.png /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/share/openstructure/gui/icons/warning_icon.png
-[ 0%] Built target ost_config
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/./contact_score.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./contact_score.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./log.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./log.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/conop/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/conop/./module_config.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/connector_impl_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/connector_impl_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./module_config.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./ins_del.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./ins_del.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./atom_handle.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./atom_handle.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_algorithm.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state_algorithm.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./hmm_pseudo_counts.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./hmm_pseudo_counts.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/measure_tool.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/tools/measure_tool.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/cartoon_renderer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/cartoon_renderer.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_frequency_domain.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state_frequency_domain.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/inspector_widget.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/inspector_widget.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/./module_config.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/share/icons/refresh.png /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/share/openstructure/gui/icons/refresh.png
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/dcd_io.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/dcd_io.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./vec2.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./vec2.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./density_slice.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./density_slice.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./filter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./filter.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./atom_view.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./atom_view.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./filter_clashes.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./filter_clashes.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/./ialign.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./ialign.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/./ligand_scoring.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./ligand_scoring.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./log_sink.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./log_sink.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./local_align.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./local_align.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/custom_renderer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/custom_renderer.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/dihedral.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/dihedral.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/conop/src/./rule_based.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/conop/./rule_based.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./info_path.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./info_path.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./dft.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./dft.hh
+[ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/mat3.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/tool_option.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/tools/tool_option.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./vec3.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./vec3.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_half_frequency_domain.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state_half_frequency_domain.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/map_level_widget.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/map_level_widget.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/./sequence_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/./sequence_op.hh
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_crd_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/entity_io_crd_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/mat3.cc.o -MF CMakeFiles/ost_geom.dir/mat3.cc.o.d -o CMakeFiles/ost_geom.dir/mat3.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/src/mat3.cc
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./bond_handle.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./bond_handle.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/custom_renderer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/custom_renderer.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_mae_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/entity_io_mae_handler.hh
+[ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/mat2.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/mat2.cc.o -MF CMakeFiles/ost_geom.dir/mat2.cc.o.d -o CMakeFiles/ost_geom.dir/mat2.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/src/mat2.cc
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_visitor_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state_visitor_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./bond_table.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./bond_table.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./construct_cbeta.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./construct_cbeta.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/./mmseqs2.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./mmseqs2.py
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/cpk_renderer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/cpk_renderer.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/entity_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/entity_impl.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/./ligand_scoring_base.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./ligand_scoring_base.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./profile.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./profile.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./merge_pairwise_alignments.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./merge_pairwise_alignments.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./info_set.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./info_set.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/conop/src/./minimal_compound_lib.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/conop/./minimal_compound_lib.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./vec4.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./vec4.hh
-[ 0%] Built target scene_icons
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./fft.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./fft.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_pqr_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/entity_io_pqr_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./hmm_score.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./hmm_score.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./fourier_filters.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./fourier_filters.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/index.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/index.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/tool_manager.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/tools/tool_manager.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state_impl.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/preset.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/preset.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/./aligned_region.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/./aligned_region.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/entity_impl_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/entity_impl_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./chain_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./chain_base.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/type_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/type_fw.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./clash_score.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./clash_score.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./module_config.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./wrap_parasail.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./wrap_parasail.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/debug_renderer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/debug_renderer.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./dyn_cast.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./dyn_cast.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/./dockq.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./dockq.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./info_visitor.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./info_visitor.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/./ligand_scoring_scrmsd.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./ligand_scoring_scrmsd.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./fftw_helper.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./fftw_helper.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/conop/src/./compound_lib_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/conop/./compound_lib_base.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/remote.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/remote.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_mae_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/entity_io_mae_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/./aligned_column.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/./aligned_column.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./vecmat_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./vecmat_op.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_spatial_domain.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state_spatial_domain.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/fragment_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/fragment_impl.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./gaussian_gradient_magnitude.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./gaussian_gradient_magnitude.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_mmcif_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/entity_io_mmcif_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./chain_handle.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./chain_handle.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./chain_view.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./chain_view.hh
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./trajectory_analysis.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./trajectory_analysis.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/tool_options_widget.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/tools/tool_options_widget.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/value_holder.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/value_holder.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/entity_io_handler.hh
+[ 1%] Built target ost_seq_alg_headers
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./chain_type.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./chain_type.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./gaussian.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./gaussian.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/simple_renderer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/simple_renderer.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./pair_subst_weight_matrix.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./pair_subst_weight_matrix.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/./ligand_scoring_lddtpli.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./ligand_scoring_lddtpli.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./fill.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./fill.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./stdint.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./stdint.hh
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./info_verbose_visitor.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./info_verbose_visitor.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/preset_editor_list_model.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/preset_editor_list_model.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/./aligned_column_iterator.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/./aligned_column_iterator.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/fragment_impl_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/fragment_impl_fw.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/manipulator.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/tools/manipulator.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/conop/src/./ring_finder.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/conop/./ring_finder.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./vecmat2_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./vecmat2_op.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_mmcif_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/entity_io_mmcif_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_visitor.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state_visitor.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./algorithm.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./algorithm.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/pdb_reader.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/pdb_reader.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./chem_class.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./chem_class.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./structure_analysis.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./structure_analysis.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./semiglobal_align.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./semiglobal_align.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./filter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./filter.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/sline_renderer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/sline_renderer.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/./bb_lddt.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./bb_lddt.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/preset_editor_widget.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/preset_editor_widget.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./item_type.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./item_type.hh
-[ 0%] Built target ost_bindings_pymod
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./stdint_msc.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./stdint_msc.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/./invalid_sequence.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/./invalid_sequence.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/query_ast.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/query_ast.hh
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./vecmat3_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./vecmat3_op.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_algorithm.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state_algorithm.hh
+[ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/mat4.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./circle_mask.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./circle_mask.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/mat4.cc.o -MF CMakeFiles/ost_geom.dir/mat4.cc.o.d -o CMakeFiles/ost_geom.dir/mat4.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/src/mat4.cc
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/tool_options_win.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/tools/tool_options_win.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/entity_io_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./chem_type.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./chem_type.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./consistency_checks.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./consistency_checks.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./geom_info_conversion.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./geom_info_conversion.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./fourier_filters.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./fourier_filters.hh
-[ 0%] Built target ost_conop_headers
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/stereo_data.json /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/share/openstructure/stereo_data.json
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./vecmat4_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./vecmat4_op.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./sequence_identity.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./sequence_identity.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/trace_renderer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/trace_renderer.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/preset_info_handler.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/preset_info_handler.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./range.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./range.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/query_ast_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/query_ast_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./gaussian_laplacian.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./gaussian_laplacian.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./coord_group.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./coord_group.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_pdb_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/entity_io_pdb_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/sline_renderer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/sline_renderer.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/mouse_event.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/./views_from_sequences.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/./views_from_sequences.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_visitor_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state_visitor_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./pdbize.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./pdbize.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/pdb_reader.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/pdb_reader.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./item_type_cast.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./item_type_cast.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./gaussian_gradient_magnitude.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./gaussian_gradient_magnitude.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./circular_iterator.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./circular_iterator.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/line_trace_renderer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/line_trace_renderer.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./module_config.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./composite_mask.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./composite_mask.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/trace_renderer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/trace_renderer.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./highest_peak_search_3d.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./highest_peak_search_3d.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/map_tool.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/tools/map_tool.hh
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/query_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/query_impl.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./sequence_similarity.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./sequence_similarity.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/preset_list_model.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/preset_list_model.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/./profile_handle.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/./profile_handle.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/index.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/index.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/pdb_writer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/pdb_writer.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./data_algorithm.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./data_algorithm.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/line_trace_renderer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/line_trace_renderer.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./coord_source.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./coord_source.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./histogram.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./histogram.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./pdbize.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./pdbize.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_sdf_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/entity_io_sdf_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/align_properties_painter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/align_properties_painter.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./adjacency_bitmap.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./adjacency_bitmap.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_pdb_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/entity_io_pdb_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./gaussian.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./gaussian.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./data_observer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./data_observer.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/backbone_trace.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/backbone_trace.hh
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./units.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./units.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/align_properties_painter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/align_properties_painter.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./constants.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./constants.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/query_impl_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/query_impl_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./subst_weight_matrix.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./subst_weight_matrix.hh
-[ 0%] Built target ost_mol_alg_pymod
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./consistency_checks.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./consistency_checks.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/pdb_writer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/pdb_writer.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/preset_widget.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/preset_widget.py
-[ 0%] Built target ost_info_headers
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./message.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./message.hh
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/entity_detail.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/entity_detail.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/type_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/type_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./gaussian_laplacian.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./gaussian_laplacian.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/base_row.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/base_row.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/residue_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/residue_impl.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./composite.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./composite.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./variance_map.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./variance_map.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./contact_overlap.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./contact_overlap.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_sdf_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/entity_io_sdf_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/render_mode_widget.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/render_mode_widget.py
-[ 0%] Built target ost_seq_headers
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./platform.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./platform.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/value_holder.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/value_holder.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./highest_peak_search_3d.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./highest_peak_search_3d.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./line_iterator.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./line_iterator.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./data_types.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./data_types.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./in_mem_coord_source.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./in_mem_coord_source.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/sdf_reader.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/sdf_reader.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/entity_detail.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/entity_detail.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./data.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./data.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./local_sigma_threshold.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./local_sigma_threshold.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/background_painter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/background_painter.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./composite2.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./composite2.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./data/default_contact_weight_matrix.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./default_contact_weight_matrix.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/sdf_writer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/sdf_writer.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/entity_renderer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./domain_find.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./domain_find.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/residue_impl_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/residue_impl_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/sdf_reader.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/sdf_reader.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/render_op.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/render_op.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./string_ref.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./string_ref.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./algorithm.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./algorithm.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./histogram.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./histogram.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./coord_frame.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./coord_frame.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/conservation_painter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/conservation_painter.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./composite3.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./composite3.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./data/default_pair_subst_weight_matrix.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./default_pair_subst_weight_matrix.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./consistency_checks.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./consistency_checks.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./mask_image.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./mask_image.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./debug.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./debug.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/save_entity.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/save_entity.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/trace_renderer_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/trace_renderer_base.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./similarity_matrix.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./similarity_matrix.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/surface_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/surface_impl.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/sdf_writer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/sdf_writer.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/render_options_widget.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/render_options_widget.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./pod_vector.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./pod_vector.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./circle_mask.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./circle_mask.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./line_iterator.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./line_iterator.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./editor_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./editor_base.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/painter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/painter.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./composite_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./composite_op.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/connect_renderer_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/connect_renderer_base.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./accessibility.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./accessibility.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/surface_impl_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/surface_impl_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./hmm_pseudo_counts.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./hmm_pseudo_counts.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./fixed_string.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./fixed_string.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/save_entity.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/save_entity.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/scene_observer_impl.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/scene_observer_impl.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./composite_mask.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./composite_mask.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./local_sigma_threshold.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./local_sigma_threshold.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./composite2_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./composite2_op.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/secstr_row.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/secstr_row.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/mapped_property.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/mapped_property.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./sec_struct.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./sec_struct.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/torsion_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/torsion_impl.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./tri_matrix.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./tri_matrix.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./hmm_score.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./hmm_score.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./negate.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./negate.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/load_entity.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/load_entity.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/scene_selection_helper.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/scene_selection_helper.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./data_algorithm.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./data_algorithm.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./mask_image.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./mask_image.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./composite3_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./composite3_op.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/seq_secstr_painter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_secstr_painter.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/entity_renderer_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/entity_renderer_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/torsion_impl_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/torsion_impl_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./nonstandard.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./nonstandard.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./boost_filesystem_helper.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./boost_filesystem_helper.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./editor_type_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./editor_type_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./contact_overlap.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./contact_overlap.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./normalizer_factory.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./normalizer_factory.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/surface_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/surface_io_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./wrap_parasail.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./wrap_parasail.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/simple_widget.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/simple_widget.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./data_observer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./data_observer.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./negate.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./negate.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/seq_selection_painter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_selection_painter.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./aligned_cuboid.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./aligned_cuboid.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/tabulated_trig.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/tabulated_trig.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./atom_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./atom_base.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./molck.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./molck.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./paged_array.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./paged_array.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./mol.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./mol.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/connect_renderer_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/connect_renderer_base.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./dllexport.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./dllexport.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/secstr_row.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/secstr_row.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./domain_find.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./domain_find.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/load_surface.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/load_surface.hh
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/sline_widget.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/sline_widget.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./normalizer_factory.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./normalizer_factory.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./data_types.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./data_types.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/seq_text_painter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_text_painter.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./vec_mat_predicates.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./vec_mat_predicates.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/fast_spheres.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/fast_spheres.hh
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./atom_handle.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./atom_handle.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./find_membrane.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./find_membrane.hh
-[ 0%] Built target ost_seq_alg_headers
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/surface_io_msms_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/surface_io_msms_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/toolbar_options_widget.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/toolbar_options_widget.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./norm.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./norm.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./data.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./data.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./quat.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./quat.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/sequence_delegate.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_delegate.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/render_options/render_options.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/render_options/render_options.hh
-[ 0%] Built target ost_base_headers
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./atom_view.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./atom_view.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./entity_to_density.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./entity_to_density.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./extent_iterator.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./extent_iterator.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./similarity_matrix.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./similarity_matrix.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/seq_secstr_painter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_secstr_painter.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/mapped_property.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/mapped_property.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./extent_mask.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./extent_mask.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/pdb_str.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/pdb_str.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/trace_widget.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/trace_widget.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./debug.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./debug.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./normalizer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./normalizer.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./transform.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./transform.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/sequence_model.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_model.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/render_options/line_render_options.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/render_options/line_render_options.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./biounit.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./biounit.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./bond_handle.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./bond_handle.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./norm.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./norm.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./extent.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./extent.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./accessibility.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./accessibility.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/seq_selection_painter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_selection_painter.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./entity_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./entity_base.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/sdf_str.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/sdf_str.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/tube_widget.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/tube_widget.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./point_cloud.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./point_cloud.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./dllexport.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./dllexport.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./norm_linear.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./norm_linear.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/sequence_row.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_row.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/render_options/custom_render_options.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/render_options/custom_render_options.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./gdt.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./gdt.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/entity_renderer_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/entity_renderer_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./normalizer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./normalizer.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./sec_struct.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./sec_struct.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/mmcif_str.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/mmcif_str.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./bond_table.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./bond_table.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/uniform_color_widget.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/uniform_color_widget.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./module_config.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./extent_iterator.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./extent_iterator.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/seq_text_painter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_text_painter.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/tabulated_trig.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/tabulated_trig.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./norm_linear.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./norm_linear.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./entity_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./entity_base.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./image_factory.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./image_factory.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/stereochemical_params_reader.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/stereochemical_params_reader.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/sequence_delegate.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_delegate.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./nonstandard.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./nonstandard.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/omf.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/omf.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/fast_spheres.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/fast_spheres.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./norm_log.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./norm_log.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./image_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./image_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./entity_handle.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./entity_handle.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/sequence_model.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_model.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./molck.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./molck.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/render_options/render_options.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/render_options/render_options.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./norm_od.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./norm_od.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/sequence_row.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_row.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./entity_observer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./entity_observer.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./image_handle_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./image_handle_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./find_membrane.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./find_membrane.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/load_map.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/load_map.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/render_options/line_render_options.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/render_options/line_render_options.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./power_spectrum.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./power_spectrum.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/sequence_search_bar.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_search_bar.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./image_handle.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./image_handle.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/render_options/custom_render_options.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/render_options/custom_render_options.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./entity_to_density.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./entity_to_density.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./entity_observer_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./entity_observer_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./randomize.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./randomize.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./image_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./image_impl.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/render_options/cpk_render_options.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/render_options/cpk_render_options.hh
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./chain_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./chain_base.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/stereochemical_params_reader.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/stereochemical_params_reader.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/visibility_op.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/visibility_op.py
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./extent_mask.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./extent_mask.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./norm_od.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./norm_od.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/sequence_table_view.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_table_view.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_df3_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_df3_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./biounit.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./biounit.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./entity_property_mapper.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./entity_property_mapper.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./smooth_mask_image.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./smooth_mask_image.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/render_options/simple_render_options.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/render_options/simple_render_options.hh
-[ 0%] Built target ost_mol_alg_headers
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/omf.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/omf.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./chain_handle.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./chain_handle.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/line_trace_widget.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/line_trace_widget.py
-[ 0%] Built target ost_geom_headers
-make -f modules/geom/src/CMakeFiles/ost_geom.dir/build.make modules/geom/src/CMakeFiles/ost_geom.dir/depend
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./extent.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./extent.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./power_spectrum.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./power_spectrum.hh
-make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/geom/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src/CMakeFiles/ost_geom.dir/DependInfo.cmake "--color="
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/sequence_viewer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_viewer.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/image_format.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/image_format.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/sequence_table_view.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_table_view.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./image_list.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./image_list.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_dx_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_dx_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./entity_view.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./entity_view.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./gdt.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./gdt.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./stat.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./stat.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./entity_visitor.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./entity_visitor.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/render_options/sline_render_options.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/render_options/sline_render_options.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./chain_view.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./chain_view.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/load_map.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/load_map.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/wireframe_widget.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/wireframe_widget.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./image_factory.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./image_factory.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./randomize.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./randomize.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/sequence_viewer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_viewer.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_spi_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_spi_handler.hh
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/geom/src/CMakeFiles/ost_geom.dir/build.make modules/geom/src/CMakeFiles/ost_geom.dir/build
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/tick_painter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/tick_painter.hh
-make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./stat_accumulator.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./stat_accumulator.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./entity_visitor_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./entity_visitor_fw.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/render_options/line_trace_render_options.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/render_options/line_trace_render_options.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_df3_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_df3_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./chain_type.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./chain_type.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/query_editor.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/query_editor.py
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./image_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./image_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./smooth_mask_image.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./smooth_mask_image.hh
-[ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/mat4.cc.o
-[ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/mat2.cc.o
-[ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vecmat2_op.cc.o
-[ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vec3.cc.o
-[ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/mat3.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/mat4.cc.o -MF CMakeFiles/ost_geom.dir/mat4.cc.o.d -o CMakeFiles/ost_geom.dir/mat4.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/src/mat4.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/title_row.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/title_row.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/mat2.cc.o -MF CMakeFiles/ost_geom.dir/mat2.cc.o.d -o CMakeFiles/ost_geom.dir/mat2.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/src/mat2.cc
-[ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vecmat3_op.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/mat3.cc.o -MF CMakeFiles/ost_geom.dir/mat3.cc.o.d -o CMakeFiles/ost_geom.dir/mat3.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/src/mat3.cc
-[ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vecmat4_op.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./stat_min_max.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./stat_min_max.hh
+[ 1%] Built target ost_mol_alg_headers
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./image_state_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./image_state_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/tick_painter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/tick_painter.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./handle_type_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./handle_type_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./threshold.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./threshold.hh
+[ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vec3.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./image_state.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./image_state.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/vec3.cc.o -MF CMakeFiles/ost_geom.dir/vec3.cc.o.d -o CMakeFiles/ost_geom.dir/vec3.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/src/vec3.cc
-[ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite2.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/vecmat2_op.cc.o -MF CMakeFiles/ost_geom.dir/vecmat2_op.cc.o.d -o CMakeFiles/ost_geom.dir/vecmat2_op.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/src/vecmat2_op.cc
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_situs_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_situs_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./transcendentals.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./transcendentals.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/title_row.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/title_row.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./ics_editor.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./ics_editor.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/render_options/cartoon_render_options.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/render_options/cartoon_render_options.hh
-[ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite3.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/vecmat3_op.cc.o -MF CMakeFiles/ost_geom.dir/vecmat3_op.cc.o.d -o CMakeFiles/ost_geom.dir/vecmat3_op.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/src/vecmat3_op.cc
-[ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/point_cloud.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/vecmat4_op.cc.o -MF CMakeFiles/ost_geom.dir/vecmat4_op.cc.o.d -o CMakeFiles/ost_geom.dir/vecmat4_op.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/src/vecmat4_op.cc
-[ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite3_op.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/composite2.cc.o -MF CMakeFiles/ost_geom.dir/composite2.cc.o.d -o CMakeFiles/ost_geom.dir/composite2.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/src/composite2.cc
-[ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite2_op.cc.o
-[ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/quat.cc.o
-[ 2%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/transform.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/composite3.cc.o -MF CMakeFiles/ost_geom.dir/composite3.cc.o.d -o CMakeFiles/ost_geom.dir/composite3.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/src/composite3.cc
-[ 2%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/composite2_op.cc.o -MF CMakeFiles/ost_geom.dir/composite2_op.cc.o.d -o CMakeFiles/ost_geom.dir/composite2_op.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/src/composite2_op.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/quat.cc.o -MF CMakeFiles/ost_geom.dir/quat.cc.o.d -o CMakeFiles/ost_geom.dir/quat.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/src/quat.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/transform.cc.o -MF CMakeFiles/ost_geom.dir/transform.cc.o.d -o CMakeFiles/ost_geom.dir/transform.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/src/transform.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/point_cloud.cc.o -MF CMakeFiles/ost_geom.dir/point_cloud.cc.o.d -o CMakeFiles/ost_geom.dir/point_cloud.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/src/point_cloud.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/composite3_op.cc.o -MF CMakeFiles/ost_geom.dir/composite3_op.cc.o.d -o CMakeFiles/ost_geom.dir/composite3_op.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/src/composite3_op.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o -MF CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o.d -o CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/src/aligned_cuboid.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./chem_class.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./chem_class.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/image_format.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/image_format.hh
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./image_handle_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./image_handle_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./stat.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./stat.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./image.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./image.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./not_connected_error.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./not_connected_error.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./transform.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./transform.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/alignment_view_object.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/alignment_view_object.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/render_options/trace_render_options.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/render_options/trace_render_options.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color_ops/color_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/color_ops/color_op.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./inverted_mask.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./inverted_mask.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./transform_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./transform_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./property_id.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./property_id.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/base_view_object.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/base_view_object.hh
-[ 2%] Built target ost_gui_scene_pymod
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_dx_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_dx_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./chem_type.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./chem_type.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color_ops/by_element_color_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/color_ops/by_element_color_op.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_mrc_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_mrc_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./map.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./map.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./alg_transform.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./alg_transform.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./mask_base_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./mask_base_fw.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/sequence_view_object.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_view_object.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./image_handle.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./image_handle.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./stat_accumulator.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./stat_accumulator.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_spi_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_spi_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color_ops/by_chain_color_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/color_ops/by_chain_color_op.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./coord_group.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./coord_group.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./query.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./query.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color_ops/color_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/color_ops/color_op.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./mask_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./mask_base.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_dat_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_dat_handler.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/main_thread_runner.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/main_thread_runner.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./image_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./image_impl.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./stat_min_max.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./stat_min_max.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color_ops/uniform_color_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/color_ops/uniform_color_op.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./coord_source.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./coord_source.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_situs_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_situs_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_ipl_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_ipl_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./query_error.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./query_error.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color_ops/by_element_color_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/color_ops/by_element_color_op.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/output_redirector.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./image_list.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./image_list.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./threshold.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./threshold.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color_ops/gradient_color_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/color_ops/gradient_color_op.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./in_mem_coord_source.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./in_mem_coord_source.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./transcendentals.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./transcendentals.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color_ops/entity_view_color_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/color_ops/entity_view_color_op.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./coord_frame.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./coord_frame.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./alg_mirror.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./alg_mirror.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_jpk_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_jpk_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color_ops/by_chain_color_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/color_ops/by_chain_color_op.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./mask_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./mask_op.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/completer_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/completer_base.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_mrc_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_mrc_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./image_state_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./image_state_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./transform.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./transform.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./editor_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./editor_base.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./query_state.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./query_state.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./alg_shift.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./alg_shift.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/dir_model.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/dir_model.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_dat_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_dat_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./image_state.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./image_state.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color_ops/basic_gradient_color_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/color_ops/basic_gradient_color_op.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./transform_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./transform_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_ipl_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_ipl_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./mask_visitor.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./mask_visitor.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./residue_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./residue_base.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./discrete_shrink.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./discrete_shrink.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_nanoscope_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_nanoscope_handler.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/gutter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/gutter.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./editor_type_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./editor_type_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./image.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./image.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color_ops/gradient_level_color_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/color_ops/gradient_level_color_op.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color_ops/uniform_color_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/color_ops/uniform_color_op.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./transformation_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./transformation_base.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color_ops/gradient_color_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/color_ops/gradient_color_op.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/path_completer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/path_completer.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./alg_transform.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./alg_transform.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_jpk_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_jpk_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./mol.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./mol.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./inverted_mask.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./inverted_mask.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color_ops/map_handle_color_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/color_ops/map_handle_color_op.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./alg_mirror.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./alg_mirror.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./mask.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./mask.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./residue_handle.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./residue_handle.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./transformations.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./transformations.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color_ops/entity_view_color_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/color_ops/entity_view_color_op.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_png_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_png_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./residue_prop.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./residue_prop.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./fractional_shift.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./fractional_shift.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/python_context_parser.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/python_context_parser.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./entity_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./entity_base.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_nanoscope_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_nanoscope_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./map.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./map.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./render_pass.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./render_pass.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color_ops/basic_gradient_color_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/color_ops/basic_gradient_color_op.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./module_config.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_dm3_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_dm3_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./module_config.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color_ops/gradient_level_color_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/color_ops/gradient_level_color_op.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./residue_view.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./residue_view.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/python_completer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/python_completer.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./entity_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./entity_base.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./alg_shift.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./alg_shift.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./mask_base_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./mask_base_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_png_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_png_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./bitmap_io.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./bitmap_io.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./entity_handle.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./entity_handle.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color_ops/map_handle_color_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/color_ops/map_handle_color_op.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./normalizer_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./normalizer_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./sec_structure.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./sec_structure.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/python_shell.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/python_shell.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./discrete_shrink.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./discrete_shrink.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./mask_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./mask_base.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_dm3_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_dm3_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./collada_exporter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./collada_exporter.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./entity_observer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./entity_observer.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./polar.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./polar.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./spatial_organizer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./spatial_organizer.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/python_shell_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/python_shell_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./transformation_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./transformation_base.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./mask_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./mask_op.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./line_average.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./line_average.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_tiff_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_tiff_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./color.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./color.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./normalizer_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./normalizer_impl.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./surface.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./surface.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/tiff_util.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/tiff_util.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./entity_observer_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./entity_observer_fw.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/python_shell_widget.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/python_shell_widget.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./transformations.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./transformations.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./mask_visitor.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./mask_visitor.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./rscrosscorr.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./rscrosscorr.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./null_data.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./null_data.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./surface_builder.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./surface_builder.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/jpk_util.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/jpk_util.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./entity.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./entity.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./entity_property_mapper.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./entity_property_mapper.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./observable.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./observable.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./render_pass.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./render_pass.hh
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/python_tokenizer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/python_tokenizer.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./fractional_shift.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./fractional_shift.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./paste_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./paste_impl.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/sequence_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/seq/sequence_io_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./mask.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./mask.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./entity_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./entity_fw.hh
+[ 1%] Built target ost_img_alg_headers
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./bitmap_io.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./bitmap_io.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./builder.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./builder.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/python_syntax_highlighter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/python_syntax_highlighter.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./entity_view.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./entity_view.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./module_config.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/fasta_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/seq/fasta_io_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./module_config.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./entity_visitor.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./entity_visitor.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gl_helper.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gl_helper.hh
+[ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vecmat2_op.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./peak.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./peak.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/vecmat2_op.cc.o -MF CMakeFiles/ost_geom.dir/vecmat2_op.cc.o.d -o CMakeFiles/ost_geom.dir/vecmat2_op.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/src/vecmat2_op.cc
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./collada_exporter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./collada_exporter.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/text_logger.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./polar.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./polar.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/pir_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/seq/pir_io_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/fasta_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/seq/fasta_io_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./surface_handle.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./surface_handle.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./color.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./color.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./phase.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./phase.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/python_interpreter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./entity_visitor_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./entity_visitor_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gfx.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gfx.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./normalizer_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./normalizer_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./line_average.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./line_average.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/promod_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/seq/promod_io_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./handle_type_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./handle_type_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gfx_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gfx_fw.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/python_interpreter_worker.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./normalizer_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./normalizer_impl.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./rscrosscorr.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./rscrosscorr.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gfx_node.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gfx_node.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/profile_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/seq/profile_io_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./ics_editor.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./ics_editor.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/pir_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/seq/pir_io_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./entity.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./entity.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./physical_units.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./physical_units.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./entity_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./entity_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./surface_prop.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./surface_prop.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/python_shell_text_document_layout.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/python_shell_text_document_layout.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./null_data.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./null_data.hh
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/hhm_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/seq/hhm_io_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gfx_node_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gfx_node_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./not_connected_error.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./not_connected_error.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/promod_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/seq/promod_io_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./pixel_sampling.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./pixel_sampling.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gl_helper.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gl_helper.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./torsion_handle.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./torsion_handle.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/shell_history.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/shell_history.hh
-[ 2%] Built target ost_img_alg_headers
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./observable.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./observable.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./property_id.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./property_id.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gfx_node_visitor.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gfx_node_visitor.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/pssm_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/seq/pssm_io_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./transfer_connectivity.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./transfer_connectivity.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/profile_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/seq/profile_io_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gfx.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gfx.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./point_list.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./point_list.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gfx_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gfx_fw.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/state_machine.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/state_machine.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./paste_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./paste_impl.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./query.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./query.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/clustal_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/seq/clustal_io_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gfx_object_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gfx_object_base.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/hhm_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/seq/hhm_io_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./query_view_wrapper.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./query_view_wrapper.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gfx_node.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gfx_node.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/state.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/state.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./peak.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./peak.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./query_error.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./query_error.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/load.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/seq/load.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/pssm_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/seq/pssm_io_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./point.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./point.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./view_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./view_op.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/transition.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/transition.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/clustal_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/seq/clustal_io_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gfx_node_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gfx_node_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./view_type_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./view_type_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./polygon_mask.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./polygon_mask.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/transition_guard.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/transition_guard.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/load.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/seq/load.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gfx_node_visitor.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gfx_node_visitor.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gfx_object_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gfx_object_base.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./view_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./view_op.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/button_bar.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/panels/button_bar.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./progress.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./progress.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./xcs_editor.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./xcs_editor.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gfx_object.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gfx_object.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./phase.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./phase.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./query_state.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./query_state.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/save.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/seq/save.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/transition_guard.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/transition_guard.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gfx_object_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gfx_object_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./physical_units.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./physical_units.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./residue_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./residue_base.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/button_bar.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/panels/button_bar.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./size.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./size.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./bounding_box.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./bounding_box.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./binary_data_sink.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./binary_data_sink.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gfx_prim.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gfx_prim.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./residue_handle.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./residue_handle.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./symmetry_node.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./symmetry_node.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./pixel_sampling.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./pixel_sampling.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./residue_prop.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./residue_prop.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./io_manager.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./io_manager.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./spherical_mask.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./spherical_mask.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./transform.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./transform.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./util.cc /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./util.cc
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/drop_box.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/panels/drop_box.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./point_list.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./point_list.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gfx_test_object.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gfx_test_object.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./residue_view.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./residue_view.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./point.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./point.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./io_manager.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./io_manager.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./symmetry_node.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./symmetry_node.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./module_config.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./binary_data_source.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./binary_data_source.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/panel_bar.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/panels/panel_bar.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./sec_structure.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./sec_structure.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./glwin_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./glwin_base.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./util.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./util.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./module_config.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./polygon_mask.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./polygon_mask.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/panel_manager.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/panels/panel_manager.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./spatial_organizer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./spatial_organizer.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./input.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./input.hh
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./container_serialization.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./container_serialization.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./progress.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./progress.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./surface.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./surface.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./prim_list.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./prim_list.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/bottom_bar.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/panels/bottom_bar.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gfx_test_object.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gfx_test_object.hh
+[ 1%] Built target ost_mol_headers
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./value_util.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./value_util.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./swap_util.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./swap_util.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./surface_builder.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./surface_builder.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./size.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./size.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./scene.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./scene.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/button_box.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/panels/button_box.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./builder.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./builder.hh
+[ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vecmat3_op.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/vecmat3_op.cc.o -MF CMakeFiles/ost_geom.dir/vecmat3_op.cc.o.d -o CMakeFiles/ost_geom.dir/vecmat3_op.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/src/vecmat3_op.cc
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/panel_manager.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/panels/panel_manager.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./io_utils.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./io_utils.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./spherical_mask.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./spherical_mask.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/event_button.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/panels/event_button.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./selection.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./selection.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./util.cc /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./util.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/panel_widget_container.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/panels/panel_widget_container.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./surface_handle.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./surface_handle.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/bottom_bar.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/panels/bottom_bar.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./glwin_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./glwin_base.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./io_exception.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./io_exception.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./surface.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./surface.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./util.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./util.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/button_box.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/panels/button_box.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./vecmat.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./vecmat.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./input.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./input.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./convert.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./convert.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/panel_bar_widget_holder.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/panels/panel_bar_widget_holder.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./surface_prop.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./surface_prop.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/event_button.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/panels/event_button.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./mask_info_convert.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./mask_info_convert.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/panel_widget_container.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/panels/panel_widget_container.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./converting_streams.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./converting_streams.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./value_util.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./value_util.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./texture.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./texture.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./torsion_handle.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./torsion_handle.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/side_bar.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/panels/side_bar.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./vecmat.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./vecmat.hh
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./formatted_line.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./formatted_line.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./mask_info_convert.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./mask_info_convert.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./vertex_array.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./vertex_array.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./transfer_connectivity.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./transfer_connectivity.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/panel_bar_widget_holder.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/panels/panel_bar_widget_holder.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./prim_list.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./prim_list.hh
+[ 1%] Built target ost_img_headers
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/chemdict_parser.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./chemdict_parser.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/splitter_panel_bar.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/panels/splitter_panel_bar.hh
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./vertex_array_helper.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./vertex_array_helper.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./scene.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./scene.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/star_parser.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./star_parser.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/tabbed_panel_bar.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/panels/tabbed_panel_bar.hh
-[ 2%] Built target ost_img_headers
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./scene_observer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./scene_observer.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./query_view_wrapper.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./query_view_wrapper.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/side_bar.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/panels/side_bar.hh
+[ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vecmat4_op.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/vecmat4_op.cc.o -MF CMakeFiles/ost_geom.dir/vecmat4_op.cc.o.d -o CMakeFiles/ost_geom.dir/vecmat4_op.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/src/vecmat4_op.cc
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/splitter_panel_bar.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/panels/splitter_panel_bar.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./selection.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./selection.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/star_writer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./star_writer.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gl_include.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gl_include.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/tabbed_panel_bar.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/panels/tabbed_panel_bar.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./surface.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./surface.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./texture.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./texture.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/mmcif_reader.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./mmcif_reader.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/context_menu.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/scene_win/context_menu.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/mmcif_info.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./mmcif_info.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/current_selection_node.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/scene_win/current_selection_node.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./view_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./view_op.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./glext_include.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./glext_include.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/mmcif_reader.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./mmcif_reader.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./vertex_array.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./vertex_array.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/custom_part_node.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/scene_win/custom_part_node.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./view_type_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./view_type_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./render_mode.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./render_mode.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/mmcif_info.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./mmcif_info.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/mmcif_writer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./mmcif_writer.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./view_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./view_op.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/entity_node.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/scene_win/entity_node.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./material.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./material.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gradient.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gradient.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/io_profile.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./io_profile.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./xcs_editor.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./xcs_editor.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./vertex_array_helper.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./vertex_array_helper.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/mmcif_writer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./mmcif_writer.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/entity_part_node.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/scene_win/entity_part_node.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gradient_manager.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gradient_manager.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/dcd_io.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./dcd_io.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./bounding_box.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./bounding_box.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./module_config.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./scene_observer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./scene_observer.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/gfx_scene_node.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/scene_win/gfx_scene_node.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/entity_io_crd_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./entity_io_crd_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./transform.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./transform.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./primitives.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./primitives.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gl_include.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gl_include.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/label_node.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/scene_win/label_node.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./module_config.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/entity_io_pqr_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./entity_io_pqr_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/io_profile.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./io_profile.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/root_node.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/scene_win/root_node.hh
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./povray_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./povray_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./glext_include.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./glext_include.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/dcd_io.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./dcd_io.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/render_mode_node.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/scene_win/render_mode_node.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/entity_io_crd_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./entity_io_crd_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./render_mode.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./render_mode.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/render_modes_node.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/scene_win/render_modes_node.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/entity_io_pqr_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./entity_io_pqr_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/scene_node.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/scene_win/scene_node.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./material.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./material.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gradient.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gradient.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gradient_manager.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gradient_manager.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./module_config.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/entity_io_mae_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./entity_io_mae_handler.hh
-[ 2%] Built target ost_mol_headers
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./povray.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./povray.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/scene_win.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/scene_win/scene_win.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/entity_io_mmcif_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./entity_io_mmcif_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/render_mode_node.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/scene_win/render_mode_node.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./primitives.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./primitives.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/entity_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./entity_io_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./exporter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./exporter.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/render_modes_node.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/scene_win/render_modes_node.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./povray_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./povray_fw.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/pdb_reader.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./pdb_reader.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./exporter_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./exporter_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/scene_node.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/scene_win/scene_node.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./povray.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./povray.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/entity_io_pdb_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./entity_io_pdb_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gost_exporter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gost_exporter.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/pdb_writer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./pdb_writer.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/scene_win.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/scene_win/scene_win.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./color_ops/map_handle_color_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./map_handle_color_op.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./exporter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./exporter.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./exporter_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./exporter_fw.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/entity_io_sdf_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./entity_io_sdf_handler.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/scene_win_model.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/scene_win/scene_win_model.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./map_iso.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./map_iso.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/sdf_reader.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./sdf_reader.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./map_slab.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./map_slab.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gost_exporter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gost_exporter.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/messages/message_widget.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/messages/message_widget.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/sdf_writer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./sdf_writer.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./map_iso_prop.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./map_iso_prop.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./color_ops/map_handle_color_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./map_handle_color_op.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/messages/message_box_widget.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/messages/message_box_widget.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/save_entity.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./save_entity.hh
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 2%] Built target ost_gfx_headers
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/sdf_reader.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./sdf_reader.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./map_iso.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./map_iso.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/sdf_writer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./sdf_writer.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/messages/log_reader.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/messages/log_reader.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/load_entity.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./load_entity.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/save_entity.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./save_entity.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/argand.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/argand.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/surface_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./surface_io_handler.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/data_viewer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/load_surface.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./load_surface.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/surface_io_msms_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./surface_io_msms_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/load_entity.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./load_entity.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./map_slab.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./map_slab.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/surface_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./surface_io_handler.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/data_viewer_panel.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer_panel.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/pdb_str.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./pdb_str.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./map_iso_prop.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./map_iso_prop.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/load_surface.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./load_surface.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/data_viewer_panel_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer_panel_base.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/sdf_str.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./sdf_str.hh
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/surface_io_msms_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./surface_io_msms_handler.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/draw_overlay.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/draw_overlay.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/mmcif_str.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./mmcif_str.hh
+[ 1%] Built target ost_gfx_headers
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/drawing_functions.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/drawing_functions.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/stereochemical_params_reader.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./stereochemical_params_reader.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/pdb_str.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./pdb_str.hh
+[ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite2.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/composite2.cc.o -MF CMakeFiles/ost_geom.dir/composite2.cc.o.d -o CMakeFiles/ost_geom.dir/composite2.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/src/composite2.cc
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/fft_panel.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/fft_panel.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/omf.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./omf.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/sdf_str.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./sdf_str.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/mmcif_str.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./mmcif_str.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/info_panel.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/info_panel.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/stereochemical_params_reader.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./stereochemical_params_reader.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/img2qt.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/img2qt.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/mask_overlay.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/mask_overlay.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/omf.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./omf.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/null_overlay.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/null_overlay.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./seq/sequence_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./sequence_io_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/overlay.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/overlay.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./seq/fasta_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./fasta_io_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/mask_overlay.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/mask_overlay.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./seq/pir_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./pir_io_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/null_overlay.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/null_overlay.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/overlay_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/overlay_base.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/overlay_base_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/overlay_base_fw.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./seq/promod_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./promod_io_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/overlay.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/overlay.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./seq/profile_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./profile_io_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/overlay_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/overlay_base.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/overlay_manager.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./seq/hhm_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./hhm_io_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/overlay_base_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/overlay_base_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/overlay_manager_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_fw.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./seq/pssm_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./pssm_io_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/overlay_manager.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./seq/clustal_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./clustal_io_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/overlay_manager_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_fw.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./seq/load.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./load.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/overlay_manager_gui.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_gui.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./seq/save.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./save.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/overlay_manager_observer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_observer.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/overlay_manager_gui.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_gui.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./img/load_map.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./load_map.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/pointlist_overlay.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/pointlist_overlay.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./img/map_io_df3_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./map_io_df3_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/pointlist_overlay_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/pointlist_overlay_base.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/overlay_manager_observer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_observer.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/pointlist_overlay.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/pointlist_overlay.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./img/image_format.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./image_format.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/strategies.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/strategies.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/pointlist_overlay_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/pointlist_overlay_base.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./img/map_io_dx_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./map_io_dx_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/strategies_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/strategies_fw.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./img/map_io_spi_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./map_io_spi_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/viewer_normalizer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/viewer_normalizer.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/strategies.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/strategies.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./img/map_io_situs_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./map_io_situs_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./file_browser.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./file_browser.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/strategies_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/strategies_fw.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./img/map_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./map_io_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./file_type_dialog.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./file_type_dialog.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/viewer_normalizer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/viewer_normalizer.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./file_browser.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./file_browser.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./img/map_io_mrc_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./map_io_mrc_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./file_viewer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./file_viewer.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./img/map_io_dat_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./map_io_dat_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./gl_canvas.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./gl_canvas.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./file_type_dialog.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./file_type_dialog.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./img/map_io_ipl_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./map_io_ipl_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./gl_win.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./gl_win.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./img/map_io_jpk_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./map_io_jpk_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./scene_menu.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./scene_menu.hh
+[ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite3.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./file_viewer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./file_viewer.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./img/map_io_nanoscope_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./map_io_nanoscope_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./gosty_app.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./gosty_app.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/composite3.cc.o -MF CMakeFiles/ost_geom.dir/composite3.cc.o.d -o CMakeFiles/ost_geom.dir/composite3.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/src/composite3.cc
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./gl_canvas.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./gl_canvas.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./img/map_io_png_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./map_io_png_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./admin.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./admin.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./gl_win.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./gl_win.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./img/map_io_dm3_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./map_io_dm3_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./module_config.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./scene_menu.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./scene_menu.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./img/map_io_tiff_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./map_io_tiff_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./main.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./main.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./gosty_app.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./gosty_app.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./admin.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./admin.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./img/tiff_util.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./tiff_util.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./main_area.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./main_area.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./module_config.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./img/jpk_util.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./jpk_util.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./perspective.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./perspective.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./main.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./main.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./main_area.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./main_area.hh
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./perspective.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./perspective.hh
+[ 1%] Built target ost_io_headers
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./scene_selection.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./scene_selection.hh
-[ 2%] Built target ost_io_headers
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./main_window.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./main_window.hh
+[ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite2_op.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/composite2_op.cc.o -MF CMakeFiles/ost_geom.dir/composite2_op.cc.o.d -o CMakeFiles/ost_geom.dir/composite2_op.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/src/composite2_op.cc
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./dock_widget.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./dock_widget.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./dock_widget.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./dock_widget.hh
+[ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite3_op.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/composite3_op.cc.o -MF CMakeFiles/ost_geom.dir/composite3_op.cc.o.d -o CMakeFiles/ost_geom.dir/composite3_op.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/src/composite3_op.cc
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./thin_splitter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./thin_splitter.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./widget.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./widget.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./widget_geom_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./widget_geom_handler.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./widget_pool.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./widget_pool.hh
+[ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/quat.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/quat.cc.o -MF CMakeFiles/ost_geom.dir/quat.cc.o.d -o CMakeFiles/ost_geom.dir/quat.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/src/quat.cc
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./widget_registry.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./widget_registry.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./widget_state_saver.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./widget_state_saver.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./file_loader.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./file_loader.hh
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 2%] Built target ost_gui_headers
+[ 1%] Built target ost_gui_headers
+[ 2%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/transform.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/transform.cc.o -MF CMakeFiles/ost_geom.dir/transform.cc.o.d -o CMakeFiles/ost_geom.dir/transform.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/src/transform.cc
+[ 2%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o -MF CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o.d -o CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/src/aligned_cuboid.cc
+[ 2%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/point_cloud.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/point_cloud.cc.o -MF CMakeFiles/ost_geom.dir/point_cloud.cc.o.d -o CMakeFiles/ost_geom.dir/point_cloud.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/src/point_cloud.cc
[ 2%] Linking CXX shared library ../../../stage/lib/libost_geom.so
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_geom.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/ost_geom.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_geom.so.2.9 -o ../../../stage/lib/libost_geom.so.2.9.2 CMakeFiles/ost_geom.dir/mat2.cc.o CMakeFiles/ost_geom.dir/mat3.cc.o CMakeFiles/ost_geom.dir/mat4.cc.o CMakeFiles/ost_geom.dir/vec3.cc.o CMakeFiles/ost_geom.dir/vecmat2_op.cc.o CMakeFiles/ost_geom.dir/vecmat3_op.cc.o CMakeFiles/ost_geom.dir/vecmat4_op.cc.o CMakeFiles/ost_geom.dir/composite2.cc.o CMakeFiles/ost_geom.dir/composite3.cc.o CMakeFiles/ost_geom.dir/composite2_op.cc.o CMakeFiles/ost_geom.dir/composite3_op.cc.o CMakeFiles/ost_geom.dir/quat.cc.o CMakeFiles/ost_geom.dir/transform.cc.o CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o CMakeFiles/ost_geom.dir/point_cloud.cc.o -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib: /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0
@@ -17791,91 +17827,91 @@
make -f modules/base/src/CMakeFiles/ost_base.dir/build.make modules/base/src/CMakeFiles/ost_base.dir/depend
make -f modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make modules/geom/pymod/CMakeFiles/_ost_geom.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src/CMakeFiles/ost_base.dir/DependInfo.cmake "--color="
-make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/geom/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/pymod/CMakeFiles/_ost_geom.dir/DependInfo.cmake "--color="
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src/CMakeFiles/ost_base.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make modules/geom/pymod/CMakeFiles/_ost_geom.dir/build
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make -f modules/base/src/CMakeFiles/ost_base.dir/build.make modules/base/src/CMakeFiles/ost_base.dir/build
-make -f modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make modules/geom/pymod/CMakeFiles/_ost_geom.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 2%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/log.cc.o
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-[ 2%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/generic_property.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/log.cc.o -MF CMakeFiles/ost_base.dir/log.cc.o.d -o CMakeFiles/ost_base.dir/log.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/base/src/log.cc
-[ 2%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/profile.cc.o
[ 3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec2.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/log_sink.cc.o -MF CMakeFiles/ost_base.dir/log_sink.cc.o.d -o CMakeFiles/ost_base.dir/log_sink.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/base/src/log_sink.cc
-[ 3%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/message.cc.o
-[ 5%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/platform.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/generic_property.cc.o -MF CMakeFiles/ost_base.dir/generic_property.cc.o.d -o CMakeFiles/ost_base.dir/generic_property.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/base/src/generic_property.cc
-[ 5%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/test_utils/compare_files.cc.o
-[ 5%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/units.cc.o
-[ 5%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/string_ref.cc.o
+[ 3%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/generic_property.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec2.cc.o -MF CMakeFiles/_ost_geom.dir/export_vec2.cc.o.d -o CMakeFiles/_ost_geom.dir/export_vec2.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/pymod/export_vec2.cc
+[ 3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec3.cc.o
+[ 3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat3_op.cc.o
+[ 3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec4.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec3.cc.o -MF CMakeFiles/_ost_geom.dir/export_vec3.cc.o.d -o CMakeFiles/_ost_geom.dir/export_vec3.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/pymod/export_vec3.cc
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+[ 3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat2_op.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat3_op.cc.o -MF CMakeFiles/_ost_geom.dir/export_vecmat3_op.cc.o.d -o CMakeFiles/_ost_geom.dir/export_vecmat3_op.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/pymod/export_vecmat3_op.cc
+[ 3%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/log.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec4.cc.o -MF CMakeFiles/_ost_geom.dir/export_vec4.cc.o.d -o CMakeFiles/_ost_geom.dir/export_vec4.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/pymod/export_vec4.cc
+[ 3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat4_op.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/log.cc.o -MF CMakeFiles/ost_base.dir/log.cc.o.d -o CMakeFiles/ost_base.dir/log.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/base/src/log.cc
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+[ 3%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/log_sink.cc.o
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+[ 3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/wrap_geom.cc.o
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+[ 3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_mat2.cc.o
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+[ 3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_mat3.cc.o
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cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/profile.cc.o -MF CMakeFiles/ost_base.dir/profile.cc.o.d -o CMakeFiles/ost_base.dir/profile.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/base/src/profile.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/platform.cc.o -MF CMakeFiles/ost_base.dir/platform.cc.o.d -o CMakeFiles/ost_base.dir/platform.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/base/src/platform.cc
+[ 5%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/units.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/units.cc.o -MF CMakeFiles/ost_base.dir/units.cc.o.d -o CMakeFiles/ost_base.dir/units.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/base/src/units.cc
-[ 5%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat2_op.cc.o
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cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/string_ref.cc.o -MF CMakeFiles/ost_base.dir/string_ref.cc.o.d -o CMakeFiles/ost_base.dir/string_ref.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/base/src/string_ref.cc
-[ 5%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec3.cc.o
+[ 5%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/platform.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/platform.cc.o -MF CMakeFiles/ost_base.dir/platform.cc.o.d -o CMakeFiles/ost_base.dir/platform.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/base/src/platform.cc
+[ 5%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/message.cc.o
+[ 5%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/test_utils/compare_files.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/message.cc.o -MF CMakeFiles/ost_base.dir/message.cc.o.d -o CMakeFiles/ost_base.dir/message.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/base/src/message.cc
-[ 5%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat3_op.cc.o
-[ 5%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/boost_filesystem_helper.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/test_utils/compare_files.cc.o -MF CMakeFiles/ost_base.dir/test_utils/compare_files.cc.o.d -o CMakeFiles/ost_base.dir/test_utils/compare_files.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/base/src/test_utils/compare_files.cc
-[ 5%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec4.cc.o
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-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat2_op.cc.o -MF CMakeFiles/_ost_geom.dir/export_vecmat2_op.cc.o.d -o CMakeFiles/_ost_geom.dir/export_vecmat2_op.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/pymod/export_vecmat2_op.cc
-[ 5%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat4_op.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec3.cc.o -MF CMakeFiles/_ost_geom.dir/export_vec3.cc.o.d -o CMakeFiles/_ost_geom.dir/export_vec3.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/pymod/export_vec3.cc
+[ 5%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/boost_filesystem_helper.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/boost_filesystem_helper.cc.o -MF CMakeFiles/ost_base.dir/boost_filesystem_helper.cc.o.d -o CMakeFiles/ost_base.dir/boost_filesystem_helper.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/base/src/boost_filesystem_helper.cc
-[ 5%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_mat2.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat3_op.cc.o -MF CMakeFiles/_ost_geom.dir/export_vecmat3_op.cc.o.d -o CMakeFiles/_ost_geom.dir/export_vecmat3_op.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/pymod/export_vecmat3_op.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec4.cc.o -MF CMakeFiles/_ost_geom.dir/export_vec4.cc.o.d -o CMakeFiles/_ost_geom.dir/export_vec4.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/pymod/export_vec4.cc
-[ 5%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_mat3.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat4_op.cc.o -MF CMakeFiles/_ost_geom.dir/export_vecmat4_op.cc.o.d -o CMakeFiles/_ost_geom.dir/export_vecmat4_op.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/pymod/export_vecmat4_op.cc
[ 5%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_mat4.cc.o
-[ 6%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite2.cc.o
-[ 6%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite3.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/wrap_geom.cc.o -MF CMakeFiles/_ost_geom.dir/wrap_geom.cc.o.d -o CMakeFiles/_ost_geom.dir/wrap_geom.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/pymod/wrap_geom.cc
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_mat4.cc.o -MF CMakeFiles/_ost_geom.dir/export_mat4.cc.o.d -o CMakeFiles/_ost_geom.dir/export_mat4.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/pymod/export_mat4.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_mat2.cc.o -MF CMakeFiles/_ost_geom.dir/export_mat2.cc.o.d -o CMakeFiles/_ost_geom.dir/export_mat2.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/pymod/export_mat2.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_mat3.cc.o -MF CMakeFiles/_ost_geom.dir/export_mat3.cc.o.d -o CMakeFiles/_ost_geom.dir/export_mat3.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/pymod/export_mat3.cc
+[ 5%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite2.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite2.cc.o -MF CMakeFiles/_ost_geom.dir/export_composite2.cc.o.d -o CMakeFiles/_ost_geom.dir/export_composite2.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/pymod/export_composite2.cc
+[ 6%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite3.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite3.cc.o -MF CMakeFiles/_ost_geom.dir/export_composite3.cc.o.d -o CMakeFiles/_ost_geom.dir/export_composite3.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/pymod/export_composite3.cc
-[ 6%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite2_op.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite2_op.cc.o -MF CMakeFiles/_ost_geom.dir/export_composite2_op.cc.o.d -o CMakeFiles/_ost_geom.dir/export_composite2_op.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/pymod/export_composite2_op.cc
-[ 6%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite3_op.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite3_op.cc.o -MF CMakeFiles/_ost_geom.dir/export_composite3_op.cc.o.d -o CMakeFiles/_ost_geom.dir/export_composite3_op.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/pymod/export_composite3_op.cc
-[ 6%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_quat.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_quat.cc.o -MF CMakeFiles/_ost_geom.dir/export_quat.cc.o.d -o CMakeFiles/_ost_geom.dir/export_quat.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/pymod/export_quat.cc
-[ 6%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_transform.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_transform.cc.o -MF CMakeFiles/_ost_geom.dir/export_transform.cc.o.d -o CMakeFiles/_ost_geom.dir/export_transform.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/pymod/export_transform.cc
[ 6%] Linking CXX shared library ../../../stage/lib/libost_base.so
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_base.dir/link.txt --verbose=1
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cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_base.so.2.9.2 ../../../stage/lib/libost_base.so.2.9 ../../../stage/lib/libost_base.so
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
[ 6%] Built target ost_base
+[ 6%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite2_op.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite2_op.cc.o -MF CMakeFiles/_ost_geom.dir/export_composite2_op.cc.o.d -o CMakeFiles/_ost_geom.dir/export_composite2_op.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/pymod/export_composite2_op.cc
make -f modules/info/src/CMakeFiles/ost_info.dir/build.make modules/info/src/CMakeFiles/ost_info.dir/depend
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cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/info/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src/CMakeFiles/ost_info.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
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make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 6%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_group.cc.o
+[ 6%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite3_op.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite3_op.cc.o -MF CMakeFiles/_ost_geom.dir/export_composite3_op.cc.o.d -o CMakeFiles/_ost_geom.dir/export_composite3_op.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/pymod/export_composite3_op.cc
+[ 6%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_impl.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_impl.cc.o -MF CMakeFiles/ost_info.dir/info_impl.cc.o.d -o CMakeFiles/ost_info.dir/info_impl.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/info/src/info_impl.cc
+[ 7%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_handle.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_handle.cc.o -MF CMakeFiles/ost_info.dir/info_handle.cc.o.d -o CMakeFiles/ost_info.dir/info_handle.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/info/src/info_handle.cc
+[ 7%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_quat.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_quat.cc.o -MF CMakeFiles/_ost_geom.dir/export_quat.cc.o.d -o CMakeFiles/_ost_geom.dir/export_quat.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/pymod/export_quat.cc
+[ 7%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_group.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_group.cc.o -MF CMakeFiles/ost_info.dir/info_group.cc.o.d -o CMakeFiles/ost_info.dir/info_group.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/info/src/info_group.cc
-[ 6%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_item.cc.o
+[ 7%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_item.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_item.cc.o -MF CMakeFiles/ost_info.dir/info_item.cc.o.d -o CMakeFiles/ost_info.dir/info_item.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/info/src/info_item.cc
-[ 6%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_set.cc.o
-[ 6%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_path.cc.o
+[ 7%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_path.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_path.cc.o -MF CMakeFiles/ost_info.dir/info_path.cc.o.d -o CMakeFiles/ost_info.dir/info_path.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/info/src/info_path.cc
+[ 7%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_transform.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_transform.cc.o -MF CMakeFiles/_ost_geom.dir/export_transform.cc.o.d -o CMakeFiles/_ost_geom.dir/export_transform.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/pymod/export_transform.cc
+[ 7%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_set.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_set.cc.o -MF CMakeFiles/ost_info.dir/info_set.cc.o.d -o CMakeFiles/ost_info.dir/info_set.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/info/src/info_set.cc
-[ 7%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_handle.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_handle.cc.o -MF CMakeFiles/ost_info.dir/info_handle.cc.o.d -o CMakeFiles/ost_info.dir/info_handle.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/info/src/info_handle.cc
-[ 7%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_impl.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_impl.cc.o -MF CMakeFiles/ost_info.dir/info_impl.cc.o.d -o CMakeFiles/ost_info.dir/info_impl.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/info/src/info_impl.cc
[ 7%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_visitor.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_visitor.cc.o -MF CMakeFiles/ost_info.dir/info_visitor.cc.o.d -o CMakeFiles/ost_info.dir/info_visitor.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/info/src/info_visitor.cc
[ 7%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/geom_info_conversion.cc.o
@@ -17896,12 +17932,12 @@
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
[ 7%] Building CXX object modules/base/pymod/CMakeFiles/_ost_base.dir/export_logger.cc.o
[ 7%] Building CXX object modules/base/pymod/CMakeFiles/_ost_base.dir/wrap_base.cc.o
-[ 7%] Building CXX object modules/base/pymod/CMakeFiles/_ost_base.dir/export_range.cc.o
-[ 7%] Building CXX object modules/base/pymod/CMakeFiles/_ost_base.dir/export_units.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_ost_base_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/pymod/CMakeFiles/_ost_base.dir/wrap_base.cc.o -MF CMakeFiles/_ost_base.dir/wrap_base.cc.o.d -o CMakeFiles/_ost_base.dir/wrap_base.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/base/pymod/wrap_base.cc
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_ost_base_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/pymod/CMakeFiles/_ost_base.dir/export_logger.cc.o -MF CMakeFiles/_ost_base.dir/export_logger.cc.o.d -o CMakeFiles/_ost_base.dir/export_logger.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/base/pymod/export_logger.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_ost_base_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/pymod/CMakeFiles/_ost_base.dir/export_range.cc.o -MF CMakeFiles/_ost_base.dir/export_range.cc.o.d -o CMakeFiles/_ost_base.dir/export_range.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/base/pymod/export_range.cc
+[ 7%] Building CXX object modules/base/pymod/CMakeFiles/_ost_base.dir/export_units.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_ost_base_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/pymod/CMakeFiles/_ost_base.dir/export_units.cc.o -MF CMakeFiles/_ost_base.dir/export_units.cc.o.d -o CMakeFiles/_ost_base.dir/export_units.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/base/pymod/export_units.cc
+[ 7%] Building CXX object modules/base/pymod/CMakeFiles/_ost_base.dir/export_range.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_ost_base_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/pymod/CMakeFiles/_ost_base.dir/export_range.cc.o -MF CMakeFiles/_ost_base.dir/export_range.cc.o.d -o CMakeFiles/_ost_base.dir/export_range.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/base/pymod/export_range.cc
[ 7%] Linking CXX shared library ../../../stage/lib/libost_info.so
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_info.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/ost_info.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_info.so.2.9 -o ../../../stage/lib/libost_info.so.2.9.2 CMakeFiles/ost_info.dir/info_impl.cc.o CMakeFiles/ost_info.dir/info_handle.cc.o CMakeFiles/ost_info.dir/info_group.cc.o CMakeFiles/ost_info.dir/info_item.cc.o CMakeFiles/ost_info.dir/info_path.cc.o CMakeFiles/ost_info.dir/info_set.cc.o CMakeFiles/ost_info.dir/info_visitor.cc.o CMakeFiles/ost_info.dir/geom_info_conversion.cc.o CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib: /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 ../../../stage/lib/libost_base.so.2.9.2 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15 ../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0
@@ -17911,8 +17947,8 @@
make -f modules/mol/base/src/CMakeFiles/ost_mol.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol.dir/depend
make -f modules/img/base/src/CMakeFiles/ost_img.dir/build.make modules/img/base/src/CMakeFiles/ost_img.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol.dir/DependInfo.cmake "--color="
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/img/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src/CMakeFiles/ost_img.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
@@ -17920,116 +17956,116 @@
make -f modules/img/base/src/CMakeFiles/ost_img.dir/build.make modules/img/base/src/CMakeFiles/ost_img.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 7%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/data_observer.cc.o
-[ 7%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/atom_base.cc.o
-[ 7%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/composite_mask.cc.o
[ 7%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/circle_mask.cc.o
-[ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/data_algorithm.cc.o
-[ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/data.cc.o
-[ 8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/atom_handle.cc.o
-[ 8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/atom_view.cc.o
-[ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/extent_mask.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/circle_mask.cc.o -MF CMakeFiles/ost_img.dir/circle_mask.cc.o.d -o CMakeFiles/ost_img.dir/circle_mask.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/circle_mask.cc
-[ 8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/bond_handle.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/atom_base.cc.o -MF CMakeFiles/ost_mol.dir/atom_base.cc.o.d -o CMakeFiles/ost_mol.dir/atom_base.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/atom_base.cc
-[ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/extent_iterator.cc.o
+[ 7%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/composite_mask.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/composite_mask.cc.o -MF CMakeFiles/ost_img.dir/composite_mask.cc.o.d -o CMakeFiles/ost_img.dir/composite_mask.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/composite_mask.cc
+[ 7%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/atom_base.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/atom_base.cc.o -MF CMakeFiles/ost_mol.dir/atom_base.cc.o.d -o CMakeFiles/ost_mol.dir/atom_base.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/atom_base.cc
+[ 7%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/data.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/data.cc.o -MF CMakeFiles/ost_img.dir/data.cc.o.d -o CMakeFiles/ost_img.dir/data.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/data.cc
+[ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/data_algorithm.cc.o
+[ 8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/atom_handle.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/atom_handle.cc.o -MF CMakeFiles/ost_mol.dir/atom_handle.cc.o.d -o CMakeFiles/ost_mol.dir/atom_handle.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/atom_handle.cc
-[ 8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_handle.cc.o
+[ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/data_observer.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/data_algorithm.cc.o -MF CMakeFiles/ost_img.dir/data_algorithm.cc.o.d -o CMakeFiles/ost_img.dir/data_algorithm.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/data_algorithm.cc
-[ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_factory.cc.o
+[ 8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/atom_view.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/atom_view.cc.o -MF CMakeFiles/ost_mol.dir/atom_view.cc.o.d -o CMakeFiles/ost_mol.dir/atom_view.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/atom_view.cc
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/data_observer.cc.o -MF CMakeFiles/ost_img.dir/data_observer.cc.o.d -o CMakeFiles/ost_img.dir/data_observer.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/data_observer.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/bond_handle.cc.o -MF CMakeFiles/ost_mol.dir/bond_handle.cc.o.d -o CMakeFiles/ost_mol.dir/bond_handle.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/bond_handle.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/data.cc.o -MF CMakeFiles/ost_img.dir/data.cc.o.d -o CMakeFiles/ost_img.dir/data.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/data.cc
-[ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/extent.cc.o
-[ 10%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_base.cc.o
-[ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_impl.cc.o
+[ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/extent_iterator.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/extent_iterator.cc.o -MF CMakeFiles/ost_img.dir/extent_iterator.cc.o.d -o CMakeFiles/ost_img.dir/extent_iterator.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/extent_iterator.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_handle.cc.o -MF CMakeFiles/ost_mol.dir/chain_handle.cc.o.d -o CMakeFiles/ost_mol.dir/chain_handle.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/chain_handle.cc
-[ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_handle.cc.o
+[ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/extent_mask.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/extent_mask.cc.o -MF CMakeFiles/ost_img.dir/extent_mask.cc.o.d -o CMakeFiles/ost_img.dir/extent_mask.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/extent_mask.cc
+[ 8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/bond_handle.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/bond_handle.cc.o -MF CMakeFiles/ost_mol.dir/bond_handle.cc.o.d -o CMakeFiles/ost_mol.dir/bond_handle.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/bond_handle.cc
+[ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/extent.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/extent.cc.o -MF CMakeFiles/ost_img.dir/extent.cc.o.d -o CMakeFiles/ost_img.dir/extent.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/extent.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_base.cc.o -MF CMakeFiles/ost_mol.dir/chain_base.cc.o.d -o CMakeFiles/ost_mol.dir/chain_base.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/chain_base.cc
+[ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_factory.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/image_factory.cc.o -MF CMakeFiles/ost_img.dir/image_factory.cc.o.d -o CMakeFiles/ost_img.dir/image_factory.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_factory.cc
+[ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_handle.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/image_handle.cc.o -MF CMakeFiles/ost_img.dir/image_handle.cc.o.d -o CMakeFiles/ost_img.dir/image_handle.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_handle.cc
+[ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_impl.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/image_impl.cc.o -MF CMakeFiles/ost_img.dir/image_impl.cc.o.d -o CMakeFiles/ost_img.dir/image_impl.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_impl.cc
-[ 10%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_view.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_view.cc.o -MF CMakeFiles/ost_mol.dir/chain_view.cc.o.d -o CMakeFiles/ost_mol.dir/chain_view.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/chain_view.cc
+[ 10%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_base.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_base.cc.o -MF CMakeFiles/ost_mol.dir/chain_base.cc.o.d -o CMakeFiles/ost_mol.dir/chain_base.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/chain_base.cc
+[ 10%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_handle.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_handle.cc.o -MF CMakeFiles/ost_mol.dir/chain_handle.cc.o.d -o CMakeFiles/ost_mol.dir/chain_handle.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/chain_handle.cc
[ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_list.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/image_list.cc.o -MF CMakeFiles/ost_img.dir/image_list.cc.o.d -o CMakeFiles/ost_img.dir/image_list.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_list.cc
-[ 10%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_type.cc.o
-[ 10%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_frame.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_type.cc.o -MF CMakeFiles/ost_mol.dir/chain_type.cc.o.d -o CMakeFiles/ost_mol.dir/chain_type.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/chain_type.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_frame.cc.o -MF CMakeFiles/ost_mol.dir/coord_frame.cc.o.d -o CMakeFiles/ost_mol.dir/coord_frame.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/coord_frame.cc
[ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/inverted_mask.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/inverted_mask.cc.o -MF CMakeFiles/ost_img.dir/inverted_mask.cc.o.d -o CMakeFiles/ost_img.dir/inverted_mask.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/inverted_mask.cc
[ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/map.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/map.cc.o -MF CMakeFiles/ost_img.dir/map.cc.o.d -o CMakeFiles/ost_img.dir/map.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/map.cc
+[ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_view.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_view.cc.o -MF CMakeFiles/ost_mol.dir/chain_view.cc.o.d -o CMakeFiles/ost_mol.dir/chain_view.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/chain_view.cc
+[ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/mask_op.cc.o
[ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/mask_base.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/mask_base.cc.o -MF CMakeFiles/ost_img.dir/mask_base.cc.o.d -o CMakeFiles/ost_img.dir/mask_base.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/mask_base.cc
-[ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/mask_op.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/mask_op.cc.o -MF CMakeFiles/ost_img.dir/mask_op.cc.o.d -o CMakeFiles/ost_img.dir/mask_op.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/mask_op.cc
+[ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_type.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_type.cc.o -MF CMakeFiles/ost_mol.dir/chain_type.cc.o.d -o CMakeFiles/ost_mol.dir/chain_type.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/chain_type.cc
+[ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_frame.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_frame.cc.o -MF CMakeFiles/ost_mol.dir/coord_frame.cc.o.d -o CMakeFiles/ost_mol.dir/coord_frame.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/coord_frame.cc
[ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/mask.cc.o
-[ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_group.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_group.cc.o -MF CMakeFiles/ost_mol.dir/coord_group.cc.o.d -o CMakeFiles/ost_mol.dir/coord_group.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/coord_group.cc
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/mask.cc.o -MF CMakeFiles/ost_img.dir/mask.cc.o.d -o CMakeFiles/ost_img.dir/mask.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/mask.cc
[ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/observable.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/observable.cc.o -MF CMakeFiles/ost_img.dir/observable.cc.o.d -o CMakeFiles/ost_img.dir/observable.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/observable.cc
+[ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_group.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_group.cc.o -MF CMakeFiles/ost_mol.dir/coord_group.cc.o.d -o CMakeFiles/ost_mol.dir/coord_group.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/coord_group.cc
[ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/paste_impl.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/paste_impl.cc.o -MF CMakeFiles/ost_img.dir/paste_impl.cc.o.d -o CMakeFiles/ost_img.dir/paste_impl.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/paste_impl.cc
[ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/editor_base.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/editor_base.cc.o -MF CMakeFiles/ost_mol.dir/editor_base.cc.o.d -o CMakeFiles/ost_mol.dir/editor_base.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/editor_base.cc
-[ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_base.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_base.cc.o -MF CMakeFiles/ost_mol.dir/entity_base.cc.o.d -o CMakeFiles/ost_mol.dir/entity_base.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/entity_base.cc
[ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/peak.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/peak.cc.o -MF CMakeFiles/ost_img.dir/peak.cc.o.d -o CMakeFiles/ost_img.dir/peak.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/peak.cc
-[ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_handle.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_handle.cc.o -MF CMakeFiles/ost_mol.dir/entity_handle.cc.o.d -o CMakeFiles/ost_mol.dir/entity_handle.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/entity_handle.cc
-[ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_observer.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_observer.cc.o -MF CMakeFiles/ost_mol.dir/entity_observer.cc.o.d -o CMakeFiles/ost_mol.dir/entity_observer.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/entity_observer.cc
-[ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_property_mapper.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_property_mapper.cc.o -MF CMakeFiles/ost_mol.dir/entity_property_mapper.cc.o.d -o CMakeFiles/ost_mol.dir/entity_property_mapper.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/entity_property_mapper.cc
-[ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/phase.cc.o
+[ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/phase.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/phase.cc.o -MF CMakeFiles/ost_img.dir/phase.cc.o.d -o CMakeFiles/ost_img.dir/phase.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/phase.cc
-[ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_view.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_view.cc.o -MF CMakeFiles/ost_mol.dir/entity_view.cc.o.d -o CMakeFiles/ost_mol.dir/entity_view.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/entity_view.cc
-[ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/physical_units.cc.o
+[ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/physical_units.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/physical_units.cc.o -MF CMakeFiles/ost_img.dir/physical_units.cc.o.d -o CMakeFiles/ost_img.dir/physical_units.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/physical_units.cc
-[ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/pixel_sampling.cc.o
+[ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/pixel_sampling.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/pixel_sampling.cc.o -MF CMakeFiles/ost_img.dir/pixel_sampling.cc.o.d -o CMakeFiles/ost_img.dir/pixel_sampling.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/pixel_sampling.cc
-[ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/point_list.cc.o
+[ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/point_list.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/point_list.cc.o -MF CMakeFiles/ost_img.dir/point_list.cc.o.d -o CMakeFiles/ost_img.dir/point_list.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/point_list.cc
-[ 13%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/point.cc.o
+[ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/point.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/point.cc.o -MF CMakeFiles/ost_img.dir/point.cc.o.d -o CMakeFiles/ost_img.dir/point.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/point.cc
-[ 13%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_visitor.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_visitor.cc.o -MF CMakeFiles/ost_mol.dir/entity_visitor.cc.o.d -o CMakeFiles/ost_mol.dir/entity_visitor.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/entity_visitor.cc
-[ 13%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/polygon_mask.cc.o
+[ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/polygon_mask.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/polygon_mask.cc.o -MF CMakeFiles/ost_img.dir/polygon_mask.cc.o.d -o CMakeFiles/ost_img.dir/polygon_mask.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/polygon_mask.cc
-[ 13%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/progress.cc.o
+[ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_base.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_base.cc.o -MF CMakeFiles/ost_mol.dir/entity_base.cc.o.d -o CMakeFiles/ost_mol.dir/entity_base.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/entity_base.cc
+[ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_handle.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_handle.cc.o -MF CMakeFiles/ost_mol.dir/entity_handle.cc.o.d -o CMakeFiles/ost_mol.dir/entity_handle.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/entity_handle.cc
+[ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/progress.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/progress.cc.o -MF CMakeFiles/ost_img.dir/progress.cc.o.d -o CMakeFiles/ost_img.dir/progress.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/progress.cc
-[ 13%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/size.cc.o
+[ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/size.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/size.cc.o -MF CMakeFiles/ost_img.dir/size.cc.o.d -o CMakeFiles/ost_img.dir/size.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/size.cc
-[ 13%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/spherical_mask.cc.o
+[ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/spherical_mask.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/spherical_mask.cc.o -MF CMakeFiles/ost_img.dir/spherical_mask.cc.o.d -o CMakeFiles/ost_img.dir/spherical_mask.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/spherical_mask.cc
-[ 13%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/mask_info_convert.cc.o
+[ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_observer.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_observer.cc.o -MF CMakeFiles/ost_mol.dir/entity_observer.cc.o.d -o CMakeFiles/ost_mol.dir/entity_observer.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/entity_observer.cc
+[ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/mask_info_convert.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/mask_info_convert.cc.o -MF CMakeFiles/ost_img.dir/mask_info_convert.cc.o.d -o CMakeFiles/ost_img.dir/mask_info_convert.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/mask_info_convert.cc
+[ 13%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_property_mapper.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_property_mapper.cc.o -MF CMakeFiles/ost_mol.dir/entity_property_mapper.cc.o.d -o CMakeFiles/ost_mol.dir/entity_property_mapper.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/entity_property_mapper.cc
[ 13%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_state/image_state_factory.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/image_state/image_state_factory.cc.o -MF CMakeFiles/ost_img.dir/image_state/image_state_factory.cc.o.d -o CMakeFiles/ost_img.dir/image_state/image_state_factory.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_factory.cc
+[ 13%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_view.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_view.cc.o -MF CMakeFiles/ost_mol.dir/entity_view.cc.o.d -o CMakeFiles/ost_mol.dir/entity_view.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/entity_view.cc
+[ 13%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_state/index.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/image_state/index.cc.o -MF CMakeFiles/ost_img.dir/image_state/index.cc.o.d -o CMakeFiles/ost_img.dir/image_state/index.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/index.cc
+[ 13%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_state/image_state_base.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/image_state/image_state_base.cc.o -MF CMakeFiles/ost_img.dir/image_state/image_state_base.cc.o.d -o CMakeFiles/ost_img.dir/image_state/image_state_base.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_base.cc
+[ 13%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o -MF CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o.d -o CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/raster_image/raster_image.cc
+[ 13%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_visitor.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_visitor.cc.o -MF CMakeFiles/ost_mol.dir/entity_visitor.cc.o.d -o CMakeFiles/ost_mol.dir/entity_visitor.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/entity_visitor.cc
[ 13%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/ics_editor.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/ics_editor.cc.o -MF CMakeFiles/ost_mol.dir/ics_editor.cc.o.d -o CMakeFiles/ost_mol.dir/ics_editor.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/ics_editor.cc
[ 13%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/not_connected_error.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/not_connected_error.cc.o -MF CMakeFiles/ost_mol.dir/not_connected_error.cc.o.d -o CMakeFiles/ost_mol.dir/not_connected_error.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/not_connected_error.cc
[ 13%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/property_id.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/property_id.cc.o -MF CMakeFiles/ost_mol.dir/property_id.cc.o.d -o CMakeFiles/ost_mol.dir/property_id.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/property_id.cc
-[ 13%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_state/index.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/image_state/index.cc.o -MF CMakeFiles/ost_img.dir/image_state/index.cc.o.d -o CMakeFiles/ost_img.dir/image_state/index.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/index.cc
-[ 13%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_state/image_state_base.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/image_state/image_state_base.cc.o -MF CMakeFiles/ost_img.dir/image_state/image_state_base.cc.o.d -o CMakeFiles/ost_img.dir/image_state/image_state_base.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_base.cc
[ 13%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/query.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/query.cc.o -MF CMakeFiles/ost_mol.dir/query.cc.o.d -o CMakeFiles/ost_mol.dir/query.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/query.cc
-[ 13%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o -MF CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o.d -o CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/raster_image/raster_image.cc
[ 13%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/query_error.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/query_error.cc.o -MF CMakeFiles/ost_mol.dir/query_error.cc.o.d -o CMakeFiles/ost_mol.dir/query_error.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/query_error.cc
[ 13%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/query_state.cc.o
@@ -18043,8 +18079,8 @@
[ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/surface_builder.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/surface_builder.cc.o -MF CMakeFiles/ost_mol.dir/surface_builder.cc.o.d -o CMakeFiles/ost_mol.dir/surface_builder.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/surface_builder.cc
[ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/surface_handle.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/surface_handle.cc.o -MF CMakeFiles/ost_mol.dir/surface_handle.cc.o.d -o CMakeFiles/ost_mol.dir/surface_handle.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/surface_handle.cc
[ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/transfer_connectivity.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/surface_handle.cc.o -MF CMakeFiles/ost_mol.dir/surface_handle.cc.o.d -o CMakeFiles/ost_mol.dir/surface_handle.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/surface_handle.cc
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/transfer_connectivity.cc.o -MF CMakeFiles/ost_mol.dir/transfer_connectivity.cc.o.d -o CMakeFiles/ost_mol.dir/transfer_connectivity.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/transfer_connectivity.cc
[ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/torsion_handle.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/torsion_handle.cc.o -MF CMakeFiles/ost_mol.dir/torsion_handle.cc.o.d -o CMakeFiles/ost_mol.dir/torsion_handle.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/torsion_handle.cc
@@ -18052,79 +18088,79 @@
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/query_view_wrapper.cc.o -MF CMakeFiles/ost_mol.dir/query_view_wrapper.cc.o.d -o CMakeFiles/ost_mol.dir/query_view_wrapper.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/query_view_wrapper.cc
[ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/view_op.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/view_op.cc.o -MF CMakeFiles/ost_mol.dir/view_op.cc.o.d -o CMakeFiles/ost_mol.dir/view_op.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/view_op.cc
-[ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_source.cc.o
+[ 16%] Linking CXX shared library ../../../../stage/lib/libost_img.so
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_img.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/ost_img.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_img.so.2.9 -o ../../../../stage/lib/libost_img.so.2.9.2 CMakeFiles/ost_img.dir/circle_mask.cc.o CMakeFiles/ost_img.dir/composite_mask.cc.o CMakeFiles/ost_img.dir/data_algorithm.cc.o CMakeFiles/ost_img.dir/data_observer.cc.o CMakeFiles/ost_img.dir/data.cc.o CMakeFiles/ost_img.dir/extent_iterator.cc.o CMakeFiles/ost_img.dir/extent_mask.cc.o CMakeFiles/ost_img.dir/extent.cc.o CMakeFiles/ost_img.dir/image_factory.cc.o CMakeFiles/ost_img.dir/image_handle.cc.o CMakeFiles/ost_img.dir/image_impl.cc.o CMakeFiles/ost_img.dir/image_list.cc.o CMakeFiles/ost_img.dir/inverted_mask.cc.o CMakeFiles/ost_img.dir/map.cc.o CMakeFiles/ost_img.dir/mask_base.cc.o CMakeFiles/ost_img.dir/mask_op.cc.o CMakeFiles/ost_img.dir/mask.cc.o CMakeFiles/ost_img.dir/observable.cc.o CMakeFiles/ost_img.dir/paste_impl.cc.o CMakeFiles/ost_img.dir/peak.cc.o CMakeFiles/ost_img.dir/phase.cc.o CMakeFiles/ost_img.dir/physical_units.cc.o CMakeFiles/ost_img.dir/pixel_sampling.cc.o CMakeFiles/ost_img.dir/point_list.cc.o CMakeFiles/ost_img.dir/point.cc.o CMakeFiles/ost_img.dir/polygon_mask.cc.o CMakeFiles/ost_img.dir/progress.cc.o CMakeFiles/ost_img.dir/size.cc.o CMakeFiles/ost_img.dir/spherical_mask.cc.o CMakeFiles/ost_img.dir/mask_info_convert.cc.o CMakeFiles/ost_img.dir/image_state/image_state_factory.cc.o CMakeFiles/ost_img.dir/image_state/index.cc.o CMakeFiles/ost_img.dir/image_state/image_state_base.cc.o CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib: ../../../../stage/lib/libost_info.so.2.9.2 ../../../../stage/lib/libost_base.so.2.9.2 ../../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_img.so.2.9.2 ../../../../stage/lib/libost_img.so.2.9 ../../../../stage/lib/libost_img.so
+[ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_source.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_source.cc.o -MF CMakeFiles/ost_mol.dir/coord_source.cc.o.d -o CMakeFiles/ost_mol.dir/coord_source.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/coord_source.cc
-[ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/in_mem_coord_source.cc.o
+[ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/in_mem_coord_source.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/in_mem_coord_source.cc.o -MF CMakeFiles/ost_mol.dir/in_mem_coord_source.cc.o.d -o CMakeFiles/ost_mol.dir/in_mem_coord_source.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/in_mem_coord_source.cc
-[ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/bounding_box.cc.o
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 16%] Built target ost_img
+[ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/bounding_box.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/bounding_box.cc.o -MF CMakeFiles/ost_mol.dir/bounding_box.cc.o.d -o CMakeFiles/ost_mol.dir/bounding_box.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/bounding_box.cc
-[ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/xcs_editor.cc.o
+[ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/xcs_editor.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/xcs_editor.cc.o -MF CMakeFiles/ost_mol.dir/xcs_editor.cc.o.d -o CMakeFiles/ost_mol.dir/xcs_editor.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/xcs_editor.cc
-[ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/atom_impl.cc.o
+[ 17%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/atom_impl.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/atom_impl.cc.o -MF CMakeFiles/ost_mol.dir/impl/atom_impl.cc.o.d -o CMakeFiles/ost_mol.dir/impl/atom_impl.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/atom_impl.cc
-[ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/chain_impl.cc.o
-[ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/connector_impl.cc.o
+[ 17%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/chain_impl.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/chain_impl.cc.o -MF CMakeFiles/ost_mol.dir/impl/chain_impl.cc.o.d -o CMakeFiles/ost_mol.dir/impl/chain_impl.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/chain_impl.cc
+[ 17%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/connector_impl.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/connector_impl.cc.o -MF CMakeFiles/ost_mol.dir/impl/connector_impl.cc.o.d -o CMakeFiles/ost_mol.dir/impl/connector_impl.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/connector_impl.cc
-[ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/dihedral.cc.o
+[ 17%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/dihedral.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/dihedral.cc.o -MF CMakeFiles/ost_mol.dir/impl/dihedral.cc.o.d -o CMakeFiles/ost_mol.dir/impl/dihedral.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/dihedral.cc
-[ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/entity_impl.cc.o
+[ 17%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/entity_impl.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/entity_impl.cc.o -MF CMakeFiles/ost_mol.dir/impl/entity_impl.cc.o.d -o CMakeFiles/ost_mol.dir/impl/entity_impl.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/entity_impl.cc
-[ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/fragment_impl.cc.o
+[ 17%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/fragment_impl.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/fragment_impl.cc.o -MF CMakeFiles/ost_mol.dir/impl/fragment_impl.cc.o.d -o CMakeFiles/ost_mol.dir/impl/fragment_impl.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/fragment_impl.cc
-[ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/query_ast.cc.o
+[ 17%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/query_ast.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/query_ast.cc.o -MF CMakeFiles/ost_mol.dir/impl/query_ast.cc.o.d -o CMakeFiles/ost_mol.dir/impl/query_ast.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/query_ast.cc
-[ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/query_impl.cc.o
+[ 17%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/query_impl.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/query_impl.cc.o -MF CMakeFiles/ost_mol.dir/impl/query_impl.cc.o.d -o CMakeFiles/ost_mol.dir/impl/query_impl.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/query_impl.cc
-[ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/residue_impl.cc.o
+[ 17%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/residue_impl.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/residue_impl.cc.o -MF CMakeFiles/ost_mol.dir/impl/residue_impl.cc.o.d -o CMakeFiles/ost_mol.dir/impl/residue_impl.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/residue_impl.cc
-[ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/surface_impl.cc.o
+[ 17%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/surface_impl.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/surface_impl.cc.o -MF CMakeFiles/ost_mol.dir/impl/surface_impl.cc.o.d -o CMakeFiles/ost_mol.dir/impl/surface_impl.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/surface_impl.cc
-[ 17%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/torsion_impl.cc.o
+[ 18%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/torsion_impl.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/torsion_impl.cc.o -MF CMakeFiles/ost_mol.dir/impl/torsion_impl.cc.o.d -o CMakeFiles/ost_mol.dir/impl/torsion_impl.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/torsion_impl.cc
-[ 17%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/atom_prop.cc.o
+[ 18%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/atom_prop.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/atom_prop.cc.o -MF CMakeFiles/ost_mol.dir/impl/atom_prop.cc.o.d -o CMakeFiles/ost_mol.dir/impl/atom_prop.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/atom_prop.cc
-[ 18%] Linking CXX shared library ../../../../stage/lib/libost_img.so
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_img.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/ost_img.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_img.so.2.9 -o ../../../../stage/lib/libost_img.so.2.9.2 CMakeFiles/ost_img.dir/circle_mask.cc.o CMakeFiles/ost_img.dir/composite_mask.cc.o CMakeFiles/ost_img.dir/data_algorithm.cc.o CMakeFiles/ost_img.dir/data_observer.cc.o CMakeFiles/ost_img.dir/data.cc.o CMakeFiles/ost_img.dir/extent_iterator.cc.o CMakeFiles/ost_img.dir/extent_mask.cc.o CMakeFiles/ost_img.dir/extent.cc.o CMakeFiles/ost_img.dir/image_factory.cc.o CMakeFiles/ost_img.dir/image_handle.cc.o CMakeFiles/ost_img.dir/image_impl.cc.o CMakeFiles/ost_img.dir/image_list.cc.o CMakeFiles/ost_img.dir/inverted_mask.cc.o CMakeFiles/ost_img.dir/map.cc.o CMakeFiles/ost_img.dir/mask_base.cc.o CMakeFiles/ost_img.dir/mask_op.cc.o CMakeFiles/ost_img.dir/mask.cc.o CMakeFiles/ost_img.dir/observable.cc.o CMakeFiles/ost_img.dir/paste_impl.cc.o CMakeFiles/ost_img.dir/peak.cc.o CMakeFiles/ost_img.dir/phase.cc.o CMakeFiles/ost_img.dir/physical_units.cc.o CMakeFiles/ost_img.dir/pixel_sampling.cc.o CMakeFiles/ost_img.dir/point_list.cc.o CMakeFiles/ost_img.dir/point.cc.o CMakeFiles/ost_img.dir/polygon_mask.cc.o CMakeFiles/ost_img.dir/progress.cc.o CMakeFiles/ost_img.dir/size.cc.o CMakeFiles/ost_img.dir/spherical_mask.cc.o CMakeFiles/ost_img.dir/mask_info_convert.cc.o CMakeFiles/ost_img.dir/image_state/image_state_factory.cc.o CMakeFiles/ost_img.dir/image_state/index.cc.o CMakeFiles/ost_img.dir/image_state/image_state_base.cc.o CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib: ../../../../stage/lib/libost_info.so.2.9.2 ../../../../stage/lib/libost_base.so.2.9.2 ../../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_img.so.2.9.2 ../../../../stage/lib/libost_img.so.2.9 ../../../../stage/lib/libost_img.so
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 18%] Built target ost_img
make -f modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make -f modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/anisotropic.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/anisotropic.cc.o -MF CMakeFiles/ost_img_alg.dir/anisotropic.cc.o.d -o CMakeFiles/ost_img_alg.dir/anisotropic.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/anisotropic.cc
[ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/auto_correlate.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/auto_correlate.cc.o -MF CMakeFiles/ost_img_alg.dir/auto_correlate.cc.o.d -o CMakeFiles/ost_img_alg.dir/auto_correlate.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/auto_correlate.cc
[ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/cross_correlate.cc.o
-[ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/anisotropic.cc.o
[ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/convolute.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/cross_correlate.cc.o -MF CMakeFiles/ost_img_alg.dir/cross_correlate.cc.o.d -o CMakeFiles/ost_img_alg.dir/cross_correlate.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/cross_correlate.cc
[ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/correlate.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/anisotropic.cc.o -MF CMakeFiles/ost_img_alg.dir/anisotropic.cc.o.d -o CMakeFiles/ost_img_alg.dir/anisotropic.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/anisotropic.cc
-[ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/density_slice.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/auto_correlate.cc.o -MF CMakeFiles/ost_img_alg.dir/auto_correlate.cc.o.d -o CMakeFiles/ost_img_alg.dir/auto_correlate.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/auto_correlate.cc
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/convolute.cc.o -MF CMakeFiles/ost_img_alg.dir/convolute.cc.o.d -o CMakeFiles/ost_img_alg.dir/convolute.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/convolute.cc
-[ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/dft.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/correlate.cc.o -MF CMakeFiles/ost_img_alg.dir/correlate.cc.o.d -o CMakeFiles/ost_img_alg.dir/correlate.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/correlate.cc
-[ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/fft.cc.o
-[ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/gaussian_gradient_magnitude.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/cross_correlate.cc.o -MF CMakeFiles/ost_img_alg.dir/cross_correlate.cc.o.d -o CMakeFiles/ost_img_alg.dir/cross_correlate.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/cross_correlate.cc
-[ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/fourier_filters.cc.o
+[ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/density_slice.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/density_slice.cc.o -MF CMakeFiles/ost_img_alg.dir/density_slice.cc.o.d -o CMakeFiles/ost_img_alg.dir/density_slice.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/density_slice.cc
-[ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/gaussian.cc.o
+[ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/dft.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/dft.cc.o -MF CMakeFiles/ost_img_alg.dir/dft.cc.o.d -o CMakeFiles/ost_img_alg.dir/dft.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/dft.cc
+[ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/fft.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/fft.cc.o -MF CMakeFiles/ost_img_alg.dir/fft.cc.o.d -o CMakeFiles/ost_img_alg.dir/fft.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/fft.cc
-[ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/gaussian_laplacian.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/gaussian_gradient_magnitude.cc.o -MF CMakeFiles/ost_img_alg.dir/gaussian_gradient_magnitude.cc.o.d -o CMakeFiles/ost_img_alg.dir/gaussian_gradient_magnitude.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/gaussian_gradient_magnitude.cc
-[ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/highest_peak_search_3d.cc.o
+[ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/fourier_filters.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/fourier_filters.cc.o -MF CMakeFiles/ost_img_alg.dir/fourier_filters.cc.o.d -o CMakeFiles/ost_img_alg.dir/fourier_filters.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/fourier_filters.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/dft.cc.o -MF CMakeFiles/ost_img_alg.dir/dft.cc.o.d -o CMakeFiles/ost_img_alg.dir/dft.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/dft.cc
-[ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/line_iterator.cc.o
-[ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/histogram.cc.o
+[ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/gaussian.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/gaussian.cc.o -MF CMakeFiles/ost_img_alg.dir/gaussian.cc.o.d -o CMakeFiles/ost_img_alg.dir/gaussian.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/gaussian.cc
+[ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/gaussian_gradient_magnitude.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/gaussian_gradient_magnitude.cc.o -MF CMakeFiles/ost_img_alg.dir/gaussian_gradient_magnitude.cc.o.d -o CMakeFiles/ost_img_alg.dir/gaussian_gradient_magnitude.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/gaussian_gradient_magnitude.cc
+[ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/gaussian_laplacian.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/gaussian_laplacian.cc.o -MF CMakeFiles/ost_img_alg.dir/gaussian_laplacian.cc.o.d -o CMakeFiles/ost_img_alg.dir/gaussian_laplacian.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/gaussian_laplacian.cc
+[ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/highest_peak_search_3d.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/highest_peak_search_3d.cc.o -MF CMakeFiles/ost_img_alg.dir/highest_peak_search_3d.cc.o.d -o CMakeFiles/ost_img_alg.dir/highest_peak_search_3d.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/highest_peak_search_3d.cc
+[ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/histogram.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/histogram.cc.o -MF CMakeFiles/ost_img_alg.dir/histogram.cc.o.d -o CMakeFiles/ost_img_alg.dir/histogram.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/histogram.cc
+[ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/line_iterator.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/line_iterator.cc.o -MF CMakeFiles/ost_img_alg.dir/line_iterator.cc.o.d -o CMakeFiles/ost_img_alg.dir/line_iterator.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/line_iterator.cc
[ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/local_sigma_threshold.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/local_sigma_threshold.cc.o -MF CMakeFiles/ost_img_alg.dir/local_sigma_threshold.cc.o.d -o CMakeFiles/ost_img_alg.dir/local_sigma_threshold.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/local_sigma_threshold.cc
@@ -18132,22 +18168,28 @@
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/mask_image.cc.o -MF CMakeFiles/ost_img_alg.dir/mask_image.cc.o.d -o CMakeFiles/ost_img_alg.dir/mask_image.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/mask_image.cc
[ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/normalizer.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/normalizer.cc.o -MF CMakeFiles/ost_img_alg.dir/normalizer.cc.o.d -o CMakeFiles/ost_img_alg.dir/normalizer.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/normalizer.cc
-[ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/normalizer_factory.cc.o
-[ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_od.cc.o
-[ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_log.cc.o
-[ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_linear.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_od.cc.o -MF CMakeFiles/ost_img_alg.dir/norm_od.cc.o.d -o CMakeFiles/ost_img_alg.dir/norm_od.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/norm_od.cc
+[ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/normalizer_factory.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/normalizer_factory.cc.o -MF CMakeFiles/ost_img_alg.dir/normalizer_factory.cc.o.d -o CMakeFiles/ost_img_alg.dir/normalizer_factory.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/normalizer_factory.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_log.cc.o -MF CMakeFiles/ost_img_alg.dir/norm_log.cc.o.d -o CMakeFiles/ost_img_alg.dir/norm_log.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/norm_log.cc
+[ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_linear.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_linear.cc.o -MF CMakeFiles/ost_img_alg.dir/norm_linear.cc.o.d -o CMakeFiles/ost_img_alg.dir/norm_linear.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/norm_linear.cc
+[ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_log.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_log.cc.o -MF CMakeFiles/ost_img_alg.dir/norm_log.cc.o.d -o CMakeFiles/ost_img_alg.dir/norm_log.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/norm_log.cc
+[ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_od.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_od.cc.o -MF CMakeFiles/ost_img_alg.dir/norm_od.cc.o.d -o CMakeFiles/ost_img_alg.dir/norm_od.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/norm_od.cc
+[ 21%] Linking CXX shared library ../../../../stage/lib/libost_mol.so
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_mol.dir/link.txt --verbose=1
+[ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/randomize.cc.o
[ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/power_spectrum.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/power_spectrum.cc.o -MF CMakeFiles/ost_img_alg.dir/power_spectrum.cc.o.d -o CMakeFiles/ost_img_alg.dir/power_spectrum.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/power_spectrum.cc
-[ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/randomize.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/randomize.cc.o -MF CMakeFiles/ost_img_alg.dir/randomize.cc.o.d -o CMakeFiles/ost_img_alg.dir/randomize.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/randomize.cc
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/ost_mol.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_mol.so.2.9 -o ../../../../stage/lib/libost_mol.so.2.9.2 CMakeFiles/ost_mol.dir/atom_base.cc.o CMakeFiles/ost_mol.dir/atom_handle.cc.o CMakeFiles/ost_mol.dir/atom_view.cc.o CMakeFiles/ost_mol.dir/bond_handle.cc.o CMakeFiles/ost_mol.dir/chain_base.cc.o CMakeFiles/ost_mol.dir/chain_handle.cc.o CMakeFiles/ost_mol.dir/chain_view.cc.o CMakeFiles/ost_mol.dir/chain_type.cc.o CMakeFiles/ost_mol.dir/coord_frame.cc.o CMakeFiles/ost_mol.dir/coord_group.cc.o CMakeFiles/ost_mol.dir/editor_base.cc.o CMakeFiles/ost_mol.dir/entity_base.cc.o CMakeFiles/ost_mol.dir/entity_handle.cc.o CMakeFiles/ost_mol.dir/entity_observer.cc.o CMakeFiles/ost_mol.dir/entity_property_mapper.cc.o CMakeFiles/ost_mol.dir/entity_view.cc.o CMakeFiles/ost_mol.dir/entity_visitor.cc.o CMakeFiles/ost_mol.dir/ics_editor.cc.o CMakeFiles/ost_mol.dir/not_connected_error.cc.o CMakeFiles/ost_mol.dir/property_id.cc.o CMakeFiles/ost_mol.dir/query.cc.o CMakeFiles/ost_mol.dir/query_error.cc.o CMakeFiles/ost_mol.dir/query_state.cc.o CMakeFiles/ost_mol.dir/residue_base.cc.o CMakeFiles/ost_mol.dir/residue_handle.cc.o CMakeFiles/ost_mol.dir/residue_view.cc.o CMakeFiles/ost_mol.dir/surface_builder.cc.o CMakeFiles/ost_mol.dir/surface_handle.cc.o CMakeFiles/ost_mol.dir/transfer_connectivity.cc.o CMakeFiles/ost_mol.dir/torsion_handle.cc.o CMakeFiles/ost_mol.dir/query_view_wrapper.cc.o CMakeFiles/ost_mol.dir/view_op.cc.o CMakeFiles/ost_mol.dir/coord_source.cc.o CMakeFiles/ost_mol.dir/in_mem_coord_source.cc.o CMakeFiles/ost_mol.dir/bounding_box.cc.o CMakeFiles/ost_mol.dir/xcs_editor.cc.o CMakeFiles/ost_mol.dir/impl/atom_impl.cc.o CMakeFiles/ost_mol.dir/impl/chain_impl.cc.o CMakeFiles/ost_mol.dir/impl/connector_impl.cc.o CMakeFiles/ost_mol.dir/impl/dihedral.cc.o CMakeFiles/ost_mol.dir/impl/entity_impl.cc.o CMakeFiles/ost_mol.dir/impl/fragment_impl.cc.o CMakeFiles/ost_mol.dir/impl/query_ast.cc.o CMakeFiles/ost_mol.dir/impl/query_impl.cc.o CMakeFiles/ost_mol.dir/impl/residue_impl.cc.o CMakeFiles/ost_mol.dir/impl/surface_impl.cc.o CMakeFiles/ost_mol.dir/impl/torsion_impl.cc.o CMakeFiles/ost_mol.dir/impl/atom_prop.cc.o -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib: ../../../../stage/lib/libost_info.so.2.9.2 ../../../../stage/lib/libost_base.so.2.9.2 ../../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_mol.so.2.9.2 ../../../../stage/lib/libost_mol.so.2.9 ../../../../stage/lib/libost_mol.so
[ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/smooth_mask_image.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/smooth_mask_image.cc.o -MF CMakeFiles/ost_img_alg.dir/smooth_mask_image.cc.o.d -o CMakeFiles/ost_img_alg.dir/smooth_mask_image.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/smooth_mask_image.cc
[ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/stat.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/stat.cc.o -MF CMakeFiles/ost_img_alg.dir/stat.cc.o.d -o CMakeFiles/ost_img_alg.dir/stat.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/stat.cc
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 21%] Built target ost_mol
[ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/stat_min_max.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/stat_min_max.cc.o -MF CMakeFiles/ost_img_alg.dir/stat_min_max.cc.o.d -o CMakeFiles/ost_img_alg.dir/stat_min_max.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/stat_min_max.cc
[ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/alg_transform.cc.o
@@ -18172,44 +18214,38 @@
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/rscrosscorr.cc.o -MF CMakeFiles/ost_img_alg.dir/rscrosscorr.cc.o.d -o CMakeFiles/ost_img_alg.dir/rscrosscorr.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/rscrosscorr.cc
[ 22%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/line_average.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/line_average.cc.o -MF CMakeFiles/ost_img_alg.dir/line_average.cc.o.d -o CMakeFiles/ost_img_alg.dir/line_average.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/line_average.cc
-[ 22%] Linking CXX shared library ../../../../stage/lib/libost_img_alg.so
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_img_alg.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/ost_img_alg.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_img_alg.so.2.9 -o ../../../../stage/lib/libost_img_alg.so.2.9.2 CMakeFiles/ost_img_alg.dir/anisotropic.cc.o CMakeFiles/ost_img_alg.dir/auto_correlate.cc.o CMakeFiles/ost_img_alg.dir/convolute.cc.o CMakeFiles/ost_img_alg.dir/correlate.cc.o CMakeFiles/ost_img_alg.dir/cross_correlate.cc.o CMakeFiles/ost_img_alg.dir/density_slice.cc.o CMakeFiles/ost_img_alg.dir/dft.cc.o CMakeFiles/ost_img_alg.dir/fft.cc.o CMakeFiles/ost_img_alg.dir/fourier_filters.cc.o CMakeFiles/ost_img_alg.dir/gaussian.cc.o CMakeFiles/ost_img_alg.dir/gaussian_gradient_magnitude.cc.o CMakeFiles/ost_img_alg.dir/gaussian_laplacian.cc.o CMakeFiles/ost_img_alg.dir/highest_peak_search_3d.cc.o CMakeFiles/ost_img_alg.dir/histogram.cc.o CMakeFiles/ost_img_alg.dir/line_iterator.cc.o CMakeFiles/ost_img_alg.dir/local_sigma_threshold.cc.o CMakeFiles/ost_img_alg.dir/mask_image.cc.o CMakeFiles/ost_img_alg.dir/normalizer.cc.o CMakeFiles/ost_img_alg.dir/normalizer_factory.cc.o CMakeFiles/ost_img_alg.dir/norm_linear.cc.o CMakeFiles/ost_img_alg.dir/norm_log.cc.o CMakeFiles/ost_img_alg.dir/norm_od.cc.o CMakeFiles/ost_img_alg.dir/power_spectrum.cc.o CMakeFiles/ost_img_alg.dir/randomize.cc.o CMakeFiles/ost_img_alg.dir/smooth_mask_image.cc.o CMakeFiles/ost_img_alg.dir/stat.cc.o CMakeFiles/ost_img_alg.dir/stat_min_max.cc.o CMakeFiles/ost_img_alg.dir/alg_transform.cc.o CMakeFiles/ost_img_alg.dir/alg_mirror.cc.o CMakeFiles/ost_img_alg.dir/alg_shift.cc.o CMakeFiles/ost_img_alg.dir/threshold.cc.o CMakeFiles/ost_img_alg.dir/discrete_shrink.cc.o CMakeFiles/ost_img_alg.dir/transformation_base.cc.o CMakeFiles/ost_img_alg.dir/transformations.cc.o CMakeFiles/ost_img_alg.dir/fractional_shift.cc.o CMakeFiles/ost_img_alg.dir/polar.cc.o CMakeFiles/ost_img_alg.dir/rscrosscorr.cc.o CMakeFiles/ost_img_alg.dir/line_average.cc.o -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib: /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_img.so.2.9.2 ../../../../stage/lib/libost_info.so.2.9.2 ../../../../stage/lib/libost_base.so.2.9.2 ../../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_img_alg.so.2.9.2 ../../../../stage/lib/libost_img_alg.so.2.9 ../../../../stage/lib/libost_img_alg.so
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 22%] Built target ost_img_alg
-[ 22%] Linking CXX shared library ../../../../stage/lib/libost_mol.so
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_mol.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/ost_mol.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_mol.so.2.9 -o ../../../../stage/lib/libost_mol.so.2.9.2 CMakeFiles/ost_mol.dir/atom_base.cc.o CMakeFiles/ost_mol.dir/atom_handle.cc.o CMakeFiles/ost_mol.dir/atom_view.cc.o CMakeFiles/ost_mol.dir/bond_handle.cc.o CMakeFiles/ost_mol.dir/chain_base.cc.o CMakeFiles/ost_mol.dir/chain_handle.cc.o CMakeFiles/ost_mol.dir/chain_view.cc.o CMakeFiles/ost_mol.dir/chain_type.cc.o CMakeFiles/ost_mol.dir/coord_frame.cc.o CMakeFiles/ost_mol.dir/coord_group.cc.o CMakeFiles/ost_mol.dir/editor_base.cc.o CMakeFiles/ost_mol.dir/entity_base.cc.o CMakeFiles/ost_mol.dir/entity_handle.cc.o CMakeFiles/ost_mol.dir/entity_observer.cc.o CMakeFiles/ost_mol.dir/entity_property_mapper.cc.o CMakeFiles/ost_mol.dir/entity_view.cc.o CMakeFiles/ost_mol.dir/entity_visitor.cc.o CMakeFiles/ost_mol.dir/ics_editor.cc.o CMakeFiles/ost_mol.dir/not_connected_error.cc.o CMakeFiles/ost_mol.dir/property_id.cc.o CMakeFiles/ost_mol.dir/query.cc.o CMakeFiles/ost_mol.dir/query_error.cc.o CMakeFiles/ost_mol.dir/query_state.cc.o CMakeFiles/ost_mol.dir/residue_base.cc.o CMakeFiles/ost_mol.dir/residue_handle.cc.o CMakeFiles/ost_mol.dir/residue_view.cc.o CMakeFiles/ost_mol.dir/surface_builder.cc.o CMakeFiles/ost_mol.dir/surface_handle.cc.o CMakeFiles/ost_mol.dir/transfer_connectivity.cc.o CMakeFiles/ost_mol.dir/torsion_handle.cc.o CMakeFiles/ost_mol.dir/query_view_wrapper.cc.o CMakeFiles/ost_mol.dir/view_op.cc.o CMakeFiles/ost_mol.dir/coord_source.cc.o CMakeFiles/ost_mol.dir/in_mem_coord_source.cc.o CMakeFiles/ost_mol.dir/bounding_box.cc.o CMakeFiles/ost_mol.dir/xcs_editor.cc.o CMakeFiles/ost_mol.dir/impl/atom_impl.cc.o CMakeFiles/ost_mol.dir/impl/chain_impl.cc.o CMakeFiles/ost_mol.dir/impl/connector_impl.cc.o CMakeFiles/ost_mol.dir/impl/dihedral.cc.o CMakeFiles/ost_mol.dir/impl/entity_impl.cc.o CMakeFiles/ost_mol.dir/impl/fragment_impl.cc.o CMakeFiles/ost_mol.dir/impl/query_ast.cc.o CMakeFiles/ost_mol.dir/impl/query_impl.cc.o CMakeFiles/ost_mol.dir/impl/residue_impl.cc.o CMakeFiles/ost_mol.dir/impl/surface_impl.cc.o CMakeFiles/ost_mol.dir/impl/torsion_impl.cc.o CMakeFiles/ost_mol.dir/impl/atom_prop.cc.o -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib: ../../../../stage/lib/libost_info.so.2.9.2 ../../../../stage/lib/libost_base.so.2.9.2 ../../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_mol.so.2.9.2 ../../../../stage/lib/libost_mol.so.2.9 ../../../../stage/lib/libost_mol.so
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 22%] Built target ost_mol
make -f modules/seq/base/src/CMakeFiles/ost_seq.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq.dir/depend
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cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq.dir/DependInfo.cmake "--color="
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make -f modules/seq/base/src/CMakeFiles/ost_seq.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq.dir/build
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-[ 24%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/impl/sequence_list_impl.cc.o
[ 24%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/impl/sequence_impl.cc.o
-[ 24%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_handle.cc.o
-[ 24%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/aligned_region.cc.o
-[ 24%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/aligned_column.cc.o
-[ 24%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_list.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/impl/sequence_impl.cc.o -MF CMakeFiles/ost_seq.dir/impl/sequence_impl.cc.o.d -o CMakeFiles/ost_seq.dir/impl/sequence_impl.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/impl/sequence_impl.cc
+[ 24%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/impl/sequence_list_impl.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/impl/sequence_list_impl.cc.o -MF CMakeFiles/ost_seq.dir/impl/sequence_list_impl.cc.o.d -o CMakeFiles/ost_seq.dir/impl/sequence_list_impl.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/impl/sequence_list_impl.cc
-[ 24%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/alignment_handle.cc.o
+[ 24%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_handle.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_handle.cc.o -MF CMakeFiles/ost_seq.dir/sequence_handle.cc.o.d -o CMakeFiles/ost_seq.dir/sequence_handle.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/sequence_handle.cc
+[ 24%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/aligned_region.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/aligned_region.cc.o -MF CMakeFiles/ost_seq.dir/aligned_region.cc.o.d -o CMakeFiles/ost_seq.dir/aligned_region.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/aligned_region.cc
+[ 24%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/aligned_column.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/aligned_column.cc.o -MF CMakeFiles/ost_seq.dir/aligned_column.cc.o.d -o CMakeFiles/ost_seq.dir/aligned_column.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/aligned_column.cc
+[ 24%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_list.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_list.cc.o -MF CMakeFiles/ost_seq.dir/sequence_list.cc.o.d -o CMakeFiles/ost_seq.dir/sequence_list.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/sequence_list.cc
+[ 24%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/alignment_handle.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/alignment_handle.cc.o -MF CMakeFiles/ost_seq.dir/alignment_handle.cc.o.d -o CMakeFiles/ost_seq.dir/alignment_handle.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/alignment_handle.cc
-[ 24%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/profile_handle.cc.o
[ 24%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_op.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/profile_handle.cc.o -MF CMakeFiles/ost_seq.dir/profile_handle.cc.o.d -o CMakeFiles/ost_seq.dir/profile_handle.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/profile_handle.cc
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_op.cc.o -MF CMakeFiles/ost_seq.dir/sequence_op.cc.o.d -o CMakeFiles/ost_seq.dir/sequence_op.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/sequence_op.cc
+[ 24%] Linking CXX shared library ../../../../stage/lib/libost_img_alg.so
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_img_alg.dir/link.txt --verbose=1
[ 24%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/views_from_sequences.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/views_from_sequences.cc.o -MF CMakeFiles/ost_seq.dir/views_from_sequences.cc.o.d -o CMakeFiles/ost_seq.dir/views_from_sequences.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/views_from_sequences.cc
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/ost_img_alg.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_img_alg.so.2.9 -o ../../../../stage/lib/libost_img_alg.so.2.9.2 CMakeFiles/ost_img_alg.dir/anisotropic.cc.o CMakeFiles/ost_img_alg.dir/auto_correlate.cc.o CMakeFiles/ost_img_alg.dir/convolute.cc.o CMakeFiles/ost_img_alg.dir/correlate.cc.o CMakeFiles/ost_img_alg.dir/cross_correlate.cc.o CMakeFiles/ost_img_alg.dir/density_slice.cc.o CMakeFiles/ost_img_alg.dir/dft.cc.o CMakeFiles/ost_img_alg.dir/fft.cc.o CMakeFiles/ost_img_alg.dir/fourier_filters.cc.o CMakeFiles/ost_img_alg.dir/gaussian.cc.o CMakeFiles/ost_img_alg.dir/gaussian_gradient_magnitude.cc.o CMakeFiles/ost_img_alg.dir/gaussian_laplacian.cc.o CMakeFiles/ost_img_alg.dir/highest_peak_search_3d.cc.o CMakeFiles/ost_img_alg.dir/histogram.cc.o CMakeFiles/ost_img_alg.dir/line_iterator.cc.o CMakeFiles/ost_img_alg.dir/local_sigma_threshold.cc.o CMakeFiles/ost_img_alg.dir/mask_image.cc.o CMakeFiles/ost_img_alg.dir/normalizer.cc.o CMakeFiles/ost_img_alg.dir/normalizer_factory.cc.o CMakeFiles/ost_img_alg.dir/norm_linear.cc.o CMakeFiles/ost_img_alg.dir/norm_log.cc.o CMakeFiles/ost_img_alg.dir/norm_od.cc.o CMakeFiles/ost_img_alg.dir/power_spectrum.cc.o CMakeFiles/ost_img_alg.dir/randomize.cc.o CMakeFiles/ost_img_alg.dir/smooth_mask_image.cc.o CMakeFiles/ost_img_alg.dir/stat.cc.o CMakeFiles/ost_img_alg.dir/stat_min_max.cc.o CMakeFiles/ost_img_alg.dir/alg_transform.cc.o CMakeFiles/ost_img_alg.dir/alg_mirror.cc.o CMakeFiles/ost_img_alg.dir/alg_shift.cc.o CMakeFiles/ost_img_alg.dir/threshold.cc.o CMakeFiles/ost_img_alg.dir/discrete_shrink.cc.o CMakeFiles/ost_img_alg.dir/transformation_base.cc.o CMakeFiles/ost_img_alg.dir/transformations.cc.o CMakeFiles/ost_img_alg.dir/fractional_shift.cc.o CMakeFiles/ost_img_alg.dir/polar.cc.o CMakeFiles/ost_img_alg.dir/rscrosscorr.cc.o CMakeFiles/ost_img_alg.dir/line_average.cc.o -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib: /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_img.so.2.9.2 ../../../../stage/lib/libost_info.so.2.9.2 ../../../../stage/lib/libost_base.so.2.9.2 ../../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_img_alg.so.2.9.2 ../../../../stage/lib/libost_img_alg.so.2.9 ../../../../stage/lib/libost_img_alg.so
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 24%] Built target ost_img_alg
+[ 24%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/profile_handle.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/profile_handle.cc.o -MF CMakeFiles/ost_seq.dir/profile_handle.cc.o.d -o CMakeFiles/ost_seq.dir/profile_handle.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/profile_handle.cc
[ 25%] Linking CXX shared library ../../../../stage/lib/libost_seq.so
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_seq.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/ost_seq.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_seq.so.2.9 -o ../../../../stage/lib/libost_seq.so.2.9.2 CMakeFiles/ost_seq.dir/impl/sequence_impl.cc.o CMakeFiles/ost_seq.dir/impl/sequence_list_impl.cc.o CMakeFiles/ost_seq.dir/sequence_handle.cc.o CMakeFiles/ost_seq.dir/aligned_region.cc.o CMakeFiles/ost_seq.dir/aligned_column.cc.o CMakeFiles/ost_seq.dir/sequence_list.cc.o CMakeFiles/ost_seq.dir/alignment_handle.cc.o CMakeFiles/ost_seq.dir/sequence_op.cc.o CMakeFiles/ost_seq.dir/views_from_sequences.cc.o CMakeFiles/ost_seq.dir/profile_handle.cc.o -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib: /usr/lib/i386-linux-gnu/libboost_iostreams.so.1.83.0 ../../../../stage/lib/libost_mol.so.2.9.2 ../../../../stage/lib/libost_info.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15 ../../../../stage/lib/libost_base.so.2.9.2 ../../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0
@@ -18218,68 +18254,42 @@
[ 25%] Built target ost_seq
make -f modules/bindings/src/CMakeFiles/ost_bindings.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings.dir/depend
make -f modules/db/src/CMakeFiles/ost_db.dir/build.make modules/db/src/CMakeFiles/ost_db.dir/depend
-make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/bindings/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings.dir/DependInfo.cmake "--color="
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make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/db/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/src/CMakeFiles/ost_db.dir/DependInfo.cmake "--color="
-make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make -f modules/bindings/src/CMakeFiles/ost_bindings.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings.dir/build
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/DependInfo.cmake "--color="
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make -f modules/db/src/CMakeFiles/ost_db.dir/build.make modules/db/src/CMakeFiles/ost_db.dir/build
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/conservation.cc.o
[ 25%] Building CXX object modules/bindings/src/CMakeFiles/ost_bindings.dir/wrap_tmalign.cc.o
-[ 25%] Building CXX object modules/db/src/CMakeFiles/ost_db.dir/sqlite_wrap.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/conservation.cc.o -MF CMakeFiles/ost_seq_alg.dir/conservation.cc.o.d -o CMakeFiles/ost_seq_alg.dir/conservation.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/conservation.cc
-[ 25%] Building CXX object modules/db/src/CMakeFiles/ost_db.dir/binary_container.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_BINDINGS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_bindings_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/bindings/src/CMakeFiles/ost_bindings.dir/wrap_tmalign.cc.o -MF CMakeFiles/ost_bindings.dir/wrap_tmalign.cc.o.d -o CMakeFiles/ost_bindings.dir/wrap_tmalign.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/bindings/src/wrap_tmalign.cc
+[ 25%] Building CXX object modules/db/src/CMakeFiles/ost_db.dir/sqlite_wrap.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_DB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -DSQLITE_OMIT_LOAD_EXTENSION -Dost_db_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/db/src/CMakeFiles/ost_db.dir/sqlite_wrap.cc.o -MF CMakeFiles/ost_db.dir/sqlite_wrap.cc.o.d -o CMakeFiles/ost_db.dir/sqlite_wrap.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/db/src/sqlite_wrap.cc
-[ 25%] Building CXX object modules/db/src/CMakeFiles/ost_db.dir/linear_indexer.cc.o
[ 25%] Building CXX object modules/db/src/CMakeFiles/ost_db.dir/extract_data_helper.cc.o
-[ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/clip_alignment.cc.o
-[ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/contact_weight_matrix.cc.o
+[ 25%] Building CXX object modules/db/src/CMakeFiles/ost_db.dir/binary_container.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_DB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -DSQLITE_OMIT_LOAD_EXTENSION -Dost_db_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/db/src/CMakeFiles/ost_db.dir/binary_container.cc.o -MF CMakeFiles/ost_db.dir/binary_container.cc.o.d -o CMakeFiles/ost_db.dir/binary_container.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/db/src/binary_container.cc
-[ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/contact_prediction_score.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/clip_alignment.cc.o -MF CMakeFiles/ost_seq_alg.dir/clip_alignment.cc.o.d -o CMakeFiles/ost_seq_alg.dir/clip_alignment.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/clip_alignment.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_DB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -DSQLITE_OMIT_LOAD_EXTENSION -Dost_db_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/db/src/CMakeFiles/ost_db.dir/linear_indexer.cc.o -MF CMakeFiles/ost_db.dir/linear_indexer.cc.o.d -o CMakeFiles/ost_db.dir/linear_indexer.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/db/src/linear_indexer.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/contact_weight_matrix.cc.o -MF CMakeFiles/ost_seq_alg.dir/contact_weight_matrix.cc.o.d -o CMakeFiles/ost_seq_alg.dir/contact_weight_matrix.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/contact_weight_matrix.cc
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_DB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -DSQLITE_OMIT_LOAD_EXTENSION -Dost_db_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/db/src/CMakeFiles/ost_db.dir/extract_data_helper.cc.o -MF CMakeFiles/ost_db.dir/extract_data_helper.cc.o.d -o CMakeFiles/ost_db.dir/extract_data_helper.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/db/src/extract_data_helper.cc
+[ 25%] Building CXX object modules/db/src/CMakeFiles/ost_db.dir/linear_indexer.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_DB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -DSQLITE_OMIT_LOAD_EXTENSION -Dost_db_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/db/src/CMakeFiles/ost_db.dir/linear_indexer.cc.o -MF CMakeFiles/ost_db.dir/linear_indexer.cc.o.d -o CMakeFiles/ost_db.dir/linear_indexer.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/db/src/linear_indexer.cc
+[ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/clip_alignment.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/clip_alignment.cc.o -MF CMakeFiles/ost_seq_alg.dir/clip_alignment.cc.o.d -o CMakeFiles/ost_seq_alg.dir/clip_alignment.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/clip_alignment.cc
+[ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/contact_prediction_score.cc.o
+[ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/conservation.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/conservation.cc.o -MF CMakeFiles/ost_seq_alg.dir/conservation.cc.o.d -o CMakeFiles/ost_seq_alg.dir/conservation.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/conservation.cc
+[ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/contact_weight_matrix.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/contact_prediction_score.cc.o -MF CMakeFiles/ost_seq_alg.dir/contact_prediction_score.cc.o.d -o CMakeFiles/ost_seq_alg.dir/contact_prediction_score.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/contact_prediction_score.cc
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/contact_weight_matrix.cc.o -MF CMakeFiles/ost_seq_alg.dir/contact_weight_matrix.cc.o.d -o CMakeFiles/ost_seq_alg.dir/contact_weight_matrix.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/contact_weight_matrix.cc
[ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/distance_map.cc.o
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-[ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/local_align.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/distance_map.cc.o -MF CMakeFiles/ost_seq_alg.dir/distance_map.cc.o.d -o CMakeFiles/ost_seq_alg.dir/distance_map.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/distance_map.cc
-[ 26%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/pair_subst_weight_matrix.cc.o
-[ 26%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/semiglobal_align.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/entropy.cc.o -MF CMakeFiles/ost_seq_alg.dir/entropy.cc.o.d -o CMakeFiles/ost_seq_alg.dir/entropy.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/entropy.cc
-[ 26%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/sequence_identity.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/global_align.cc.o -MF CMakeFiles/ost_seq_alg.dir/global_align.cc.o.d -o CMakeFiles/ost_seq_alg.dir/global_align.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/global_align.cc
-[ 26%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/sequence_similarity.cc.o
-[ 26%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/variance_map.cc.o
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-[ 26%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/subst_weight_matrix.cc.o
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-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/subst_weight_matrix.cc.o -MF CMakeFiles/ost_seq_alg.dir/subst_weight_matrix.cc.o.d -o CMakeFiles/ost_seq_alg.dir/subst_weight_matrix.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/subst_weight_matrix.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/sequence_identity.cc.o -MF CMakeFiles/ost_seq_alg.dir/sequence_identity.cc.o.d -o CMakeFiles/ost_seq_alg.dir/sequence_identity.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/sequence_identity.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/variance_map.cc.o -MF CMakeFiles/ost_seq_alg.dir/variance_map.cc.o.d -o CMakeFiles/ost_seq_alg.dir/variance_map.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/variance_map.cc
-[ 26%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/hmm_pseudo_counts.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/hmm_pseudo_counts.cc.o -MF CMakeFiles/ost_seq_alg.dir/hmm_pseudo_counts.cc.o.d -o CMakeFiles/ost_seq_alg.dir/hmm_pseudo_counts.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/hmm_pseudo_counts.cc
-[ 26%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/hmm_score.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/hmm_score.cc.o -MF CMakeFiles/ost_seq_alg.dir/hmm_score.cc.o.d -o CMakeFiles/ost_seq_alg.dir/hmm_score.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/hmm_score.cc
In file included from /build/reproducible-path/openstructure-2.9.2/modules/bindings/src/USalign/param_set.h:7,
from /build/reproducible-path/openstructure-2.9.2/modules/bindings/src/USalign/TMalign.h:6,
from /build/reproducible-path/openstructure-2.9.2/modules/bindings/src/wrap_tmalign.cc:20:
@@ -18323,6 +18333,8 @@
/build/reproducible-path/openstructure-2.9.2/modules/bindings/src/USalign/NW.h:287:9: warning: unused variable 'k' [-Wunused-variable]
287 | int k=0;
| ^
+[ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/entropy.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/entropy.cc.o -MF CMakeFiles/ost_seq_alg.dir/entropy.cc.o.d -o CMakeFiles/ost_seq_alg.dir/entropy.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/entropy.cc
In file included from /build/reproducible-path/openstructure-2.9.2/modules/bindings/src/USalign/TMalign.h:9:
/build/reproducible-path/openstructure-2.9.2/modules/bindings/src/USalign/NWalign.h: In function 'int NWalign_main(const char*, const char*, int, int, std::string&, std::string&, int, int*, int, int)':
/build/reproducible-path/openstructure-2.9.2/modules/bindings/src/USalign/NWalign.h:415:41: warning: array subscript has type 'char' [-Wchar-subscripts]
@@ -18375,8 +18387,6 @@
/build/reproducible-path/openstructure-2.9.2/modules/bindings/src/USalign/TMalign.h:1890:19: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
1890 | for (i=0;i<strlen(seqM);i++)
| ~^~~~~~~~~~~~~
-[ 26%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/wrap_parasail.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/wrap_parasail.cc.o -MF CMakeFiles/ost_seq_alg.dir/wrap_parasail.cc.o.d -o CMakeFiles/ost_seq_alg.dir/wrap_parasail.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/wrap_parasail.cc
/build/reproducible-path/openstructure-2.9.2/modules/bindings/src/USalign/TMalign.h:2162:28: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'unsigned int'} [-Wsign-compare]
2162 | if (!mm_opt) for (i=1;i<idx_vec.size();i++) buf<<"CONECT"
| ~^~~~~~~~~~~~~~~
@@ -18455,39 +18465,8 @@
/build/reproducible-path/openstructure-2.9.2/modules/bindings/src/USalign/MMalign.h:3030:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
3030 | for (i=0;i<xname_vec.size();i++)
| ~^~~~~~~~~~~~~~~~~
-/build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/sequence_identity.cc: In function 'Real ost::seq::alg::SequenceIdentity(const ost::seq::AlignmentHandle&, RefMode::Type, int, int)':
-/build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/sequence_identity.cc:33:17: warning: possibly dangling reference to a temporary [-Wdangling-reference]
- 33 | const String& sa=aln.GetSequence(seq_a).GetString();
- | ^~
-/build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/sequence_identity.cc:33:52: note: the temporary was destroyed at the end of the full expression 'ost::seq::AlignmentHandle::GetSequence(int) const(seq_a).ost::seq::ConstSequenceHandle::GetString()'
- 33 | const String& sa=aln.GetSequence(seq_a).GetString();
- | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
-/build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/sequence_identity.cc:34:17: warning: possibly dangling reference to a temporary [-Wdangling-reference]
- 34 | const String& sb=aln.GetSequence(seq_b).GetString();
- | ^~
-/build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/sequence_identity.cc:34:52: note: the temporary was destroyed at the end of the full expression 'ost::seq::AlignmentHandle::GetSequence(int) const(seq_b).ost::seq::ConstSequenceHandle::GetString()'
- 34 | const String& sb=aln.GetSequence(seq_b).GetString();
- | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
-/build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/sequence_similarity.cc: In function 'Real ost::seq::alg::SequenceSimilarity(const ost::seq::AlignmentHandle&, SubstWeightMatrixPtr, bool, int, int)':
-/build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/sequence_similarity.cc:31:17: warning: possibly dangling reference to a temporary [-Wdangling-reference]
- 31 | const String& sa=aln.GetSequence(seq_a).GetString();
- | ^~
-/build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/sequence_similarity.cc:31:52: note: the temporary was destroyed at the end of the full expression 'ost::seq::AlignmentHandle::GetSequence(int) const(seq_a).ost::seq::ConstSequenceHandle::GetString()'
- 31 | const String& sa=aln.GetSequence(seq_a).GetString();
- | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
-/build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/sequence_similarity.cc:32:17: warning: possibly dangling reference to a temporary [-Wdangling-reference]
- 32 | const String& sb=aln.GetSequence(seq_b).GetString();
- | ^~
-/build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/sequence_similarity.cc:32:52: note: the temporary was destroyed at the end of the full expression 'ost::seq::AlignmentHandle::GetSequence(int) const(seq_b).ost::seq::ConstSequenceHandle::GetString()'
- 32 | const String& sb=aln.GetSequence(seq_b).GetString();
- | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
-/build/reproducible-path/openstructure-2.9.2/modules/bindings/src/wrap_tmalign.cc: In function 'void ost::bindings::parse_chain_list_hacked(const std::vector<geom::Vec3List>&, const ost::seq::SequenceList&, const std::vector<bool>&, const std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::vector<std::vector<double> > >&, std::vector<std::vector<char> >&, std::vector<std::vector<char> >&, std::vector<int>&, std::vector<int>&, std::vector<std::__cxx11::basic_string<char> >&, int, int, std::string, int, std::string, int, int, int&, int&, int, std::vector<std::__cxx11::basic_string<char> >&)':
-/build/reproducible-path/openstructure-2.9.2/modules/bindings/src/wrap_tmalign.cc:263:24: warning: possibly dangling reference to a temporary [-Wdangling-reference]
- 263 | const std::string& s = seq[i].GetString();
- | ^
-/build/reproducible-path/openstructure-2.9.2/modules/bindings/src/wrap_tmalign.cc:263:44: note: the temporary was destroyed at the end of the full expression 'ost::seq::SequenceList::operator[](int) const(i).ost::seq::SequenceHandle::GetString()'
- 263 | const std::string& s = seq[i].GetString();
- | ~~~~~~~~~~~~~~~~^~
+[ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/global_align.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/global_align.cc.o -MF CMakeFiles/ost_seq_alg.dir/global_align.cc.o.d -o CMakeFiles/ost_seq_alg.dir/global_align.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/global_align.cc
In file included from /usr/include/c++/14/string:54,
from /usr/include/boost/assert/source_location.hpp:15,
from /usr/include/boost/exception/exception.hpp:9,
@@ -18587,50 +18566,113 @@
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
2107 | variant temp(rhs);
| ^~~~
-/build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/hmm_pseudo_counts.cc: In static member function 'static ost::seq::alg::ContextProfileDBPtr ost::seq::alg::ContextProfileDB::FromCRF(const String&)':
-/build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/hmm_pseudo_counts.cc:146:56: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations]
- 146 | if(boost::iequals(".gz", boost::filesystem::extension(filename))) {
- | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
-In file included from /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/hmm_pseudo_counts.cc:4:
-/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here
- 29 | inline std::string extension(const path& p)
- | ^~~~~~~~~
-[ 26%] Linking CXX shared library ../../../stage/lib/libost_db.so
+[ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/ins_del.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/ins_del.cc.o -MF CMakeFiles/ost_seq_alg.dir/ins_del.cc.o.d -o CMakeFiles/ost_seq_alg.dir/ins_del.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/ins_del.cc
+[ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/local_align.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/local_align.cc.o -MF CMakeFiles/ost_seq_alg.dir/local_align.cc.o.d -o CMakeFiles/ost_seq_alg.dir/local_align.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/local_align.cc
+/build/reproducible-path/openstructure-2.9.2/modules/bindings/src/wrap_tmalign.cc: In function 'void ost::bindings::parse_chain_list_hacked(const std::vector<geom::Vec3List>&, const ost::seq::SequenceList&, const std::vector<bool>&, const std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::vector<std::vector<double> > >&, std::vector<std::vector<char> >&, std::vector<std::vector<char> >&, std::vector<int>&, std::vector<int>&, std::vector<std::__cxx11::basic_string<char> >&, int, int, std::string, int, std::string, int, int, int&, int&, int, std::vector<std::__cxx11::basic_string<char> >&)':
+/build/reproducible-path/openstructure-2.9.2/modules/bindings/src/wrap_tmalign.cc:263:24: warning: possibly dangling reference to a temporary [-Wdangling-reference]
+ 263 | const std::string& s = seq[i].GetString();
+ | ^
+/build/reproducible-path/openstructure-2.9.2/modules/bindings/src/wrap_tmalign.cc:263:44: note: the temporary was destroyed at the end of the full expression 'ost::seq::SequenceList::operator[](int) const(i).ost::seq::SequenceHandle::GetString()'
+ 263 | const std::string& s = seq[i].GetString();
+ | ~~~~~~~~~~~~~~~~^~
+[ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/merge_pairwise_alignments.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/merge_pairwise_alignments.cc.o -MF CMakeFiles/ost_seq_alg.dir/merge_pairwise_alignments.cc.o.d -o CMakeFiles/ost_seq_alg.dir/merge_pairwise_alignments.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/merge_pairwise_alignments.cc
+[ 25%] Linking CXX shared library ../../../stage/lib/libost_db.so
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_db.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/ost_db.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_db.so.2.9 -o ../../../stage/lib/libost_db.so.2.9.2 CMakeFiles/ost_db.dir/sqlite_wrap.cc.o CMakeFiles/ost_db.dir/linear_indexer.cc.o CMakeFiles/ost_db.dir/binary_container.cc.o CMakeFiles/ost_db.dir/extract_data_helper.cc.o -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib: /usr/lib/i386-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_iostreams.so.1.83.0 ../../../stage/lib/libost_mol.so.2.9.2 ../../../stage/lib/libost_info.so.2.9.2 ../../../stage/lib/libost_base.so.2.9.2 ../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_db.so.2.9.2 ../../../stage/lib/libost_db.so.2.9 ../../../stage/lib/libost_db.so
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 26%] Built target ost_db
+[ 25%] Built target ost_db
+[ 26%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/pair_subst_weight_matrix.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/pair_subst_weight_matrix.cc.o -MF CMakeFiles/ost_seq_alg.dir/pair_subst_weight_matrix.cc.o.d -o CMakeFiles/ost_seq_alg.dir/pair_subst_weight_matrix.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/pair_subst_weight_matrix.cc
+[ 26%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/semiglobal_align.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/semiglobal_align.cc.o -MF CMakeFiles/ost_seq_alg.dir/semiglobal_align.cc.o.d -o CMakeFiles/ost_seq_alg.dir/semiglobal_align.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/semiglobal_align.cc
+[ 26%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/sequence_identity.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/sequence_identity.cc.o -MF CMakeFiles/ost_seq_alg.dir/sequence_identity.cc.o.d -o CMakeFiles/ost_seq_alg.dir/sequence_identity.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/sequence_identity.cc
+[ 26%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/sequence_similarity.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/sequence_similarity.cc.o -MF CMakeFiles/ost_seq_alg.dir/sequence_similarity.cc.o.d -o CMakeFiles/ost_seq_alg.dir/sequence_similarity.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/sequence_similarity.cc
+[ 26%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/subst_weight_matrix.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/subst_weight_matrix.cc.o -MF CMakeFiles/ost_seq_alg.dir/subst_weight_matrix.cc.o.d -o CMakeFiles/ost_seq_alg.dir/subst_weight_matrix.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/subst_weight_matrix.cc
+[ 26%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/variance_map.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/variance_map.cc.o -MF CMakeFiles/ost_seq_alg.dir/variance_map.cc.o.d -o CMakeFiles/ost_seq_alg.dir/variance_map.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/variance_map.cc
+[ 26%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/hmm_pseudo_counts.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/hmm_pseudo_counts.cc.o -MF CMakeFiles/ost_seq_alg.dir/hmm_pseudo_counts.cc.o.d -o CMakeFiles/ost_seq_alg.dir/hmm_pseudo_counts.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/hmm_pseudo_counts.cc
+[ 26%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/hmm_score.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/hmm_score.cc.o -MF CMakeFiles/ost_seq_alg.dir/hmm_score.cc.o.d -o CMakeFiles/ost_seq_alg.dir/hmm_score.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/hmm_score.cc
+[ 26%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/wrap_parasail.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/wrap_parasail.cc.o -MF CMakeFiles/ost_seq_alg.dir/wrap_parasail.cc.o.d -o CMakeFiles/ost_seq_alg.dir/wrap_parasail.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/wrap_parasail.cc
make -f modules/conop/src/CMakeFiles/ost_conop.dir/build.make modules/conop/src/CMakeFiles/ost_conop.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/conop/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src/CMakeFiles/ost_conop.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make -f modules/conop/src/CMakeFiles/ost_conop.dir/build.make modules/conop/src/CMakeFiles/ost_conop.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 26%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/processor.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/processor.cc.o -MF CMakeFiles/ost_conop.dir/processor.cc.o.d -o CMakeFiles/ost_conop.dir/processor.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/conop/src/processor.cc
+/build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/sequence_identity.cc: In function 'Real ost::seq::alg::SequenceIdentity(const ost::seq::AlignmentHandle&, RefMode::Type, int, int)':
+/build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/sequence_identity.cc:33:17: warning: possibly dangling reference to a temporary [-Wdangling-reference]
+ 33 | const String& sa=aln.GetSequence(seq_a).GetString();
+ | ^~
+/build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/sequence_identity.cc:33:52: note: the temporary was destroyed at the end of the full expression 'ost::seq::AlignmentHandle::GetSequence(int) const(seq_a).ost::seq::ConstSequenceHandle::GetString()'
+ 33 | const String& sa=aln.GetSequence(seq_a).GetString();
+ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
+/build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/sequence_identity.cc:34:17: warning: possibly dangling reference to a temporary [-Wdangling-reference]
+ 34 | const String& sb=aln.GetSequence(seq_b).GetString();
+ | ^~
+/build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/sequence_identity.cc:34:52: note: the temporary was destroyed at the end of the full expression 'ost::seq::AlignmentHandle::GetSequence(int) const(seq_b).ost::seq::ConstSequenceHandle::GetString()'
+ 34 | const String& sb=aln.GetSequence(seq_b).GetString();
+ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
+/build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/sequence_similarity.cc: In function 'Real ost::seq::alg::SequenceSimilarity(const ost::seq::AlignmentHandle&, SubstWeightMatrixPtr, bool, int, int)':
+/build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/sequence_similarity.cc:31:17: warning: possibly dangling reference to a temporary [-Wdangling-reference]
+ 31 | const String& sa=aln.GetSequence(seq_a).GetString();
+ | ^~
+/build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/sequence_similarity.cc:31:52: note: the temporary was destroyed at the end of the full expression 'ost::seq::AlignmentHandle::GetSequence(int) const(seq_a).ost::seq::ConstSequenceHandle::GetString()'
+ 31 | const String& sa=aln.GetSequence(seq_a).GetString();
+ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
+/build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/sequence_similarity.cc:32:17: warning: possibly dangling reference to a temporary [-Wdangling-reference]
+ 32 | const String& sb=aln.GetSequence(seq_b).GetString();
+ | ^~
+/build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/sequence_similarity.cc:32:52: note: the temporary was destroyed at the end of the full expression 'ost::seq::AlignmentHandle::GetSequence(int) const(seq_b).ost::seq::ConstSequenceHandle::GetString()'
+ 32 | const String& sb=aln.GetSequence(seq_b).GetString();
+ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
+[ 26%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/amino_acids.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/amino_acids.cc.o -MF CMakeFiles/ost_conop.dir/amino_acids.cc.o.d -o CMakeFiles/ost_conop.dir/amino_acids.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/conop/src/amino_acids.cc
[ 26%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/conop.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/conop.cc.o -MF CMakeFiles/ost_conop.dir/conop.cc.o.d -o CMakeFiles/ost_conop.dir/conop.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/conop/src/conop.cc
-[ 26%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/amino_acids.cc.o
-[ 26%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/processor.cc.o
[ 26%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/minimal_compound_lib.cc.o
-[ 26%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/compound_lib_base.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/amino_acids.cc.o -MF CMakeFiles/ost_conop.dir/amino_acids.cc.o.d -o CMakeFiles/ost_conop.dir/amino_acids.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/conop/src/amino_acids.cc
-[ 26%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/heuristic.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/processor.cc.o -MF CMakeFiles/ost_conop.dir/processor.cc.o.d -o CMakeFiles/ost_conop.dir/processor.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/conop/src/processor.cc
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/minimal_compound_lib.cc.o -MF CMakeFiles/ost_conop.dir/minimal_compound_lib.cc.o.d -o CMakeFiles/ost_conop.dir/minimal_compound_lib.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/conop/src/minimal_compound_lib.cc
+/build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/hmm_pseudo_counts.cc: In static member function 'static ost::seq::alg::ContextProfileDBPtr ost::seq::alg::ContextProfileDB::FromCRF(const String&)':
+/build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/hmm_pseudo_counts.cc:146:56: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations]
+ 146 | if(boost::iequals(".gz", boost::filesystem::extension(filename))) {
+ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
+In file included from /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/hmm_pseudo_counts.cc:4:
+/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here
+ 29 | inline std::string extension(const path& p)
+ | ^~~~~~~~~
+[ 26%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/compound_lib_base.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/compound_lib_base.cc.o -MF CMakeFiles/ost_conop.dir/compound_lib_base.cc.o.d -o CMakeFiles/ost_conop.dir/compound_lib_base.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/conop/src/compound_lib_base.cc
-[ 27%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/diag.cc.o
+[ 26%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/heuristic.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/heuristic.cc.o -MF CMakeFiles/ost_conop.dir/heuristic.cc.o.d -o CMakeFiles/ost_conop.dir/heuristic.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/conop/src/heuristic.cc
-[ 27%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/rule_based.cc.o
-[ 27%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/compound.cc.o
-[ 27%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/model_check.cc.o
+[ 27%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/diag.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/diag.cc.o -MF CMakeFiles/ost_conop.dir/diag.cc.o.d -o CMakeFiles/ost_conop.dir/diag.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/conop/src/diag.cc
-[ 27%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/ring_finder.cc.o
+[ 27%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/rule_based.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/rule_based.cc.o -MF CMakeFiles/ost_conop.dir/rule_based.cc.o.d -o CMakeFiles/ost_conop.dir/rule_based.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/conop/src/rule_based.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/compound.cc.o -MF CMakeFiles/ost_conop.dir/compound.cc.o.d -o CMakeFiles/ost_conop.dir/compound.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/conop/src/compound.cc
+[ 27%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/model_check.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/model_check.cc.o -MF CMakeFiles/ost_conop.dir/model_check.cc.o.d -o CMakeFiles/ost_conop.dir/model_check.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/conop/src/model_check.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/ring_finder.cc.o -MF CMakeFiles/ost_conop.dir/ring_finder.cc.o.d -o CMakeFiles/ost_conop.dir/ring_finder.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/conop/src/ring_finder.cc
+[ 27%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/compound.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/compound.cc.o -MF CMakeFiles/ost_conop.dir/compound.cc.o.d -o CMakeFiles/ost_conop.dir/compound.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/conop/src/compound.cc
[ 27%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/compound_lib.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/compound_lib.cc.o -MF CMakeFiles/ost_conop.dir/compound_lib.cc.o.d -o CMakeFiles/ost_conop.dir/compound_lib.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/conop/src/compound_lib.cc
+[ 27%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/ring_finder.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/ring_finder.cc.o -MF CMakeFiles/ost_conop.dir/ring_finder.cc.o.d -o CMakeFiles/ost_conop.dir/ring_finder.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/conop/src/ring_finder.cc
+[ 27%] Linking CXX shared library ../../../../stage/lib/libost_seq_alg.so
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_seq_alg.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/ost_seq_alg.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_seq_alg.so.2.9 -o ../../../../stage/lib/libost_seq_alg.so.2.9.2 CMakeFiles/ost_seq_alg.dir/clip_alignment.cc.o CMakeFiles/ost_seq_alg.dir/conservation.cc.o CMakeFiles/ost_seq_alg.dir/contact_prediction_score.cc.o CMakeFiles/ost_seq_alg.dir/contact_weight_matrix.cc.o CMakeFiles/ost_seq_alg.dir/distance_map.cc.o CMakeFiles/ost_seq_alg.dir/entropy.cc.o CMakeFiles/ost_seq_alg.dir/global_align.cc.o CMakeFiles/ost_seq_alg.dir/ins_del.cc.o CMakeFiles/ost_seq_alg.dir/local_align.cc.o CMakeFiles/ost_seq_alg.dir/merge_pairwise_alignments.cc.o CMakeFiles/ost_seq_alg.dir/pair_subst_weight_matrix.cc.o CMakeFiles/ost_seq_alg.dir/semiglobal_align.cc.o CMakeFiles/ost_seq_alg.dir/sequence_identity.cc.o CMakeFiles/ost_seq_alg.dir/sequence_similarity.cc.o CMakeFiles/ost_seq_alg.dir/subst_weight_matrix.cc.o CMakeFiles/ost_seq_alg.dir/variance_map.cc.o CMakeFiles/ost_seq_alg.dir/hmm_pseudo_counts.cc.o CMakeFiles/ost_seq_alg.dir/hmm_score.cc.o CMakeFiles/ost_seq_alg.dir/wrap_parasail.cc.o -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib: ../../../../stage/lib/libost_seq.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_iostreams.so.1.83.0 ../../../../stage/lib/libost_mol.so.2.9.2 ../../../../stage/lib/libost_info.so.2.9.2 ../../../../stage/lib/libost_base.so.2.9.2 ../../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_seq_alg.so.2.9.2 ../../../../stage/lib/libost_seq_alg.so.2.9 ../../../../stage/lib/libost_seq_alg.so
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 27%] Built target ost_seq_alg
In file included from /usr/include/c++/14/string:54,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
@@ -18809,21 +18851,6 @@
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
2107 | variant temp(rhs);
| ^~~~
-[ 27%] Linking CXX shared library ../../../../stage/lib/libost_seq_alg.so
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_seq_alg.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/ost_seq_alg.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_seq_alg.so.2.9 -o ../../../../stage/lib/libost_seq_alg.so.2.9.2 CMakeFiles/ost_seq_alg.dir/clip_alignment.cc.o CMakeFiles/ost_seq_alg.dir/conservation.cc.o CMakeFiles/ost_seq_alg.dir/contact_prediction_score.cc.o CMakeFiles/ost_seq_alg.dir/contact_weight_matrix.cc.o CMakeFiles/ost_seq_alg.dir/distance_map.cc.o CMakeFiles/ost_seq_alg.dir/entropy.cc.o CMakeFiles/ost_seq_alg.dir/global_align.cc.o CMakeFiles/ost_seq_alg.dir/ins_del.cc.o CMakeFiles/ost_seq_alg.dir/local_align.cc.o CMakeFiles/ost_seq_alg.dir/merge_pairwise_alignments.cc.o CMakeFiles/ost_seq_alg.dir/pair_subst_weight_matrix.cc.o CMakeFiles/ost_seq_alg.dir/semiglobal_align.cc.o CMakeFiles/ost_seq_alg.dir/sequence_identity.cc.o CMakeFiles/ost_seq_alg.dir/sequence_similarity.cc.o CMakeFiles/ost_seq_alg.dir/subst_weight_matrix.cc.o CMakeFiles/ost_seq_alg.dir/variance_map.cc.o CMakeFiles/ost_seq_alg.dir/hmm_pseudo_counts.cc.o CMakeFiles/ost_seq_alg.dir/hmm_score.cc.o CMakeFiles/ost_seq_alg.dir/wrap_parasail.cc.o -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib: ../../../../stage/lib/libost_seq.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_iostreams.so.1.83.0 ../../../../stage/lib/libost_mol.so.2.9.2 ../../../../stage/lib/libost_info.so.2.9.2 ../../../../stage/lib/libost_base.so.2.9.2 ../../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_seq_alg.so.2.9.2 ../../../../stage/lib/libost_seq_alg.so.2.9 ../../../../stage/lib/libost_seq_alg.so
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 27%] Built target ost_seq_alg
-[ 27%] Linking CXX shared module ../../../stage/lib/python3.13/dist-packages/ost/_ost_base.so
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_base.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_ost_base.dir/link.d -Wl,-z,relro -shared -o ../../../stage/lib/python3.13/dist-packages/ost/_ost_base.so CMakeFiles/_ost_base.dir/wrap_base.cc.o CMakeFiles/_ost_base.dir/export_logger.cc.o CMakeFiles/_ost_base.dir/export_range.cc.o CMakeFiles/_ost_base.dir/export_units.cc.o -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib: ../../../stage/lib/libost_base.so.2.9.2 /usr/lib/i386-linux-gnu/libpython3.13.so /usr/lib/i386-linux-gnu/libboost_python313.so.1.83.0 ../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/base/pymod/settings.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/./settings.pyc\",\"settings.py\",doraise=True)"
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/base/pymod/stutil.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/./stutil.pyc\",\"stutil.py\",doraise=True)"
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/base/pymod/table.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/./table.pyc\",\"table.py\",doraise=True)"
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/base/pymod/table_selector.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/./table_selector.pyc\",\"table_selector.py\",doraise=True)"
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/base/pymod/xmlrunner.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/./xmlrunner.pyc\",\"xmlrunner.py\",doraise=True)"
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/base/pymod/testutils.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/./testutils.pyc\",\"testutils.py\",doraise=True)"
/build/reproducible-path/openstructure-2.9.2/modules/bindings/src/USalign/NWalign.h: In function 'int extract_aln_from_resi(std::vector<std::__cxx11::basic_string<char> >&, char*, char*, std::vector<std::__cxx11::basic_string<char> >, std::vector<std::__cxx11::basic_string<char> >, std::vector<int>, std::vector<int>, int, int, int)':
/build/reproducible-path/openstructure-2.9.2/modules/bindings/src/USalign/NWalign.h:686:21: warning: 'invmap' may be used uninitialized [-Wmaybe-uninitialized]
686 | NWalign_main(seqx, seqy, xlen, ylen, sequence[0],sequence[1],
@@ -18833,16 +18860,6 @@
/build/reproducible-path/openstructure-2.9.2/modules/bindings/src/USalign/NWalign.h:676:14: note: 'invmap' was declared here
676 | int *invmap;
| ^~~~~~
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 27%] Built target _ost_base
-make -f modules/info/pymod/CMakeFiles/_ost_info.dir/build.make modules/info/pymod/CMakeFiles/_ost_info.dir/depend
-make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/info/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/pymod/CMakeFiles/_ost_info.dir/DependInfo.cmake "--color="
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/info/pymod/CMakeFiles/_ost_info.dir/build.make modules/info/pymod/CMakeFiles/_ost_info.dir/build
-make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 27%] Building CXX object modules/info/pymod/CMakeFiles/_ost_info.dir/wrap_info.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_info_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/pymod/CMakeFiles/_ost_info.dir/wrap_info.cc.o -MF CMakeFiles/_ost_info.dir/wrap_info.cc.o.d -o CMakeFiles/_ost_info.dir/wrap_info.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/info/pymod/wrap_info.cc
/build/reproducible-path/openstructure-2.9.2/modules/bindings/src/USalign/NWalign.h: In function 'int extract_aln_from_resi(std::vector<std::__cxx11::basic_string<char> >&, char*, char*, std::vector<std::__cxx11::basic_string<char> >, std::vector<std::__cxx11::basic_string<char> >, int)':
/build/reproducible-path/openstructure-2.9.2/modules/bindings/src/USalign/NWalign.h:545:21: warning: 'invmap' may be used uninitialized [-Wmaybe-uninitialized]
545 | NWalign_main(seqx, seqy, xlen, ylen, sequence[0],sequence[1],
@@ -18870,146 +18887,50 @@
make -f modules/gfx/src/CMakeFiles/ost_gfx.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 27%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/distance_rmsd_test.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/distance_rmsd_test.cc.o -MF CMakeFiles/ost_mol_alg.dir/distance_rmsd_test.cc.o.d -o CMakeFiles/ost_mol_alg.dir/distance_rmsd_test.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/distance_rmsd_test.cc
+[ 27%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/collada_exporter.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/collada_exporter.cc.o -MF CMakeFiles/ost_gfx.dir/collada_exporter.cc.o.d -o CMakeFiles/ost_gfx.dir/collada_exporter.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/collada_exporter.cc
[ 27%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/svd_superpose.cc.o
-[ 27%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/clash_score.cc.o
-[ 27%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/sec_structure_segments.cc.o
-[ 27%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/local_dist_diff_test.cc.o
-[ 27%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/distance_test_common.cc.o
-[ 27%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/superpose_frames.cc.o
-[ 27%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/filter_clashes.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/svd_superpose.cc.o -MF CMakeFiles/ost_mol_alg.dir/svd_superpose.cc.o.d -o CMakeFiles/ost_mol_alg.dir/svd_superpose.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/svd_superpose.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/clash_score.cc.o -MF CMakeFiles/ost_mol_alg.dir/clash_score.cc.o.d -o CMakeFiles/ost_mol_alg.dir/clash_score.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/clash_score.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/local_dist_diff_test.cc.o -MF CMakeFiles/ost_mol_alg.dir/local_dist_diff_test.cc.o.d -o CMakeFiles/ost_mol_alg.dir/local_dist_diff_test.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/local_dist_diff_test.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/superpose_frames.cc.o -MF CMakeFiles/ost_mol_alg.dir/superpose_frames.cc.o.d -o CMakeFiles/ost_mol_alg.dir/superpose_frames.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/superpose_frames.cc
-[ 29%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/construct_cbeta.cc.o
-[ 29%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/trajectory_analysis.cc.o
-[ 29%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/consistency_checks.cc.o
+[ 29%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/bitmap_io.cc.o
[ 29%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/exporter.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/distance_test_common.cc.o -MF CMakeFiles/ost_mol_alg.dir/distance_test_common.cc.o.d -o CMakeFiles/ost_mol_alg.dir/distance_test_common.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/distance_test_common.cc
-[ 29%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/structure_analysis.cc.o
-[ 30%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/bitmap_io.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/sec_structure_segments.cc.o -MF CMakeFiles/ost_mol_alg.dir/sec_structure_segments.cc.o.d -o CMakeFiles/ost_mol_alg.dir/sec_structure_segments.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/sec_structure_segments.cc
-[ 30%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/collada_exporter.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/filter_clashes.cc.o -MF CMakeFiles/ost_mol_alg.dir/filter_clashes.cc.o.d -o CMakeFiles/ost_mol_alg.dir/filter_clashes.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/filter_clashes.cc
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/exporter.cc.o -MF CMakeFiles/ost_gfx.dir/exporter.cc.o.d -o CMakeFiles/ost_gfx.dir/exporter.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/exporter.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/construct_cbeta.cc.o -MF CMakeFiles/ost_mol_alg.dir/construct_cbeta.cc.o.d -o CMakeFiles/ost_mol_alg.dir/construct_cbeta.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/construct_cbeta.cc
-[ 30%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/pdbize.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/trajectory_analysis.cc.o -MF CMakeFiles/ost_mol_alg.dir/trajectory_analysis.cc.o.d -o CMakeFiles/ost_mol_alg.dir/trajectory_analysis.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/trajectory_analysis.cc
-[ 30%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color.cc.o
-[ 30%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/primitives.cc.o
+[ 29%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/clash_score.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/clash_score.cc.o -MF CMakeFiles/ost_mol_alg.dir/clash_score.cc.o.d -o CMakeFiles/ost_mol_alg.dir/clash_score.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/clash_score.cc
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/bitmap_io.cc.o -MF CMakeFiles/ost_gfx.dir/bitmap_io.cc.o.d -o CMakeFiles/ost_gfx.dir/bitmap_io.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/bitmap_io.cc
-[ 30%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/adjacency_bitmap.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/structure_analysis.cc.o -MF CMakeFiles/ost_mol_alg.dir/structure_analysis.cc.o.d -o CMakeFiles/ost_mol_alg.dir/structure_analysis.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/structure_analysis.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/collada_exporter.cc.o -MF CMakeFiles/ost_gfx.dir/collada_exporter.cc.o.d -o CMakeFiles/ost_gfx.dir/collada_exporter.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/collada_exporter.cc
-[ 30%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/contact_overlap.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/primitives.cc.o -MF CMakeFiles/ost_gfx.dir/primitives.cc.o.d -o CMakeFiles/ost_gfx.dir/primitives.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/primitives.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/consistency_checks.cc.o -MF CMakeFiles/ost_mol_alg.dir/consistency_checks.cc.o.d -o CMakeFiles/ost_mol_alg.dir/consistency_checks.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/consistency_checks.cc
+[ 29%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/sec_structure_segments.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/sec_structure_segments.cc.o -MF CMakeFiles/ost_mol_alg.dir/sec_structure_segments.cc.o.d -o CMakeFiles/ost_mol_alg.dir/sec_structure_segments.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/sec_structure_segments.cc
+[ 29%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color.cc.o
+[ 29%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/local_dist_diff_test.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/local_dist_diff_test.cc.o -MF CMakeFiles/ost_mol_alg.dir/local_dist_diff_test.cc.o.d -o CMakeFiles/ost_mol_alg.dir/local_dist_diff_test.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/local_dist_diff_test.cc
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color.cc.o -MF CMakeFiles/ost_gfx.dir/color.cc.o.d -o CMakeFiles/ost_gfx.dir/color.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/pdbize.cc.o -MF CMakeFiles/ost_mol_alg.dir/pdbize.cc.o.d -o CMakeFiles/ost_mol_alg.dir/pdbize.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/pdbize.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/adjacency_bitmap.cc.o -MF CMakeFiles/ost_mol_alg.dir/adjacency_bitmap.cc.o.d -o CMakeFiles/ost_mol_alg.dir/adjacency_bitmap.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/adjacency_bitmap.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/contact_overlap.cc.o -MF CMakeFiles/ost_mol_alg.dir/contact_overlap.cc.o.d -o CMakeFiles/ost_mol_alg.dir/contact_overlap.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/contact_overlap.cc
-In file included from /usr/include/i386-linux-gnu/c++/14/bits/c++allocator.h:33,
- from /usr/include/c++/14/bits/allocator.h:46,
- from /usr/include/c++/14/string:43,
- from /usr/include/c++/14/bits/locale_classes.h:40,
- from /usr/include/c++/14/bits/ios_base.h:41,
- from /usr/include/c++/14/ios:44,
- from /usr/include/c++/14/istream:40,
- from /usr/include/c++/14/sstream:40,
- from /build/reproducible-path/openstructure-2.9.2/modules/bindings/src/USalign/basic_fun.h:12:
-In member function 'void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = std::pair<double, int>; _Args = {std::pair<double, int>}; _Tp = std::pair<double, int>]',
- inlined from 'static void std::allocator_traits<std::allocator<_CharT> >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = std::pair<double, int>; _Args = {std::pair<double, int>}; _Tp = std::pair<double, int>]' at /usr/include/c++/14/bits/alloc_traits.h:575:17,
- inlined from 'void std::vector<_Tp, _Alloc>::_M_realloc_append(_Args&& ...) [with _Args = {std::pair<double, int>}; _Tp = std::pair<double, int>; _Alloc = std::allocator<std::pair<double, int> >]' at /usr/include/c++/14/bits/vector.tcc:634:26,
- inlined from 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<double, int>}; _Tp = std::pair<double, int>; _Alloc = std::allocator<std::pair<double, int> >]' at /usr/include/c++/14/bits/vector.tcc:123:21,
- inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair<double, int>; _Alloc = std::allocator<std::pair<double, int> >]' at /usr/include/c++/14/bits/stl_vector.h:1301:21,
- inlined from 'int trimComplex(std::vector<std::vector<std::vector<double> > >&, std::vector<std::vector<char> >&, std::vector<std::vector<char> >&, std::vector<int>&, const std::vector<std::vector<std::vector<double> > >&, const std::vector<std::vector<char> >&, const std::vector<std::vector<char> >&, const std::vector<int>&, const std::vector<int>&, int, int)' at /build/reproducible-path/openstructure-2.9.2/modules/bindings/src/USalign/MMalign.h:2955:33:
-/usr/include/c++/14/bits/new_allocator.h:191:11: warning: 'dinter' may be used uninitialized [-Wmaybe-uninitialized]
- 191 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); }
- | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/openstructure-2.9.2/modules/bindings/src/USalign/MMalign.h: In function 'int trimComplex(std::vector<std::vector<std::vector<double> > >&, std::vector<std::vector<char> >&, std::vector<std::vector<char> >&, std::vector<int>&, const std::vector<std::vector<std::vector<double> > >&, const std::vector<std::vector<char> >&, const std::vector<std::vector<char> >&, const std::vector<int>&, const std::vector<int>&, int, int)':
-/build/reproducible-path/openstructure-2.9.2/modules/bindings/src/USalign/MMalign.h:2908:12: note: 'dinter' was declared here
- 2908 | double dinter;
- | ^~~~~~
-[ 30%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/entity.cc.o
+[ 29%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/primitives.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/primitives.cc.o -MF CMakeFiles/ost_gfx.dir/primitives.cc.o.d -o CMakeFiles/ost_gfx.dir/primitives.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/primitives.cc
+[ 29%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/entity.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/entity.cc.o -MF CMakeFiles/ost_gfx.dir/entity.cc.o.d -o CMakeFiles/ost_gfx.dir/entity.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/entity.cc
-[ 30%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/symmetry_node.cc.o
+[ 29%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/distance_test_common.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/distance_test_common.cc.o -MF CMakeFiles/ost_mol_alg.dir/distance_test_common.cc.o.d -o CMakeFiles/ost_mol_alg.dir/distance_test_common.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/distance_test_common.cc
+[ 29%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/distance_rmsd_test.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/distance_rmsd_test.cc.o -MF CMakeFiles/ost_mol_alg.dir/distance_rmsd_test.cc.o.d -o CMakeFiles/ost_mol_alg.dir/distance_rmsd_test.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/distance_rmsd_test.cc
+[ 29%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/symmetry_node.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/symmetry_node.cc.o -MF CMakeFiles/ost_gfx.dir/symmetry_node.cc.o.d -o CMakeFiles/ost_gfx.dir/symmetry_node.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/symmetry_node.cc
-[ 30%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_node.cc.o
+In file included from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38,
+ from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/trace_renderer_base.hh:27,
+ from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/cartoon_renderer.hh:31,
+ from /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/entity.cc:39:
+/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/gfx_object.hh:62:16: warning: 'virtual void ost::gfx::GfxObj::Apply(ost::gfx::GfxNodeVisitor&, ost::gfx::GfxNodeVisitor::Stack)' was hidden [-Woverloaded-virtual=]
+ 62 | virtual void Apply(GfxNodeVisitor& v, GfxNodeVisitor::Stack st);
+ | ^~~~~
+In file included from /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/entity.cc:52:
+/build/reproducible-path/openstructure-2.9.2/modules/gfx/src/entity.hh:294:8: note: by 'ost::gfx::Entity::Apply'
+ 294 | void Apply(const gfx::MapHandleColorOp& op, bool store=true);
+ | ^~~~~
+[ 29%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_node.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_node.cc.o -MF CMakeFiles/ost_gfx.dir/gfx_node.cc.o.d -o CMakeFiles/ost_gfx.dir/gfx_node.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/gfx_node.cc
-/build/reproducible-path/openstructure-2.9.2/modules/bindings/src/wrap_tmalign.cc: In function 'ost::bindings::MMAlignResult ost::bindings::WrappedMMAlign(const std::vector<geom::Vec3List>&, const std::vector<geom::Vec3List>&, const ost::seq::SequenceList&, const ost::seq::SequenceList&, const std::vector<bool>&, const std::vector<bool>&, bool, const std::map<int, int>&)':
-/build/reproducible-path/openstructure-2.9.2/modules/bindings/src/wrap_tmalign.cc:904:36: warning: 'seqx' may be used uninitialized [-Wmaybe-uninitialized]
- 904 | if (byresi_opt==0) MMalign_iter(max_total_score, max_iter, xa_vec, ya_vec,
- | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 905 | seqx_vec, seqy_vec, secx_vec, secy_vec, mol_vec1, mol_vec2, xlen_vec,
- | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 906 | ylen_vec, xa, ya, seqx, seqy, secx, secy, len_aa, len_na, chain1_num,
- | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 907 | chain2_num, TMave_mat, seqxA_mat, seqyA_mat, assign1_list, assign2_list,
- | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 908 | sequence, d0_scale, fast_opt, chainmap);
- | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/openstructure-2.9.2/modules/bindings/src/wrap_tmalign.cc:551:11: note: 'seqx' was declared here
- 551 | char *seqx, *seqy; // for the protein sequence
- | ^~~~
-/build/reproducible-path/openstructure-2.9.2/modules/bindings/src/wrap_tmalign.cc:904:36: warning: 'secx' may be used uninitialized [-Wmaybe-uninitialized]
- 904 | if (byresi_opt==0) MMalign_iter(max_total_score, max_iter, xa_vec, ya_vec,
- | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 905 | seqx_vec, seqy_vec, secx_vec, secy_vec, mol_vec1, mol_vec2, xlen_vec,
- | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 906 | ylen_vec, xa, ya, seqx, seqy, secx, secy, len_aa, len_na, chain1_num,
- | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 907 | chain2_num, TMave_mat, seqxA_mat, seqyA_mat, assign1_list, assign2_list,
- | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 908 | sequence, d0_scale, fast_opt, chainmap);
- | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/openstructure-2.9.2/modules/bindings/src/wrap_tmalign.cc:552:11: note: 'secx' was declared here
- 552 | char *secx, *secy; // for the secondary structure
- | ^~~~
-/build/reproducible-path/openstructure-2.9.2/modules/bindings/src/wrap_tmalign.cc:904:36: warning: 'secy' may be used uninitialized [-Wmaybe-uninitialized]
- 904 | if (byresi_opt==0) MMalign_iter(max_total_score, max_iter, xa_vec, ya_vec,
- | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 905 | seqx_vec, seqy_vec, secx_vec, secy_vec, mol_vec1, mol_vec2, xlen_vec,
- | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 906 | ylen_vec, xa, ya, seqx, seqy, secx, secy, len_aa, len_na, chain1_num,
- | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 907 | chain2_num, TMave_mat, seqxA_mat, seqyA_mat, assign1_list, assign2_list,
- | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 908 | sequence, d0_scale, fast_opt, chainmap);
- | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/openstructure-2.9.2/modules/bindings/src/wrap_tmalign.cc:552:18: note: 'secy' was declared here
- 552 | char *secx, *secy; // for the secondary structure
- | ^~~~
-/build/reproducible-path/openstructure-2.9.2/modules/bindings/src/wrap_tmalign.cc:904:36: warning: 'seqy' may be used uninitialized [-Wmaybe-uninitialized]
- 904 | if (byresi_opt==0) MMalign_iter(max_total_score, max_iter, xa_vec, ya_vec,
- | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 905 | seqx_vec, seqy_vec, secx_vec, secy_vec, mol_vec1, mol_vec2, xlen_vec,
- | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 906 | ylen_vec, xa, ya, seqx, seqy, secx, secy, len_aa, len_na, chain1_num,
- | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 907 | chain2_num, TMave_mat, seqxA_mat, seqyA_mat, assign1_list, assign2_list,
- | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 908 | sequence, d0_scale, fast_opt, chainmap);
- | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/openstructure-2.9.2/modules/bindings/src/wrap_tmalign.cc:551:18: note: 'seqy' was declared here
- 551 | char *seqx, *seqy; // for the protein sequence
- | ^~~~
-[ 30%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/domain_find.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/domain_find.cc.o -MF CMakeFiles/ost_mol_alg.dir/domain_find.cc.o.d -o CMakeFiles/ost_mol_alg.dir/domain_find.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/domain_find.cc
-[ 30%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/similarity_matrix.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/similarity_matrix.cc.o -MF CMakeFiles/ost_mol_alg.dir/similarity_matrix.cc.o.d -o CMakeFiles/ost_mol_alg.dir/similarity_matrix.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/similarity_matrix.cc
-[ 30%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_object.cc.o
+[ 29%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_object.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_object.cc.o -MF CMakeFiles/ost_gfx.dir/gfx_object.cc.o.d -o CMakeFiles/ost_gfx.dir/gfx_object.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/gfx_object.cc
-[ 30%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/accessibility.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/accessibility.cc.o -MF CMakeFiles/ost_mol_alg.dir/accessibility.cc.o.d -o CMakeFiles/ost_mol_alg.dir/accessibility.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/accessibility.cc
-[ 30%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/sec_struct.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/sec_struct.cc.o -MF CMakeFiles/ost_mol_alg.dir/sec_struct.cc.o.d -o CMakeFiles/ost_mol_alg.dir/sec_struct.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/sec_struct.cc
-[ 31%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/nonstandard.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/nonstandard.cc.o -MF CMakeFiles/ost_mol_alg.dir/nonstandard.cc.o.d -o CMakeFiles/ost_mol_alg.dir/nonstandard.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/nonstandard.cc
-[ 31%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/molck.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/molck.cc.o -MF CMakeFiles/ost_mol_alg.dir/molck.cc.o.d -o CMakeFiles/ost_mol_alg.dir/molck.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/molck.cc
-[ 31%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_prim.cc.o
+[ 29%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/superpose_frames.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/superpose_frames.cc.o -MF CMakeFiles/ost_mol_alg.dir/superpose_frames.cc.o.d -o CMakeFiles/ost_mol_alg.dir/superpose_frames.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/superpose_frames.cc
+[ 29%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_prim.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_prim.cc.o -MF CMakeFiles/ost_gfx.dir/gfx_prim.cc.o.d -o CMakeFiles/ost_gfx.dir/gfx_prim.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/gfx_prim.cc
In file included from /usr/include/c++/14/string:54,
from /usr/include/c++/14/bits/locale_classes.h:40,
@@ -19017,7 +18938,7 @@
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/ostream:40,
from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/log.hh:22,
- from /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/contact_overlap.cc:1:
+ from /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/distance_rmsd_test.cc:1:
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:904:15,
inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
@@ -19027,11 +18948,10 @@
inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
- inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
- inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
- inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
- inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::AtomBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:365:38,
- inlined from 'void ost::mol::alg::CalcContactNodeDegree(const ContactList&)' at /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/contact_overlap.cc:66:20:
+ inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
+ inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
+ inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
+ inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:358:38:
/usr/include/c++/14/bits/basic_string.h:1084:16: warning: '*(const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<24, 4>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<24, 4>::data_)).std::__cxx11::basic_string<char>::_M_string_length' may be used uninitialized [-Wmaybe-uninitialized]
1084 | { return _M_string_length; }
| ^~~~~~~~~~~~~~~~
@@ -19039,31 +18959,8 @@
from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/query.hh:30,
from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/entity_handle.hh:26,
from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/mol.hh:22,
- from /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/contact_overlap.cc:2:
-/usr/include/boost/variant/variant.hpp: In function 'void ost::mol::alg::CalcContactNodeDegree(const ContactList&)':
-/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
- 2107 | variant temp(rhs);
- | ^~~~
-In file included from /usr/include/c++/14/ios:42:
-In static member function 'static constexpr void std::char_traits<char>::assign(char_type&, const char_type&)',
- inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:433:23,
- inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:882:18,
- inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
- inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
- inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
- inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
- inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
- inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
- inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
- inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
- inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
- inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
- inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::AtomBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:365:38,
- inlined from 'void ost::mol::alg::CalcContactNodeDegree(const ContactList&)' at /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/contact_overlap.cc:66:20:
-/usr/include/c++/14/bits/char_traits.h:350:16: warning: '((const std::char_traits<char>::char_type*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<24, 4>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<24, 4>::data_)))[8]' may be used uninitialized [-Wmaybe-uninitialized]
- 350 | __c1 = __c2;
- | ^~~~
-/usr/include/boost/variant/variant.hpp: In function 'void ost::mol::alg::CalcContactNodeDegree(const ContactList&)':
+ from /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/distance_rmsd_test.cc:2:
+/usr/include/boost/variant/variant.hpp: In member function 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
2107 | variant temp(rhs);
| ^~~~
@@ -19075,15 +18972,14 @@
inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
- inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
- inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
- inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
- inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::AtomBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:365:38,
- inlined from 'void ost::mol::alg::CalcContactNodeDegree(const ContactList&)' at /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/contact_overlap.cc:66:20:
+ inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
+ inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
+ inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
+ inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:358:38:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<24, 4>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<24, 4>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
905 | _M_capacity(__str._M_allocated_capacity);
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/usr/include/boost/variant/variant.hpp: In function 'void ost::mol::alg::CalcContactNodeDegree(const ContactList&)':
+/usr/include/boost/variant/variant.hpp: In member function 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
2107 | variant temp(rhs);
| ^~~~
@@ -19095,29 +18991,95 @@
inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
- inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
- inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
- inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
- inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::AtomBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:365:38,
- inlined from 'void ost::mol::alg::CalcContactNodeDegree(const ContactList&)' at /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/contact_overlap.cc:66:20:
+ inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
+ inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
+ inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
+ inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:358:38:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<24, 4>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<24, 4>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
905 | _M_capacity(__str._M_allocated_capacity);
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/usr/include/boost/variant/variant.hpp: In function 'void ost::mol::alg::CalcContactNodeDegree(const ContactList&)':
+/usr/include/boost/variant/variant.hpp: In member function 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
2107 | variant temp(rhs);
| ^~~~
-[ 31%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/find_membrane.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/find_membrane.cc.o -MF CMakeFiles/ost_mol_alg.dir/find_membrane.cc.o.d -o CMakeFiles/ost_mol_alg.dir/find_membrane.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/find_membrane.cc
-[ 31%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_test_object.cc.o
+[ 29%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_test_object.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_test_object.cc.o -MF CMakeFiles/ost_gfx.dir/gfx_test_object.cc.o.d -o CMakeFiles/ost_gfx.dir/gfx_test_object.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/gfx_test_object.cc
+[ 29%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/filter_clashes.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/filter_clashes.cc.o -MF CMakeFiles/ost_mol_alg.dir/filter_clashes.cc.o.d -o CMakeFiles/ost_mol_alg.dir/filter_clashes.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/filter_clashes.cc
+In file included from /usr/include/i386-linux-gnu/c++/14/bits/c++allocator.h:33,
+ from /usr/include/c++/14/bits/allocator.h:46,
+ from /usr/include/c++/14/string:43,
+ from /usr/include/c++/14/bits/locale_classes.h:40,
+ from /usr/include/c++/14/bits/ios_base.h:41,
+ from /usr/include/c++/14/ios:44,
+ from /usr/include/c++/14/istream:40,
+ from /usr/include/c++/14/sstream:40,
+ from /build/reproducible-path/openstructure-2.9.2/modules/bindings/src/USalign/basic_fun.h:12:
+In member function 'void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = std::pair<double, int>; _Args = {std::pair<double, int>}; _Tp = std::pair<double, int>]',
+ inlined from 'static void std::allocator_traits<std::allocator<_CharT> >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = std::pair<double, int>; _Args = {std::pair<double, int>}; _Tp = std::pair<double, int>]' at /usr/include/c++/14/bits/alloc_traits.h:575:17,
+ inlined from 'void std::vector<_Tp, _Alloc>::_M_realloc_append(_Args&& ...) [with _Args = {std::pair<double, int>}; _Tp = std::pair<double, int>; _Alloc = std::allocator<std::pair<double, int> >]' at /usr/include/c++/14/bits/vector.tcc:634:26,
+ inlined from 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<double, int>}; _Tp = std::pair<double, int>; _Alloc = std::allocator<std::pair<double, int> >]' at /usr/include/c++/14/bits/vector.tcc:123:21,
+ inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair<double, int>; _Alloc = std::allocator<std::pair<double, int> >]' at /usr/include/c++/14/bits/stl_vector.h:1301:21,
+ inlined from 'int trimComplex(std::vector<std::vector<std::vector<double> > >&, std::vector<std::vector<char> >&, std::vector<std::vector<char> >&, std::vector<int>&, const std::vector<std::vector<std::vector<double> > >&, const std::vector<std::vector<char> >&, const std::vector<std::vector<char> >&, const std::vector<int>&, const std::vector<int>&, int, int)' at /build/reproducible-path/openstructure-2.9.2/modules/bindings/src/USalign/MMalign.h:2955:33:
+/usr/include/c++/14/bits/new_allocator.h:191:11: warning: 'dinter' may be used uninitialized [-Wmaybe-uninitialized]
+ 191 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); }
+ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/openstructure-2.9.2/modules/bindings/src/USalign/MMalign.h: In function 'int trimComplex(std::vector<std::vector<std::vector<double> > >&, std::vector<std::vector<char> >&, std::vector<std::vector<char> >&, std::vector<int>&, const std::vector<std::vector<std::vector<double> > >&, const std::vector<std::vector<char> >&, const std::vector<std::vector<char> >&, const std::vector<int>&, const std::vector<int>&, int, int)':
+/build/reproducible-path/openstructure-2.9.2/modules/bindings/src/USalign/MMalign.h:2908:12: note: 'dinter' was declared here
+ 2908 | double dinter;
+ | ^~~~~~
+[ 30%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/input.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/input.cc.o -MF CMakeFiles/ost_gfx.dir/input.cc.o.d -o CMakeFiles/ost_gfx.dir/input.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/input.cc
+[ 30%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/prim_list.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/prim_list.cc.o -MF CMakeFiles/ost_gfx.dir/prim_list.cc.o.d -o CMakeFiles/ost_gfx.dir/prim_list.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/prim_list.cc
+[ 31%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/construct_cbeta.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/construct_cbeta.cc.o -MF CMakeFiles/ost_mol_alg.dir/construct_cbeta.cc.o.d -o CMakeFiles/ost_mol_alg.dir/construct_cbeta.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/construct_cbeta.cc
+[ 31%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/scene.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/scene.cc.o -MF CMakeFiles/ost_gfx.dir/scene.cc.o.d -o CMakeFiles/ost_gfx.dir/scene.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/scene.cc
+In file included from /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/gfx_test_object.hh:28,
+ from /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/gfx_test_object.cc:31:
+/build/reproducible-path/openstructure-2.9.2/modules/gfx/src/gfx_object.hh:124:31: warning: 'virtual geom::AlignedCuboid ost::gfx::GfxObj::GetBoundingBox(bool) const' was hidden [-Woverloaded-virtual=]
+ 124 | virtual geom::AlignedCuboid GetBoundingBox(bool use_tf=false) const;
+ | ^~~~~~~~~~~~~~
+/build/reproducible-path/openstructure-2.9.2/modules/gfx/src/gfx_test_object.hh:40:31: note: by 'virtual geom::AlignedCuboid ost::gfx::GfxTestObj::GetBoundingBox() const'
+ 40 | virtual geom::AlignedCuboid GetBoundingBox() const;
+ | ^~~~~~~~~~~~~~
+[ 31%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/selection.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/selection.cc.o -MF CMakeFiles/ost_gfx.dir/selection.cc.o.d -o CMakeFiles/ost_gfx.dir/selection.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/selection.cc
+[ 31%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/trajectory_analysis.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/trajectory_analysis.cc.o -MF CMakeFiles/ost_mol_alg.dir/trajectory_analysis.cc.o.d -o CMakeFiles/ost_mol_alg.dir/trajectory_analysis.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/trajectory_analysis.cc
+[ 31%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/structure_analysis.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/structure_analysis.cc.o -MF CMakeFiles/ost_mol_alg.dir/structure_analysis.cc.o.d -o CMakeFiles/ost_mol_alg.dir/structure_analysis.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/structure_analysis.cc
+In file included from /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/scene.cc:49:
+/build/reproducible-path/openstructure-2.9.2/modules/gfx/src/gfx_object.hh:124:31: warning: 'virtual geom::AlignedCuboid ost::gfx::GfxObj::GetBoundingBox(bool) const' was hidden [-Woverloaded-virtual=]
+ 124 | virtual geom::AlignedCuboid GetBoundingBox(bool use_tf=false) const;
+ | ^~~~~~~~~~~~~~
+In file included from /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/scene.cc:50:
+/build/reproducible-path/openstructure-2.9.2/modules/gfx/src/gfx_test_object.hh:40:31: note: by 'virtual geom::AlignedCuboid ost::gfx::GfxTestObj::GetBoundingBox() const'
+ 40 | virtual geom::AlignedCuboid GetBoundingBox() const;
+ | ^~~~~~~~~~~~~~
+[ 31%] Linking CXX shared module ../../../stage/lib/python3.13/dist-packages/ost/_ost_base.so
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_base.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_ost_base.dir/link.d -Wl,-z,relro -shared -o ../../../stage/lib/python3.13/dist-packages/ost/_ost_base.so CMakeFiles/_ost_base.dir/wrap_base.cc.o CMakeFiles/_ost_base.dir/export_logger.cc.o CMakeFiles/_ost_base.dir/export_range.cc.o CMakeFiles/_ost_base.dir/export_units.cc.o -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib: ../../../stage/lib/libost_base.so.2.9.2 /usr/lib/i386-linux-gnu/libpython3.13.so /usr/lib/i386-linux-gnu/libboost_python313.so.1.83.0 ../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/base/pymod/settings.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/./settings.pyc\",\"settings.py\",doraise=True)"
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/base/pymod/stutil.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/./stutil.pyc\",\"stutil.py\",doraise=True)"
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/base/pymod/table.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/./table.pyc\",\"table.py\",doraise=True)"
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/base/pymod/table_selector.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/./table_selector.pyc\",\"table_selector.py\",doraise=True)"
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/base/pymod/xmlrunner.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/./xmlrunner.pyc\",\"xmlrunner.py\",doraise=True)"
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/base/pymod/testutils.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/./testutils.pyc\",\"testutils.py\",doraise=True)"
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 31%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/surface.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/surface.cc.o -MF CMakeFiles/ost_gfx.dir/surface.cc.o.d -o CMakeFiles/ost_gfx.dir/surface.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/surface.cc
+[ 31%] Built target _ost_base
+[ 31%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/consistency_checks.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/consistency_checks.cc.o -MF CMakeFiles/ost_mol_alg.dir/consistency_checks.cc.o.d -o CMakeFiles/ost_mol_alg.dir/consistency_checks.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/consistency_checks.cc
In file included from /usr/include/c++/14/string:54,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/ostream:40,
from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/log.hh:22,
- from /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/distance_rmsd_test.cc:1:
+ from /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/filter_clashes.cc:19:
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:904:15,
inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
@@ -19127,10 +19089,10 @@
inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
- inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
- inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
- inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
- inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:358:38:
+ inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = bool; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
+ inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = bool; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
+ inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = bool; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
+ inlined from 'void ost::GenericPropContainer<H>::SetBoolProp(const String&, bool) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:372:38:
/usr/include/c++/14/bits/basic_string.h:1084:16: warning: '*(const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<24, 4>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<24, 4>::data_)).std::__cxx11::basic_string<char>::_M_string_length' may be used uninitialized [-Wmaybe-uninitialized]
1084 | { return _M_string_length; }
| ^~~~~~~~~~~~~~~~
@@ -19138,8 +19100,30 @@
from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/query.hh:30,
from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/entity_handle.hh:26,
from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/mol.hh:22,
- from /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/distance_rmsd_test.cc:2:
-/usr/include/boost/variant/variant.hpp: In member function 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]':
+ from /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/filter_clashes.cc:20:
+/usr/include/boost/variant/variant.hpp: In member function 'void ost::GenericPropContainer<H>::SetBoolProp(const String&, bool) [with H = ost::mol::ResidueBase]':
+/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
+ 2107 | variant temp(rhs);
+ | ^~~~
+In file included from /usr/include/c++/14/ios:42:
+In static member function 'static constexpr void std::char_traits<char>::assign(char_type&, const char_type&)',
+ inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:433:23,
+ inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:882:18,
+ inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
+ inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
+ inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
+ inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
+ inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
+ inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
+ inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
+ inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = bool; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
+ inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = bool; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
+ inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = bool; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
+ inlined from 'void ost::GenericPropContainer<H>::SetBoolProp(const String&, bool) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:372:38:
+/usr/include/c++/14/bits/char_traits.h:350:16: warning: '((const std::char_traits<char>::char_type*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<24, 4>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<24, 4>::data_)))[8]' may be used uninitialized [-Wmaybe-uninitialized]
+ 350 | __c1 = __c2;
+ | ^~~~
+/usr/include/boost/variant/variant.hpp: In member function 'void ost::GenericPropContainer<H>::SetBoolProp(const String&, bool) [with H = ost::mol::ResidueBase]':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
2107 | variant temp(rhs);
| ^~~~
@@ -19151,14 +19135,14 @@
inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
- inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
- inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
- inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
- inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:358:38:
+ inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = bool; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
+ inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = bool; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
+ inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = bool; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
+ inlined from 'void ost::GenericPropContainer<H>::SetBoolProp(const String&, bool) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:372:38:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<24, 4>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<24, 4>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
905 | _M_capacity(__str._M_allocated_capacity);
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/usr/include/boost/variant/variant.hpp: In member function 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]':
+/usr/include/boost/variant/variant.hpp: In member function 'void ost::GenericPropContainer<H>::SetBoolProp(const String&, bool) [with H = ost::mol::ResidueBase]':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
2107 | variant temp(rhs);
| ^~~~
@@ -19170,23 +19154,60 @@
inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
- inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
- inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
- inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
- inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:358:38:
+ inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = bool; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
+ inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = bool; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
+ inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = bool; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
+ inlined from 'void ost::GenericPropContainer<H>::SetBoolProp(const String&, bool) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:372:38:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<24, 4>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<24, 4>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
905 | _M_capacity(__str._M_allocated_capacity);
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/usr/include/boost/variant/variant.hpp: In member function 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]':
+/usr/include/boost/variant/variant.hpp: In member function 'void ost::GenericPropContainer<H>::SetBoolProp(const String&, bool) [with H = ost::mol::ResidueBase]':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
2107 | variant temp(rhs);
| ^~~~
-[ 31%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/entity_to_density.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/entity_to_density.cc.o -MF CMakeFiles/ost_mol_alg.dir/entity_to_density.cc.o.d -o CMakeFiles/ost_mol_alg.dir/entity_to_density.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/entity_to_density.cc
-[ 31%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/biounit.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/biounit.cc.o -MF CMakeFiles/ost_mol_alg.dir/biounit.cc.o.d -o CMakeFiles/ost_mol_alg.dir/biounit.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/biounit.cc
-[ 31%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/gdt.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/gdt.cc.o -MF CMakeFiles/ost_mol_alg.dir/gdt.cc.o.d -o CMakeFiles/ost_mol_alg.dir/gdt.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/gdt.cc
+[ 31%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/pdbize.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/pdbize.cc.o -MF CMakeFiles/ost_mol_alg.dir/pdbize.cc.o.d -o CMakeFiles/ost_mol_alg.dir/pdbize.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/pdbize.cc
+[ 31%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/adjacency_bitmap.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/adjacency_bitmap.cc.o -MF CMakeFiles/ost_mol_alg.dir/adjacency_bitmap.cc.o.d -o CMakeFiles/ost_mol_alg.dir/adjacency_bitmap.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/adjacency_bitmap.cc
+[ 31%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gradient.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/gradient.cc.o -MF CMakeFiles/ost_gfx.dir/gradient.cc.o.d -o CMakeFiles/ost_gfx.dir/gradient.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/gradient.cc
+[ 31%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/contact_overlap.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/contact_overlap.cc.o -MF CMakeFiles/ost_mol_alg.dir/contact_overlap.cc.o.d -o CMakeFiles/ost_mol_alg.dir/contact_overlap.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/contact_overlap.cc
+In file included from /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/gfx_object_base.hh:34,
+ from /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/gfx_object.hh:40,
+ from /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/surface.hh:32,
+ from /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/surface.cc:28:
+/build/reproducible-path/openstructure-2.9.2/modules/gfx/src/gfx_node.hh:55:16: warning: 'virtual void ost::gfx::GfxNode::DeepSwap(ost::gfx::GfxNode&)' was hidden [-Woverloaded-virtual=]
+ 55 | virtual void DeepSwap(GfxNode& n);
+ | ^~~~~~~~
+/build/reproducible-path/openstructure-2.9.2/modules/gfx/src/gfx_object.hh:58:16: note: by 'virtual void ost::gfx::GfxObj::DeepSwap(ost::gfx::GfxObj&)'
+ 58 | virtual void DeepSwap(GfxObj& go);
+ | ^~~~~~~~
+[ 31%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gradient_manager.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/gradient_manager.cc.o -MF CMakeFiles/ost_gfx.dir/gradient_manager.cc.o.d -o CMakeFiles/ost_gfx.dir/gradient_manager.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/gradient_manager.cc
+[ 31%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/domain_find.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/domain_find.cc.o -MF CMakeFiles/ost_mol_alg.dir/domain_find.cc.o.d -o CMakeFiles/ost_mol_alg.dir/domain_find.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/domain_find.cc
+[ 31%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/similarity_matrix.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/similarity_matrix.cc.o -MF CMakeFiles/ost_mol_alg.dir/similarity_matrix.cc.o.d -o CMakeFiles/ost_mol_alg.dir/similarity_matrix.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/similarity_matrix.cc
+[ 31%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/vertex_array.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/vertex_array.cc.o -MF CMakeFiles/ost_gfx.dir/vertex_array.cc.o.d -o CMakeFiles/ost_gfx.dir/vertex_array.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/vertex_array.cc
+[ 31%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/vertex_array_helper.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/vertex_array_helper.cc.o -MF CMakeFiles/ost_gfx.dir/vertex_array_helper.cc.o.d -o CMakeFiles/ost_gfx.dir/vertex_array_helper.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/vertex_array_helper.cc
+[ 31%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/accessibility.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/accessibility.cc.o -MF CMakeFiles/ost_mol_alg.dir/accessibility.cc.o.d -o CMakeFiles/ost_mol_alg.dir/accessibility.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/accessibility.cc
+[ 31%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/material.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/material.cc.o -MF CMakeFiles/ost_gfx.dir/material.cc.o.d -o CMakeFiles/ost_gfx.dir/material.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/material.cc
+[ 32%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/povray.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/povray.cc.o -MF CMakeFiles/ost_gfx.dir/povray.cc.o.d -o CMakeFiles/ost_gfx.dir/povray.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/povray.cc
+[ 32%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gost_exporter.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/gost_exporter.cc.o -MF CMakeFiles/ost_gfx.dir/gost_exporter.cc.o.d -o CMakeFiles/ost_gfx.dir/gost_exporter.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/gost_exporter.cc
+In file included from /usr/include/c++/14/string:54,
+ from /usr/include/c++/14/bits/locale_classes.h:40,
+ from /usr/include/c++/14/bits/ios_base.h:41,
+ from /usr/include/c++/14/ios:44,
+ from /usr/include/c++/14/ostream:40,
+ from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/log.hh:22,
+ from /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/contact_overlap.cc:1:
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:904:15,
inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
@@ -19199,15 +19220,21 @@
inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
- inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:365:38,
- inlined from 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)' at /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/contact_overlap.cc:445:21:
+ inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::AtomBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:365:38,
+ inlined from 'void ost::mol::alg::CalcContactNodeDegree(const ContactList&)' at /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/contact_overlap.cc:66:20:
/usr/include/c++/14/bits/basic_string.h:1084:16: warning: '*(const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<24, 4>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<24, 4>::data_)).std::__cxx11::basic_string<char>::_M_string_length' may be used uninitialized [-Wmaybe-uninitialized]
1084 | { return _M_string_length; }
| ^~~~~~~~~~~~~~~~
-/usr/include/boost/variant/variant.hpp: In function 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)':
+In file included from /usr/include/boost/variant.hpp:17,
+ from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/query.hh:30,
+ from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/entity_handle.hh:26,
+ from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/mol.hh:22,
+ from /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/contact_overlap.cc:2:
+/usr/include/boost/variant/variant.hpp: In function 'void ost::mol::alg::CalcContactNodeDegree(const ContactList&)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
2107 | variant temp(rhs);
| ^~~~
+In file included from /usr/include/c++/14/ios:42:
In static member function 'static constexpr void std::char_traits<char>::assign(char_type&, const char_type&)',
inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:433:23,
inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:882:18,
@@ -19221,12 +19248,12 @@
inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
- inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:365:38,
- inlined from 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)' at /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/contact_overlap.cc:445:21:
+ inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::AtomBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:365:38,
+ inlined from 'void ost::mol::alg::CalcContactNodeDegree(const ContactList&)' at /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/contact_overlap.cc:66:20:
/usr/include/c++/14/bits/char_traits.h:350:16: warning: '((const std::char_traits<char>::char_type*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<24, 4>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<24, 4>::data_)))[8]' may be used uninitialized [-Wmaybe-uninitialized]
350 | __c1 = __c2;
| ^~~~
-/usr/include/boost/variant/variant.hpp: In function 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)':
+/usr/include/boost/variant/variant.hpp: In function 'void ost::mol::alg::CalcContactNodeDegree(const ContactList&)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
2107 | variant temp(rhs);
| ^~~~
@@ -19241,12 +19268,12 @@
inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
- inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:365:38,
- inlined from 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)' at /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/contact_overlap.cc:445:21:
+ inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::AtomBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:365:38,
+ inlined from 'void ost::mol::alg::CalcContactNodeDegree(const ContactList&)' at /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/contact_overlap.cc:66:20:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<24, 4>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<24, 4>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
905 | _M_capacity(__str._M_allocated_capacity);
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/usr/include/boost/variant/variant.hpp: In function 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)':
+/usr/include/boost/variant/variant.hpp: In function 'void ost::mol::alg::CalcContactNodeDegree(const ContactList&)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
2107 | variant temp(rhs);
| ^~~~
@@ -19261,15 +19288,27 @@
inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
- inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:365:38,
- inlined from 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)' at /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/contact_overlap.cc:445:21:
+ inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::AtomBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:365:38,
+ inlined from 'void ost::mol::alg::CalcContactNodeDegree(const ContactList&)' at /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/contact_overlap.cc:66:20:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<24, 4>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<24, 4>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
905 | _M_capacity(__str._M_allocated_capacity);
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/usr/include/boost/variant/variant.hpp: In function 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)':
+/usr/include/boost/variant/variant.hpp: In function 'void ost::mol::alg::CalcContactNodeDegree(const ContactList&)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
2107 | variant temp(rhs);
| ^~~~
+[ 32%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/texture.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/texture.cc.o -MF CMakeFiles/ost_gfx.dir/texture.cc.o.d -o CMakeFiles/ost_gfx.dir/texture.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/texture.cc
+[ 32%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/color_op.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/color_op.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color_ops/color_op.cc
+[ 32%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/by_element_color_op.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/by_element_color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/by_element_color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/by_element_color_op.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color_ops/by_element_color_op.cc
+/build/reproducible-path/openstructure-2.9.2/modules/gfx/src/vertex_array.cc:1311:8: warning: 'geom::Vec3 ost::gfx::{anonymous}::make_aaline_edge(const geom::Vec2&, const geom::Vec2&, float)' defined but not used [-Wunused-function]
+ 1311 | Vec3 make_aaline_edge(const Vec2& c1, const Vec2& c0, float s)
+ | ^~~~~~~~~~~~~~~~
+/build/reproducible-path/openstructure-2.9.2/modules/gfx/src/vertex_array.cc:1239:8: warning: 'void ost::gfx::{anonymous}::render_aalines(AALineList&, float, float)' defined but not used [-Wunused-function]
+ 1239 | void render_aalines(AALineList& line_list, float w, float r)
+ | ^~~~~~~~~~~~~~
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:904:15,
inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
@@ -19283,7 +19322,7 @@
inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:365:38,
- inlined from 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)' at /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/contact_overlap.cc:448:21:
+ inlined from 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)' at /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/contact_overlap.cc:445:21:
/usr/include/c++/14/bits/basic_string.h:1084:16: warning: '*(const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<24, 4>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<24, 4>::data_)).std::__cxx11::basic_string<char>::_M_string_length' may be used uninitialized [-Wmaybe-uninitialized]
1084 | { return _M_string_length; }
| ^~~~~~~~~~~~~~~~
@@ -19305,7 +19344,7 @@
inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:365:38,
- inlined from 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)' at /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/contact_overlap.cc:448:21:
+ inlined from 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)' at /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/contact_overlap.cc:445:21:
/usr/include/c++/14/bits/char_traits.h:350:16: warning: '((const std::char_traits<char>::char_type*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<24, 4>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<24, 4>::data_)))[8]' may be used uninitialized [-Wmaybe-uninitialized]
350 | __c1 = __c2;
| ^~~~
@@ -19325,7 +19364,7 @@
inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:365:38,
- inlined from 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)' at /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/contact_overlap.cc:448:21:
+ inlined from 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)' at /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/contact_overlap.cc:445:21:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<24, 4>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<24, 4>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
905 | _M_capacity(__str._M_allocated_capacity);
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
@@ -19345,7 +19384,7 @@
inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:365:38,
- inlined from 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)' at /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/contact_overlap.cc:448:21:
+ inlined from 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)' at /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/contact_overlap.cc:445:21:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<24, 4>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<24, 4>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
905 | _M_capacity(__str._M_allocated_capacity);
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
@@ -19366,7 +19405,7 @@
inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:365:38,
- inlined from 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)' at /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/contact_overlap.cc:453:23:
+ inlined from 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)' at /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/contact_overlap.cc:448:21:
/usr/include/c++/14/bits/basic_string.h:1084:16: warning: '*(const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<24, 4>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<24, 4>::data_)).std::__cxx11::basic_string<char>::_M_string_length' may be used uninitialized [-Wmaybe-uninitialized]
1084 | { return _M_string_length; }
| ^~~~~~~~~~~~~~~~
@@ -19388,7 +19427,7 @@
inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:365:38,
- inlined from 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)' at /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/contact_overlap.cc:453:23:
+ inlined from 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)' at /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/contact_overlap.cc:448:21:
/usr/include/c++/14/bits/char_traits.h:350:16: warning: '((const std::char_traits<char>::char_type*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<24, 4>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<24, 4>::data_)))[8]' may be used uninitialized [-Wmaybe-uninitialized]
350 | __c1 = __c2;
| ^~~~
@@ -19408,7 +19447,7 @@
inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:365:38,
- inlined from 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)' at /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/contact_overlap.cc:453:23:
+ inlined from 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)' at /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/contact_overlap.cc:448:21:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<24, 4>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<24, 4>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
905 | _M_capacity(__str._M_allocated_capacity);
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
@@ -19428,7 +19467,7 @@
inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:365:38,
- inlined from 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)' at /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/contact_overlap.cc:453:23:
+ inlined from 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)' at /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/contact_overlap.cc:448:21:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<24, 4>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<24, 4>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
905 | _M_capacity(__str._M_allocated_capacity);
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
@@ -19436,26 +19475,6 @@
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
2107 | variant temp(rhs);
| ^~~~
-[ 32%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/input.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/input.cc.o -MF CMakeFiles/ost_gfx.dir/input.cc.o.d -o CMakeFiles/ost_gfx.dir/input.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/input.cc
-In file included from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38,
- from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/trace_renderer_base.hh:27,
- from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/cartoon_renderer.hh:31,
- from /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/entity.cc:39:
-/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/gfx_object.hh:62:16: warning: 'virtual void ost::gfx::GfxObj::Apply(ost::gfx::GfxNodeVisitor&, ost::gfx::GfxNodeVisitor::Stack)' was hidden [-Woverloaded-virtual=]
- 62 | virtual void Apply(GfxNodeVisitor& v, GfxNodeVisitor::Stack st);
- | ^~~~~
-In file included from /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/entity.cc:52:
-/build/reproducible-path/openstructure-2.9.2/modules/gfx/src/entity.hh:294:8: note: by 'ost::gfx::Entity::Apply'
- 294 | void Apply(const gfx::MapHandleColorOp& op, bool store=true);
- | ^~~~~
-In file included from /usr/include/c++/14/string:54,
- from /usr/include/c++/14/bits/locale_classes.h:40,
- from /usr/include/c++/14/bits/ios_base.h:41,
- from /usr/include/c++/14/ios:44,
- from /usr/include/c++/14/ostream:40,
- from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/log.hh:22,
- from /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/filter_clashes.cc:19:
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:904:15,
inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
@@ -19465,23 +19484,18 @@
inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
- inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = bool; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
- inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = bool; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
- inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = bool; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
- inlined from 'void ost::GenericPropContainer<H>::SetBoolProp(const String&, bool) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:372:38:
+ inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
+ inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
+ inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
+ inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:365:38,
+ inlined from 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)' at /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/contact_overlap.cc:453:23:
/usr/include/c++/14/bits/basic_string.h:1084:16: warning: '*(const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<24, 4>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<24, 4>::data_)).std::__cxx11::basic_string<char>::_M_string_length' may be used uninitialized [-Wmaybe-uninitialized]
1084 | { return _M_string_length; }
| ^~~~~~~~~~~~~~~~
-In file included from /usr/include/boost/variant.hpp:17,
- from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/query.hh:30,
- from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/entity_handle.hh:26,
- from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/mol.hh:22,
- from /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/filter_clashes.cc:20:
-/usr/include/boost/variant/variant.hpp: In member function 'void ost::GenericPropContainer<H>::SetBoolProp(const String&, bool) [with H = ost::mol::ResidueBase]':
+/usr/include/boost/variant/variant.hpp: In function 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
2107 | variant temp(rhs);
| ^~~~
-In file included from /usr/include/c++/14/ios:42:
In static member function 'static constexpr void std::char_traits<char>::assign(char_type&, const char_type&)',
inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:433:23,
inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:882:18,
@@ -19492,14 +19506,15 @@
inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
- inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = bool; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
- inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = bool; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
- inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = bool; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
- inlined from 'void ost::GenericPropContainer<H>::SetBoolProp(const String&, bool) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:372:38:
+ inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
+ inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
+ inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
+ inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:365:38,
+ inlined from 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)' at /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/contact_overlap.cc:453:23:
/usr/include/c++/14/bits/char_traits.h:350:16: warning: '((const std::char_traits<char>::char_type*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<24, 4>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<24, 4>::data_)))[8]' may be used uninitialized [-Wmaybe-uninitialized]
350 | __c1 = __c2;
| ^~~~
-/usr/include/boost/variant/variant.hpp: In member function 'void ost::GenericPropContainer<H>::SetBoolProp(const String&, bool) [with H = ost::mol::ResidueBase]':
+/usr/include/boost/variant/variant.hpp: In function 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
2107 | variant temp(rhs);
| ^~~~
@@ -19511,14 +19526,15 @@
inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
- inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = bool; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
- inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = bool; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
- inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = bool; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
- inlined from 'void ost::GenericPropContainer<H>::SetBoolProp(const String&, bool) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:372:38:
+ inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
+ inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
+ inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
+ inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:365:38,
+ inlined from 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)' at /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/contact_overlap.cc:453:23:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<24, 4>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<24, 4>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
905 | _M_capacity(__str._M_allocated_capacity);
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/usr/include/boost/variant/variant.hpp: In member function 'void ost::GenericPropContainer<H>::SetBoolProp(const String&, bool) [with H = ost::mol::ResidueBase]':
+/usr/include/boost/variant/variant.hpp: In function 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
2107 | variant temp(rhs);
| ^~~~
@@ -19530,107 +19546,114 @@
inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
- inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = bool; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
- inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = bool; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
- inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = bool; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
- inlined from 'void ost::GenericPropContainer<H>::SetBoolProp(const String&, bool) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:372:38:
+ inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
+ inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
+ inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
+ inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:365:38,
+ inlined from 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)' at /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/contact_overlap.cc:453:23:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<24, 4>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<24, 4>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
905 | _M_capacity(__str._M_allocated_capacity);
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/usr/include/boost/variant/variant.hpp: In member function 'void ost::GenericPropContainer<H>::SetBoolProp(const String&, bool) [with H = ost::mol::ResidueBase]':
+/usr/include/boost/variant/variant.hpp: In function 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
2107 | variant temp(rhs);
| ^~~~
-[ 32%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/prim_list.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/prim_list.cc.o -MF CMakeFiles/ost_gfx.dir/prim_list.cc.o.d -o CMakeFiles/ost_gfx.dir/prim_list.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/prim_list.cc
-[ 32%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/scene.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/scene.cc.o -MF CMakeFiles/ost_gfx.dir/scene.cc.o.d -o CMakeFiles/ost_gfx.dir/scene.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/scene.cc
-[ 32%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/selection.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/selection.cc.o -MF CMakeFiles/ost_gfx.dir/selection.cc.o.d -o CMakeFiles/ost_gfx.dir/selection.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/selection.cc
-[ 32%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/surface.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/surface.cc.o -MF CMakeFiles/ost_gfx.dir/surface.cc.o.d -o CMakeFiles/ost_gfx.dir/surface.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/surface.cc
-In file included from /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/gfx_test_object.hh:28,
- from /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/gfx_test_object.cc:31:
-/build/reproducible-path/openstructure-2.9.2/modules/gfx/src/gfx_object.hh:124:31: warning: 'virtual geom::AlignedCuboid ost::gfx::GfxObj::GetBoundingBox(bool) const' was hidden [-Woverloaded-virtual=]
- 124 | virtual geom::AlignedCuboid GetBoundingBox(bool use_tf=false) const;
- | ^~~~~~~~~~~~~~
-/build/reproducible-path/openstructure-2.9.2/modules/gfx/src/gfx_test_object.hh:40:31: note: by 'virtual geom::AlignedCuboid ost::gfx::GfxTestObj::GetBoundingBox() const'
- 40 | virtual geom::AlignedCuboid GetBoundingBox() const;
- | ^~~~~~~~~~~~~~
-[ 32%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gradient.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/gradient.cc.o -MF CMakeFiles/ost_gfx.dir/gradient.cc.o.d -o CMakeFiles/ost_gfx.dir/gradient.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/gradient.cc
-[ 32%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gradient_manager.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/gradient_manager.cc.o -MF CMakeFiles/ost_gfx.dir/gradient_manager.cc.o.d -o CMakeFiles/ost_gfx.dir/gradient_manager.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/gradient_manager.cc
-[ 32%] Linking CXX shared library ../../../stage/lib/libost_bindings.so
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_bindings.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/ost_bindings.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_bindings.so.2.9 -o ../../../stage/lib/libost_bindings.so.2.9.2 CMakeFiles/ost_bindings.dir/wrap_tmalign.cc.o -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib: ../../../stage/lib/libost_seq.so.2.9.2 ../../../stage/lib/libost_mol.so.2.9.2 ../../../stage/lib/libost_info.so.2.9.2 ../../../stage/lib/libost_base.so.2.9.2 ../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/i386-linux-gnu/libboost_iostreams.so.1.83.0
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_bindings.so.2.9.2 ../../../stage/lib/libost_bindings.so.2.9 ../../../stage/lib/libost_bindings.so
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 32%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/vertex_array.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/vertex_array.cc.o -MF CMakeFiles/ost_gfx.dir/vertex_array.cc.o.d -o CMakeFiles/ost_gfx.dir/vertex_array.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/vertex_array.cc
-[ 32%] Built target ost_bindings
-[ 32%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/vertex_array_helper.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/vertex_array_helper.cc.o -MF CMakeFiles/ost_gfx.dir/vertex_array_helper.cc.o.d -o CMakeFiles/ost_gfx.dir/vertex_array_helper.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/vertex_array_helper.cc
-/build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/gdt.cc: In function 'void {anonymous}::Superpose(Eigen::Matrix<double, -1, 3>&, Eigen::Matrix<double, -1, 3>&, Eigen::Matrix<double, 1, 3>&, Eigen::Matrix<double, 1, 3>&, Real&, Eigen::Matrix<double, 3, 3>&)':
-/build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/gdt.cc:169:22: warning: comparison of integer expressions of different signedness: 'uint' {aka 'unsigned int'} and 'Eigen::Index' {aka 'int'} [-Wsign-compare]
- 169 | for (uint i = 0; i < pos_one.rows(); ++i) {
- | ~~^~~~~~~~~~~~~~~~
-/build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/gdt.cc:175:22: warning: comparison of integer expressions of different signedness: 'uint' {aka 'unsigned int'} and 'Eigen::Index' {aka 'int'} [-Wsign-compare]
- 175 | for (uint i = 0; i < pos_two.rows(); ++i) {
- | ~~^~~~~~~~~~~~~~~~
-/build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/gdt.cc:182:22: warning: comparison of integer expressions of different signedness: 'uint' {aka 'unsigned int'} and 'Eigen::Index' {aka 'int'} [-Wsign-compare]
- 182 | for (uint i = 0; i < pos_one.rows(); ++i){
- | ~~^~~~~~~~~~~~~~~~
-[ 34%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/material.cc.o
-[ 34%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/povray.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/povray.cc.o -MF CMakeFiles/ost_gfx.dir/povray.cc.o.d -o CMakeFiles/ost_gfx.dir/povray.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/povray.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/material.cc.o -MF CMakeFiles/ost_gfx.dir/material.cc.o.d -o CMakeFiles/ost_gfx.dir/material.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/material.cc
-[ 34%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gost_exporter.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/gost_exporter.cc.o -MF CMakeFiles/ost_gfx.dir/gost_exporter.cc.o.d -o CMakeFiles/ost_gfx.dir/gost_exporter.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/gost_exporter.cc
-In file included from /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/gfx_object_base.hh:34,
- from /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/gfx_object.hh:40,
- from /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/surface.hh:32,
- from /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/surface.cc:28:
-/build/reproducible-path/openstructure-2.9.2/modules/gfx/src/gfx_node.hh:55:16: warning: 'virtual void ost::gfx::GfxNode::DeepSwap(ost::gfx::GfxNode&)' was hidden [-Woverloaded-virtual=]
- 55 | virtual void DeepSwap(GfxNode& n);
- | ^~~~~~~~
-/build/reproducible-path/openstructure-2.9.2/modules/gfx/src/gfx_object.hh:58:16: note: by 'virtual void ost::gfx::GfxObj::DeepSwap(ost::gfx::GfxObj&)'
- 58 | virtual void DeepSwap(GfxObj& go);
- | ^~~~~~~~
-In file included from /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/scene.cc:49:
-/build/reproducible-path/openstructure-2.9.2/modules/gfx/src/gfx_object.hh:124:31: warning: 'virtual geom::AlignedCuboid ost::gfx::GfxObj::GetBoundingBox(bool) const' was hidden [-Woverloaded-virtual=]
- 124 | virtual geom::AlignedCuboid GetBoundingBox(bool use_tf=false) const;
- | ^~~~~~~~~~~~~~
-In file included from /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/scene.cc:50:
-/build/reproducible-path/openstructure-2.9.2/modules/gfx/src/gfx_test_object.hh:40:31: note: by 'virtual geom::AlignedCuboid ost::gfx::GfxTestObj::GetBoundingBox() const'
- 40 | virtual geom::AlignedCuboid GetBoundingBox() const;
- | ^~~~~~~~~~~~~~
-[ 34%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/texture.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/texture.cc.o -MF CMakeFiles/ost_gfx.dir/texture.cc.o.d -o CMakeFiles/ost_gfx.dir/texture.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/texture.cc
-[ 34%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/color_op.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/color_op.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color_ops/color_op.cc
-[ 34%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/by_element_color_op.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/by_element_color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/by_element_color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/by_element_color_op.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color_ops/by_element_color_op.cc
-[ 34%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/by_chain_color_op.cc.o
+[ 32%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/sec_struct.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/sec_struct.cc.o -MF CMakeFiles/ost_mol_alg.dir/sec_struct.cc.o.d -o CMakeFiles/ost_mol_alg.dir/sec_struct.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/sec_struct.cc
+[ 32%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/by_chain_color_op.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/by_chain_color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/by_chain_color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/by_chain_color_op.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color_ops/by_chain_color_op.cc
-[ 34%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/uniform_color_op.cc.o
+In file included from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38,
+ from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/entity.hh:41,
+ from /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color_ops/by_element_color_op.cc:22:
+/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/gfx_object.hh:62:16: warning: 'virtual void ost::gfx::GfxObj::Apply(ost::gfx::GfxNodeVisitor&, ost::gfx::GfxNodeVisitor::Stack)' was hidden [-Woverloaded-virtual=]
+ 62 | virtual void Apply(GfxNodeVisitor& v, GfxNodeVisitor::Stack st);
+ | ^~~~~
+/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/entity.hh:294:8: note: by 'ost::gfx::Entity::Apply'
+ 294 | void Apply(const gfx::MapHandleColorOp& op, bool store=true);
+ | ^~~~~
+[ 32%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/uniform_color_op.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/uniform_color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/uniform_color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/uniform_color_op.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color_ops/uniform_color_op.cc
+[ 34%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/nonstandard.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/nonstandard.cc.o -MF CMakeFiles/ost_mol_alg.dir/nonstandard.cc.o.d -o CMakeFiles/ost_mol_alg.dir/nonstandard.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/nonstandard.cc
[ 34%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/gradient_color_op.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/gradient_color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/gradient_color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/gradient_color_op.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color_ops/gradient_color_op.cc
[ 34%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/entity_view_color_op.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/entity_view_color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/entity_view_color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/entity_view_color_op.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color_ops/entity_view_color_op.cc
-[ 34%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/basic_gradient_color_op.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/basic_gradient_color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/basic_gradient_color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/basic_gradient_color_op.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color_ops/basic_gradient_color_op.cc
-/build/reproducible-path/openstructure-2.9.2/modules/gfx/src/vertex_array.cc:1311:8: warning: 'geom::Vec3 ost::gfx::{anonymous}::make_aaline_edge(const geom::Vec2&, const geom::Vec2&, float)' defined but not used [-Wunused-function]
- 1311 | Vec3 make_aaline_edge(const Vec2& c1, const Vec2& c0, float s)
- | ^~~~~~~~~~~~~~~~
-/build/reproducible-path/openstructure-2.9.2/modules/gfx/src/vertex_array.cc:1239:8: warning: 'void ost::gfx::{anonymous}::render_aalines(AALineList&, float, float)' defined but not used [-Wunused-function]
- 1239 | void render_aalines(AALineList& line_list, float w, float r)
- | ^~~~~~~~~~~~~~
-[ 34%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/gradient_level_color_op.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/gradient_level_color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/gradient_level_color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/gradient_level_color_op.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color_ops/gradient_level_color_op.cc
-[ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/entity_renderer.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/entity_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/entity_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/entity_renderer.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/entity_renderer.cc
+In file included from /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/domain_find.cc:11:
+In member function 'void ost::mol::alg::AdjacencyBitmap::set(size_t, size_t, bool, bool)',
+ inlined from 'ost::mol::alg::AdjacencyBitmap::AdjacencyBitmap(const ost::mol::alg::DistanceMatrix&, const ost::mol::alg::DistanceMatrix&, Real, Real, int, int)' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/adjacency_bitmap.hh:49:16,
+ inlined from 'static ost::mol::alg::DomainsPtr ost::mol::alg::Domains::FromDistMats(const ost::mol::alg::DistanceMatrix&, const ost::mol::alg::DistanceMatrix&, Real, Real, Real, int, bool, bool)' at /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/domain_find.cc:363:37:
+/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/adjacency_bitmap.hh:109:23: warning: '*(uint64_t*)<unknown>' may be used uninitialized [-Wmaybe-uninitialized]
+ 109 | data_[byte_index] &= ~(one << bit_index);
+ | ~~~~~~~~~~~~~~~~^
+/build/reproducible-path/openstructure-2.9.2/modules/bindings/src/wrap_tmalign.cc: In function 'ost::bindings::MMAlignResult ost::bindings::WrappedMMAlign(const std::vector<geom::Vec3List>&, const std::vector<geom::Vec3List>&, const ost::seq::SequenceList&, const ost::seq::SequenceList&, const std::vector<bool>&, const std::vector<bool>&, bool, const std::map<int, int>&)':
+/build/reproducible-path/openstructure-2.9.2/modules/bindings/src/wrap_tmalign.cc:904:36: warning: 'seqx' may be used uninitialized [-Wmaybe-uninitialized]
+ 904 | if (byresi_opt==0) MMalign_iter(max_total_score, max_iter, xa_vec, ya_vec,
+ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 905 | seqx_vec, seqy_vec, secx_vec, secy_vec, mol_vec1, mol_vec2, xlen_vec,
+ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 906 | ylen_vec, xa, ya, seqx, seqy, secx, secy, len_aa, len_na, chain1_num,
+ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 907 | chain2_num, TMave_mat, seqxA_mat, seqyA_mat, assign1_list, assign2_list,
+ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 908 | sequence, d0_scale, fast_opt, chainmap);
+ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/openstructure-2.9.2/modules/bindings/src/wrap_tmalign.cc:551:11: note: 'seqx' was declared here
+ 551 | char *seqx, *seqy; // for the protein sequence
+ | ^~~~
+/build/reproducible-path/openstructure-2.9.2/modules/bindings/src/wrap_tmalign.cc:904:36: warning: 'secx' may be used uninitialized [-Wmaybe-uninitialized]
+ 904 | if (byresi_opt==0) MMalign_iter(max_total_score, max_iter, xa_vec, ya_vec,
+ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 905 | seqx_vec, seqy_vec, secx_vec, secy_vec, mol_vec1, mol_vec2, xlen_vec,
+ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 906 | ylen_vec, xa, ya, seqx, seqy, secx, secy, len_aa, len_na, chain1_num,
+ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 907 | chain2_num, TMave_mat, seqxA_mat, seqyA_mat, assign1_list, assign2_list,
+ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 908 | sequence, d0_scale, fast_opt, chainmap);
+ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/openstructure-2.9.2/modules/bindings/src/wrap_tmalign.cc:552:11: note: 'secx' was declared here
+ 552 | char *secx, *secy; // for the secondary structure
+ | ^~~~
+/build/reproducible-path/openstructure-2.9.2/modules/bindings/src/wrap_tmalign.cc:904:36: warning: 'secy' may be used uninitialized [-Wmaybe-uninitialized]
+ 904 | if (byresi_opt==0) MMalign_iter(max_total_score, max_iter, xa_vec, ya_vec,
+ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 905 | seqx_vec, seqy_vec, secx_vec, secy_vec, mol_vec1, mol_vec2, xlen_vec,
+ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 906 | ylen_vec, xa, ya, seqx, seqy, secx, secy, len_aa, len_na, chain1_num,
+ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 907 | chain2_num, TMave_mat, seqxA_mat, seqyA_mat, assign1_list, assign2_list,
+ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 908 | sequence, d0_scale, fast_opt, chainmap);
+ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/openstructure-2.9.2/modules/bindings/src/wrap_tmalign.cc:552:18: note: 'secy' was declared here
+ 552 | char *secx, *secy; // for the secondary structure
+ | ^~~~
+/build/reproducible-path/openstructure-2.9.2/modules/bindings/src/wrap_tmalign.cc:904:36: warning: 'seqy' may be used uninitialized [-Wmaybe-uninitialized]
+ 904 | if (byresi_opt==0) MMalign_iter(max_total_score, max_iter, xa_vec, ya_vec,
+ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 905 | seqx_vec, seqy_vec, secx_vec, secy_vec, mol_vec1, mol_vec2, xlen_vec,
+ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 906 | ylen_vec, xa, ya, seqx, seqy, secx, secy, len_aa, len_na, chain1_num,
+ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 907 | chain2_num, TMave_mat, seqxA_mat, seqyA_mat, assign1_list, assign2_list,
+ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 908 | sequence, d0_scale, fast_opt, chainmap);
+ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/openstructure-2.9.2/modules/bindings/src/wrap_tmalign.cc:551:18: note: 'seqy' was declared here
+ 551 | char *seqx, *seqy; // for the protein sequence
+ | ^~~~
+[ 34%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/molck.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/molck.cc.o -MF CMakeFiles/ost_mol_alg.dir/molck.cc.o.d -o CMakeFiles/ost_mol_alg.dir/molck.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/molck.cc
+In file included from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38,
+ from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/entity.hh:41,
+ from /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color_ops/by_chain_color_op.cc:23:
+/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/gfx_object.hh:62:16: warning: 'virtual void ost::gfx::GfxObj::Apply(ost::gfx::GfxNodeVisitor&, ost::gfx::GfxNodeVisitor::Stack)' was hidden [-Woverloaded-virtual=]
+ 62 | virtual void Apply(GfxNodeVisitor& v, GfxNodeVisitor::Stack st);
+ | ^~~~~
+/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/entity.hh:294:8: note: by 'ost::gfx::Entity::Apply'
+ 294 | void Apply(const gfx::MapHandleColorOp& op, bool store=true);
+ | ^~~~~
In file included from /usr/include/c++/14/string:54,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
@@ -19705,6 +19728,8 @@
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
2107 | variant temp(rhs);
| ^~~~
+[ 34%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/find_membrane.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/find_membrane.cc.o -MF CMakeFiles/ost_mol_alg.dir/find_membrane.cc.o.d -o CMakeFiles/ost_mol_alg.dir/find_membrane.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/find_membrane.cc
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:904:15,
inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
@@ -19874,15 +19899,6 @@
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
2107 | variant temp(rhs);
| ^~~~
-In file included from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38,
- from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/entity.hh:41,
- from /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color_ops/by_chain_color_op.cc:23:
-/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/gfx_object.hh:62:16: warning: 'virtual void ost::gfx::GfxObj::Apply(ost::gfx::GfxNodeVisitor&, ost::gfx::GfxNodeVisitor::Stack)' was hidden [-Woverloaded-virtual=]
- 62 | virtual void Apply(GfxNodeVisitor& v, GfxNodeVisitor::Stack st);
- | ^~~~~
-/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/entity.hh:294:8: note: by 'ost::gfx::Entity::Apply'
- 294 | void Apply(const gfx::MapHandleColorOp& op, bool store=true);
- | ^~~~~
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
@@ -20048,25 +20064,18 @@
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
2107 | variant temp(rhs);
| ^~~~
-In file included from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38,
- from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/entity.hh:41,
- from /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color_ops/by_element_color_op.cc:22:
-/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/gfx_object.hh:62:16: warning: 'virtual void ost::gfx::GfxObj::Apply(ost::gfx::GfxNodeVisitor&, ost::gfx::GfxNodeVisitor::Stack)' was hidden [-Woverloaded-virtual=]
- 62 | virtual void Apply(GfxNodeVisitor& v, GfxNodeVisitor::Stack st);
- | ^~~~~
-/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/entity.hh:294:8: note: by 'ost::gfx::Entity::Apply'
- 294 | void Apply(const gfx::MapHandleColorOp& op, bool store=true);
- | ^~~~~
+[ 34%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/basic_gradient_color_op.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/basic_gradient_color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/basic_gradient_color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/basic_gradient_color_op.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color_ops/basic_gradient_color_op.cc
+[ 34%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/gradient_level_color_op.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/gradient_level_color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/gradient_level_color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/gradient_level_color_op.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color_ops/gradient_level_color_op.cc
+[ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/entity_renderer.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/entity_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/entity_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/entity_renderer.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/entity_renderer.cc
+[ 35%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/entity_to_density.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/entity_to_density.cc.o -MF CMakeFiles/ost_mol_alg.dir/entity_to_density.cc.o.d -o CMakeFiles/ost_mol_alg.dir/entity_to_density.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/entity_to_density.cc
[ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/entity_detail.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/entity_detail.cc.o -MF CMakeFiles/ost_gfx.dir/impl/entity_detail.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/entity_detail.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/entity_detail.cc
[ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/cartoon_renderer.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/cartoon_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/cartoon_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/cartoon_renderer.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/cartoon_renderer.cc
-[ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/custom_renderer.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/custom_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/custom_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/custom_renderer.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/custom_renderer.cc
-[ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/cpk_renderer.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/cpk_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/cpk_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/cpk_renderer.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/cpk_renderer.cc
-[ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/debug_renderer.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/debug_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/debug_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/debug_renderer.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/debug_renderer.cc
In file included from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/surface.hh:32,
from /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color_ops/basic_gradient_color_op.cc:22:
/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/gfx_object.hh:62:16: warning: 'virtual void ost::gfx::GfxObj::Apply(ost::gfx::GfxNodeVisitor&, ost::gfx::GfxNodeVisitor::Stack)' was hidden [-Woverloaded-virtual=]
@@ -20075,18 +20084,54 @@
/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/surface.hh:102:8: note: by 'ost::gfx::Surface::Apply'
102 | void Apply(const gfx::MapHandleColorOp& op, bool store=true);
| ^~~~~
+[ 35%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/biounit.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/biounit.cc.o -MF CMakeFiles/ost_mol_alg.dir/biounit.cc.o.d -o CMakeFiles/ost_mol_alg.dir/biounit.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/biounit.cc
+make -f modules/info/pymod/CMakeFiles/_ost_info.dir/build.make modules/info/pymod/CMakeFiles/_ost_info.dir/depend
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/info/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/pymod/CMakeFiles/_ost_info.dir/DependInfo.cmake "--color="
+[ 35%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/gdt.cc.o
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/info/pymod/CMakeFiles/_ost_info.dir/build.make modules/info/pymod/CMakeFiles/_ost_info.dir/build
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/gdt.cc.o -MF CMakeFiles/ost_mol_alg.dir/gdt.cc.o.d -o CMakeFiles/ost_mol_alg.dir/gdt.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/gdt.cc
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 35%] Building CXX object modules/info/pymod/CMakeFiles/_ost_info.dir/wrap_info.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_info_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/pymod/CMakeFiles/_ost_info.dir/wrap_info.cc.o -MF CMakeFiles/_ost_info.dir/wrap_info.cc.o.d -o CMakeFiles/_ost_info.dir/wrap_info.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/info/pymod/wrap_info.cc
+[ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/custom_renderer.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/custom_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/custom_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/custom_renderer.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/custom_renderer.cc
+[ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/cpk_renderer.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/cpk_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/cpk_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/cpk_renderer.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/cpk_renderer.cc
+[ 35%] Linking CXX shared library ../../../stage/lib/libost_bindings.so
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_bindings.dir/link.txt --verbose=1
+/build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/gdt.cc: In function 'void {anonymous}::Superpose(Eigen::Matrix<double, -1, 3>&, Eigen::Matrix<double, -1, 3>&, Eigen::Matrix<double, 1, 3>&, Eigen::Matrix<double, 1, 3>&, Real&, Eigen::Matrix<double, 3, 3>&)':
+/build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/gdt.cc:169:22: warning: comparison of integer expressions of different signedness: 'uint' {aka 'unsigned int'} and 'Eigen::Index' {aka 'int'} [-Wsign-compare]
+ 169 | for (uint i = 0; i < pos_one.rows(); ++i) {
+ | ~~^~~~~~~~~~~~~~~~
+/build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/gdt.cc:175:22: warning: comparison of integer expressions of different signedness: 'uint' {aka 'unsigned int'} and 'Eigen::Index' {aka 'int'} [-Wsign-compare]
+ 175 | for (uint i = 0; i < pos_two.rows(); ++i) {
+ | ~~^~~~~~~~~~~~~~~~
+/build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/gdt.cc:182:22: warning: comparison of integer expressions of different signedness: 'uint' {aka 'unsigned int'} and 'Eigen::Index' {aka 'int'} [-Wsign-compare]
+ 182 | for (uint i = 0; i < pos_one.rows(); ++i){
+ | ~~^~~~~~~~~~~~~~~~
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/ost_bindings.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_bindings.so.2.9 -o ../../../stage/lib/libost_bindings.so.2.9.2 CMakeFiles/ost_bindings.dir/wrap_tmalign.cc.o -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib: ../../../stage/lib/libost_seq.so.2.9.2 ../../../stage/lib/libost_mol.so.2.9.2 ../../../stage/lib/libost_info.so.2.9.2 ../../../stage/lib/libost_base.so.2.9.2 ../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/i386-linux-gnu/libboost_iostreams.so.1.83.0
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_bindings.so.2.9.2 ../../../stage/lib/libost_bindings.so.2.9 ../../../stage/lib/libost_bindings.so
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 35%] Built target ost_bindings
+[ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/debug_renderer.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/debug_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/debug_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/debug_renderer.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/debug_renderer.cc
[ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/simple_renderer.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/simple_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/simple_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/simple_renderer.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/simple_renderer.cc
[ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/sline_renderer.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/sline_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/sline_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/sline_renderer.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/sline_renderer.cc
-[ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/line_trace_renderer.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/line_trace_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/line_trace_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/line_trace_renderer.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/line_trace_renderer.cc
-[ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/backbone_trace.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/backbone_trace.cc.o -MF CMakeFiles/ost_gfx.dir/impl/backbone_trace.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/backbone_trace.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/backbone_trace.cc
-[ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/connect_renderer_base.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/connect_renderer_base.cc.o -MF CMakeFiles/ost_gfx.dir/impl/connect_renderer_base.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/connect_renderer_base.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/connect_renderer_base.cc
-[ 36%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/trace_renderer_base.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/trace_renderer_base.cc.o -MF CMakeFiles/ost_gfx.dir/impl/trace_renderer_base.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/trace_renderer_base.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/trace_renderer_base.cc
+In file included from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38,
+ from /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/cpk_renderer.hh:24,
+ from /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/cpk_renderer.cc:19:
+/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/gfx_object.hh:62:16: warning: 'virtual void ost::gfx::GfxObj::Apply(ost::gfx::GfxNodeVisitor&, ost::gfx::GfxNodeVisitor::Stack)' was hidden [-Woverloaded-virtual=]
+ 62 | virtual void Apply(GfxNodeVisitor& v, GfxNodeVisitor::Stack st);
+ | ^~~~~
+In file included from /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/cpk_renderer.cc:23:
+/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/entity.hh:294:8: note: by 'ost::gfx::Entity::Apply'
+ 294 | void Apply(const gfx::MapHandleColorOp& op, bool store=true);
+ | ^~~~~
/build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/custom_renderer.cc: In member function 'void ost::gfx::impl::CustomRenderer::PrepareRendering(ost::gfx::impl::GfxView&, ost::gfx::IndexedVertexArray&, bool)':
/build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/custom_renderer.cc:67:25: warning: possibly dangling reference to a temporary [-Wdangling-reference]
67 | const geom::Vec3& p0=it->bond.GetFirst().GetPos();
@@ -20113,18 +20158,10 @@
/build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/custom_renderer.cc:94:53: note: the temporary was destroyed at the end of the full expression 'ost::mol::BondHandle::GetSecond() const().ost::mol::AtomHandle::ost::mol::AtomBase.ost::mol::AtomBase::GetPos()'
94 | const geom::Vec3& p2=it->bond.GetSecond().GetPos();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
-[ 36%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/mapped_property.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/mapped_property.cc.o -MF CMakeFiles/ost_gfx.dir/impl/mapped_property.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/mapped_property.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/mapped_property.cc
-In file included from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38,
- from /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/cpk_renderer.hh:24,
- from /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/cpk_renderer.cc:19:
-/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/gfx_object.hh:62:16: warning: 'virtual void ost::gfx::GfxObj::Apply(ost::gfx::GfxNodeVisitor&, ost::gfx::GfxNodeVisitor::Stack)' was hidden [-Woverloaded-virtual=]
- 62 | virtual void Apply(GfxNodeVisitor& v, GfxNodeVisitor::Stack st);
- | ^~~~~
-In file included from /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/cpk_renderer.cc:23:
-/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/entity.hh:294:8: note: by 'ost::gfx::Entity::Apply'
- 294 | void Apply(const gfx::MapHandleColorOp& op, bool store=true);
- | ^~~~~
+[ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/line_trace_renderer.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/line_trace_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/line_trace_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/line_trace_renderer.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/line_trace_renderer.cc
+[ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/backbone_trace.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/backbone_trace.cc.o -MF CMakeFiles/ost_gfx.dir/impl/backbone_trace.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/backbone_trace.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/backbone_trace.cc
In file included from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38,
from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/entity.hh:41,
from /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/simple_renderer.cc:26:
@@ -20160,10 +20197,14 @@
/build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/simple_renderer.cc:204:53: note: the temporary was destroyed at the end of the full expression 'ost::mol::BondHandle::GetSecond() const().ost::mol::AtomHandle::ost::mol::AtomBase.ost::mol::AtomBase::GetPos()'
204 | const geom::Vec3& p2=it->bond.GetSecond().GetPos();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
+[ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/connect_renderer_base.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/connect_renderer_base.cc.o -MF CMakeFiles/ost_gfx.dir/impl/connect_renderer_base.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/connect_renderer_base.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/connect_renderer_base.cc
+[ 36%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/trace_renderer_base.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/trace_renderer_base.cc.o -MF CMakeFiles/ost_gfx.dir/impl/trace_renderer_base.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/trace_renderer_base.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/trace_renderer_base.cc
+[ 36%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/mapped_property.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/mapped_property.cc.o -MF CMakeFiles/ost_gfx.dir/impl/mapped_property.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/mapped_property.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/mapped_property.cc
[ 36%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/tabulated_trig.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/tabulated_trig.cc.o -MF CMakeFiles/ost_gfx.dir/impl/tabulated_trig.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/tabulated_trig.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/tabulated_trig.cc
-[ 36%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/trace_renderer.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/trace_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/trace_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/trace_renderer.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/trace_renderer.cc
In file included from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/gfx_object_base.hh:34,
from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/gfx_object.hh:40,
from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/gfx.hh:26,
@@ -20176,11 +20217,13 @@
/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/gfx_object.hh:58:16: note: by 'virtual void ost::gfx::GfxObj::DeepSwap(ost::gfx::GfxObj&)'
58 | virtual void DeepSwap(GfxObj& go);
| ^~~~~~~~
+[ 36%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/trace_renderer.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/trace_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/trace_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/trace_renderer.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/trace_renderer.cc
+[ 36%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/line_render_options.cc.o
[ 36%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/fast_spheres.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/fast_spheres.cc.o -MF CMakeFiles/ost_gfx.dir/impl/fast_spheres.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/fast_spheres.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/fast_spheres.cc
[ 36%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/render_options.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/fast_spheres.cc.o -MF CMakeFiles/ost_gfx.dir/impl/fast_spheres.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/fast_spheres.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/fast_spheres.cc
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/render_options.cc.o -MF CMakeFiles/ost_gfx.dir/render_options/render_options.cc.o.d -o CMakeFiles/ost_gfx.dir/render_options/render_options.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/render_options/render_options.cc
-[ 36%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/line_render_options.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/line_render_options.cc.o -MF CMakeFiles/ost_gfx.dir/render_options/line_render_options.cc.o.d -o CMakeFiles/ost_gfx.dir/render_options/line_render_options.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/render_options/line_render_options.cc
[ 36%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/custom_render_options.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/custom_render_options.cc.o -MF CMakeFiles/ost_gfx.dir/render_options/custom_render_options.cc.o.d -o CMakeFiles/ost_gfx.dir/render_options/custom_render_options.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/render_options/custom_render_options.cc
@@ -20233,6 +20276,8 @@
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
2107 | variant temp(rhs);
| ^~~~
+[ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/map_handle_color_op.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/map_handle_color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/map_handle_color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/map_handle_color_op.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color_ops/map_handle_color_op.cc
In file included from /usr/include/c++/14/ios:42:
In static member function 'static constexpr void std::char_traits<char>::assign(char_type&, const char_type&)',
inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:433:23,
@@ -20332,8 +20377,6 @@
/build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/find_membrane.cc:697:29: note: 'best_lm_parameters.Eigen::Matrix<float, 4, 1, 0, 4, 1>::<unnamed>.Eigen::PlainObjectBase<Eigen::Matrix<float, 4, 1, 0, 4, 1> >::m_storage.Eigen::DenseStorage<float, 4, 4, 1, 0>::m_data.Eigen::internal::plain_array<float, 4, 0, 16>::array[3]' was declared here
697 | Eigen::Matrix<Real, 4, 1> best_lm_parameters;
| ^~~~~~~~~~~~~~~~~~
-[ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/map_handle_color_op.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/map_handle_color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/map_handle_color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/map_handle_color_op.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color_ops/map_handle_color_op.cc
[ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/map_iso.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/map_iso.cc.o -MF CMakeFiles/ost_gfx.dir/map_iso.cc.o.d -o CMakeFiles/ost_gfx.dir/map_iso.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/map_iso.cc
[ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/map_slab.cc.o
@@ -20348,203 +20391,56 @@
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/map_octree.cc.o -MF CMakeFiles/ost_gfx.dir/impl/map_octree.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/map_octree.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/map_octree.cc
[ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/octree_isocont.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/octree_isocont.cc.o -MF CMakeFiles/ost_gfx.dir/impl/octree_isocont.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/octree_isocont.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/octree_isocont.cc
-[ 39%] Linking CXX shared module ../../../stage/lib/python3.13/dist-packages/ost/info/_ost_info.so
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_info.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_ost_info.dir/link.d -Wl,-z,relro -shared -o ../../../stage/lib/python3.13/dist-packages/ost/info/_ost_info.so CMakeFiles/_ost_info.dir/wrap_info.cc.o -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib: ../../../stage/lib/libost_info.so.2.9.2 /usr/lib/i386-linux-gnu/libpython3.13.so /usr/lib/i386-linux-gnu/libboost_python313.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15 ../../../stage/lib/libost_base.so.2.9.2 ../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/info/pymod/__init__.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/info/./__init__.pyc\",\"__init__.py\",doraise=True)"
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
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-make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
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-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_data_algorithm.cc.o -MF CMakeFiles/_ost_img.dir/export_data_algorithm.cc.o.d -o CMakeFiles/_ost_img.dir/export_data_algorithm.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/pymod/export_data_algorithm.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_atom_view.cc.o -MF CMakeFiles/_ost_mol.dir/export_atom_view.cc.o.d -o CMakeFiles/_ost_mol.dir/export_atom_view.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod/export_atom_view.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_chain.cc.o -MF CMakeFiles/_ost_mol.dir/export_chain.cc.o.d -o CMakeFiles/_ost_mol.dir/export_chain.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod/export_chain.cc
-[ 39%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_data.cc.o
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-[ 39%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_bond.cc.o
-[ 39%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_image_handle.cc.o
-[ 39%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_extent.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_atom.cc.o -MF CMakeFiles/_ost_mol.dir/export_atom.cc.o.d -o CMakeFiles/_ost_mol.dir/export_atom.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod/export_atom.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_bond.cc.o -MF CMakeFiles/_ost_mol.dir/export_bond.cc.o.d -o CMakeFiles/_ost_mol.dir/export_bond.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod/export_bond.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_image_handle.cc.o -MF CMakeFiles/_ost_img.dir/export_image_handle.cc.o.d -o CMakeFiles/_ost_img.dir/export_image_handle.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/pymod/export_image_handle.cc
-[ 40%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_peak.cc.o
-[ 40%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_point.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_data.cc.o -MF CMakeFiles/_ost_img.dir/export_data.cc.o.d -o CMakeFiles/_ost_img.dir/export_data.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/pymod/export_data.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_extent.cc.o -MF CMakeFiles/_ost_img.dir/export_extent.cc.o.d -o CMakeFiles/_ost_img.dir/export_extent.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/pymod/export_extent.cc
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-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_peak.cc.o -MF CMakeFiles/_ost_img.dir/export_peak.cc.o.d -o CMakeFiles/_ost_img.dir/export_peak.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/pymod/export_peak.cc
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-[ 41%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_coord_group.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_chain_view.cc.o -MF CMakeFiles/_ost_mol.dir/export_chain_view.cc.o.d -o CMakeFiles/_ost_mol.dir/export_chain_view.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod/export_chain_view.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_phase.cc.o -MF CMakeFiles/_ost_img.dir/export_phase.cc.o.d -o CMakeFiles/_ost_img.dir/export_phase.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/pymod/export_phase.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_coord_group.cc.o -MF CMakeFiles/_ost_mol.dir/export_coord_group.cc.o.d -o CMakeFiles/_ost_mol.dir/export_coord_group.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod/export_coord_group.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_point.cc.o -MF CMakeFiles/_ost_img.dir/export_point.cc.o.d -o CMakeFiles/_ost_img.dir/export_point.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/pymod/export_point.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_coord_frame.cc.o -MF CMakeFiles/_ost_mol.dir/export_coord_frame.cc.o.d -o CMakeFiles/_ost_mol.dir/export_coord_frame.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod/export_coord_frame.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_progress.cc.o -MF CMakeFiles/_ost_img.dir/export_progress.cc.o.d -o CMakeFiles/_ost_img.dir/export_progress.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/pymod/export_progress.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_raster_image.cc.o -MF CMakeFiles/_ost_img.dir/export_raster_image.cc.o.d -o CMakeFiles/_ost_img.dir/export_raster_image.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/pymod/export_raster_image.cc
-[ 41%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_size.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_size.cc.o -MF CMakeFiles/_ost_img.dir/export_size.cc.o.d -o CMakeFiles/_ost_img.dir/export_size.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/pymod/export_size.cc
-[ 41%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_editors.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_editors.cc.o -MF CMakeFiles/_ost_mol.dir/export_editors.cc.o.d -o CMakeFiles/_ost_mol.dir/export_editors.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod/export_editors.cc
-In file included from /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/domain_find.cc:11:
-In member function 'void ost::mol::alg::AdjacencyBitmap::set(size_t, size_t, bool, bool)',
- inlined from 'ost::mol::alg::AdjacencyBitmap::AdjacencyBitmap(const ost::mol::alg::DistanceMatrix&, const ost::mol::alg::DistanceMatrix&, Real, Real, int, int)' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/adjacency_bitmap.hh:49:16,
- inlined from 'static ost::mol::alg::DomainsPtr ost::mol::alg::Domains::FromDistMats(const ost::mol::alg::DistanceMatrix&, const ost::mol::alg::DistanceMatrix&, Real, Real, Real, int, bool, bool)' at /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/domain_find.cc:363:37:
-/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/adjacency_bitmap.hh:109:23: warning: '*(uint64_t*)<unknown>' may be used uninitialized [-Wmaybe-uninitialized]
- 109 | data_[byte_index] &= ~(one << bit_index);
- | ~~~~~~~~~~~~~~~~^
-[ 41%] Linking CXX shared library ../../../stage/lib/libost_gfx.so
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/test_texture.png /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/share/openstructure/textures/test_texture.png
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/glyph_texture.png /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/share/openstructure/textures/glyph_texture.png
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_gfx.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/ost_gfx.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_gfx.so.2.9 -o ../../../stage/lib/libost_gfx.so.2.9.2 CMakeFiles/ost_gfx.dir/bitmap_io.cc.o CMakeFiles/ost_gfx.dir/exporter.cc.o CMakeFiles/ost_gfx.dir/collada_exporter.cc.o CMakeFiles/ost_gfx.dir/color.cc.o CMakeFiles/ost_gfx.dir/primitives.cc.o CMakeFiles/ost_gfx.dir/entity.cc.o CMakeFiles/ost_gfx.dir/symmetry_node.cc.o CMakeFiles/ost_gfx.dir/gfx_node.cc.o CMakeFiles/ost_gfx.dir/gfx_object.cc.o CMakeFiles/ost_gfx.dir/gfx_prim.cc.o CMakeFiles/ost_gfx.dir/gfx_test_object.cc.o CMakeFiles/ost_gfx.dir/input.cc.o CMakeFiles/ost_gfx.dir/prim_list.cc.o CMakeFiles/ost_gfx.dir/scene.cc.o CMakeFiles/ost_gfx.dir/selection.cc.o CMakeFiles/ost_gfx.dir/surface.cc.o CMakeFiles/ost_gfx.dir/gradient.cc.o CMakeFiles/ost_gfx.dir/gradient_manager.cc.o CMakeFiles/ost_gfx.dir/vertex_array.cc.o CMakeFiles/ost_gfx.dir/vertex_array_helper.cc.o CMakeFiles/ost_gfx.dir/material.cc.o CMakeFiles/ost_gfx.dir/povray.cc.o CMakeFiles/ost_gfx.dir/gost_exporter.cc.o CMakeFiles/ost_gfx.dir/texture.cc.o CMakeFiles/ost_gfx.dir/color_ops/color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/by_element_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/by_chain_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/uniform_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/gradient_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/entity_view_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/basic_gradient_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/gradient_level_color_op.cc.o CMakeFiles/ost_gfx.dir/impl/entity_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/entity_detail.cc.o CMakeFiles/ost_gfx.dir/impl/cartoon_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/custom_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/cpk_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/debug_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/simple_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/sline_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/line_trace_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/backbone_trace.cc.o CMakeFiles/ost_gfx.dir/impl/connect_renderer_base.cc.o CMakeFiles/ost_gfx.dir/impl/trace_renderer_base.cc.o CMakeFiles/ost_gfx.dir/impl/mapped_property.cc.o CMakeFiles/ost_gfx.dir/impl/tabulated_trig.cc.o CMakeFiles/ost_gfx.dir/impl/trace_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/fast_spheres.cc.o CMakeFiles/ost_gfx.dir/render_options/render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/line_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/custom_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/cpk_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/simple_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/sline_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/line_trace_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/cartoon_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/trace_render_options.cc.o CMakeFiles/ost_gfx.dir/color_ops/map_handle_color_op.cc.o CMakeFiles/ost_gfx.dir/map_iso.cc.o CMakeFiles/ost_gfx.dir/map_slab.cc.o CMakeFiles/ost_gfx.dir/impl/map_iso_gen.cc.o CMakeFiles/ost_gfx.dir/impl/map_iso_gen_s.cc.o CMakeFiles/ost_gfx.dir/impl/map_iso_gen_o.cc.o CMakeFiles/ost_gfx.dir/impl/map_octree.cc.o CMakeFiles/ost_gfx.dir/impl/octree_isocont.cc.o -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib: ../../../stage/lib/libost_conop.so.2.9.2 ../../../stage/lib/libost_img_alg.so.2.9.2 /usr/lib/i386-linux-gnu/libOpenGL.so /usr/lib/i386-linux-gnu/libGLX.so /usr/lib/i386-linux-gnu/libGLU.so /usr/lib/i386-linux-gnu/libpng.so /usr/lib/i386-linux-gnu/libz.so ../../../stage/lib/libost_db.so.2.9.2 ../../../stage/lib/libost_seq.so.2.9.2 ../../../stage/lib/libost_mol.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/i386-linu[ 41%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_mask.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_mask.cc.o -MF CMakeFiles/_ost_img.dir/export_mask.cc.o.d -o CMakeFiles/_ost_img.dir/export_mask.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/pymod/export_mask.cc
-x-gnu/libsqlite3.so ../../../stage/lib/libost_img.so.2.9.2 ../../../stage/lib/libost_info.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15 ../../../stage/lib/libost_base.so.2.9.2 ../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libfftw3f_threads.so
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_gfx.so.2.9.2 ../../../stage/lib/libost_gfx.so.2.9 ../../../stage/lib/libost_gfx.so
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 41%] Built target ost_gfx
-[ 41%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_image_list.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_image_list.cc.o -MF CMakeFiles/_ost_img.dir/export_image_list.cc.o.d -o CMakeFiles/_ost_img.dir/export_image_list.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/pymod/export_image_list.cc
-[ 41%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_map.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_map.cc.o -MF CMakeFiles/_ost_img.dir/export_map.cc.o.d -o CMakeFiles/_ost_img.dir/export_map.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/pymod/export_map.cc
-[ 41%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_entity.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_entity.cc.o -MF CMakeFiles/_ost_mol.dir/export_entity.cc.o.d -o CMakeFiles/_ost_mol.dir/export_entity.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod/export_entity.cc
-[ 41%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_entity_view.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_entity_view.cc.o -MF CMakeFiles/_ost_mol.dir/export_entity_view.cc.o.d -o CMakeFiles/_ost_mol.dir/export_entity_view.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod/export_entity_view.cc
-[ 41%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_property_id.cc.o
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-[ 41%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_query.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_query.cc.o -MF CMakeFiles/_ost_mol.dir/export_query.cc.o.d -o CMakeFiles/_ost_mol.dir/export_query.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod/export_query.cc
-[ 41%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_residue.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_residue.cc.o -MF CMakeFiles/_ost_mol.dir/export_residue.cc.o.d -o CMakeFiles/_ost_mol.dir/export_residue.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod/export_residue.cc
-[ 41%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/wrap_img.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/wrap_img.cc.o -MF CMakeFiles/_ost_img.dir/wrap_img.cc.o.d -o CMakeFiles/_ost_img.dir/wrap_img.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/pymod/wrap_img.cc
-[ 41%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_residue_view.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_residue_view.cc.o -MF CMakeFiles/_ost_mol.dir/export_residue_view.cc.o.d -o CMakeFiles/_ost_mol.dir/export_residue_view.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod/export_residue_view.cc
-[ 41%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_surface.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_surface.cc.o -MF CMakeFiles/_ost_mol.dir/export_surface.cc.o.d -o CMakeFiles/_ost_mol.dir/export_surface.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod/export_surface.cc
-[ 41%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_bounding_box.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_bounding_box.cc.o -MF CMakeFiles/_ost_mol.dir/export_bounding_box.cc.o.d -o CMakeFiles/_ost_mol.dir/export_bounding_box.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod/export_bounding_box.cc
-[ 41%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_query_view_wrapper.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_query_view_wrapper.cc.o -MF CMakeFiles/_ost_mol.dir/export_query_view_wrapper.cc.o.d -o CMakeFiles/_ost_mol.dir/export_query_view_wrapper.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod/export_query_view_wrapper.cc
-[ 43%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_torsion.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_torsion.cc.o -MF CMakeFiles/_ost_mol.dir/export_torsion.cc.o.d -o CMakeFiles/_ost_mol.dir/export_torsion.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod/export_torsion.cc
-[ 43%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_visitor.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_visitor.cc.o -MF CMakeFiles/_ost_mol.dir/export_visitor.cc.o.d -o CMakeFiles/_ost_mol.dir/export_visitor.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod/export_visitor.cc
-[ 43%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/wrap_mol.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/wrap_mol.cc.o -MF CMakeFiles/_ost_mol.dir/wrap_mol.cc.o.d -o CMakeFiles/_ost_mol.dir/wrap_mol.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod/wrap_mol.cc
-[ 43%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_entity_property_mapper.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_entity_property_mapper.cc.o -MF CMakeFiles/_ost_mol.dir/export_entity_property_mapper.cc.o.d -o CMakeFiles/_ost_mol.dir/export_entity_property_mapper.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod/export_entity_property_mapper.cc
-[ 43%] Linking CXX shared module ../../../../stage/lib/python3.13/dist-packages/ost/img/_ost_img.so
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_img.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_ost_img.dir/link.d -Wl,-z,relro -shared -o ../../../../stage/lib/python3.13/dist-packages/ost/img/_ost_img.so CMakeFiles/_ost_img.dir/export_data.cc.o CMakeFiles/_ost_img.dir/export_data_algorithm.cc.o CMakeFiles/_ost_img.dir/export_extent.cc.o CMakeFiles/_ost_img.dir/export_image_handle.cc.o CMakeFiles/_ost_img.dir/export_peak.cc.o CMakeFiles/_ost_img.dir/export_phase.cc.o CMakeFiles/_ost_img.dir/export_point.cc.o CMakeFiles/_ost_img.dir/export_progress.cc.o CMakeFiles/_ost_img.dir/export_raster_image.cc.o CMakeFiles/_ost_img.dir/export_size.cc.o CMakeFiles/_ost_img.dir/export_mask.cc.o CMakeFiles/_ost_img.dir/export_image_list.cc.o CMakeFiles/_ost_img.dir/export_map.cc.o CMakeFiles/_ost_img.dir/wrap_img.cc.o -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib: ../../../../stage/lib/libost_img.so.2.9.2 /usr/lib/i386-linux-gnu/libpython3.13.so /usr/lib/i386-linux-gnu/libboost_python313.so.1.83.0 ../../../../stage/lib/libost_info.so.2.9.2 ../../../../stage/lib/libost_base.so.2.9.2 ../../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/img/base/pymod/__init__.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/img/./__init__.pyc\",\"__init__.py\",doraise=True)"
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
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-[ 44%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/wrap_alg.cc.o
-[ 44%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_transcendentals.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/wrap_alg.cc.o -MF CMakeFiles/_ost_img_alg.dir/wrap_alg.cc.o.d -o CMakeFiles/_ost_img_alg.dir/wrap_alg.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/pymod/wrap_alg.cc
-[ 44%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_polar.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_transcendentals.cc.o -MF CMakeFiles/_ost_img_alg.dir/export_transcendentals.cc.o.d -o CMakeFiles/_ost_img_alg.dir/export_transcendentals.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/pymod/export_transcendentals.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_polar.cc.o -MF CMakeFiles/_ost_img_alg.dir/export_polar.cc.o.d -o CMakeFiles/_ost_img_alg.dir/export_polar.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/pymod/export_polar.cc
-[ 44%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_normalizer.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_normalizer.cc.o -MF CMakeFiles/_ost_img_alg.dir/export_normalizer.cc.o.d -o CMakeFiles/_ost_img_alg.dir/export_normalizer.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/pymod/export_normalizer.cc
-[ 44%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_filter.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_filter.cc.o -MF CMakeFiles/_ost_img_alg.dir/export_filter.cc.o.d -o CMakeFiles/_ost_img_alg.dir/export_filter.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/pymod/export_filter.cc
-[ 44%] Linking CXX shared module ../../../../stage/lib/python3.13/dist-packages/ost/img/alg/_ost_img_alg.so
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_img_alg.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_ost_img_alg.dir/link.d -Wl,-z,relro -shared -o ../../../../stage/lib/python3.13/dist-packages/ost/img/alg/_ost_img_alg.so CMakeFiles/_ost_img_alg.dir/wrap_alg.cc.o CMakeFiles/_ost_img_alg.dir/export_filter.cc.o CMakeFiles/_ost_img_alg.dir/export_normalizer.cc.o CMakeFiles/_ost_img_alg.dir/export_transcendentals.cc.o CMakeFiles/_ost_img_alg.dir/export_polar.cc.o -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib: ../../../../stage/lib/libost_img_alg.so.2.9.2 /usr/lib/i386-linux-gnu/libpython3.13.so /usr/lib/i386-linux-gnu/libboost_python313.so.1.83.0 /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_img.so.2.9.2 ../../../../stage/lib/libost_info.so.2.9.2 ../../../../stage/lib/libost_base.so.2.9.2 ../../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/img/alg/pymod/__init__.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/img/alg/./__init__.pyc\",\"__init__.py\",doraise=True)"
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 44%] Built target _ost_img_alg
-[ 44%] Linking CXX shared library ../../../../stage/lib/libost_mol_alg.so
+[ 39%] Linking CXX shared library ../../../../stage/lib/libost_mol_alg.so
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/atom_scattering_properties.txt /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/share/openstructure/atom_scattering_properties.txt
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/stereo_chemical_props.txt /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/share/openstructure/stereo_chemical_props.txt
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_mol_alg.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/ost_mol_alg.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_mol_alg.so.2.9 -o ../../../../stage/lib/libost_mol_alg.so.2.9.2 CMakeFiles/ost_mol_alg.dir/svd_superpose.cc.o CMakeFiles/ost_mol_alg.dir/clash_score.cc.o CMakeFiles/ost_mol_alg.dir/sec_structure_segments.cc.o CMakeFiles/ost_mol_alg.dir/local_dist_diff_test.cc.o CMakeFiles/ost_mol_alg.dir/distance_test_common.cc.o CMakeFiles/ost_mol_alg.dir/distance_rmsd_test.cc.o CMakeFiles/ost_mol_alg.dir/superpose_frames.cc.o CMakeFiles/ost_mol_alg.dir/filter_clashes.cc.o CMakeFiles/ost_mol_alg.dir/construct_cbeta.cc.o CMakeFiles/ost_mol_alg.dir/trajectory_analysis.cc.o CMakeFiles/ost_mol_alg.dir/structure_analysis.cc.o CMakeFiles/ost_mol_alg.dir/consistency_checks.cc.o CMakeFiles/ost_mol_alg.dir/pdbize.cc.o CMakeFiles/ost_mol_alg.dir/adjacency_bitmap.cc.o CMakeFiles/ost_mol_alg.dir/contact_overlap.cc.o CMakeFiles/ost_mol_alg.dir/domain_find.cc.o CMakeFiles/ost_mol_alg.dir/similarity_matrix.cc.o CMakeFiles/ost_mol_alg.dir/accessibility.cc.o CMakeFiles/ost_mol_alg.dir/sec_struct.cc.o CMakeFiles/ost_mol_alg.dir/nonstandard.cc.o CMakeFiles/ost_mol_alg.dir/molck.cc.o CMakeFiles/ost_mol_alg.dir/find_membrane.cc.o CMakeFiles/ost_mol_alg.dir/entity_to_density.cc.o CMakeFiles/ost_mol_alg.dir/biounit.cc.o CMakeFiles/ost_mol_alg.dir/gdt.cc.o -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib: /usr/lib/i386-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_thread.so.1.83.0 ../../../../stage/lib/libost_img_alg.so.2.9.2 ../../../../stage/lib/libost_seq_alg.so.2.9.2 ../../../../stage/lib/libost_conop.so.2.9.2 ../../../../stage/lib/libost_img.so.2.9.2 /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_db.so.2.9.2 ../../../../stage/lib/libost_seq.so.2.9.2 ../../../../stage/lib/libost_mol.so.2.9.2 ../../../../stage/lib/libost_info.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/i386-linux-gnu/libboost_iostreams.so.1.83.0 ../../../../stage/lib/libost_base.so.2.9.2 ../../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libsqlite3.so
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_mol_alg.so.2.9.2 ../../../../stage/lib/libost_mol_alg.so.2.9 ../../../../stage/lib/libost_mol_alg.so
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 44%] Built target ost_mol_alg
+[ 39%] Built target ost_mol_alg
make -f modules/io/src/CMakeFiles/ost_io.dir/build.make modules/io/src/CMakeFiles/ost_io.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/io/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src/CMakeFiles/ost_io.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make -f modules/io/src/CMakeFiles/ost_io.dir/build.make modules/io/src/CMakeFiles/ost_io.dir/build
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-[ 44%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/io_manager.cc.o
+[ 39%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/convert.cc.o
+[ 39%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/io_manager.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/io_manager.cc.o -MF CMakeFiles/ost_io.dir/io_manager.cc.o.d -o CMakeFiles/ost_io.dir/io_manager.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/io_manager.cc
-[ 44%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_pdb_handler.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_pdb_handler.cc.o -MF CMakeFiles/ost_io.dir/mol/entity_io_pdb_handler.cc.o.d -o CMakeFiles/ost_io.dir/mol/entity_io_pdb_handler.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_pdb_handler.cc
-[ 44%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/convert.cc.o
-[ 45%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/io_utils.cc.o
-[ 45%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_crd_handler.cc.o
-[ 45%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_pqr_handler.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/convert.cc.o -MF CMakeFiles/ost_io.dir/convert.cc.o.d -o CMakeFiles/ost_io.dir/convert.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/convert.cc
-[ 45%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_mae_handler.cc.o
-[ 45%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/pdb_reader.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/io_utils.cc.o -MF CMakeFiles/ost_io.dir/io_utils.cc.o.d -o CMakeFiles/ost_io.dir/io_utils.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/io_utils.cc
-[ 45%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/pdb_writer.cc.o
+[ 39%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_crd_handler.cc.o
+[ 39%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_mae_handler.cc.o
+[ 39%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_pqr_handler.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_crd_handler.cc.o -MF CMakeFiles/ost_io.dir/mol/entity_io_crd_handler.cc.o.d -o CMakeFiles/ost_io.dir/mol/entity_io_crd_handler.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_crd_handler.cc
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_pqr_handler.cc.o -MF CMakeFiles/ost_io.dir/mol/entity_io_pqr_handler.cc.o.d -o CMakeFiles/ost_io.dir/mol/entity_io_pqr_handler.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_pqr_handler.cc
-[ 45%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_sdf_handler.cc.o
-[ 45%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_mmcif_handler.cc.o
-[ 45%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/sdf_reader.cc.o
-[ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/load_entity.cc.o
-[ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/sdf_writer.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_mae_handler.cc.o -MF CMakeFiles/ost_io.dir/mol/entity_io_mae_handler.cc.o.d -o CMakeFiles/ost_io.dir/mol/entity_io_mae_handler.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_mae_handler.cc
-[ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/save_entity.cc.o
+[ 39%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/pdb_reader.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/pdb_reader.cc.o -MF CMakeFiles/ost_io.dir/mol/pdb_reader.cc.o.d -o CMakeFiles/ost_io.dir/mol/pdb_reader.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/pdb_reader.cc
-[ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/surface_io_msms_handler.cc.o
+[ 40%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/io_utils.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/io_utils.cc.o -MF CMakeFiles/ost_io.dir/io_utils.cc.o.d -o CMakeFiles/ost_io.dir/io_utils.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/io_utils.cc
+[ 40%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_pdb_handler.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_pdb_handler.cc.o -MF CMakeFiles/ost_io.dir/mol/entity_io_pdb_handler.cc.o.d -o CMakeFiles/ost_io.dir/mol/entity_io_pdb_handler.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_pdb_handler.cc
+[ 40%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/pdb_writer.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/pdb_writer.cc.o -MF CMakeFiles/ost_io.dir/mol/pdb_writer.cc.o.d -o CMakeFiles/ost_io.dir/mol/pdb_writer.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/pdb_writer.cc
-[ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/load_surface.cc.o
+[ 40%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_sdf_handler.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_sdf_handler.cc.o -MF CMakeFiles/ost_io.dir/mol/entity_io_sdf_handler.cc.o.d -o CMakeFiles/ost_io.dir/mol/entity_io_sdf_handler.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_sdf_handler.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_mmcif_handler.cc.o -MF CMakeFiles/ost_io.dir/mol/entity_io_mmcif_handler.cc.o.d -o CMakeFiles/ost_io.dir/mol/entity_io_mmcif_handler.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_mmcif_handler.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/sdf_reader.cc.o -MF CMakeFiles/ost_io.dir/mol/sdf_reader.cc.o.d -o CMakeFiles/ost_io.dir/mol/sdf_reader.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/sdf_reader.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/sdf_writer.cc.o -MF CMakeFiles/ost_io.dir/mol/sdf_writer.cc.o.d -o CMakeFiles/ost_io.dir/mol/sdf_writer.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/sdf_writer.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/save_entity.cc.o -MF CMakeFiles/ost_io.dir/mol/save_entity.cc.o.d -o CMakeFiles/ost_io.dir/mol/save_entity.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/save_entity.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/load_entity.cc.o -MF CMakeFiles/ost_io.dir/mol/load_entity.cc.o.d -o CMakeFiles/ost_io.dir/mol/load_entity.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/load_entity.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/surface_io_msms_handler.cc.o -MF CMakeFiles/ost_io.dir/mol/surface_io_msms_handler.cc.o.d -o CMakeFiles/ost_io.dir/mol/surface_io_msms_handler.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/surface_io_msms_handler.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/load_surface.cc.o -MF CMakeFiles/ost_io.dir/mol/load_surface.cc.o.d -o CMakeFiles/ost_io.dir/mol/load_surface.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/load_surface.cc
-[ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/chemdict_parser.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/chemdict_parser.cc.o -MF CMakeFiles/ost_io.dir/mol/chemdict_parser.cc.o.d -o CMakeFiles/ost_io.dir/mol/chemdict_parser.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/chemdict_parser.cc
-/build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/surface_io_msms_handler.cc: In function 'std::pair<boost::filesystem::path, boost::filesystem::path> ost::io::{anonymous}::detect_files(const boost::filesystem::path&)':
-/build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/surface_io_msms_handler.cc:36:45: warning: 'boost::filesystem::path boost::filesystem::change_extension(const path&, const path&)' is deprecated: Use path::replace_extension() instead [-Wdeprecated-declarations]
- 36 | return std::make_pair(bf::change_extension(loc, ".vert"),
- | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
-In file included from /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/surface_io_msms_handler.cc:25:
-/usr/include/boost/filesystem/convenience.hpp:41:13: note: declared here
- 41 | inline path change_extension(const path& p, const path& new_extension)
- | ^~~~~~~~~~~~~~~~
-/build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/surface_io_msms_handler.cc:37:45: warning: 'boost::filesystem::path boost::filesystem::change_extension(const path&, const path&)' is deprecated: Use path::replace_extension() instead [-Wdeprecated-declarations]
- 37 | bf::change_extension(loc, ".face"));
- | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
-/usr/include/boost/filesystem/convenience.hpp:41:13: note: declared here
- 41 | inline path change_extension(const path& p, const path& new_extension)
- | ^~~~~~~~~~~~~~~~
-[ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/io_profile.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/io_profile.cc.o -MF CMakeFiles/ost_io.dir/mol/io_profile.cc.o.d -o CMakeFiles/ost_io.dir/mol/io_profile.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/io_profile.cc
+/build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_pqr_handler.cc: In constructor 'ost::io::PQRReader::PQRReader(const boost::filesystem::path&)':
+/build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_pqr_handler.cc:61:57: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations]
+ 61 | if (boost::iequals(".gz", boost::filesystem::extension(loc))) {
+ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
+In file included from /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_pqr_handler.cc:28:
+/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here
+ 29 | inline std::string extension(const path& p)
+ | ^~~~~~~~~
+/build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_pdb_handler.cc: In member function 'virtual void ost::io::EntityIOPDBHandler::Export(const ost::mol::EntityView&, const boost::filesystem::path&) const':
+/build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_pdb_handler.cc:52:50: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations]
+ 52 | if (boost::iequals(boost::filesystem::extension(loc), ".pqr")) {
+ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
+In file included from /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_pdb_handler.cc:27:
+/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here
+ 29 | inline std::string extension(const path& p)
+ | ^~~~~~~~~
/build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_crd_handler.cc: In constructor 'ost::io::CRDReader::CRDReader(const boost::filesystem::path&)':
/build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_crd_handler.cc:63:57: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations]
63 | if (boost::iequals(".gz", boost::filesystem::extension(loc))) {
@@ -20553,19 +20449,25 @@
/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here
29 | inline std::string extension(const path& p)
| ^~~~~~~~~
-/build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/sdf_reader.cc: In member function 'void ost::io::SDFReader::ClearState(const boost::filesystem::path&)':
-/build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/sdf_reader.cc:125:57: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations]
- 125 | if (boost::iequals(".gz", boost::filesystem::extension(loc))) {
+/build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/pdb_reader.cc: In member function 'void ost::io::PDBReader::Init(const boost::filesystem::path&)':
+/build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/pdb_reader.cc:91:57: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations]
+ 91 | if (boost::iequals(".gz", boost::filesystem::extension(loc))) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
-In file included from /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/sdf_reader.cc:24:
+In file included from /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/pdb_reader.cc:20:
/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here
29 | inline std::string extension(const path& p)
| ^~~~~~~~~
-/build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_pdb_handler.cc: In member function 'virtual void ost::io::EntityIOPDBHandler::Export(const ost::mol::EntityView&, const boost::filesystem::path&) const':
-/build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_pdb_handler.cc:52:50: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations]
- 52 | if (boost::iequals(boost::filesystem::extension(loc), ".pqr")) {
- | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
-In file included from /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_pdb_handler.cc:27:
+/build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/pdb_reader.cc:99:49: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations]
+ 99 | if(boost::iequals(boost::filesystem::extension(loc), ".pqr")) {
+ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
+/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here
+ 29 | inline std::string extension(const path& p)
+ | ^~~~~~~~~
+/build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_mae_handler.cc: In constructor 'ost::io::MAEReader::MAEReader(const boost::filesystem::path&)':
+/build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_mae_handler.cc:60:57: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations]
+ 60 | if (boost::iequals(".gz", boost::filesystem::extension(loc))) {
+ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
+In file included from /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_mae_handler.cc:31:
/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here
29 | inline std::string extension(const path& p)
| ^~~~~~~~~
@@ -20596,48 +20498,52 @@
/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here
29 | inline std::string extension(const path& p)
| ^~~~~~~~~
-/build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/pdb_reader.cc: In member function 'void ost::io::PDBReader::Init(const boost::filesystem::path&)':
-/build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/pdb_reader.cc:91:57: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations]
- 91 | if (boost::iequals(".gz", boost::filesystem::extension(loc))) {
+[ 40%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_mmcif_handler.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_mmcif_handler.cc.o -MF CMakeFiles/ost_io.dir/mol/entity_io_mmcif_handler.cc.o.d -o CMakeFiles/ost_io.dir/mol/entity_io_mmcif_handler.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_mmcif_handler.cc
+[ 40%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/sdf_reader.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/sdf_reader.cc.o -MF CMakeFiles/ost_io.dir/mol/sdf_reader.cc.o.d -o CMakeFiles/ost_io.dir/mol/sdf_reader.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/sdf_reader.cc
+[ 41%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/sdf_writer.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/sdf_writer.cc.o -MF CMakeFiles/ost_io.dir/mol/sdf_writer.cc.o.d -o CMakeFiles/ost_io.dir/mol/sdf_writer.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/sdf_writer.cc
+[ 41%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/save_entity.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/save_entity.cc.o -MF CMakeFiles/ost_io.dir/mol/save_entity.cc.o.d -o CMakeFiles/ost_io.dir/mol/save_entity.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/save_entity.cc
+/build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/sdf_reader.cc: In member function 'void ost::io::SDFReader::ClearState(const boost::filesystem::path&)':
+/build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/sdf_reader.cc:125:57: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations]
+ 125 | if (boost::iequals(".gz", boost::filesystem::extension(loc))) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
-In file included from /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/pdb_reader.cc:20:
-/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here
- 29 | inline std::string extension(const path& p)
- | ^~~~~~~~~
-/build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/pdb_reader.cc:99:49: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations]
- 99 | if(boost::iequals(boost::filesystem::extension(loc), ".pqr")) {
- | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
+In file included from /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/sdf_reader.cc:24:
/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here
29 | inline std::string extension(const path& p)
| ^~~~~~~~~
-[ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/dcd_io.cc.o
+[ 41%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/load_entity.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/load_entity.cc.o -MF CMakeFiles/ost_io.dir/mol/load_entity.cc.o.d -o CMakeFiles/ost_io.dir/mol/load_entity.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/load_entity.cc
+[ 41%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/surface_io_msms_handler.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/surface_io_msms_handler.cc.o -MF CMakeFiles/ost_io.dir/mol/surface_io_msms_handler.cc.o.d -o CMakeFiles/ost_io.dir/mol/surface_io_msms_handler.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/surface_io_msms_handler.cc
+[ 41%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/load_surface.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/load_surface.cc.o -MF CMakeFiles/ost_io.dir/mol/load_surface.cc.o.d -o CMakeFiles/ost_io.dir/mol/load_surface.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/load_surface.cc
+[ 41%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/chemdict_parser.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/chemdict_parser.cc.o -MF CMakeFiles/ost_io.dir/mol/chemdict_parser.cc.o.d -o CMakeFiles/ost_io.dir/mol/chemdict_parser.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/chemdict_parser.cc
+/build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/surface_io_msms_handler.cc: In function 'std::pair<boost::filesystem::path, boost::filesystem::path> ost::io::{anonymous}::detect_files(const boost::filesystem::path&)':
+/build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/surface_io_msms_handler.cc:36:45: warning: 'boost::filesystem::path boost::filesystem::change_extension(const path&, const path&)' is deprecated: Use path::replace_extension() instead [-Wdeprecated-declarations]
+ 36 | return std::make_pair(bf::change_extension(loc, ".vert"),
+ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
+In file included from /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/surface_io_msms_handler.cc:25:
+/usr/include/boost/filesystem/convenience.hpp:41:13: note: declared here
+ 41 | inline path change_extension(const path& p, const path& new_extension)
+ | ^~~~~~~~~~~~~~~~
+/build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/surface_io_msms_handler.cc:37:45: warning: 'boost::filesystem::path boost::filesystem::change_extension(const path&, const path&)' is deprecated: Use path::replace_extension() instead [-Wdeprecated-declarations]
+ 37 | bf::change_extension(loc, ".face"));
+ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
+/usr/include/boost/filesystem/convenience.hpp:41:13: note: declared here
+ 41 | inline path change_extension(const path& p, const path& new_extension)
+ | ^~~~~~~~~~~~~~~~
+[ 41%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/io_profile.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/io_profile.cc.o -MF CMakeFiles/ost_io.dir/mol/io_profile.cc.o.d -o CMakeFiles/ost_io.dir/mol/io_profile.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/io_profile.cc
+[ 41%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/dcd_io.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/dcd_io.cc.o -MF CMakeFiles/ost_io.dir/mol/dcd_io.cc.o.d -o CMakeFiles/ost_io.dir/mol/dcd_io.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/dcd_io.cc
-[ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/star_parser.cc.o
+[ 41%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/star_parser.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/star_parser.cc.o -MF CMakeFiles/ost_io.dir/mol/star_parser.cc.o.d -o CMakeFiles/ost_io.dir/mol/star_parser.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/star_parser.cc
-/build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_mae_handler.cc: In constructor 'ost::io::MAEReader::MAEReader(const boost::filesystem::path&)':
-/build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_mae_handler.cc:60:57: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations]
- 60 | if (boost::iequals(".gz", boost::filesystem::extension(loc))) {
- | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
-In file included from /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_mae_handler.cc:31:
-/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here
- 29 | inline std::string extension(const path& p)
- | ^~~~~~~~~
-[ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/star_writer.cc.o
+[ 41%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/star_writer.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/star_writer.cc.o -MF CMakeFiles/ost_io.dir/mol/star_writer.cc.o.d -o CMakeFiles/ost_io.dir/mol/star_writer.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/star_writer.cc
-/build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_pqr_handler.cc: In constructor 'ost::io::PQRReader::PQRReader(const boost::filesystem::path&)':
-/build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_pqr_handler.cc:61:57: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations]
- 61 | if (boost::iequals(".gz", boost::filesystem::extension(loc))) {
- | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
-In file included from /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_pqr_handler.cc:28:
-/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here
- 29 | inline std::string extension(const path& p)
- | ^~~~~~~~~
-[ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/mmcif_reader.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/mmcif_reader.cc.o -MF CMakeFiles/ost_io.dir/mol/mmcif_reader.cc.o.d -o CMakeFiles/ost_io.dir/mol/mmcif_reader.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/mmcif_reader.cc
-[ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/mmcif_info.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/mmcif_info.cc.o -MF CMakeFiles/ost_io.dir/mol/mmcif_info.cc.o.d -o CMakeFiles/ost_io.dir/mol/mmcif_info.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/mmcif_info.cc
-[ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/mmcif_writer.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/mmcif_writer.cc.o -MF CMakeFiles/ost_io.dir/mol/mmcif_writer.cc.o.d -o CMakeFiles/ost_io.dir/mol/mmcif_writer.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/mmcif_writer.cc
/build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/star_writer.cc: In member function 'void ost::io::StarWriter::Write(const String&, const String&)':
/build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/star_writer.cc:52:57: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations]
52 | if (boost::iequals(".gz", boost::filesystem::extension(filename))) {
@@ -20647,36 +20553,38 @@
/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here
29 | inline std::string extension(const path& p)
| ^~~~~~~~~
-[ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/pdb_str.cc.o
+[ 41%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/mmcif_reader.cc.o
+[ 43%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/mmcif_info.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/mmcif_reader.cc.o -MF CMakeFiles/ost_io.dir/mol/mmcif_reader.cc.o.d -o CMakeFiles/ost_io.dir/mol/mmcif_reader.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/mmcif_reader.cc
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/mmcif_info.cc.o -MF CMakeFiles/ost_io.dir/mol/mmcif_info.cc.o.d -o CMakeFiles/ost_io.dir/mol/mmcif_info.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/mmcif_info.cc
+[ 43%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/mmcif_writer.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/mmcif_writer.cc.o -MF CMakeFiles/ost_io.dir/mol/mmcif_writer.cc.o.d -o CMakeFiles/ost_io.dir/mol/mmcif_writer.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/mmcif_writer.cc
+[ 43%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/pdb_str.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/pdb_str.cc.o -MF CMakeFiles/ost_io.dir/mol/pdb_str.cc.o.d -o CMakeFiles/ost_io.dir/mol/pdb_str.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/pdb_str.cc
-[ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/sdf_str.cc.o
+[ 43%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/sdf_str.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/sdf_str.cc.o -MF CMakeFiles/ost_io.dir/mol/sdf_str.cc.o.d -o CMakeFiles/ost_io.dir/mol/sdf_str.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/sdf_str.cc
-[ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/mmcif_str.cc.o
+[ 43%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/mmcif_str.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/mmcif_str.cc.o -MF CMakeFiles/ost_io.dir/mol/mmcif_str.cc.o.d -o CMakeFiles/ost_io.dir/mol/mmcif_str.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/mmcif_str.cc
-[ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/stereochemical_params_reader.cc.o
+[ 43%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/stereochemical_params_reader.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/stereochemical_params_reader.cc.o -MF CMakeFiles/ost_io.dir/mol/stereochemical_params_reader.cc.o.d -o CMakeFiles/ost_io.dir/mol/stereochemical_params_reader.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/stereochemical_params_reader.cc
-[ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/omf.cc.o
+[ 43%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/omf.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/omf.cc.o -MF CMakeFiles/ost_io.dir/mol/omf.cc.o.d -o CMakeFiles/ost_io.dir/mol/omf.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/omf.cc
-[ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/clustal_io_handler.cc.o
+[ 43%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/clustal_io_handler.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/seq/clustal_io_handler.cc.o -MF CMakeFiles/ost_io.dir/seq/clustal_io_handler.cc.o.d -o CMakeFiles/ost_io.dir/seq/clustal_io_handler.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/clustal_io_handler.cc
-[ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/load.cc.o
+[ 43%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/load.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/seq/load.cc.o -MF CMakeFiles/ost_io.dir/seq/load.cc.o.d -o CMakeFiles/ost_io.dir/seq/load.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/load.cc
-[ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/save.cc.o
+[ 43%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/save.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/seq/save.cc.o -MF CMakeFiles/ost_io.dir/seq/save.cc.o.d -o CMakeFiles/ost_io.dir/seq/save.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/save.cc
-[ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/fasta_io_handler.cc.o
+[ 43%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/fasta_io_handler.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/seq/fasta_io_handler.cc.o -MF CMakeFiles/ost_io.dir/seq/fasta_io_handler.cc.o.d -o CMakeFiles/ost_io.dir/seq/fasta_io_handler.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/fasta_io_handler.cc
-[ 49%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/pir_io_handler.cc.o
+[ 44%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/pir_io_handler.cc.o
+[ 43%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/promod_io_handler.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/seq/pir_io_handler.cc.o -MF CMakeFiles/ost_io.dir/seq/pir_io_handler.cc.o.d -o CMakeFiles/ost_io.dir/seq/pir_io_handler.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/pir_io_handler.cc
-[ 49%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/promod_io_handler.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/seq/promod_io_handler.cc.o -MF CMakeFiles/ost_io.dir/seq/promod_io_handler.cc.o.d -o CMakeFiles/ost_io.dir/seq/promod_io_handler.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/promod_io_handler.cc
-[ 49%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/hhm_io_handler.cc.o
+[ 44%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/hhm_io_handler.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/seq/hhm_io_handler.cc.o -MF CMakeFiles/ost_io.dir/seq/hhm_io_handler.cc.o.d -o CMakeFiles/ost_io.dir/seq/hhm_io_handler.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/hhm_io_handler.cc
-[ 49%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/pssm_io_handler.cc.o
+[ 44%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/pssm_io_handler.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/seq/pssm_io_handler.cc.o -MF CMakeFiles/ost_io.dir/seq/pssm_io_handler.cc.o.d -o CMakeFiles/ost_io.dir/seq/pssm_io_handler.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/pssm_io_handler.cc
-[ 49%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/load_map.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/load_map.cc.o -MF CMakeFiles/ost_io.dir/img/load_map.cc.o.d -o CMakeFiles/ost_io.dir/img/load_map.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/load_map.cc
-[ 49%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_dx_handler.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_dx_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_dx_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_dx_handler.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_dx_handler.cc
/build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/hhm_io_handler.cc: In member function 'virtual void ost::io::HhmIOHandler::Import(ost::seq::ProfileHandle&, const boost::filesystem::path&)':
/build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/hhm_io_handler.cc:133:57: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations]
133 | if (boost::iequals(".gz", boost::filesystem::extension(loc))) {
@@ -20685,10 +20593,8 @@
/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here
29 | inline std::string extension(const path& p)
| ^~~~~~~~~
-[ 49%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_spi_handler.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_spi_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_spi_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_spi_handler.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_spi_handler.cc
-[ 49%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_situs_handler.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_situs_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_situs_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_situs_handler.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_situs_handler.cc
+[ 44%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/load_map.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/load_map.cc.o -MF CMakeFiles/ost_io.dir/img/load_map.cc.o.d -o CMakeFiles/ost_io.dir/img/load_map.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/load_map.cc
/build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/pssm_io_handler.cc: In member function 'virtual void ost::io::PssmIOHandler::Import(ost::seq::ProfileHandle&, const boost::filesystem::path&)':
/build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/pssm_io_handler.cc:47:57: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations]
47 | if (boost::iequals(".gz", boost::filesystem::extension(loc))) {
@@ -20697,16 +20603,16 @@
/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here
29 | inline std::string extension(const path& p)
| ^~~~~~~~~
-[ 49%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_mrc_handler.cc.o
-[ 49%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_dm3_handler.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_dm3_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_dm3_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_dm3_handler.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_dm3_handler.cc
+[ 44%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_dx_handler.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_dx_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_dx_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_dx_handler.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_dx_handler.cc
+[ 44%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_spi_handler.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_spi_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_spi_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_spi_handler.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_spi_handler.cc
+[ 44%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_situs_handler.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_situs_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_situs_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_situs_handler.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_situs_handler.cc
+[ 44%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_mrc_handler.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_mrc_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_mrc_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_mrc_handler.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_mrc_handler.cc
-[ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_tiff_handler.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_tiff_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_tiff_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_tiff_handler.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_tiff_handler.cc
-[ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_dat_handler.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_dat_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_dat_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_dat_handler.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_dat_handler.cc
-[ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_ipl_handler.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_ipl_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_ipl_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_ipl_handler.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_ipl_handler.cc
+[ 44%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_dm3_handler.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_dm3_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_dm3_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_dm3_handler.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_dm3_handler.cc
/build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_dx_handler.cc: In member function 'virtual void ost::io::MapIODxHandler::Import(ost::img::MapHandle&, const boost::filesystem::path&, const ost::io::ImageFormatBase&)':
/build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_dx_handler.cc:97:57: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations]
97 | if (boost::iequals(".gz", boost::filesystem::extension(loc))) {
@@ -20715,65 +20621,167 @@
/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here
29 | inline std::string extension(const path& p)
| ^~~~~~~~~
-[ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_jpk_handler.cc.o
+[ 44%] Linking CXX shared module ../../../stage/lib/python3.13/dist-packages/ost/info/_ost_info.so
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_info.dir/link.txt --verbose=1
+[ 45%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_tiff_handler.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_tiff_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_tiff_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_tiff_handler.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_tiff_handler.cc
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_ost_info.dir/link.d -Wl,-z,relro -shared -o ../../../stage/lib/python3.13/dist-packages/ost/info/_ost_info.so CMakeFiles/_ost_info.dir/wrap_info.cc.o -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib: ../../../stage/lib/libost_info.so.2.9.2 /usr/lib/i386-linux-gnu/libpython3.13.so /usr/lib/i386-linux-gnu/libboost_python313.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15 ../../../stage/lib/libost_base.so.2.9.2 ../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/info/pymod/__init__.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/info/./__init__.pyc\",\"__init__.py\",doraise=True)"
+[ 45%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_dat_handler.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_dat_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_dat_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_dat_handler.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_dat_handler.cc
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 45%] Built target _ost_info
+[ 45%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_ipl_handler.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_ipl_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_ipl_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_ipl_handler.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_ipl_handler.cc
+[ 45%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_jpk_handler.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_jpk_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_jpk_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_jpk_handler.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_jpk_handler.cc
-[ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_nanoscope_handler.cc.o
+[ 45%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_nanoscope_handler.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_nanoscope_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_nanoscope_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_nanoscope_handler.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_nanoscope_handler.cc
-[ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_png_handler.cc.o
+[ 45%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_png_handler.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_png_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_png_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_png_handler.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_png_handler.cc
-[ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_df3_handler.cc.o
+[ 45%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_df3_handler.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_df3_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_df3_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_df3_handler.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_df3_handler.cc
-[ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/image_format.cc.o
+[ 45%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/image_format.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/image_format.cc.o -MF CMakeFiles/ost_io.dir/img/image_format.cc.o.d -o CMakeFiles/ost_io.dir/img/image_format.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/image_format.cc
-[ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/tiff_util.cc.o
+[ 45%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/tiff_util.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/tiff_util.cc.o -MF CMakeFiles/ost_io.dir/img/tiff_util.cc.o.d -o CMakeFiles/ost_io.dir/img/tiff_util.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/tiff_util.cc
-[ 50%] Linking CXX shared module ../../../../stage/lib/python3.13/dist-packages/ost/mol/_ost_mol.so
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_mol.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_ost_mol.dir/link.d -Wl,-z,relro -shared -o ../../../../stage/lib/python3.13/dist-packages/ost/mol/_ost_mol.so CMakeFiles/_ost_mol.dir/export_atom.cc.o CMakeFiles/_ost_mol.dir/export_atom_view.cc.o CMakeFiles/_ost_mol.dir/export_bond.cc.o CMakeFiles/_ost_mol.dir/export_chain.cc.o CMakeFiles/_ost_mol.dir/export_chain_view.cc.o CMakeFiles/_ost_mol.dir/export_coord_group.cc.o CMakeFiles/_ost_mol.dir/export_coord_frame.cc.o CMakeFiles/_ost_mol.dir/export_editors.cc.o CMakeFiles/_ost_mol.dir/export_entity.cc.o CMakeFiles/_ost_mol.dir/export_entity_view.cc.o CMakeFiles/_ost_mol.dir/export_property_id.cc.o CMakeFiles/_ost_mol.dir/export_query.cc.o CMakeFiles/_ost_mol.dir/export_residue.cc.o CMakeFiles/_ost_mol.dir/export_residue_view.cc.o CMakeFiles/_ost_mol.dir/export_surface.cc.o CMakeFiles/_ost_mol.dir/export_bounding_box.cc.o CMakeFiles/_ost_mol.dir/export_query_view_wrapper.cc.o CMakeFiles/_ost_mol.dir/export_torsion.cc.o CMakeFiles/_ost_mol.dir/export_visitor.cc.o CMakeFiles/_ost_mol.dir/wrap_mol.cc.o CMakeFiles/_ost_mol.dir/export_entity_property_mapper.cc.o -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib: ../../../../stage/lib/libost_mol.so.2.9.2 /usr/lib/i386-linux-gnu/libpython3.13.so /usr/lib/i386-linux-gnu/libboost_python313.so.1.83.0 ../../../../stage/lib/libost_info.so.2.9.2 ../../../../stage/lib/libost_base.so.2.9.2 ../../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod/__init__.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/./__init__.pyc\",\"__init__.py\",doraise=True)"
+make -f modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build.make modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/depend
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 50%] Built target _ost_mol
-make -f modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build.make modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/depend
+make -f modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build.make modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/seq/base/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/DependInfo.cmake "--color="
+[ 45%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_atom.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_atom.cc.o -MF CMakeFiles/_ost_mol.dir/export_atom.cc.o.d -o CMakeFiles/_ost_mol.dir/export_atom.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod/export_atom.cc
+[ 45%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_atom_view.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_atom_view.cc.o -MF CMakeFiles/_ost_mol.dir/export_atom_view.cc.o.d -o CMakeFiles/_ost_mol.dir/export_atom_view.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod/export_atom_view.cc
+make -f modules/img/base/pymod/CMakeFiles/_ost_img.dir/build.make modules/img/base/pymod/CMakeFiles/_ost_img.dir/depend
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/img/base/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/pymod/CMakeFiles/_ost_img.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build.make modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build
+make -f modules/img/base/pymod/CMakeFiles/_ost_img.dir/build.make modules/img/base/pymod/CMakeFiles/_ost_img.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 51%] Building CXX object modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/wrap_seq.cc.o
-[ 51%] Building CXX object modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/export_sequence.cc.o
-[ 51%] Building CXX object modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/export_profile_handle.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/export_sequence.cc.o -MF CMakeFiles/_ost_seq.dir/export_sequence.cc.o.d -o CMakeFiles/_ost_seq.dir/export_sequence.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/base/pymod/export_sequence.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/export_profile_handle.cc.o -MF CMakeFiles/_ost_seq.dir/export_profile_handle.cc.o.d -o CMakeFiles/_ost_seq.dir/export_profile_handle.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/base/pymod/export_profile_handle.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/wrap_seq.cc.o -MF CMakeFiles/_ost_seq.dir/wrap_seq.cc.o.d -o CMakeFiles/_ost_seq.dir/wrap_seq.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/base/pymod/wrap_seq.cc
+[ 45%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_data.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_data.cc.o -MF CMakeFiles/_ost_img.dir/export_data.cc.o.d -o CMakeFiles/_ost_img.dir/export_data.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/pymod/export_data.cc
+[ 45%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_data_algorithm.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_data_algorithm.cc.o -MF CMakeFiles/_ost_img.dir/export_data_algorithm.cc.o.d -o CMakeFiles/_ost_img.dir/export_data_algorithm.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/pymod/export_data_algorithm.cc
+[ 45%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_extent.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_extent.cc.o -MF CMakeFiles/_ost_img.dir/export_extent.cc.o.d -o CMakeFiles/_ost_img.dir/export_extent.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/pymod/export_extent.cc
+[ 45%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_bond.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_bond.cc.o -MF CMakeFiles/_ost_mol.dir/export_bond.cc.o.d -o CMakeFiles/_ost_mol.dir/export_bond.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod/export_bond.cc
/build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/omf.cc: In constructor 'ost::io::DefaultPepLib::DefaultPepLib()':
/build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/omf.cc:2708:1: note: variable tracking size limit exceeded with '-fvar-tracking-assignments', retrying without
2708 | DefaultPepLib::DefaultPepLib() {
| ^~~~~~~~~~~~~
-[ 51%] Linking CXX shared library ../../../stage/lib/libost_io.so
+[ 45%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_chain.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_chain.cc.o -MF CMakeFiles/_ost_mol.dir/export_chain.cc.o.d -o CMakeFiles/_ost_mol.dir/export_chain.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod/export_chain.cc
+[ 45%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_chain_view.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_chain_view.cc.o -MF CMakeFiles/_ost_mol.dir/export_chain_view.cc.o.d -o CMakeFiles/_ost_mol.dir/export_chain_view.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod/export_chain_view.cc
+[ 45%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_image_handle.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_image_handle.cc.o -MF CMakeFiles/_ost_img.dir/export_image_handle.cc.o.d -o CMakeFiles/_ost_img.dir/export_image_handle.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/pymod/export_image_handle.cc
+[ 45%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_coord_group.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_coord_group.cc.o -MF CMakeFiles/_ost_mol.dir/export_coord_group.cc.o.d -o CMakeFiles/_ost_mol.dir/export_coord_group.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod/export_coord_group.cc
+[ 46%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_peak.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_peak.cc.o -MF CMakeFiles/_ost_img.dir/export_peak.cc.o.d -o CMakeFiles/_ost_img.dir/export_peak.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/pymod/export_peak.cc
+[ 46%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_phase.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_phase.cc.o -MF CMakeFiles/_ost_img.dir/export_phase.cc.o.d -o CMakeFiles/_ost_img.dir/export_phase.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/pymod/export_phase.cc
+[ 48%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_coord_frame.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_coord_frame.cc.o -MF CMakeFiles/_ost_mol.dir/export_coord_frame.cc.o.d -o CMakeFiles/_ost_mol.dir/export_coord_frame.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod/export_coord_frame.cc
+[ 48%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_point.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_point.cc.o -MF CMakeFiles/_ost_img.dir/export_point.cc.o.d -o CMakeFiles/_ost_img.dir/export_point.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/pymod/export_point.cc
+[ 48%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_progress.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_progress.cc.o -MF CMakeFiles/_ost_img.dir/export_progress.cc.o.d -o CMakeFiles/_ost_img.dir/export_progress.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/pymod/export_progress.cc
+[ 48%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_editors.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_editors.cc.o -MF CMakeFiles/_ost_mol.dir/export_editors.cc.o.d -o CMakeFiles/_ost_mol.dir/export_editors.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod/export_editors.cc
+[ 48%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_entity.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_entity.cc.o -MF CMakeFiles/_ost_mol.dir/export_entity.cc.o.d -o CMakeFiles/_ost_mol.dir/export_entity.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod/export_entity.cc
+[ 48%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_raster_image.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_raster_image.cc.o -MF CMakeFiles/_ost_img.dir/export_raster_image.cc.o.d -o CMakeFiles/_ost_img.dir/export_raster_image.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/pymod/export_raster_image.cc
+[ 48%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_mask.cc.o
+[ 48%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_size.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_size.cc.o -MF CMakeFiles/_ost_img.dir/export_size.cc.o.d -o CMakeFiles/_ost_img.dir/export_size.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/pymod/export_size.cc
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_mask.cc.o -MF CMakeFiles/_ost_img.dir/export_mask.cc.o.d -o CMakeFiles/_ost_img.dir/export_mask.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/pymod/export_mask.cc
+[ 48%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_entity_view.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_entity_view.cc.o -MF CMakeFiles/_ost_mol.dir/export_entity_view.cc.o.d -o CMakeFiles/_ost_mol.dir/export_entity_view.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod/export_entity_view.cc
+[ 48%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_image_list.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_image_list.cc.o -MF CMakeFiles/_ost_img.dir/export_image_list.cc.o.d -o CMakeFiles/_ost_img.dir/export_image_list.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/pymod/export_image_list.cc
+[ 48%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_map.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_map.cc.o -MF CMakeFiles/_ost_img.dir/export_map.cc.o.d -o CMakeFiles/_ost_img.dir/export_map.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/pymod/export_map.cc
+[ 48%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_property_id.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_property_id.cc.o -MF CMakeFiles/_ost_mol.dir/export_property_id.cc.o.d -o CMakeFiles/_ost_mol.dir/export_property_id.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod/export_property_id.cc
+[ 48%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/wrap_img.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/wrap_img.cc.o -MF CMakeFiles/_ost_img.dir/wrap_img.cc.o.d -o CMakeFiles/_ost_img.dir/wrap_img.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/pymod/wrap_img.cc
+[ 48%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_residue.cc.o
+[ 48%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_query.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_query.cc.o -MF CMakeFiles/_ost_mol.dir/export_query.cc.o.d -o CMakeFiles/_ost_mol.dir/export_query.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod/export_query.cc
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_residue.cc.o -MF CMakeFiles/_ost_mol.dir/export_residue.cc.o.d -o CMakeFiles/_ost_mol.dir/export_residue.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod/export_residue.cc
+[ 48%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_residue_view.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_residue_view.cc.o -MF CMakeFiles/_ost_mol.dir/export_residue_view.cc.o.d -o CMakeFiles/_ost_mol.dir/export_residue_view.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod/export_residue_view.cc
+[ 48%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_surface.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_surface.cc.o -MF CMakeFiles/_ost_mol.dir/export_surface.cc.o.d -o CMakeFiles/_ost_mol.dir/export_surface.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod/export_surface.cc
+[ 48%] Linking CXX shared module ../../../../stage/lib/python3.13/dist-packages/ost/img/_ost_img.so
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_img.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_ost_img.dir/link.d -Wl,-z,relro -shared -o ../../../../stage/lib/python3.13/dist-packages/ost/img/_ost_img.so CMakeFiles/_ost_img.dir/export_data.cc.o CMakeFiles/_ost_img.dir/export_data_algorithm.cc.o CMakeFiles/_ost_img.dir/export_extent.cc.o CMakeFiles/_ost_img.dir/export_image_handle.cc.o CMakeFiles/_ost_img.dir/export_peak.cc.o CMakeFiles/_ost_img.dir/export_phase.cc.o CMakeFiles/_ost_img.dir/export_point.cc.o CMakeFiles/_ost_img.dir/export_progress.cc.o CMakeFiles/_ost_img.dir/export_raster_image.cc.o CMakeFiles/_ost_img.dir/export_size.cc.o CMakeFiles/_ost_img.dir/export_mask.cc.o CMakeFiles/_ost_img.dir/export_image_list.cc.o CMakeFiles/_ost_img.dir/export_map.cc.o CMakeFiles/_ost_img.dir/wrap_img.cc.o -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib: ../../../../stage/lib/libost_img.so.2.9.2 /usr/lib/i386-linux-gnu/libpython3.13.so /usr/lib/i386-linux-gnu/libboost_python313.so.1.83.0 ../../../../stage/lib/libost_info.so.2.9.2 ../../../../stage/lib/libost_base.so.2.9.2 ../../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/img/base/pymod/__init__.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/img/./__init__.pyc\",\"__init__.py\",doraise=True)"
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 48%] Built target _ost_img
+[ 48%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_bounding_box.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_bounding_box.cc.o -MF CMakeFiles/_ost_mol.dir/export_bounding_box.cc.o.d -o CMakeFiles/_ost_mol.dir/export_bounding_box.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod/export_bounding_box.cc
+[ 48%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_query_view_wrapper.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_query_view_wrapper.cc.o -MF CMakeFiles/_ost_mol.dir/export_query_view_wrapper.cc.o.d -o CMakeFiles/_ost_mol.dir/export_query_view_wrapper.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod/export_query_view_wrapper.cc
+make -f modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build.make modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/depend
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/img/alg/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/DependInfo.cmake "--color="
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build.make modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 49%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/wrap_alg.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/wrap_alg.cc.o -MF CMakeFiles/_ost_img_alg.dir/wrap_alg.cc.o.d -o CMakeFiles/_ost_img_alg.dir/wrap_alg.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/pymod/wrap_alg.cc
+[ 49%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_filter.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_filter.cc.o -MF CMakeFiles/_ost_img_alg.dir/export_filter.cc.o.d -o CMakeFiles/_ost_img_alg.dir/export_filter.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/pymod/export_filter.cc
+[ 49%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_normalizer.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_normalizer.cc.o -MF CMakeFiles/_ost_img_alg.dir/export_normalizer.cc.o.d -o CMakeFiles/_ost_img_alg.dir/export_normalizer.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/pymod/export_normalizer.cc
+[ 50%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_torsion.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_torsion.cc.o -MF CMakeFiles/_ost_mol.dir/export_torsion.cc.o.d -o CMakeFiles/_ost_mol.dir/export_torsion.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod/export_torsion.cc
+[ 50%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_visitor.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_visitor.cc.o -MF CMakeFiles/_ost_mol.dir/export_visitor.cc.o.d -o CMakeFiles/_ost_mol.dir/export_visitor.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod/export_visitor.cc
+[ 50%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/wrap_mol.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/wrap_mol.cc.o -MF CMakeFiles/_ost_mol.dir/wrap_mol.cc.o.d -o CMakeFiles/_ost_mol.dir/wrap_mol.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod/wrap_mol.cc
+[ 50%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_entity_property_mapper.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_entity_property_mapper.cc.o -MF CMakeFiles/_ost_mol.dir/export_entity_property_mapper.cc.o.d -o CMakeFiles/_ost_mol.dir/export_entity_property_mapper.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod/export_entity_property_mapper.cc
+[ 50%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_transcendentals.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_transcendentals.cc.o -MF CMakeFiles/_ost_img_alg.dir/export_transcendentals.cc.o.d -o CMakeFiles/_ost_img_alg.dir/export_transcendentals.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/pymod/export_transcendentals.cc
+[ 50%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_polar.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_polar.cc.o -MF CMakeFiles/_ost_img_alg.dir/export_polar.cc.o.d -o CMakeFiles/_ost_img_alg.dir/export_polar.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/pymod/export_polar.cc
+[ 50%] Linking CXX shared module ../../../../stage/lib/python3.13/dist-packages/ost/img/alg/_ost_img_alg.so
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_img_alg.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_ost_img_alg.dir/link.d -Wl,-z,relro -shared -o ../../../../stage/lib/python3.13/dist-packages/ost/img/alg/_ost_img_alg.so CMakeFiles/_ost_img_alg.dir/wrap_alg.cc.o CMakeFiles/_ost_img_alg.dir/export_filter.cc.o CMakeFiles/_ost_img_alg.dir/export_normalizer.cc.o CMakeFiles/_ost_img_alg.dir/export_transcendentals.cc.o CMakeFiles/_ost_img_alg.dir/export_polar.cc.o -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib: ../../../../stage/lib/libost_img_alg.so.2.9.2 /usr/lib/i386-linux-gnu/libpython3.13.so /usr/lib/i386-linux-gnu/libboost_python313.so.1.83.0 /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_img.so.2.9.2 ../../../../stage/lib/libost_info.so.2.9.2 ../../../../stage/lib/libost_base.so.2.9.2 ../../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/img/alg/pymod/__init__.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/img/alg/./__init__.pyc\",\"__init__.py\",doraise=True)"
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 50%] Built target _ost_img_alg
+[ 50%] Linking CXX shared library ../../../stage/lib/libost_io.so
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_io.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/ost_io.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_io.so.2.9 -o ../../../stage/lib/libost_io.so.2.9.2 CMakeFiles/ost_io.dir/io_manager.cc.o CMakeFiles/ost_io.dir/convert.cc.o CMakeFiles/ost_io.dir/io_utils.cc.o CMakeFiles/ost_io.dir/mol/entity_io_crd_handler.cc.o CMakeFiles/ost_io.dir/mol/entity_io_pqr_handler.cc.o CMakeFiles/ost_io.dir/mol/entity_io_mae_handler.cc.o CMakeFiles/ost_io.dir/mol/pdb_reader.cc.o CMakeFiles/ost_io.dir/mol/entity_io_pdb_handler.cc.o CMakeFiles/ost_io.dir/mol/pdb_writer.cc.o CMakeFiles/ost_io.dir/mol/entity_io_sdf_handler.cc.o CMakeFiles/ost_io.dir/mol/entity_io_mmcif_handler.cc.o CMakeFiles/ost_io.dir/mol/sdf_reader.cc.o CMakeFiles/ost_io.dir/mol/sdf_writer.cc.o CMakeFiles/ost_io.dir/mol/save_entity.cc.o CMakeFiles/ost_io.dir/mol/load_entity.cc.o CMakeFiles/ost_io.dir/mol/surface_io_msms_handler.cc.o CMakeFiles/ost_io.dir/mol/load_surface.cc.o CMakeFiles/ost_io.dir/mol/chemdict_parser.cc.o CMakeFiles/ost_io.dir/mol/io_profile.cc.o CMakeFiles/ost_io.dir/mol/dcd_io.cc.o CMakeFiles/ost_io.dir/mol/star_parser.cc.o CMakeFiles/ost_io.dir/mol/star_writer.cc.o CMakeFiles/ost_io.dir/mol/mmcif_reader.cc.o CMakeFiles/ost_io.dir/mol/mmcif_info.cc.o CMakeFiles/ost_io.dir/mol/mmcif_writer.cc.o CMakeFiles/ost_io.dir/mol/pdb_str.cc.o CMakeFiles/ost_io.dir/mol/sdf_str.cc.o CMakeFiles/ost_io.dir/mol/mmcif_str.cc.o CMakeFiles/ost_io.dir/mol/stereochemical_params_reader.cc.o CMakeFiles/ost_io.dir/mol/omf.cc.o CMakeFiles/ost_io.dir/seq/clustal_io_handler.cc.o CMakeFiles/ost_io.dir/seq/load.cc.o CMakeFiles/ost_io.dir/seq/save.cc.o CMakeFiles/ost_io.dir/seq/fasta_io_handler.cc.o CMakeFiles/ost_io.dir/seq/pir_io_handler.cc.o CMakeFiles/ost_io.dir/seq/promod_io_handler.cc.o CMakeFiles/ost_io.dir/seq/hhm_io_handler.cc.o CMakeFiles/ost_io.dir/seq/pssm_io_handler.cc.o CMakeFiles/ost_io.dir/img/load_map.cc.o CMakeFiles/ost_io.dir/img/map_io_dx_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_spi_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_situs_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_mrc_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_dm3_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_tiff_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_dat_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_ipl_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_jpk_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_nanoscope_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_png_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_df3_handler.cc.o CMakeFiles/ost_io.dir/img/image_format.cc.o CMakeFiles/ost_io.dir/img/tiff_util.cc.o -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib: ../../../stage/lib/libost_mol_alg.so.2.9.2 ../../../stage/lib/libost_img_alg.so.2.9.2 /usr/lib/i386-linux-gnu/libtiff.so /usr/lib/i386-linux-gnu/libpng.so /usr/lib/i386-linux-gnu/libz.so ../../../stage/lib/libost_conop.so.2.9.2 ../../../stage/lib/libost_db.so.2.9.2 /usr/lib/i386-linux-gnu/libsqlite3.so ../../../stage/lib/libost_img.so.2.9.2 /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libfftw3f_threads.so /usr/lib/i386-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_thread.so.1.83.0 ../../../stage/lib/libost_seq_alg.so.2.9.2 ../../../stage/lib/libost_seq.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_iostreams.so.1.83.0 ../../../stage/lib/libost_mol.so.2.9.2 ../../../stage/lib/libost_info.so.2.9.2 ../../../stage/lib/libost_base.so.2.9.2 ../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_io.so.2.9.2 ../../../stage/lib/libost_io.so.2.9 ../../../stage/lib/libost_io.so
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 51%] Built target ost_io
+[ 50%] Built target ost_io
make -f modules/conop/src/CMakeFiles/chemdict_tool.dir/build.make modules/conop/src/CMakeFiles/chemdict_tool.dir/depend
-make -f modules/gui/src/CMakeFiles/ost_gui.dir/build.make modules/gui/src/CMakeFiles/ost_gui.dir/depend
make -f modules/io/tests/CMakeFiles/test_mae_standalone.dir/build.make modules/io/tests/CMakeFiles/test_mae_standalone.dir/depend
make -f modules/mol/alg/src/CMakeFiles/lddt.dir/build.make modules/mol/alg/src/CMakeFiles/lddt.dir/depend
make -f tools/molck/CMakeFiles/molck.dir/build.make tools/molck/CMakeFiles/molck.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/io/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests/CMakeFiles/test_mae_standalone.dir/DependInfo.cmake "--color="
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/conop/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src/CMakeFiles/chemdict_tool.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src/CMakeFiles/lddt.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/io/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests/CMakeFiles/test_mae_standalone.dir/DependInfo.cmake "--color="
-make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/tools/molck /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/tools/molck /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/tools/molck/CMakeFiles/molck.dir/DependInfo.cmake "--color="
-make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/conop/src/CMakeFiles/chemdict_tool.dir/build.make modules/conop/src/CMakeFiles/chemdict_tool.dir/build
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make -f modules/mol/alg/src/CMakeFiles/lddt.dir/build.make modules/mol/alg/src/CMakeFiles/lddt.dir/build
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/conop/src/CMakeFiles/chemdict_tool.dir/build.make modules/conop/src/CMakeFiles/chemdict_tool.dir/build
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make -f modules/io/tests/CMakeFiles/test_mae_standalone.dir/build.make modules/io/tests/CMakeFiles/test_mae_standalone.dir/build
make -f tools/molck/CMakeFiles/molck.dir/build.make tools/molck/CMakeFiles/molck.dir/build
@@ -20781,134 +20789,219 @@
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 51%] Generating data_viewer/moc_fft_panel.cpp
+[ 50%] Building CXX object modules/mol/alg/src/CMakeFiles/lddt.dir/lddt.cc.o
+[ 50%] Building CXX object tools/molck/CMakeFiles/molck.dir/main.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/lddt.dir/lddt.cc.o -MF CMakeFiles/lddt.dir/lddt.cc.o.d -o CMakeFiles/lddt.dir/lddt.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/lddt.cc
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/tools/molck && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT tools/molck/CMakeFiles/molck.dir/main.cc.o -MF CMakeFiles/molck.dir/main.cc.o.d -o CMakeFiles/molck.dir/main.cc.o -c /build/reproducible-path/openstructure-2.9.2/tools/molck/main.cc
+[ 50%] Building CXX object modules/io/tests/CMakeFiles/test_mae_standalone.dir/test_mae_standalone.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/test_mae_standalone.dir/test_mae_standalone.cc.o -MF CMakeFiles/test_mae_standalone.dir/test_mae_standalone.cc.o.d -o CMakeFiles/test_mae_standalone.dir/test_mae_standalone.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/tests/test_mae_standalone.cc
+[ 50%] Building CXX object modules/conop/src/CMakeFiles/chemdict_tool.dir/chemdict_tool.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/conop/src/CMakeFiles/chemdict_tool.dir/chemdict_tool.cc.o -MF CMakeFiles/chemdict_tool.dir/chemdict_tool.cc.o.d -o CMakeFiles/chemdict_tool.dir/chemdict_tool.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/conop/src/chemdict_tool.cc
+/build/reproducible-path/openstructure-2.9.2/modules/conop/src/chemdict_tool.cc: In function 'int main(int, const char**)':
+/build/reproducible-path/openstructure-2.9.2/modules/conop/src/chemdict_tool.cc:96:57: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations]
+ 96 | if (boost::iequals(".gz", boost::filesystem::extension(argv[2]))) {
+ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
+In file included from /build/reproducible-path/openstructure-2.9.2/modules/conop/src/chemdict_tool.cc:27:
+/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here
+ 29 | inline std::string extension(const path& p)
+ | ^~~~~~~~~
+/build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/lddt.cc: In function 'ost::conop::CompoundLibPtr load_compound_lib(const String&)':
+/build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/lddt.cc:138:48: warning: 'boost::filesystem::path boost::filesystem::path::branch_path() const' is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations]
+ 138 | fs::path path_only=path_and_exe.branch_path();
+ | ~~~~~~~~~~~~~~~~~~~~~~~~^~
+In file included from /usr/include/boost/filesystem/fstream.hpp:17,
+ from /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/lddt.cc:26:
+/usr/include/boost/filesystem/path.hpp:1129:10: note: declared here
+ 1129 | path branch_path() const { return parent_path(); }
+ | ^~~~~~~~~~~
+/build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/lddt.cc:139:48: warning: 'boost::filesystem::path boost::filesystem::path::branch_path() const' is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations]
+ 139 | fs::path share_path = path_only.branch_path();
+ | ~~~~~~~~~~~~~~~~~~~~~^~
+/usr/include/boost/filesystem/path.hpp:1129:10: note: declared here
+ 1129 | path branch_path() const { return parent_path(); }
+ | ^~~~~~~~~~~
+/build/reproducible-path/openstructure-2.9.2/tools/molck/main.cc: In function 'ost::conop::CompoundLibPtr load_compound_lib(const String&)':
+/build/reproducible-path/openstructure-2.9.2/tools/molck/main.cc:119:48: warning: 'boost::filesystem::path boost::filesystem::path::branch_path() const' is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations]
+ 119 | fs::path path_only=path_and_exe.branch_path();
+ | ~~~~~~~~~~~~~~~~~~~~~~~~^~
+In file included from /build/reproducible-path/openstructure-2.9.2/tools/molck/main.cc:3:
+/usr/include/boost/filesystem/path.hpp:1129:10: note: declared here
+ 1129 | path branch_path() const { return parent_path(); }
+ | ^~~~~~~~~~~
+/build/reproducible-path/openstructure-2.9.2/tools/molck/main.cc:120:48: warning: 'boost::filesystem::path boost::filesystem::path::branch_path() const' is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations]
+ 120 | fs::path share_path = path_only.branch_path();
+ | ~~~~~~~~~~~~~~~~~~~~~^~
+/usr/include/boost/filesystem/path.hpp:1129:10: note: declared here
+ 1129 | path branch_path() const { return parent_path(); }
+ | ^~~~~~~~~~~
+[ 50%] Linking CXX executable ../../../stage/bin/test_mae_standalone
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_mae_standalone.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/test_mae_standalone.dir/link.d CMakeFiles/test_mae_standalone.dir/test_mae_standalone.cc.o -o ../../../stage/bin/test_mae_standalone -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib ../../../stage/lib/libost_io.so.2.9.2 ../../../stage/lib/libost_mol_alg.so.2.9.2 ../../../stage/lib/libost_conop.so.2.9.2 ../../../stage/lib/libost_db.so.2.9.2 /usr/lib/i386-linux-gnu/libsqlite3.so /usr/lib/i386-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_thread.so.1.83.0 ../../../stage/lib/libost_seq_alg.so.2.9.2 ../../../stage/lib/libost_seq.so.2.9.2 ../../../stage/lib/libost_mol.so.2.9.2 ../../../stage/lib/libost_img_alg.so.2.9.2 ../../../stage/lib/libost_img.so.2.9.2 ../../../stage/lib/libost_info.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 ../../../stage/lib/libost_base.so.2.9.2 ../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libfftw3f_threads.so /usr/lib/i386-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/i386-linux-gnu/libtiff.so /usr/lib/i386-linux-gnu/libpng.so /usr/lib/i386-linux-gnu/libz.so
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 50%] Built target test_mae_standalone
+[ 50%] Linking CXX shared module ../../../../stage/lib/python3.13/dist-packages/ost/mol/_ost_mol.so
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_mol.dir/link.txt --verbose=1
+[ 50%] Linking CXX executable ../../../stage/bin/chemdict_tool
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemdict_tool.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/chemdict_tool.dir/link.d CMakeFiles/chemdict_tool.dir/chemdict_tool.cc.o -o ../../../stage/bin/chemdict_tool -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib: ../../../stage/lib/libost_io.so.2.9.2 ../../../stage/lib/libost_mol_alg.so.2.9.2 ../../../stage/lib/libost_conop.so.2.9.2 ../../../stage/lib/libost_db.so.2.9.2 /usr/lib/i386-linux-gnu/libsqlite3.so /usr/lib/i386-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_thread.so.1.83.0 ../../../stage/lib/libost_seq_alg.so.2.9.2 ../../../stage/lib/libost_seq.so.2.9.2 ../../../stage/lib/libost_mol.so.2.9.2 ../../../stage/lib/libost_img_alg.so.2.9.2 ../../../stage/lib/libost_img.so.2.9.2 ../../../stage/lib/libost_info.so.2.9.2 ../../../stage/lib/libost_base.so.2.9.2 ../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libfftw3f_threads.so /usr/lib/i386-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/i386-linux-gnu/libtiff.so /usr/lib/i386-linux-gnu/libpng.so /usr/lib/i386-linux-gnu/libz.so
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 50%] Built target chemdict_tool
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_ost_mol.dir/link.d -Wl,-z,relro -shared -o ../../../../stage/lib/python3.13/dist-packages/ost/mol/_ost_mol.so CMakeFiles/_ost_mol.dir/export_atom.cc.o CMakeFiles/_ost_mol.dir/export_atom_view.cc.o CMakeFiles/_ost_mol.dir/export_bond.cc.o CMakeFiles/_ost_mol.dir/export_chain.cc.o CMakeFiles/_ost_mol.dir/export_chain_view.cc.o CMakeFiles/_ost_mol.dir/export_coord_group.cc.o CMakeFiles/_ost_mol.dir/export_coord_frame.cc.o CMakeFiles/_ost_mol.dir/export_editors.cc.o CMakeFiles/_ost_mol.dir/export_entity.cc.o CMakeFiles/_ost_mol.dir/export_entity_view.cc.o CMakeFiles/_ost_mol.dir/export_property_id.cc.o CMakeFiles/_ost_mol.dir/export_query.cc.o CMakeFiles/_ost_mol.dir/export_residue.cc.o CMakeFiles/_ost_mol.dir/export_residue_view.cc.o CMakeFiles/_ost_mol.dir/export_surface.cc.o CMakeFiles/_ost_mol.dir/export_bounding_box.cc.o CMakeFiles/_ost_mol.dir/export_query_view_wrapper.cc.o CMakeFiles/_ost_mol.dir/export_torsion.cc.o CMakeFiles/_ost_mol.dir/export_visitor.cc.o CMakeFiles/_ost_mol.dir/wrap_mol.cc.o CMakeFiles/_ost_mol.dir/export_entity_property_mapper.cc.o -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib: ../../../../stage/lib/libost_mol.so.2.9.2 /usr/lib/i386-linux-gnu/libpython3.13.so /usr/lib/i386-linux-gnu/libboost_python313.so.1.83.0 ../../../../stage/lib/libost_info.so.2.9.2 ../../../../stage/lib/libost_base.so.2.9.2 ../../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod/__init__.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/./__init__.pyc\",\"__init__.py\",doraise=True)"
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 50%] Built target _ost_mol
+make -f modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build.make modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/depend
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/seq/base/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/DependInfo.cmake "--color="
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build.make modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 50%] Building CXX object modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/export_sequence.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/export_sequence.cc.o -MF CMakeFiles/_ost_seq.dir/export_sequence.cc.o.d -o CMakeFiles/_ost_seq.dir/export_sequence.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/base/pymod/export_sequence.cc
+[ 51%] Building CXX object modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/export_profile_handle.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/export_profile_handle.cc.o -MF CMakeFiles/_ost_seq.dir/export_profile_handle.cc.o.d -o CMakeFiles/_ost_seq.dir/export_profile_handle.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/base/pymod/export_profile_handle.cc
+[ 51%] Building CXX object modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/wrap_seq.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/wrap_seq.cc.o -MF CMakeFiles/_ost_seq.dir/wrap_seq.cc.o.d -o CMakeFiles/_ost_seq.dir/wrap_seq.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/base/pymod/wrap_seq.cc
+[ 51%] Linking CXX executable ../../../../stage/bin/lddt
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lddt.dir/link.txt --verbose=1
+[ 51%] Linking CXX executable ../../stage/bin/molck
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/tools/molck && /usr/bin/cmake -E cmake_link_script CMakeFiles/molck.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/lddt.dir/link.d CMakeFiles/lddt.dir/lddt.cc.o -o ../../../../stage/bin/lddt -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib: ../../../../stage/lib/libost_io.so.2.9.2 ../../../../stage/lib/libost_mol_alg.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_thread.so.1.83.0 ../../../../stage/lib/libost_seq_alg.so.2.9.2 ../../../../stage/lib/libost_img_alg.so.2.9.2 ../../../../stage/lib/libost_img.so.2.9.2 /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_conop.so.2.9.2 ../../../../stage/lib/libost_db.so.2.9.2 ../../../../stage/lib/libost_seq.so.2.9.2 ../../../../stage/lib/libost_mol.so.2.9.2 ../../../../stage/lib/libost_info.so.2.9.2 ../../../../stage/lib/libost_base.so.2.9.2 ../../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/i386-linux-gnu/libsqlite3.so /usr/lib/i386-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/i386-linux-gnu/libtiff.so /usr/lib/i386-linux-gnu/libpng.so /usr/lib/i386-linux-gnu/libz.so
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 51%] Built target lddt
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/molck.dir/link.d CMakeFiles/molck.dir/main.cc.o -o ../../stage/bin/molck -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib: ../../stage/lib/libost_io.so.2.9.2 ../../stage/lib/libost_mol_alg.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_thread.so.1.83.0 ../../stage/lib/libost_seq_alg.so.2.9.2 ../../stage/lib/libost_conop.so.2.9.2 ../../stage/lib/libost_db.so.2.9.2 /usr/lib/i386-linux-gnu/libsqlite3.so ../../stage/lib/libost_seq.so.2.9.2 ../../stage/lib/libost_mol.so.2.9.2 ../../stage/lib/libost_img_alg.so.2.9.2 ../../stage/lib/libost_img.so.2.9.2 ../../stage/lib/libost_info.so.2.9.2 ../../stage/lib/libost_base.so.2.9.2 ../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libfftw3f_threads.so /usr/lib/i386-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/i386-linux-gnu/libtiff.so /usr/lib/i386-linux-gnu/libpng.so /usr/lib/i386-linux-gnu/libz.so
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 51%] Built target molck
+[ 51%] Linking CXX shared library ../../../stage/lib/libost_gfx.so
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/test_texture.png /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/share/openstructure/textures/test_texture.png
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/glyph_texture.png /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/share/openstructure/textures/glyph_texture.png
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_gfx.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/ost_gfx.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_gfx.so.2.9 -o ../../../stage/lib/libost_gfx.so.2.9.2 CMakeFiles/ost_gfx.dir/bitmap_io.cc.o CMakeFiles/ost_gfx.dir/exporter.cc.o CMakeFiles/ost_gfx.dir/collada_exporter.cc.o CMakeFiles/ost_gfx.dir/color.cc.o CMakeFiles/ost_gfx.dir/primitives.cc.o CMakeFiles/ost_gfx.dir/entity.cc.o CMakeFiles/ost_gfx.dir/symmetry_node.cc.o CMakeFiles/ost_gfx.dir/gfx_node.cc.o CMakeFiles/ost_gfx.dir/gfx_object.cc.o CMakeFiles/ost_gfx.dir/gfx_prim.cc.o CMakeFiles/ost_gfx.dir/gfx_test_object.cc.o CMakeFiles/ost_gfx.dir/input.cc.o CMakeFiles/ost_gfx.dir/prim_list.cc.o CMakeFiles/ost_gfx.dir/scene.cc.o CMakeFiles/ost_gfx.dir/selection.cc.o CMakeFiles/ost_gfx.dir/surface.cc.o CMakeFiles/ost_gfx.dir/gradient.cc.o CMakeFiles/ost_gfx.dir/gradient_manager.cc.o CMakeFiles/ost_gfx.dir/vertex_array.cc.o CMakeFiles/ost_gfx.dir/vertex_array_helper.cc.o CMakeFiles/ost_gfx.dir/material.cc.o CMakeFiles/ost_gfx.dir/povray.cc.o CMakeFiles/ost_gfx.dir/gost_exporter.cc.o CMakeFiles/ost_gfx.dir/texture.cc.o CMakeFiles/ost_gfx.dir/color_ops/color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/by_element_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/by_chain_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/uniform_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/gradient_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/entity_view_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/basic_gradient_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/gradient_level_color_op.cc.o CMakeFiles/ost_gfx.dir/impl/entity_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/entity_detail.cc.o CMakeFiles/ost_gfx.dir/impl/cartoon_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/custom_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/cpk_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/debug_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/simple_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/sline_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/line_trace_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/backbone_trace.cc.o CMakeFiles/ost_gfx.dir/impl/connect_renderer_base.cc.o CMakeFiles/ost_gfx.dir/impl/trace_renderer_base.cc.o CMakeFiles/ost_gfx.dir/impl/mapped_property.cc.o CMakeFiles/ost_gfx.dir/impl/tabulated_trig.cc.o CMakeFiles/ost_gfx.dir/impl/trace_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/fast_spheres.cc.o CMakeFiles/ost_gfx.dir/render_options/render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/line_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/custom_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/cpk_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/simple_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/sline_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/line_trace_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/cartoon_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/trace_render_options.cc.o CMakeFiles/ost_gfx.dir/color_ops/map_handle_color_op.cc.o CMakeFiles/ost_gfx.dir/map_iso.cc.o CMakeFiles/ost_gfx.dir/map_slab.cc.o CMakeFiles/ost_gfx.dir/impl/map_iso_gen.cc.o CMakeFiles/ost_gfx.dir/impl/map_iso_gen_s.cc.o CMakeFiles/ost_gfx.dir/impl/map_iso_gen_o.cc.o CMakeFiles/ost_gfx.dir/impl/map_octree.cc.o CMakeFiles/ost_gfx.dir/impl/octree_isocont.cc.o -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib: ../../../stage/lib/libost_conop.so.2.9.2 ../../../stage/lib/libost_img_alg.so.2.9.2 /usr/lib/i386-linux-gnu/libOpenGL.so /usr/lib/i386-linux-gnu/libGLX.so /usr/lib/i386-linux-gnu/libGLU.so /usr/lib/i386-linux-gnu/libpng.so /usr/lib/i386-linux-gnu/libz.so ../../../stage/lib/libost_db.so.2.9.2 ../../../stage/lib/libost_seq.so.2.9.2 ../../../stage/lib/libost_mol.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/i386-linux-gnu/libsqlite3.so ../../../stage/lib/libost_img.so.2.9.2 ../../../stage/lib/libost_info.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15 ../../../stage/lib/libost_base.so.2.9.2 ../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libfftw3f_threads.so
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_gfx.so.2.9.2 ../../../stage/lib/libost_gfx.so.2.9 ../../../stage/lib/libost_gfx.so
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 51%] Built target ost_gfx
+make -f modules/gui/src/CMakeFiles/ost_gui.dir/build.make modules/gui/src/CMakeFiles/ost_gui.dir/depend
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
[ 51%] Generating tools/moc_tool_options_win.cpp
-[ 51%] Generating data_viewer/moc_argand.cpp
-[ 51%] Generating data_viewer/moc_data_viewer_panel_base.cpp
-[ 51%] Generating data_viewer/moc_data_viewer.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/tools/moc_tool_options_win.cpp_parameters
+[ 51%] Generating data_viewer/moc_argand.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/data_viewer/moc_argand.cpp_parameters
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/data_viewer/moc_fft_panel.cpp_parameters
+[ 51%] Generating data_viewer/moc_data_viewer.cpp
+[ 51%] Generating data_viewer/moc_data_viewer_panel_base.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/data_viewer/moc_data_viewer.cpp_parameters
-[ 51%] Generating data_viewer/moc_info_panel.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/data_viewer/moc_data_viewer_panel_base.cpp_parameters
-[ 51%] Generating data_viewer/moc_overlay_base.cpp
-[ 51%] Generating data_viewer/moc_null_overlay.cpp
+[ 51%] Generating data_viewer/moc_fft_panel.cpp
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/data_viewer/moc_fft_panel.cpp_parameters
+[ 51%] Generating data_viewer/moc_info_panel.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/data_viewer/moc_info_panel.cpp_parameters
-[ 51%] Generating data_viewer/moc_pointlist_overlay_base.cpp
-[ 51%] Generating data_viewer/moc_overlay_manager_gui.cpp
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/data_viewer/moc_overlay_base.cpp_parameters
+[ 51%] Generating data_viewer/moc_null_overlay.cpp
+[ 51%] Generating data_viewer/moc_overlay_base.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/data_viewer/moc_null_overlay.cpp_parameters
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/data_viewer/moc_pointlist_overlay_base.cpp_parameters
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/data_viewer/moc_overlay_base.cpp_parameters
+[ 51%] Generating data_viewer/moc_overlay_manager_gui.cpp
+[ 51%] Generating data_viewer/moc_pointlist_overlay_base.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/data_viewer/moc_overlay_manager_gui.cpp_parameters
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/data_viewer/moc_pointlist_overlay_base.cpp_parameters
[ 51%] Generating messages/moc_log_reader.cpp
-[ 51%] Generating moc_dock_widget.cpp
-[ 51%] Generating messages/moc_message_box_widget.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/messages && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/messages/moc_log_reader.cpp_parameters
+[ 51%] Generating messages/moc_message_box_widget.cpp
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/messages && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/messages/moc_message_box_widget.cpp_parameters
[ 51%] Generating messages/moc_message_widget.cpp
+[ 51%] Generating moc_dock_widget.cpp
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/messages && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/messages/moc_message_widget.cpp_parameters
+[ 51%] Generating moc_file_browser.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/moc_dock_widget.cpp_parameters
[ 51%] Generating moc_file_type_dialog.cpp
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/messages && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/messages/moc_message_box_widget.cpp_parameters
-[ 51%] Generating moc_file_browser.cpp
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/messages && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/messages/moc_message_widget.cpp_parameters
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/moc_file_browser.cpp_parameters
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/moc_file_type_dialog.cpp_parameters
-[ 53%] Building CXX object modules/conop/src/CMakeFiles/chemdict_tool.dir/chemdict_tool.cc.o
-[ 53%] Building CXX object modules/mol/alg/src/CMakeFiles/lddt.dir/lddt.cc.o
[ 53%] Generating moc_file_viewer.cpp
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/moc_file_browser.cpp_parameters
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/conop/src/CMakeFiles/chemdict_tool.dir/chemdict_tool.cc.o -MF CMakeFiles/chemdict_tool.dir/chemdict_tool.cc.o.d -o CMakeFiles/chemdict_tool.dir/chemdict_tool.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/conop/src/chemdict_tool.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/lddt.dir/lddt.cc.o -MF CMakeFiles/lddt.dir/lddt.cc.o.d -o CMakeFiles/lddt.dir/lddt.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/lddt.cc
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/moc_file_viewer.cpp_parameters
-[ 53%] Building CXX object modules/io/tests/CMakeFiles/test_mae_standalone.dir/test_mae_standalone.cc.o
-[ 53%] Building CXX object tools/molck/CMakeFiles/molck.dir/main.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/test_mae_standalone.dir/test_mae_standalone.cc.o -MF CMakeFiles/test_mae_standalone.dir/test_mae_standalone.cc.o.d -o CMakeFiles/test_mae_standalone.dir/test_mae_standalone.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/tests/test_mae_standalone.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/tools/molck && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT tools/molck/CMakeFiles/molck.dir/main.cc.o -MF CMakeFiles/molck.dir/main.cc.o.d -o CMakeFiles/molck.dir/main.cc.o -c /build/reproducible-path/openstructure-2.9.2/tools/molck/main.cc
[ 53%] Generating moc_gl_canvas.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/moc_gl_canvas.cpp_parameters
[ 53%] Generating moc_gl_win.cpp
[ 53%] Generating moc_gosty_app.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/moc_gl_win.cpp_parameters
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/moc_gosty_app.cpp_parameters
[ 53%] Generating moc_main.cpp
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/moc_gosty_app.cpp_parameters
+[ 53%] Generating moc_main_area.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/moc_main.cpp_parameters
-[ 53%] Generating moc_scene_selection.cpp
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/moc_main_area.cpp_parameters
[ 53%] Generating moc_perspective.cpp
[ 53%] Generating moc_main_window.cpp
-[ 53%] Generating moc_main_area.cpp
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/moc_scene_selection.cpp_parameters
-[ 53%] Generating moc_scene_menu.cpp
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/moc_perspective.cpp_parameters
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/moc_main_area.cpp_parameters
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/moc_main_window.cpp_parameters
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/moc_perspective.cpp_parameters
+[ 53%] Generating moc_scene_menu.cpp
+[ 53%] Generating moc_scene_selection.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/moc_scene_menu.cpp_parameters
[ 54%] Generating moc_widget.cpp
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/moc_widget.cpp_parameters
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/moc_scene_selection.cpp_parameters
[ 54%] Generating moc_widget_geom_handler.cpp
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/moc_widget.cpp_parameters
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/moc_widget_geom_handler.cpp_parameters
[ 54%] Generating moc_widget_pool.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/moc_widget_pool.cpp_parameters
[ 54%] Generating panels/moc_bottom_bar.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/panels/moc_bottom_bar.cpp_parameters
[ 55%] Generating panels/moc_button_bar.cpp
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/panels/moc_button_bar.cpp_parameters
-[ 55%] Generating panels/moc_panel_widget_container.cpp
[ 55%] Generating panels/moc_button_box.cpp
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/panels/moc_panel_widget_container.cpp_parameters
-[ 55%] Generating panels/moc_drop_box.cpp
-[ 55%] Generating panels/moc_panel_bar.cpp
-[ 55%] Generating panels/moc_panel_bar_widget_holder.cpp
-[ 55%] Generating panels/moc_panel_manager.cpp
-[ 55%] Generating panels/moc_event_button.cpp
-[ 55%] Generating panels/moc_side_bar.cpp
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/panels/moc_button_bar.cpp_parameters
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/panels/moc_button_box.cpp_parameters
+[ 55%] Generating panels/moc_drop_box.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/panels/moc_drop_box.cpp_parameters
+[ 55%] Generating panels/moc_event_button.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/panels/moc_event_button.cpp_parameters
+[ 55%] Generating panels/moc_panel_bar.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/panels/moc_panel_bar.cpp_parameters
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/panels/moc_panel_bar_widget_holder.cpp_parameters
+[ 55%] Generating panels/moc_panel_manager.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/panels/moc_panel_manager.cpp_parameters
+[ 55%] Generating panels/moc_panel_bar_widget_holder.cpp
+[ 55%] Generating panels/moc_panel_widget_container.cpp
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/panels/moc_panel_bar_widget_holder.cpp_parameters
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/panels/moc_panel_widget_container.cpp_parameters
+[ 55%] Generating panels/moc_side_bar.cpp
+[ 56%] Generating panels/moc_tabbed_panel_bar.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/panels/moc_side_bar.cpp_parameters
-[ 55%] Generating panels/moc_splitter_panel_bar.cpp
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/panels/moc_tabbed_panel_bar.cpp_parameters
+[ 56%] Generating panels/moc_splitter_panel_bar.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/panels/moc_splitter_panel_bar.cpp_parameters
-[ 56%] Generating panels/moc_tabbed_panel_bar.cpp
-[ 56%] Generating python_shell/moc_gutter.cpp
[ 56%] Generating python_shell/moc_completer_base.cpp
-[ 56%] Generating python_shell/moc_main_thread_runner.cpp
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/panels/moc_tabbed_panel_bar.cpp_parameters
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell/moc_completer_base.cpp_parameters
-[ 56%] Generating python_shell/moc_python_interpreter_worker.cpp
+[ 56%] Generating python_shell/moc_gutter.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell/moc_gutter.cpp_parameters
+[ 56%] Generating python_shell/moc_main_thread_runner.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell/moc_main_thread_runner.cpp_parameters
-[ 56%] Generating python_shell/moc_path_completer.cpp
[ 56%] Generating python_shell/moc_output_redirector.cpp
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell/moc_python_interpreter_worker.cpp_parameters
-[ 56%] Generating python_shell/moc_python_completer.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell/moc_output_redirector.cpp_parameters
+[ 56%] Generating python_shell/moc_path_completer.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell/moc_path_completer.cpp_parameters
-[ 58%] Generating python_shell/moc_python_interpreter.cpp
-[ 58%] Generating python_shell/moc_python_namespace_tree_model.cpp
+[ 56%] Generating python_shell/moc_python_completer.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell/moc_python_completer.cpp_parameters
+[ 58%] Generating python_shell/moc_python_interpreter.cpp
+[ 58%] Generating python_shell/moc_python_interpreter_worker.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell/moc_python_interpreter.cpp_parameters
-[ 58%] Generating python_shell/moc_python_shell.cpp
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell/moc_python_interpreter_worker.cpp_parameters
+[ 58%] Generating python_shell/moc_python_namespace_tree_model.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell/moc_python_namespace_tree_model.cpp_parameters
+[ 58%] Generating python_shell/moc_python_shell.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell/moc_python_shell.cpp_parameters
-[ 58%] Generating python_shell/moc_python_shell_widget.cpp
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell/moc_python_shell_widget.cpp_parameters
[ 58%] Generating python_shell/moc_state.cpp
-[ 58%] Generating python_shell/moc_state_machine.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell/moc_state.cpp_parameters
+[ 58%] Generating python_shell/moc_state_machine.cpp
[ 58%] Generating python_shell/moc_text_logger.cpp
-[ 58%] Generating python_shell/moc_transition.cpp
-[ 58%] Generating python_shell/moc_transition_guard.cpp
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell/moc_transition_guard.cpp_parameters
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell/moc_state_machine.cpp_parameters
-[ 58%] Generating scene_win/moc_context_menu.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell/moc_text_logger.cpp_parameters
-[ 58%] Generating scene_win/moc_entity_node.cpp
-[ 58%] Generating scene_win/moc_entity_part_node.cpp
+[ 58%] Generating python_shell/moc_python_shell_widget.cpp
+[ 58%] Generating python_shell/moc_transition.cpp
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell/moc_python_shell_widget.cpp_parameters
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell/moc_transition.cpp_parameters
-[ 58%] Generating scene_win/moc_custom_part_node.cpp
+[ 58%] Generating scene_win/moc_context_menu.cpp
+[ 58%] Generating scene_win/moc_entity_node.cpp
[ 58%] Generating scene_win/moc_current_selection_node.cpp
+[ 58%] Generating python_shell/moc_transition_guard.cpp
+[ 58%] Generating scene_win/moc_custom_part_node.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/scene_win/moc_context_menu.cpp_parameters
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell/moc_transition_guard.cpp_parameters
+[ 58%] Generating scene_win/moc_entity_part_node.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/scene_win/moc_current_selection_node.cpp_parameters
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/scene_win/moc_custom_part_node.cpp_parameters
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/scene_win/moc_entity_node.cpp_parameters
@@ -20916,26 +21009,32 @@
[ 58%] Generating scene_win/moc_gfx_scene_node.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/scene_win/moc_gfx_scene_node.cpp_parameters
[ 58%] Generating scene_win/moc_label_node.cpp
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/scene_win/moc_label_node.cpp_parameters
[ 58%] Generating scene_win/moc_render_mode_node.cpp
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/scene_win/moc_label_node.cpp_parameters
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/scene_win/moc_render_mode_node.cpp_parameters
-[ 58%] Generating scene_win/moc_render_modes_node.cpp
[ 58%] Generating scene_win/moc_root_node.cpp
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/scene_win/moc_render_modes_node.cpp_parameters
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/scene_win/moc_root_node.cpp_parameters
+[ 58%] Generating scene_win/moc_render_modes_node.cpp
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/scene_win/moc_render_modes_node.cpp_parameters
[ 59%] Generating scene_win/moc_scene_node.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/scene_win/moc_scene_node.cpp_parameters
-[ 59%] Generating scene_win/moc_scene_win_model.cpp
[ 59%] Generating scene_win/moc_scene_win.cpp
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/scene_win/moc_scene_win_model.cpp_parameters
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/scene_win/moc_scene_win.cpp_parameters
+[ 59%] Linking CXX shared module ../../../../stage/lib/python3.13/dist-packages/ost/seq/_ost_seq.so
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_seq.dir/link.txt --verbose=1
+[ 59%] Generating scene_win/moc_scene_win_model.cpp
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/scene_win/moc_scene_win_model.cpp_parameters
[ 59%] Generating sequence_viewer/moc_align_properties_painter.cpp
-[ 59%] Generating sequence_viewer/moc_alignment_view_object.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer/moc_align_properties_painter.cpp_parameters
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_ost_seq.dir/link.d -Wl,-z,relro -shared -o ../../../../stage/lib/python3.13/dist-packages/ost/seq/_ost_seq.so CMakeFiles/_ost_seq.dir/export_sequence.cc.o CMakeFiles/_ost_seq.dir/export_profile_handle.cc.o CMakeFiles/_ost_seq.dir/wrap_seq.cc.o -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib: ../../../../stage/lib/libost_seq.so.2.9.2 /usr/lib/i386-linux-gnu/libpython3.13.so /usr/lib/i386-linux-gnu/libboost_python313.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_iostreams.so.1.83.0 ../../../../stage/lib/libost_mol.so.2.9.2 ../../../../stage/lib/libost_info.so.2.9.2 ../../../../stage/lib/libost_base.so.2.9.2 ../../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/seq/base/pymod/__init__.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/seq/./__init__.pyc\",\"__init__.py\",doraise=True)"
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 59%] Generating sequence_viewer/moc_alignment_view_object.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer/moc_alignment_view_object.cpp_parameters
+[ 59%] Built target _ost_seq
[ 59%] Generating sequence_viewer/moc_background_painter.cpp
-[ 59%] Generating sequence_viewer/moc_base_row.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer/moc_background_painter.cpp_parameters
+[ 59%] Generating sequence_viewer/moc_base_row.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer/moc_base_row.cpp_parameters
[ 59%] Generating sequence_viewer/moc_base_view_object.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer/moc_base_view_object.cpp_parameters
@@ -20950,127 +21049,129 @@
[ 60%] Generating sequence_viewer/moc_seq_selection_painter.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer/moc_seq_selection_painter.cpp_parameters
[ 60%] Generating sequence_viewer/moc_seq_text_painter.cpp
-[ 60%] Generating sequence_viewer/moc_sequence_model.cpp
-[ 60%] Generating sequence_viewer/moc_sequence_delegate.cpp
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_model.cpp_parameters
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer/moc_seq_text_painter.cpp_parameters
+[ 60%] Generating sequence_viewer/moc_sequence_delegate.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_delegate.cpp_parameters
+[ 60%] Generating sequence_viewer/moc_sequence_model.cpp
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_model.cpp_parameters
[ 60%] Generating sequence_viewer/moc_sequence_row.cpp
-[ 60%] Generating sequence_viewer/moc_sequence_table_view.cpp
-[ 60%] Generating sequence_viewer/moc_sequence_search_bar.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_row.cpp_parameters
+[ 60%] Generating sequence_viewer/moc_sequence_search_bar.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_search_bar.cpp_parameters
-[ 60%] Generating sequence_viewer/moc_sequence_view_object.cpp
+[ 60%] Generating sequence_viewer/moc_sequence_table_view.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_table_view.cpp_parameters
+[ 60%] Generating sequence_viewer/moc_sequence_view_object.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_view_object.cpp_parameters
+[ 60%] Generating sequence_viewer/moc_sequence_viewer.cpp
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_viewer.cpp_parameters
[ 62%] Generating sequence_viewer/moc_tick_painter.cpp
-[ 62%] Generating sequence_viewer/moc_sequence_viewer.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer/moc_tick_painter.cpp_parameters
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_viewer.cpp_parameters
-[ 63%] Generating tools/moc_measure_tool.cpp
-[ 63%] Generating sequence_viewer/moc_title_row.cpp
+[ 62%] Generating sequence_viewer/moc_title_row.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer/moc_title_row.cpp_parameters
+[ 63%] Generating tools/moc_measure_tool.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/tools/moc_measure_tool.cpp_parameters
[ 63%] Generating tools/moc_tool.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/tools/moc_tool.cpp_parameters
[ 63%] Generating tools/moc_tool_bar.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/tools/moc_tool_bar.cpp_parameters
[ 63%] Generating tools/moc_tool_manager.cpp
-[ 63%] Generating tools/moc_tool_option.cpp
-[ 63%] Generating tools/moc_tool_option_group.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/tools/moc_tool_manager.cpp_parameters
+[ 63%] Generating tools/moc_tool_option.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/tools/moc_tool_option.cpp_parameters
+[ 63%] Generating tools/moc_tool_option_group.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/tools/moc_tool_option_group.cpp_parameters
[ 63%] Generating tools/moc_tool_options.cpp
-[ 63%] Generating tools/moc_tool_options_widget.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/tools/moc_tool_options.cpp_parameters
+[ 63%] Generating tools/moc_tool_options_widget.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/tools/moc_tool_options_widget.cpp_parameters
-/build/reproducible-path/openstructure-2.9.2/modules/conop/src/chemdict_tool.cc: In function 'int main(int, const char**)':
-/build/reproducible-path/openstructure-2.9.2/modules/conop/src/chemdict_tool.cc:96:57: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations]
- 96 | if (boost::iequals(".gz", boost::filesystem::extension(argv[2]))) {
- | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
-In file included from /build/reproducible-path/openstructure-2.9.2/modules/conop/src/chemdict_tool.cc:27:
-/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here
- 29 | inline std::string extension(const path& p)
- | ^~~~~~~~~
+make -f modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build.make modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/depend
+make -f modules/db/pymod/CMakeFiles/_ost_db.dir/build.make modules/db/pymod/CMakeFiles/_ost_db.dir/depend
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/db/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/pymod/CMakeFiles/_ost_db.dir/DependInfo.cmake "--color="
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/db/pymod/CMakeFiles/_ost_db.dir/build.make modules/db/pymod/CMakeFiles/_ost_db.dir/build
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build.make modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 63%] Building CXX object modules/db/pymod/CMakeFiles/_ost_db.dir/export_linear_db.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_db_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/db/pymod/CMakeFiles/_ost_db.dir/export_linear_db.cc.o -MF CMakeFiles/_ost_db.dir/export_linear_db.cc.o.d -o CMakeFiles/_ost_db.dir/export_linear_db.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/db/pymod/export_linear_db.cc
+[ 63%] Building CXX object modules/db/pymod/CMakeFiles/_ost_db.dir/wrap_db.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_db_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/db/pymod/CMakeFiles/_ost_db.dir/wrap_db.cc.o -MF CMakeFiles/_ost_db.dir/wrap_db.cc.o.d -o CMakeFiles/_ost_db.dir/wrap_db.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/db/pymod/wrap_db.cc
+[ 63%] Building CXX object modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/export_tmalign.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_bindings_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/export_tmalign.cc.o -MF CMakeFiles/_ost_bindings.dir/export_tmalign.cc.o.d -o CMakeFiles/_ost_bindings.dir/export_tmalign.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/export_tmalign.cc
+[ 63%] Building CXX object modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/wrap_bindings.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_bindings_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/wrap_bindings.cc.o -MF CMakeFiles/_ost_bindings.dir/wrap_bindings.cc.o.d -o CMakeFiles/_ost_bindings.dir/wrap_bindings.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/wrap_bindings.cc
+make -f modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build.make modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/depend
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/DependInfo.cmake "--color="
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build.make modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 63%] Building CXX object modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/wrap_seq_alg.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/wrap_seq_alg.cc.o -MF CMakeFiles/_ost_seq_alg.dir/wrap_seq_alg.cc.o.d -o CMakeFiles/_ost_seq_alg.dir/wrap_seq_alg.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/pymod/wrap_seq_alg.cc
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/gui/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/CMakeFiles/ost_gui.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make -f modules/gui/src/CMakeFiles/ost_gui.dir/build.make modules/gui/src/CMakeFiles/ost_gui.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 63%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_file_type_dialog.cpp.o
-[ 64%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_gl_canvas.cpp.o
[ 64%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_file_browser.cpp.o
-[ 64%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_scene_menu.cpp.o
-[ 64%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_gl_win.cpp.o
-[ 64%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_file_viewer.cpp.o
-[ 64%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_dock_widget.cpp.o
-[ 64%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_gosty_app.cpp.o
-[ 65%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_main_window.cpp.o
-[ 65%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_widget.cpp.o
-[ 65%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_perspective.cpp.o
-[ 65%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_main_area.cpp.o
-[ 65%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_main.cpp.o
-[ 65%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_widget_geom_handler.cpp.o
-[ 65%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_scene_selection.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_file_browser.cpp.o -MF CMakeFiles/ost_gui.dir/moc_file_browser.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_file_browser.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/moc_file_browser.cpp
+[ 64%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_file_type_dialog.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_file_type_dialog.cpp.o -MF CMakeFiles/ost_gui.dir/moc_file_type_dialog.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_file_type_dialog.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/moc_file_type_dialog.cpp
+[ 64%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_file_viewer.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_file_viewer.cpp.o -MF CMakeFiles/ost_gui.dir/moc_file_viewer.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_file_viewer.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/moc_file_viewer.cpp
-[ 65%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_widget_pool.cpp.o
+[ 64%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_gl_canvas.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_gl_canvas.cpp.o -MF CMakeFiles/ost_gui.dir/moc_gl_canvas.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_gl_canvas.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/moc_gl_canvas.cpp
+[ 64%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_gl_win.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_gl_win.cpp.o -MF CMakeFiles/ost_gui.dir/moc_gl_win.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_gl_win.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/moc_gl_win.cpp
+[ 64%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_gosty_app.cpp.o
+[ 64%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_scene_menu.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_scene_menu.cpp.o -MF CMakeFiles/ost_gui.dir/moc_scene_menu.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_scene_menu.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/moc_scene_menu.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_gosty_app.cpp.o -MF CMakeFiles/ost_gui.dir/moc_gosty_app.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_gosty_app.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/moc_gosty_app.cpp
+[ 64%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_main.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_main.cpp.o -MF CMakeFiles/ost_gui.dir/moc_main.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_main.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/moc_main.cpp
+[ 64%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_main_area.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_main_area.cpp.o -MF CMakeFiles/ost_gui.dir/moc_main_area.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_main_area.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/moc_main_area.cpp
+[ 64%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_perspective.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_perspective.cpp.o -MF CMakeFiles/ost_gui.dir/moc_perspective.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_perspective.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/moc_perspective.cpp
+[ 64%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_dock_widget.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_dock_widget.cpp.o -MF CMakeFiles/ost_gui.dir/moc_dock_widget.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_dock_widget.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/moc_dock_widget.cpp
+[ 65%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_widget_geom_handler.cpp.o
+[ 64%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_scene_selection.cpp.o
+[ 65%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_widget.cpp.o
+[ 65%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_main_window.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_main_window.cpp.o -MF CMakeFiles/ost_gui.dir/moc_main_window.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_main_window.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/moc_main_window.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_scene_selection.cpp.o -MF CMakeFiles/ost_gui.dir/moc_scene_selection.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_scene_selection.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/moc_scene_selection.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_widget.cpp.o -MF CMakeFiles/ost_gui.dir/moc_widget.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_widget.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/moc_widget.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_widget_geom_handler.cpp.o -MF CMakeFiles/ost_gui.dir/moc_widget_geom_handler.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_widget_geom_handler.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/moc_widget_geom_handler.cpp
+[ 65%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_widget_pool.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_widget_pool.cpp.o -MF CMakeFiles/ost_gui.dir/moc_widget_pool.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_widget_pool.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/moc_widget_pool.cpp
+/build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/export_tmalign.cc: In function 'ost::bindings::MMAlignResult WrapMMAlignView(const ost::mol::EntityView&, const ost::mol::EntityView&, bool, boost::python::dict&)':
+/build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/export_tmalign.cc:48:21: warning: comparison of integer expressions of different signedness: 'uint' {aka 'unsigned int'} and 'boost::python::ssize_t' {aka 'int'} [-Wsign-compare]
+ 48 | for(uint i = 0; i < boost::python::len(keys); ++i) {
+ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~
[ 65%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/moc_message_widget.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/messages/moc_message_widget.cpp.o -MF CMakeFiles/ost_gui.dir/messages/moc_message_widget.cpp.o.d -o CMakeFiles/ost_gui.dir/messages/moc_message_widget.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/messages/moc_message_widget.cpp
-[ 65%] Linking CXX executable ../../../stage/bin/test_mae_standalone
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_mae_standalone.dir/link.txt --verbose=1
-/build/reproducible-path/openstructure-2.9.2/tools/molck/main.cc: In function 'ost::conop::CompoundLibPtr load_compound_lib(const String&)':
-/build/reproducible-path/openstructure-2.9.2/tools/molck/main.cc:119:48: warning: 'boost::filesystem::path boost::filesystem::path::branch_path() const' is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations]
- 119 | fs::path path_only=path_and_exe.branch_path();
- | ~~~~~~~~~~~~~~~~~~~~~~~~^~
-In file included from /build/reproducible-path/openstructure-2.9.2/tools/molck/main.cc:3:
-/usr/include/boost/filesystem/path.hpp:1129:10: note: declared here
- 1129 | path branch_path() const { return parent_path(); }
- | ^~~~~~~~~~~
-/build/reproducible-path/openstructure-2.9.2/tools/molck/main.cc:120:48: warning: 'boost::filesystem::path boost::filesystem::path::branch_path() const' is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations]
- 120 | fs::path share_path = path_only.branch_path();
- | ~~~~~~~~~~~~~~~~~~~~~^~
-/usr/include/boost/filesystem/path.hpp:1129:10: note: declared here
- 1129 | path branch_path() const { return parent_path(); }
- | ^~~~~~~~~~~
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/test_mae_standalone.dir/link.d CMakeFiles/test_mae_standalone.dir/test_mae_standalone.cc.o -o ../../../stage/bin/test_mae_standalone -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib ../../../stage/lib/libost_io.so.2.9.2 ../../../stage/lib/libost_mol_alg.so.2.9.2 ../../../stage/lib/libost_conop.so.2.9.2 ../../../stage/lib/libost_db.so.2.9.2 /usr/lib/i386-linux-gnu/libsqlite3.so /usr/lib/i386-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_thread.so.1.83.0 ../../../stage/lib/libost_seq_alg.so.2.9.2 ../../../stage/lib/libost_seq.so.2.9.2 ../../../stage/lib/libost_mol.so.2.9.2 ../../../stage/lib/libost_img_alg.so.2.9.2 ../../../stage/lib/libost_img.so.2.9.2 ../../../stage/lib/libost_info.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 ../../../stage/lib/libost_base.so.2.9.2 ../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libfftw3f_threads.so /usr/lib/i386-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/i386-linux-gnu/libtiff.so /usr/lib/i386-linux-gnu/libpng.so /usr/lib/i386-linux-gnu/libz.so
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-/build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/lddt.cc: In function 'ost::conop::CompoundLibPtr load_compound_lib(const String&)':
-/build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/lddt.cc:138:48: warning: 'boost::filesystem::path boost::filesystem::path::branch_path() const' is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations]
- 138 | fs::path path_only=path_and_exe.branch_path();
- | ~~~~~~~~~~~~~~~~~~~~~~~~^~
-In file included from /usr/include/boost/filesystem/fstream.hpp:17,
- from /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/lddt.cc:26:
-/usr/include/boost/filesystem/path.hpp:1129:10: note: declared here
- 1129 | path branch_path() const { return parent_path(); }
- | ^~~~~~~~~~~
-/build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/lddt.cc:139:48: warning: 'boost::filesystem::path boost::filesystem::path::branch_path() const' is deprecated: Use path::parent_path() instead [-Wdeprecated-declarations]
- 139 | fs::path share_path = path_only.branch_path();
- | ~~~~~~~~~~~~~~~~~~~~~^~
-/usr/include/boost/filesystem/path.hpp:1129:10: note: declared here
- 1129 | path branch_path() const { return parent_path(); }
- | ^~~~~~~~~~~
-[ 65%] Built target test_mae_standalone
[ 65%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/moc_message_box_widget.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/messages/moc_message_box_widget.cpp.o -MF CMakeFiles/ost_gui.dir/messages/moc_message_box_widget.cpp.o.d -o CMakeFiles/ost_gui.dir/messages/moc_message_box_widget.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/messages/moc_message_box_widget.cpp
[ 65%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/moc_log_reader.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/messages/moc_log_reader.cpp.o -MF CMakeFiles/ost_gui.dir/messages/moc_log_reader.cpp.o.d -o CMakeFiles/ost_gui.dir/messages/moc_log_reader.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/messages/moc_log_reader.cpp
[ 65%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_align_properties_painter.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_align_properties_painter.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_align_properties_painter.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_align_properties_painter.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer/moc_align_properties_painter.cpp
+In file included from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/../../../../modules/gui/src/main.hh:28,
+ from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/moc_main.cpp:10:
+/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/../../../../modules/gui/src/widget_state_saver.hh: In instantiation of 'ost::gui::WidgetStateSaver<BASE>::~WidgetStateSaver() [with BASE = QMainWindow]':
+/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/../../../../modules/gui/src/main.hh:40:25: required from here
+ 40 | class DLLEXPORT_OST_GUI GostyMainWindow : public WidgetStateSaver<QMainWindow>
+ | ^~~~~~~~~~~~~~~
+/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/../../../../modules/gui/src/widget_state_saver.hh:323:8: warning: the address of 'ost::gui::WidgetStateSaver<QMainWindow>::QMainWindow' will never be NULL [-Waddress]
+ 323 | if(dynamic_cast<QMainWindow* >(this)){
+ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/../../../../modules/gui/src/widget_state_saver.hh:263:7: note: 'ost::gui::WidgetStateSaver<QMainWindow>::QMainWindow' declared here
+ 263 | class WidgetStateSaver<BASE>: public BASE
+ | ^~~~~~~~~~~~~~~~~~~~~~
[ 65%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_background_painter.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_background_painter.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_background_painter.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_background_painter.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer/moc_background_painter.cpp
[ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_base_row.cpp.o
@@ -21083,25 +21184,49 @@
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_secstr_row.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_secstr_row.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_secstr_row.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer/moc_secstr_row.cpp
[ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_secstr_painter.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_secstr_painter.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_secstr_painter.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_secstr_painter.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer/moc_seq_secstr_painter.cpp
+[ 67%] Linking CXX shared module ../../../stage/lib/python3.13/dist-packages/ost/bindings/_ost_bindings.so
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_bindings.dir/link.txt --verbose=1
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_ost_bindings.dir/link.d -Wl,-z,relro -shared -o ../../../stage/lib/python3.13/dist-packages/ost/bindings/_ost_bindings.so CMakeFiles/_ost_bindings.dir/export_tmalign.cc.o CMakeFiles/_ost_bindings.dir/wrap_bindings.cc.o -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib: ../../../stage/lib/libost_bindings.so.2.9.2 /usr/lib/i386-linux-gnu/libpython3.13.so /usr/lib/i386-linux-gnu/libboost_python313.so.1.83.0 ../../../stage/lib/libost_seq.so.2.9.2 ../../../stage/lib/libost_mol.so.2.9.2 ../../../stage/lib/libost_info.so.2.9.2 ../../../stage/lib/libost_base.so.2.9.2 ../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/i386-linux-gnu/libboost_iostreams.so.1.83.0
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/__init__.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./__init__.pyc\",\"__init__.py\",doraise=True)"
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/lga.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./lga.pyc\",\"lga.py\",doraise=True)"
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/hbplus.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./hbplus.pyc\",\"hbplus.py\",doraise=True)"
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/msms.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./msms.pyc\",\"msms.py\",doraise=True)"
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/tmtools.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./tmtools.pyc\",\"tmtools.py\",doraise=True)"
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/dssp.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./dssp.pyc\",\"dssp.py\",doraise=True)"
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/clustalw.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./clustalw.pyc\",\"clustalw.py\",doraise=True)"
[ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_selection_painter.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_selection_painter.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_selection_painter.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_selection_painter.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer/moc_seq_selection_painter.cpp
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/utils.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./utils.pyc\",\"utils.py\",doraise=True)"
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/naccess.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./naccess.pyc\",\"naccess.py\",doraise=True)"
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/hhblits.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./hhblits.pyc\",\"hhblits.py\",doraise=True)"
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/hhblits2.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./hhblits2.pyc\",\"hhblits2.py\",doraise=True)"
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/hhblits3.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./hhblits3.pyc\",\"hhblits3.py\",doraise=True)"
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/blast.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./blast.pyc\",\"blast.py\",doraise=True)"
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/cadscore.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./cadscore.pyc\",\"cadscore.py\",doraise=True)"
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/kclust.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./kclust.pyc\",\"kclust.py\",doraise=True)"
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/ialign.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./ialign.pyc\",\"ialign.py\",doraise=True)"
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/mmseqs2.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./mmseqs2.pyc\",\"mmseqs2.py\",doraise=True)"
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/dockq.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./dockq.pyc\",\"dockq.py\",doraise=True)"
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
[ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_text_painter.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_text_painter.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_text_painter.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_text_painter.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer/moc_seq_text_painter.cpp
[ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_delegate.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_delegate.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_delegate.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_delegate.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_delegate.cpp
-[ 67%] Linking CXX executable ../../../stage/bin/chemdict_tool
+[ 67%] Built target _ost_bindings
[ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_model.cpp.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemdict_tool.dir/link.txt --verbose=1
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_model.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_model.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_model.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_model.cpp
[ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_row.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_row.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_row.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_row.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_row.cpp
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/chemdict_tool.dir/link.d CMakeFiles/chemdict_tool.dir/chemdict_tool.cc.o -o ../../../stage/bin/chemdict_tool -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib: ../../../stage/lib/libost_io.so.2.9.2 ../../../stage/lib/libost_mol_alg.so.2.9.2 ../../../stage/lib/libost_conop.so.2.9.2 ../../../stage/lib/libost_db.so.2.9.2 /usr/lib/i386-linux-gnu/libsqlite3.so /usr/lib/i386-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_thread.so.1.83.0 ../../../stage/lib/libost_seq_alg.so.2.9.2 ../../../stage/lib/libost_seq.so.2.9.2 ../../../stage/lib/libost_mol.so.2.9.2 ../../../stage/lib/libost_img_alg.so.2.9.2 ../../../stage/lib/libost_img.so.2.9.2 ../../../stage/lib/libost_info.so.2.9.2 ../../../stage/lib/libost_base.so.2.9.2 ../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libfftw3f_threads.so /usr/lib/i386-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/i386-linux-gnu/libtiff.so /usr/lib/i386-linux-gnu/libpng.so /usr/lib/i386-linux-gnu/libz.so
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 67%] Built target chemdict_tool
[ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_search_bar.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_search_bar.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_search_bar.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_search_bar.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_search_bar.cpp
+[ 67%] Linking CXX shared module ../../../stage/lib/python3.13/dist-packages/ost/db/_ost_db.so
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_db.dir/link.txt --verbose=1
[ 68%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_table_view.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_table_view.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_table_view.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_table_view.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_table_view.cpp
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_ost_db.dir/link.d -Wl,-z,relro -shared -o ../../../stage/lib/python3.13/dist-packages/ost/db/_ost_db.so CMakeFiles/_ost_db.dir/export_linear_db.cc.o CMakeFiles/_ost_db.dir/wrap_db.cc.o -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib: ../../../stage/lib/libost_db.so.2.9.2 /usr/lib/i386-linux-gnu/libpython3.13.so /usr/lib/i386-linux-gnu/libboost_python313.so.1.83.0 /usr/lib/i386-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_iostreams.so.1.83.0 ../../../stage/lib/libost_mol.so.2.9.2 ../../../stage/lib/libost_info.so.2.9.2 ../../../stage/lib/libost_base.so.2.9.2 ../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/db/pymod/__init__.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/db/./__init__.pyc\",\"__init__.py\",doraise=True)"
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 68%] Built target _ost_db
[ 68%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_viewer.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_viewer.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_viewer.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_viewer.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_viewer.cpp
[ 68%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_tick_painter.cpp.o
@@ -21111,51 +21236,31 @@
[ 68%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_alignment_view_object.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_alignment_view_object.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_alignment_view_object.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_alignment_view_object.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer/moc_alignment_view_object.cpp
[ 68%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_base_view_object.cpp.o
-[ 68%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_main_thread_runner.cpp.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_base_view_object.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_base_view_object.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_base_view_object.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer/moc_base_view_object.cpp
+make -f modules/conop/pymod/CMakeFiles/_ost_conop.dir/build.make modules/conop/pymod/CMakeFiles/_ost_conop.dir/depend
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/conop/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/pymod/CMakeFiles/_ost_conop.dir/DependInfo.cmake "--color="
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/conop/pymod/CMakeFiles/_ost_conop.dir/build.make modules/conop/pymod/CMakeFiles/_ost_conop.dir/build
+make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 68%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/wrap_conop.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/wrap_conop.cc.o -MF CMakeFiles/_ost_conop.dir/wrap_conop.cc.o.d -o CMakeFiles/_ost_conop.dir/wrap_conop.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/conop/pymod/wrap_conop.cc
[ 68%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_view_object.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_view_object.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_view_object.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_view_object.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_view_object.cpp
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_base_view_object.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_base_view_object.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_base_view_object.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/sequence_viewer/moc_base_view_object.cpp
+[ 68%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_main_thread_runner.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_main_thread_runner.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_main_thread_runner.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_main_thread_runner.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell/moc_main_thread_runner.cpp
+[ 68%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_compound.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_compound.cc.o -MF CMakeFiles/_ost_conop.dir/export_compound.cc.o.d -o CMakeFiles/_ost_conop.dir/export_compound.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/conop/pymod/export_compound.cc
[ 68%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_completer_base.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_completer_base.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_completer_base.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_completer_base.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell/moc_completer_base.cpp
[ 68%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_gutter.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_gutter.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_gutter.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_gutter.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell/moc_gutter.cpp
-[ 69%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_path_completer.cpp.o
[ 68%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_output_redirector.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_output_redirector.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_output_redirector.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_output_redirector.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell/moc_output_redirector.cpp
+[ 69%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_processor.cc.o
+[ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_path_completer.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_path_completer.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_path_completer.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_path_completer.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell/moc_path_completer.cpp
-[ 69%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_completer.cpp.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_completer.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_python_completer.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_python_completer.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell/moc_python_completer.cpp
-[ 69%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter.cpp.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell/moc_python_interpreter.cpp
-In file included from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/../../../../modules/gui/src/main.hh:28,
- from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/moc_main.cpp:10:
-/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/../../../../modules/gui/src/widget_state_saver.hh: In instantiation of 'ost::gui::WidgetStateSaver<BASE>::~WidgetStateSaver() [with BASE = QMainWindow]':
-/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/../../../../modules/gui/src/main.hh:40:25: required from here
- 40 | class DLLEXPORT_OST_GUI GostyMainWindow : public WidgetStateSaver<QMainWindow>
- | ^~~~~~~~~~~~~~~
-/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/../../../../modules/gui/src/widget_state_saver.hh:323:8: warning: the address of 'ost::gui::WidgetStateSaver<QMainWindow>::QMainWindow' will never be NULL [-Waddress]
- 323 | if(dynamic_cast<QMainWindow* >(this)){
- | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/../../../../modules/gui/src/widget_state_saver.hh:263:7: note: 'ost::gui::WidgetStateSaver<QMainWindow>::QMainWindow' declared here
- 263 | class WidgetStateSaver<BASE>: public BASE
- | ^~~~~~~~~~~~~~~~~~~~~~
-[ 69%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter_worker.cpp.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter_worker.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter_worker.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter_worker.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell/moc_python_interpreter_worker.cpp
-[ 69%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_namespace_tree_model.cpp.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_namespace_tree_model.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_python_namespace_tree_model.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_python_namespace_tree_model.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell/moc_python_namespace_tree_model.cpp
-[ 69%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_shell.cpp.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_shell.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_python_shell.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_python_shell.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell/moc_python_shell.cpp
-[ 69%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_shell_widget.cpp.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_shell_widget.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_python_shell_widget.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_python_shell_widget.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell/moc_python_shell_widget.cpp
-[ 69%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_text_logger.cpp.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_text_logger.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_text_logger.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_text_logger.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell/moc_text_logger.cpp
-[ 69%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_state_machine.cpp.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_state_machine.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_state_machine.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_state_machine.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell/moc_state_machine.cpp
-[ 69%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_state.cpp.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_state.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_state.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_state.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell/moc_state.cpp
-[ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_transition.cpp.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_transition.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_transition.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_transition.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell/moc_transition.cpp
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_processor.cc.o -MF CMakeFiles/_ost_conop.dir/export_processor.cc.o.d -o CMakeFiles/_ost_conop.dir/export_processor.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/conop/pymod/export_processor.cc
In file included from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/gfx_object_base.hh:34,
from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/gfx_object.hh:40,
from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38,
@@ -21168,64 +21273,90 @@
/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/gfx_object.hh:58:16: note: by 'virtual void ost::gfx::GfxObj::DeepSwap(ost::gfx::GfxObj&)'
58 | virtual void DeepSwap(GfxObj& go);
| ^~~~~~~~
-[ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_transition_guard.cpp.o
+[ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_completer.cpp.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_completer.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_python_completer.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_python_completer.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell/moc_python_completer.cpp
+[ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter.cpp.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell/moc_python_interpreter.cpp
+[ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter_worker.cpp.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter_worker.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter_worker.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter_worker.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell/moc_python_interpreter_worker.cpp
+[ 70%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_heuristic.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_heuristic.cc.o -MF CMakeFiles/_ost_conop.dir/export_heuristic.cc.o.d -o CMakeFiles/_ost_conop.dir/export_heuristic.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/conop/pymod/export_heuristic.cc
+[ 70%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_amino_acids.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_amino_acids.cc.o -MF CMakeFiles/_ost_conop.dir/export_amino_acids.cc.o.d -o CMakeFiles/_ost_conop.dir/export_amino_acids.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/conop/pymod/export_amino_acids.cc
+[ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_namespace_tree_model.cpp.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_namespace_tree_model.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_python_namespace_tree_model.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_python_namespace_tree_model.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell/moc_python_namespace_tree_model.cpp
+[ 70%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_conop.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_conop.cc.o -MF CMakeFiles/_ost_conop.dir/export_conop.cc.o.d -o CMakeFiles/_ost_conop.dir/export_conop.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/conop/pymod/export_conop.cc
+[ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_shell.cpp.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_shell.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_python_shell.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_python_shell.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell/moc_python_shell.cpp
+[ 70%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_diag.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_diag.cc.o -MF CMakeFiles/_ost_conop.dir/export_diag.cc.o.d -o CMakeFiles/_ost_conop.dir/export_diag.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/conop/pymod/export_diag.cc
+[ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_shell_widget.cpp.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_shell_widget.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_python_shell_widget.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_python_shell_widget.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell/moc_python_shell_widget.cpp
+[ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_state_machine.cpp.o
+[ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_text_logger.cpp.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_text_logger.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_text_logger.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_text_logger.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell/moc_text_logger.cpp
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_state_machine.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_state_machine.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_state_machine.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell/moc_state_machine.cpp
+[ 72%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_transition.cpp.o
+[ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_state.cpp.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_transition.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_transition.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_transition.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell/moc_transition.cpp
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_state.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_state.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_state.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell/moc_state.cpp
+[ 72%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_transition_guard.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_transition_guard.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_transition_guard.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_transition_guard.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/python_shell/moc_transition_guard.cpp
-[ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_button_bar.cpp.o
+[ 72%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_rule_based.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_rule_based.cc.o -MF CMakeFiles/_ost_conop.dir/export_rule_based.cc.o.d -o CMakeFiles/_ost_conop.dir/export_rule_based.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/conop/pymod/export_rule_based.cc
+[ 72%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_button_bar.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_button_bar.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_button_bar.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_button_bar.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/panels/moc_button_bar.cpp
-[ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_drop_box.cpp.o
+[ 72%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_ring_finder.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_ring_finder.cc.o -MF CMakeFiles/_ost_conop.dir/export_ring_finder.cc.o.d -o CMakeFiles/_ost_conop.dir/export_ring_finder.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/conop/pymod/export_ring_finder.cc
+[ 72%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_drop_box.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_drop_box.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_drop_box.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_drop_box.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/panels/moc_drop_box.cpp
-[ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_bar.cpp.o
-[ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_manager.cpp.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_manager.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_panel_manager.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_panel_manager.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/panels/moc_panel_manager.cpp
+[ 72%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_bar.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_bar.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_panel_bar.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_panel_bar.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/panels/moc_panel_bar.cpp
-[ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_bottom_bar.cpp.o
+[ 72%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_manager.cpp.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_manager.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_panel_manager.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_panel_manager.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/panels/moc_panel_manager.cpp
+[ 72%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_bottom_bar.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_bottom_bar.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_bottom_bar.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_bottom_bar.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/panels/moc_bottom_bar.cpp
-[ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_button_box.cpp.o
+[ 72%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_event_button.cpp.o
+[ 72%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_button_box.cpp.o
+[ 72%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_widget_container.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_button_box.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_button_box.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_button_box.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/panels/moc_button_box.cpp
-[ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_event_button.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_event_button.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_event_button.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_event_button.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/panels/moc_event_button.cpp
-[ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_widget_container.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_widget_container.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_panel_widget_container.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_panel_widget_container.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/panels/moc_panel_widget_container.cpp
-[ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_bar_widget_holder.cpp.o
+[ 72%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_bar_widget_holder.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_bar_widget_holder.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_panel_bar_widget_holder.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_panel_bar_widget_holder.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/panels/moc_panel_bar_widget_holder.cpp
-[ 72%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_side_bar.cpp.o
+[ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_side_bar.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_side_bar.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_side_bar.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_side_bar.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/panels/moc_side_bar.cpp
-[ 72%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_splitter_panel_bar.cpp.o
+[ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_splitter_panel_bar.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_splitter_panel_bar.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_splitter_panel_bar.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_splitter_panel_bar.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/panels/moc_splitter_panel_bar.cpp
-[ 72%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_tabbed_panel_bar.cpp.o
+[ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_tabbed_panel_bar.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_tabbed_panel_bar.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_tabbed_panel_bar.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_tabbed_panel_bar.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/panels/moc_tabbed_panel_bar.cpp
-[ 72%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_context_menu.cpp.o
+[ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_context_menu.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_context_menu.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_context_menu.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_context_menu.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/scene_win/moc_context_menu.cpp
-[ 72%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_current_selection_node.cpp.o
+[ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_current_selection_node.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_current_selection_node.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_current_selection_node.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_current_selection_node.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/scene_win/moc_current_selection_node.cpp
-[ 72%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_custom_part_node.cpp.o
+[ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_custom_part_node.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_custom_part_node.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_custom_part_node.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_custom_part_node.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/scene_win/moc_custom_part_node.cpp
-[ 72%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_gfx_scene_node.cpp.o
+[ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_gfx_scene_node.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_gfx_scene_node.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_gfx_scene_node.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_gfx_scene_node.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/scene_win/moc_gfx_scene_node.cpp
-[ 72%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_label_node.cpp.o
+[ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_label_node.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_label_node.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_label_node.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_label_node.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/scene_win/moc_label_node.cpp
-[ 72%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_entity_node.cpp.o
+[ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_entity_node.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_entity_node.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_entity_node.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_entity_node.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/scene_win/moc_entity_node.cpp
-[ 72%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_entity_part_node.cpp.o
+[ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_entity_part_node.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_entity_part_node.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_entity_part_node.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_entity_part_node.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/scene_win/moc_entity_part_node.cpp
-[ 72%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_render_mode_node.cpp.o
+[ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_render_mode_node.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_render_mode_node.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_render_mode_node.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_render_mode_node.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/scene_win/moc_render_mode_node.cpp
-[ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_render_modes_node.cpp.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_render_modes_node.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_render_modes_node.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_render_modes_node.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/scene_win/moc_render_modes_node.cpp
[ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_root_node.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_root_node.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_root_node.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_root_node.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/scene_win/moc_root_node.cpp
-[ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_scene_node.cpp.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_scene_node.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_scene_node.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_scene_node.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/scene_win/moc_scene_node.cpp
-[ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_scene_win.cpp.o
+[ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_render_modes_node.cpp.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_render_modes_node.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_render_modes_node.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_render_modes_node.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/scene_win/moc_render_modes_node.cpp
+[ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_scene_win.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_scene_win.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_scene_win.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_scene_win.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/scene_win/moc_scene_win.cpp
-[ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_scene_win_model.cpp.o
+[ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_scene_node.cpp.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_scene_node.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_scene_node.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_scene_node.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/scene_win/moc_scene_node.cpp
+[ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_scene_win_model.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_scene_win_model.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_scene_win_model.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_scene_win_model.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/scene_win/moc_scene_win_model.cpp
-[ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool.cpp.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool.cpp.o -MF CMakeFiles/ost_gui.dir/tools/moc_tool.cpp.o.d -o CMakeFiles/ost_gui.dir/tools/moc_tool.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/tools/moc_tool.cpp
-[ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_option_group.cpp.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_option_group.cpp.o -MF CMakeFiles/ost_gui.dir/tools/moc_tool_option_group.cpp.o.d -o CMakeFiles/ost_gui.dir/tools/moc_tool_option_group.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/tools/moc_tool_option_group.cpp
-[ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_options.cpp.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_options.cpp.o -MF CMakeFiles/ost_gui.dir/tools/moc_tool_options.cpp.o.d -o CMakeFiles/ost_gui.dir/tools/moc_tool_options.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/tools/moc_tool_options.cpp
In file included from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38,
from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/entity.hh:41,
from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/scene_win/../../../../../modules/gui/src/scene_win/entity_node.hh:28,
@@ -21236,108 +21367,142 @@
/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/entity.hh:294:8: note: by 'ost::gfx::Entity::Apply'
294 | void Apply(const gfx::MapHandleColorOp& op, bool store=true);
| ^~~~~
-[ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_bar.cpp.o
+[ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool.cpp.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool.cpp.o -MF CMakeFiles/ost_gui.dir/tools/moc_tool.cpp.o.d -o CMakeFiles/ost_gui.dir/tools/moc_tool.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/tools/moc_tool.cpp
+[ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_option_group.cpp.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_option_group.cpp.o -MF CMakeFiles/ost_gui.dir/tools/moc_tool_option_group.cpp.o.d -o CMakeFiles/ost_gui.dir/tools/moc_tool_option_group.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/tools/moc_tool_option_group.cpp
+[ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_options.cpp.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_options.cpp.o -MF CMakeFiles/ost_gui.dir/tools/moc_tool_options.cpp.o.d -o CMakeFiles/ost_gui.dir/tools/moc_tool_options.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/tools/moc_tool_options.cpp
+[ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_bar.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_bar.cpp.o -MF CMakeFiles/ost_gui.dir/tools/moc_tool_bar.cpp.o.d -o CMakeFiles/ost_gui.dir/tools/moc_tool_bar.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/tools/moc_tool_bar.cpp
-[ 73%] Linking CXX executable ../../stage/bin/molck
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/tools/molck && /usr/bin/cmake -E cmake_link_script CMakeFiles/molck.dir/link.txt --verbose=1
-[ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_option.cpp.o
+[ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_manager.cpp.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_manager.cpp.o -MF CMakeFiles/ost_gui.dir/tools/moc_tool_manager.cpp.o.d -o CMakeFiles/ost_gui.dir/tools/moc_tool_manager.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/tools/moc_tool_manager.cpp
+[ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_option.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_option.cpp.o -MF CMakeFiles/ost_gui.dir/tools/moc_tool_option.cpp.o.d -o CMakeFiles/ost_gui.dir/tools/moc_tool_option.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/tools/moc_tool_option.cpp
-[ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_options_widget.cpp.o
+[ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_options_widget.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_options_widget.cpp.o -MF CMakeFiles/ost_gui.dir/tools/moc_tool_options_widget.cpp.o.d -o CMakeFiles/ost_gui.dir/tools/moc_tool_options_widget.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/tools/moc_tool_options_widget.cpp
-[ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_manager.cpp.o
-[ 74%] Linking CXX executable ../../../../stage/bin/lddt
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_manager.cpp.o -MF CMakeFiles/ost_gui.dir/tools/moc_tool_manager.cpp.o.d -o CMakeFiles/ost_gui.dir/tools/moc_tool_manager.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/tools/moc_tool_manager.cpp
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lddt.dir/link.txt --verbose=1
-[ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_measure_tool.cpp.o
+[ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_measure_tool.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_measure_tool.cpp.o -MF CMakeFiles/ost_gui.dir/tools/moc_measure_tool.cpp.o.d -o CMakeFiles/ost_gui.dir/tools/moc_measure_tool.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/tools/moc_measure_tool.cpp
-[ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_options_win.cpp.o
+[ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_options_win.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_options_win.cpp.o -MF CMakeFiles/ost_gui.dir/tools/moc_tool_options_win.cpp.o.d -o CMakeFiles/ost_gui.dir/tools/moc_tool_options_win.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/tools/moc_tool_options_win.cpp
-[ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_argand.cpp.o
+[ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_argand.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_argand.cpp.o -MF CMakeFiles/ost_gui.dir/data_viewer/moc_argand.cpp.o.d -o CMakeFiles/ost_gui.dir/data_viewer/moc_argand.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/data_viewer/moc_argand.cpp
-[ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_fft_panel.cpp.o
+[ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_fft_panel.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_fft_panel.cpp.o -MF CMakeFiles/ost_gui.dir/data_viewer/moc_fft_panel.cpp.o.d -o CMakeFiles/ost_gui.dir/data_viewer/moc_fft_panel.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/data_viewer/moc_fft_panel.cpp
-[ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_info_panel.cpp.o
+[ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_info_panel.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_info_panel.cpp.o -MF CMakeFiles/ost_gui.dir/data_viewer/moc_info_panel.cpp.o.d -o CMakeFiles/ost_gui.dir/data_viewer/moc_info_panel.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/data_viewer/moc_info_panel.cpp
-[ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_data_viewer.cpp.o
+[ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_data_viewer.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_data_viewer.cpp.o -MF CMakeFiles/ost_gui.dir/data_viewer/moc_data_viewer.cpp.o.d -o CMakeFiles/ost_gui.dir/data_viewer/moc_data_viewer.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/data_viewer/moc_data_viewer.cpp
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/molck.dir/link.d CMakeFiles/molck.dir/main.cc.o -o ../../stage/bin/molck -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib: ../../stage/lib/libost_io.so.2.9.2 ../../stage/lib/libost_mol_alg.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_thread.so.1.83.0 ../../stage/lib/libost_seq_alg.so.2.9.2 ../../stage/lib/libost_conop.so.2.9.2 ../../stage/lib/libost_db.so.2.9.2 /usr/lib/i386-linux-gnu/libsqlite3.so ../../stage/lib/libost_seq.so.2.9.2 ../../stage/lib/libost_mol.so.2.9.2 ../../stage/lib/libost_img_alg.so.2.9.2 ../../stage/lib/libost_img.so.2.9.2 ../../stage/lib/libost_info.so.2.9.2 ../../stage/lib/libost_base.so.2.9.2 ../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libfftw3f_threads.so /usr/lib/i386-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/i386-linux-gnu/libtiff.so /usr/lib/i386-linux-gnu/libpng.so /usr/lib/i386-linux-gnu/libz.so
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 74%] Built target molck
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/lddt.dir/link.d CMakeFiles/lddt.dir/lddt.cc.o -o ../../../../stage/bin/lddt -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib: ../../../../stage/lib/libost_io.so.2.9.2 ../../../../stage/lib/libost_mol_alg.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_thread.so.1.83.0 ../../../../stage/lib/libost_seq_alg.so.2.9.2 ../../../../stage/lib/libost_img_alg.so.2.9.2 ../../../../stage/lib/libost_img.so.2.9.2 /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_conop.so.2.9.2 ../../../../stage/lib/libost_db.so.2.9.2 ../../../../stage/lib/libost_seq.so.2.9.2 ../../../../stage/lib/libost_mol.so.2.9.2 ../../../../stage/lib/libost_info.so.2.9.2 ../../../../stage/lib/libost_base.so.2.9.2 ../../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/i386-linux-gnu/libsqlite3.so /usr/lib/i386-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/i386-linux-gnu/libtiff.so /usr/lib/i386-linux-gnu/libpng.so /usr/lib/i386-linux-gnu/libz.so
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_overlay_manager_gui.cpp.o
+[ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_overlay_manager_gui.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_overlay_manager_gui.cpp.o -MF CMakeFiles/ost_gui.dir/data_viewer/moc_overlay_manager_gui.cpp.o.d -o CMakeFiles/ost_gui.dir/data_viewer/moc_overlay_manager_gui.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/data_viewer/moc_overlay_manager_gui.cpp
-[ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_data_viewer_panel_base.cpp.o
+[ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_data_viewer_panel_base.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_data_viewer_panel_base.cpp.o -MF CMakeFiles/ost_gui.dir/data_viewer/moc_data_viewer_panel_base.cpp.o.d -o CMakeFiles/ost_gui.dir/data_viewer/moc_data_viewer_panel_base.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/data_viewer/moc_data_viewer_panel_base.cpp
-[ 74%] Built target lddt
-[ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_null_overlay.cpp.o
+[ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_null_overlay.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_null_overlay.cpp.o -MF CMakeFiles/ost_gui.dir/data_viewer/moc_null_overlay.cpp.o.d -o CMakeFiles/ost_gui.dir/data_viewer/moc_null_overlay.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/data_viewer/moc_null_overlay.cpp
-[ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_overlay_base.cpp.o
+[ 77%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_overlay_base.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_overlay_base.cpp.o -MF CMakeFiles/ost_gui.dir/data_viewer/moc_overlay_base.cpp.o.d -o CMakeFiles/ost_gui.dir/data_viewer/moc_overlay_base.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/data_viewer/moc_overlay_base.cpp
-[ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_pointlist_overlay_base.cpp.o
+[ 77%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_pointlist_overlay_base.cpp.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_pointlist_overlay_base.cpp.o -MF CMakeFiles/ost_gui.dir/data_viewer/moc_pointlist_overlay_base.cpp.o.d -o CMakeFiles/ost_gui.dir/data_viewer/moc_pointlist_overlay_base.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/data_viewer/moc_pointlist_overlay_base.cpp
-[ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/thin_splitter.cc.o
+[ 77%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/thin_splitter.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/thin_splitter.cc.o -MF CMakeFiles/ost_gui.dir/thin_splitter.cc.o.d -o CMakeFiles/ost_gui.dir/thin_splitter.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/thin_splitter.cc
-[ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/perspective.cc.o
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cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/perspective.cc.o -MF CMakeFiles/ost_gui.dir/perspective.cc.o.d -o CMakeFiles/ost_gui.dir/perspective.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/perspective.cc
-[ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/widget_registry.cc.o
+[ 77%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/widget_registry.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/widget_registry.cc.o -MF CMakeFiles/ost_gui.dir/widget_registry.cc.o.d -o CMakeFiles/ost_gui.dir/widget_registry.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/widget_registry.cc
-[ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/file_browser.cc.o
+[ 77%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/file_browser.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/file_browser.cc.o -MF CMakeFiles/ost_gui.dir/file_browser.cc.o.d -o CMakeFiles/ost_gui.dir/file_browser.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/file_browser.cc
-[ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/file_type_dialog.cc.o
+[ 77%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/file_type_dialog.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/file_type_dialog.cc.o -MF CMakeFiles/ost_gui.dir/file_type_dialog.cc.o.d -o CMakeFiles/ost_gui.dir/file_type_dialog.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/file_type_dialog.cc
-[ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/file_viewer.cc.o
+[ 77%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/file_viewer.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/file_viewer.cc.o -MF CMakeFiles/ost_gui.dir/file_viewer.cc.o.d -o CMakeFiles/ost_gui.dir/file_viewer.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/file_viewer.cc
-[ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/main.cc.o
+[ 77%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/main.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/main.cc.o -MF CMakeFiles/ost_gui.dir/main.cc.o.d -o CMakeFiles/ost_gui.dir/main.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/main.cc
-[ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/gl_canvas.cc.o
+[ 77%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/gl_canvas.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/gl_canvas.cc.o -MF CMakeFiles/ost_gui.dir/gl_canvas.cc.o.d -o CMakeFiles/ost_gui.dir/gl_canvas.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/gl_canvas.cc
-[ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/dock_widget.cc.o
+[ 77%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/dock_widget.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/dock_widget.cc.o -MF CMakeFiles/ost_gui.dir/dock_widget.cc.o.d -o CMakeFiles/ost_gui.dir/dock_widget.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/dock_widget.cc
-[ 77%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/main_window.cc.o
+[ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/main_window.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/main_window.cc.o -MF CMakeFiles/ost_gui.dir/main_window.cc.o.d -o CMakeFiles/ost_gui.dir/main_window.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/main_window.cc
-[ 77%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/gl_win.cc.o
+[ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/gl_win.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/gl_win.cc.o -MF CMakeFiles/ost_gui.dir/gl_win.cc.o.d -o CMakeFiles/ost_gui.dir/gl_win.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/gl_win.cc
-[ 77%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_menu.cc.o
+[ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_menu.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_menu.cc.o -MF CMakeFiles/ost_gui.dir/scene_menu.cc.o.d -o CMakeFiles/ost_gui.dir/scene_menu.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_menu.cc
-[ 77%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/widget.cc.o
+[ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/widget.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/widget.cc.o -MF CMakeFiles/ost_gui.dir/widget.cc.o.d -o CMakeFiles/ost_gui.dir/widget.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/widget.cc
-[ 77%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/admin.cc.o
+[ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/admin.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/admin.cc.o -MF CMakeFiles/ost_gui.dir/admin.cc.o.d -o CMakeFiles/ost_gui.dir/admin.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/admin.cc
-[ 77%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/widget_pool.cc.o
+[ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/widget_pool.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/widget_pool.cc.o -MF CMakeFiles/ost_gui.dir/widget_pool.cc.o.d -o CMakeFiles/ost_gui.dir/widget_pool.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/widget_pool.cc
-[ 77%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/message_widget.cc.o
+[ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/message_widget.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/messages/message_widget.cc.o -MF CMakeFiles/ost_gui.dir/messages/message_widget.cc.o.d -o CMakeFiles/ost_gui.dir/messages/message_widget.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/messages/message_widget.cc
-[ 77%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/message_box_widget.cc.o
+[ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/message_box_widget.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/messages/message_box_widget.cc.o -MF CMakeFiles/ost_gui.dir/messages/message_box_widget.cc.o.d -o CMakeFiles/ost_gui.dir/messages/message_box_widget.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/messages/message_box_widget.cc
-[ 77%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/log_reader.cc.o
+In file included from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/main.hh:28,
+ from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/gosty_app.hh:28,
+ from /build/reproducible-path/openstructure-2.9.2/modules/gui/src/main.cc:19:
+/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/widget_state_saver.hh: In instantiation of 'ost::gui::WidgetStateSaver<BASE>::~WidgetStateSaver() [with BASE = QMainWindow]':
+/build/reproducible-path/openstructure-2.9.2/modules/gui/src/main.cc:70:69: required from here
+ 70 | GostyMainWindow::GetDefaultSize(), 0)
+ | ^
+/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/widget_state_saver.hh:323:8: warning: the address of 'ost::gui::WidgetStateSaver<QMainWindow>::QMainWindow' will never be NULL [-Waddress]
+ 323 | if(dynamic_cast<QMainWindow* >(this)){
+ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/widget_state_saver.hh:263:7: note: 'ost::gui::WidgetStateSaver<QMainWindow>::QMainWindow' declared here
+ 263 | class WidgetStateSaver<BASE>: public BASE
+ | ^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/widget_state_saver.hh: In instantiation of 'void ost::gui::WidgetStateSaver<BASE>::set_state_() [with BASE = QMainWindow]':
+/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/widget_state_saver.hh:286:5: required from 'ost::gui::WidgetStateSaver<BASE>::WidgetStateSaver(const QString&, QPoint, QSize, QWidget*) [with BASE = QMainWindow]'
+ 286 | set_state_();
+ | ^~~~~~~~~~
+/build/reproducible-path/openstructure-2.9.2/modules/gui/src/main.cc:70:69: required from here
+ 70 | GostyMainWindow::GetDefaultSize(), 0)
+ | ^
+/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/widget_state_saver.hh:305:10: warning: the address of 'ost::gui::WidgetStateSaver<QMainWindow>::QMainWindow' will never be NULL [-Waddress]
+ 305 | if(dynamic_cast<QMainWindow* >(this)){
+ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/widget_state_saver.hh:263:7: note: 'ost::gui::WidgetStateSaver<QMainWindow>::QMainWindow' declared here
+ 263 | class WidgetStateSaver<BASE>: public BASE
+ | ^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/openstructure-2.9.2/modules/gui/src/file_browser.cc: In constructor 'ost::gui::FileBrowser::FileBrowser(QWidget*)':
+/build/reproducible-path/openstructure-2.9.2/modules/gui/src/file_browser.cc:62:13: warning: 'QDirModel::QDirModel(QObject*)' is deprecated: Use QFileSystemModel [-Wdeprecated-declarations]
+ 62 | model_(new QDirModel),
+ | ^~~~~~~~~
+In file included from /usr/include/i386-linux-gnu/qt5/QtWidgets/QDirModel:1,
+ from /build/reproducible-path/openstructure-2.9.2/modules/gui/src/file_browser.cc:53:
+/usr/include/i386-linux-gnu/qt5/QtWidgets/qdirmodel.h:73:67: note: declared here
+ 73 | QT_DEPRECATED_VERSION_X_5_15("Use QFileSystemModel") explicit QDirModel(QObject *parent = nullptr);
+ | ^~~~~~~~~
+/build/reproducible-path/openstructure-2.9.2/modules/gui/src/file_browser.cc: In constructor 'ost::gui::FileBrowser::FileBrowser(const QString&, QWidget*)':
+/build/reproducible-path/openstructure-2.9.2/modules/gui/src/file_browser.cc:102:13: warning: 'QDirModel::QDirModel(QObject*)' is deprecated: Use QFileSystemModel [-Wdeprecated-declarations]
+ 102 | model_(new QDirModel),
+ | ^~~~~~~~~
+/usr/include/i386-linux-gnu/qt5/QtWidgets/qdirmodel.h:73:67: note: declared here
+ 73 | QT_DEPRECATED_VERSION_X_5_15("Use QFileSystemModel") explicit QDirModel(QObject *parent = nullptr);
+ | ^~~~~~~~~
+[ 79%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/log_reader.cc.o
+[ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/align_properties_painter.cc.o
+[ 79%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/base_row.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/messages/log_reader.cc.o -MF CMakeFiles/ost_gui.dir/messages/log_reader.cc.o.d -o CMakeFiles/ost_gui.dir/messages/log_reader.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/messages/log_reader.cc
-[ 77%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/align_properties_painter.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/align_properties_painter.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/align_properties_painter.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/align_properties_painter.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/align_properties_painter.cc
-[ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/base_row.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/base_row.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/base_row.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/base_row.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/base_row.cc
-[ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/background_painter.cc.o
+[ 79%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/background_painter.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/background_painter.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/background_painter.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/background_painter.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/background_painter.cc
-[ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/conservation_painter.cc.o
+[ 79%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/conservation_painter.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/conservation_painter.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/conservation_painter.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/conservation_painter.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/conservation_painter.cc
-[ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/secstr_row.cc.o
+[ 79%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/secstr_row.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/secstr_row.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/secstr_row.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/secstr_row.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/secstr_row.cc
-[ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/seq_secstr_painter.cc.o
+[ 79%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/seq_secstr_painter.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/seq_secstr_painter.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/seq_secstr_painter.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/seq_secstr_painter.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/seq_secstr_painter.cc
-[ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/seq_selection_painter.cc.o
+[ 79%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/seq_selection_painter.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/seq_selection_painter.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/seq_selection_painter.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/seq_selection_painter.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/seq_selection_painter.cc
-[ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/seq_text_painter.cc.o
+[ 79%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/seq_text_painter.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/seq_text_painter.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/seq_text_painter.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/seq_text_painter.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/seq_text_painter.cc
-[ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_delegate.cc.o
+[ 79%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_delegate.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_delegate.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/sequence_delegate.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_delegate.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/sequence_delegate.cc
-[ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_model.cc.o
+[ 79%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_model.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_model.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/sequence_model.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_model.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/sequence_model.cc
-[ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_row.cc.o
+[ 79%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_row.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_row.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/sequence_row.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_row.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/sequence_row.cc
-[ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_search_bar.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_search_bar.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/sequence_search_bar.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_search_bar.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/sequence_search_bar.cc
-[ 79%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_table_view.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_table_view.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/sequence_table_view.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_table_view.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/sequence_table_view.cc
In file included from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/gfx_object_base.hh:34,
from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/gfx_object.hh:40,
from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38,
@@ -21349,6 +21514,8 @@
/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/gfx_object.hh:58:16: note: by 'virtual void ost::gfx::GfxObj::DeepSwap(ost::gfx::GfxObj&)'
58 | virtual void DeepSwap(GfxObj& go);
| ^~~~~~~~
+[ 79%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_search_bar.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_search_bar.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/sequence_search_bar.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_search_bar.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/sequence_search_bar.cc
In file included from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/gfx_object_base.hh:34,
from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/gfx_object.hh:40,
from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38,
@@ -21360,91 +21527,53 @@
/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/gfx_object.hh:58:16: note: by 'virtual void ost::gfx::GfxObj::DeepSwap(ost::gfx::GfxObj&)'
58 | virtual void DeepSwap(GfxObj& go);
| ^~~~~~~~
-/build/reproducible-path/openstructure-2.9.2/modules/gui/src/file_browser.cc: In constructor 'ost::gui::FileBrowser::FileBrowser(QWidget*)':
-/build/reproducible-path/openstructure-2.9.2/modules/gui/src/file_browser.cc:62:13: warning: 'QDirModel::QDirModel(QObject*)' is deprecated: Use QFileSystemModel [-Wdeprecated-declarations]
- 62 | model_(new QDirModel),
- | ^~~~~~~~~
-In file included from /usr/include/i386-linux-gnu/qt5/QtWidgets/QDirModel:1,
- from /build/reproducible-path/openstructure-2.9.2/modules/gui/src/file_browser.cc:53:
-/usr/include/i386-linux-gnu/qt5/QtWidgets/qdirmodel.h:73:67: note: declared here
- 73 | QT_DEPRECATED_VERSION_X_5_15("Use QFileSystemModel") explicit QDirModel(QObject *parent = nullptr);
- | ^~~~~~~~~
-/build/reproducible-path/openstructure-2.9.2/modules/gui/src/file_browser.cc: In constructor 'ost::gui::FileBrowser::FileBrowser(const QString&, QWidget*)':
-/build/reproducible-path/openstructure-2.9.2/modules/gui/src/file_browser.cc:102:13: warning: 'QDirModel::QDirModel(QObject*)' is deprecated: Use QFileSystemModel [-Wdeprecated-declarations]
- 102 | model_(new QDirModel),
- | ^~~~~~~~~
-/usr/include/i386-linux-gnu/qt5/QtWidgets/qdirmodel.h:73:67: note: declared here
- 73 | QT_DEPRECATED_VERSION_X_5_15("Use QFileSystemModel") explicit QDirModel(QObject *parent = nullptr);
- | ^~~~~~~~~
-In file included from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/main.hh:28,
- from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/gosty_app.hh:28,
- from /build/reproducible-path/openstructure-2.9.2/modules/gui/src/main.cc:19:
-/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/widget_state_saver.hh: In instantiation of 'ost::gui::WidgetStateSaver<BASE>::~WidgetStateSaver() [with BASE = QMainWindow]':
-/build/reproducible-path/openstructure-2.9.2/modules/gui/src/main.cc:70:69: required from here
- 70 | GostyMainWindow::GetDefaultSize(), 0)
- | ^
-/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/widget_state_saver.hh:323:8: warning: the address of 'ost::gui::WidgetStateSaver<QMainWindow>::QMainWindow' will never be NULL [-Waddress]
- 323 | if(dynamic_cast<QMainWindow* >(this)){
- | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/widget_state_saver.hh:263:7: note: 'ost::gui::WidgetStateSaver<QMainWindow>::QMainWindow' declared here
- 263 | class WidgetStateSaver<BASE>: public BASE
- | ^~~~~~~~~~~~~~~~~~~~~~
-[ 79%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_viewer.cc.o
+[ 81%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_table_view.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_table_view.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/sequence_table_view.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_table_view.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/sequence_table_view.cc
+[ 81%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_viewer.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_viewer.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/sequence_viewer.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_viewer.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/sequence_viewer.cc
-/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/widget_state_saver.hh: In instantiation of 'void ost::gui::WidgetStateSaver<BASE>::set_state_() [with BASE = QMainWindow]':
-/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/widget_state_saver.hh:286:5: required from 'ost::gui::WidgetStateSaver<BASE>::WidgetStateSaver(const QString&, QPoint, QSize, QWidget*) [with BASE = QMainWindow]'
- 286 | set_state_();
- | ^~~~~~~~~~
-/build/reproducible-path/openstructure-2.9.2/modules/gui/src/main.cc:70:69: required from here
- 70 | GostyMainWindow::GetDefaultSize(), 0)
- | ^
-/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/widget_state_saver.hh:305:10: warning: the address of 'ost::gui::WidgetStateSaver<QMainWindow>::QMainWindow' will never be NULL [-Waddress]
- 305 | if(dynamic_cast<QMainWindow* >(this)){
- | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/widget_state_saver.hh:263:7: note: 'ost::gui::WidgetStateSaver<QMainWindow>::QMainWindow' declared here
- 263 | class WidgetStateSaver<BASE>: public BASE
- | ^~~~~~~~~~~~~~~~~~~~~~
-[ 79%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/title_row.cc.o
-[ 79%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/tick_painter.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/title_row.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/title_row.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/title_row.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/title_row.cc
+[ 81%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/tick_painter.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/tick_painter.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/tick_painter.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/tick_painter.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/tick_painter.cc
-[ 79%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/alignment_view_object.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/alignment_view_object.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/alignment_view_object.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/alignment_view_object.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/alignment_view_object.cc
-[ 79%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/base_view_object.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/base_view_object.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/base_view_object.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/base_view_object.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/base_view_object.cc
-[ 79%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_view_object.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_view_object.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/sequence_view_object.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_view_object.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/sequence_view_object.cc
-[ 79%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/gosty_app.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/gosty_app.cc.o -MF CMakeFiles/ost_gui.dir/gosty_app.cc.o.d -o CMakeFiles/ost_gui.dir/gosty_app.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/gosty_app.cc
+[ 81%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/title_row.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/title_row.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/title_row.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/title_row.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/title_row.cc
In file included from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/gfx_object_base.hh:34,
from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/gfx_object.hh:40,
from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38,
from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/entity.hh:41,
- from /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/sequence_view_object.hh:30,
- from /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/alignment_view_object.hh:32,
- from /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/alignment_view_object.cc:41:
+ from /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/sequence_model.hh:33,
+ from /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/sequence_model.cc:30:
/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/gfx_node.hh:55:16: warning: 'virtual void ost::gfx::GfxNode::DeepSwap(ost::gfx::GfxNode&)' was hidden [-Woverloaded-virtual=]
55 | virtual void DeepSwap(GfxNode& n);
| ^~~~~~~~
/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/gfx_object.hh:58:16: note: by 'virtual void ost::gfx::GfxObj::DeepSwap(ost::gfx::GfxObj&)'
58 | virtual void DeepSwap(GfxObj& go);
| ^~~~~~~~
+[ 81%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/alignment_view_object.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/alignment_view_object.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/alignment_view_object.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/alignment_view_object.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/alignment_view_object.cc
+[ 81%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/base_view_object.cc.o
+[ 81%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_view_object.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/base_view_object.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/base_view_object.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/base_view_object.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/base_view_object.cc
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_view_object.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/sequence_view_object.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_view_object.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/sequence_view_object.cc
+[ 81%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/gosty_app.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/gosty_app.cc.o -MF CMakeFiles/ost_gui.dir/gosty_app.cc.o.d -o CMakeFiles/ost_gui.dir/gosty_app.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/gosty_app.cc
In file included from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/gfx_object_base.hh:34,
from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/gfx_object.hh:40,
from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38,
from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/entity.hh:41,
- from /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/sequence_model.hh:33,
- from /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/sequence_model.cc:30:
+ from /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/sequence_view_object.hh:30,
+ from /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/alignment_view_object.hh:32,
+ from /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/alignment_view_object.cc:41:
/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/gfx_node.hh:55:16: warning: 'virtual void ost::gfx::GfxNode::DeepSwap(ost::gfx::GfxNode&)' was hidden [-Woverloaded-virtual=]
55 | virtual void DeepSwap(GfxNode& n);
| ^~~~~~~~
/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/gfx_object.hh:58:16: note: by 'virtual void ost::gfx::GfxObj::DeepSwap(ost::gfx::GfxObj&)'
58 | virtual void DeepSwap(GfxObj& go);
| ^~~~~~~~
-[ 79%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/main_area.cc.o
+[ 81%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/main_area.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/main_area.cc.o -MF CMakeFiles/ost_gui.dir/main_area.cc.o.d -o CMakeFiles/ost_gui.dir/main_area.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/main_area.cc
-[ 79%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/widget_state_saver.cc.o
+[ 81%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/widget_state_saver.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/widget_state_saver.cc.o -MF CMakeFiles/ost_gui.dir/widget_state_saver.cc.o.d -o CMakeFiles/ost_gui.dir/widget_state_saver.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/widget_state_saver.cc
+[ 81%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_selection.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_selection.cc.o -MF CMakeFiles/ost_gui.dir/scene_selection.cc.o.d -o CMakeFiles/ost_gui.dir/scene_selection.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_selection.cc
In file included from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/gfx_object_base.hh:34,
from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/gfx_object.hh:40,
from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38,
@@ -21457,28 +21586,22 @@
/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/gfx_object.hh:58:16: note: by 'virtual void ost::gfx::GfxObj::DeepSwap(ost::gfx::GfxObj&)'
58 | virtual void DeepSwap(GfxObj& go);
| ^~~~~~~~
-[ 81%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/widget_geom_handler.cc.o
-[ 81%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_selection.cc.o
+[ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/widget_geom_handler.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/widget_geom_handler.cc.o -MF CMakeFiles/ost_gui.dir/widget_geom_handler.cc.o.d -o CMakeFiles/ost_gui.dir/widget_geom_handler.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/widget_geom_handler.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_selection.cc.o -MF CMakeFiles/ost_gui.dir/scene_selection.cc.o.d -o CMakeFiles/ost_gui.dir/scene_selection.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_selection.cc
-[ 81%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/file_loader.cc.o
+[ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/file_loader.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/file_loader.cc.o -MF CMakeFiles/ost_gui.dir/file_loader.cc.o.d -o CMakeFiles/ost_gui.dir/file_loader.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/file_loader.cc
-[ 81%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/button_bar.cc.o
+[ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/button_bar.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/button_bar.cc.o -MF CMakeFiles/ost_gui.dir/panels/button_bar.cc.o.d -o CMakeFiles/ost_gui.dir/panels/button_bar.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/button_bar.cc
-[ 81%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/drop_box.cc.o
+[ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/drop_box.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/drop_box.cc.o -MF CMakeFiles/ost_gui.dir/panels/drop_box.cc.o.d -o CMakeFiles/ost_gui.dir/panels/drop_box.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/drop_box.cc
-[ 81%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_bar.cc.o
+[ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_bar.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_bar.cc.o -MF CMakeFiles/ost_gui.dir/panels/panel_bar.cc.o.d -o CMakeFiles/ost_gui.dir/panels/panel_bar.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/panel_bar.cc
-[ 81%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/bottom_bar.cc.o
+[ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/bottom_bar.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/bottom_bar.cc.o -MF CMakeFiles/ost_gui.dir/panels/bottom_bar.cc.o.d -o CMakeFiles/ost_gui.dir/panels/bottom_bar.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/bottom_bar.cc
-[ 81%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/button_box.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/button_box.cc.o -MF CMakeFiles/ost_gui.dir/panels/button_box.cc.o.d -o CMakeFiles/ost_gui.dir/panels/button_box.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/button_box.cc
-[ 81%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/event_button.cc.o
-[ 81%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_manager.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_manager.cc.o -MF CMakeFiles/ost_gui.dir/panels/panel_manager.cc.o.d -o CMakeFiles/ost_gui.dir/panels/panel_manager.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/panel_manager.cc
+[ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/event_button.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/event_button.cc.o -MF CMakeFiles/ost_gui.dir/panels/event_button.cc.o.d -o CMakeFiles/ost_gui.dir/panels/event_button.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/event_button.cc
-[ 81%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_widget_container.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_widget_container.cc.o -MF CMakeFiles/ost_gui.dir/panels/panel_widget_container.cc.o.d -o CMakeFiles/ost_gui.dir/panels/panel_widget_container.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/panel_widget_container.cc
+[ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/button_box.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/button_box.cc.o -MF CMakeFiles/ost_gui.dir/panels/button_box.cc.o.d -o CMakeFiles/ost_gui.dir/panels/button_box.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/button_box.cc
In file included from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_viewer.hh:31,
from /build/reproducible-path/openstructure-2.9.2/modules/gui/src/gosty_app.cc:29:
/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/gfx_object.hh:62:16: warning: 'virtual void ost::gfx::GfxObj::Apply(ost::gfx::GfxNodeVisitor&, ost::gfx::GfxNodeVisitor::Stack)' was hidden [-Woverloaded-virtual=]
@@ -21488,10 +21611,6 @@
/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/entity.hh:294:8: note: by 'ost::gfx::Entity::Apply'
294 | void Apply(const gfx::MapHandleColorOp& op, bool store=true);
| ^~~~~
-[ 81%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_bar_widget_holder.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_bar_widget_holder.cc.o -MF CMakeFiles/ost_gui.dir/panels/panel_bar_widget_holder.cc.o.d -o CMakeFiles/ost_gui.dir/panels/panel_bar_widget_holder.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/panel_bar_widget_holder.cc
-[ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/side_bar.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/side_bar.cc.o -MF CMakeFiles/ost_gui.dir/panels/side_bar.cc.o.d -o CMakeFiles/ost_gui.dir/panels/side_bar.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/side_bar.cc
In file included from /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_selection.cc:28:
/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/gfx_object.hh:62:16: warning: 'virtual void ost::gfx::GfxObj::Apply(ost::gfx::GfxNodeVisitor&, ost::gfx::GfxNodeVisitor::Stack)' was hidden [-Woverloaded-virtual=]
62 | virtual void Apply(GfxNodeVisitor& v, GfxNodeVisitor::Stack st);
@@ -21500,47 +21619,55 @@
/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/entity.hh:294:8: note: by 'ost::gfx::Entity::Apply'
294 | void Apply(const gfx::MapHandleColorOp& op, bool store=true);
| ^~~~~
-[ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/splitter_panel_bar.cc.o
+[ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_manager.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_manager.cc.o -MF CMakeFiles/ost_gui.dir/panels/panel_manager.cc.o.d -o CMakeFiles/ost_gui.dir/panels/panel_manager.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/panel_manager.cc
+[ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_widget_container.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_widget_container.cc.o -MF CMakeFiles/ost_gui.dir/panels/panel_widget_container.cc.o.d -o CMakeFiles/ost_gui.dir/panels/panel_widget_container.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/panel_widget_container.cc
+[ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_bar_widget_holder.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_bar_widget_holder.cc.o -MF CMakeFiles/ost_gui.dir/panels/panel_bar_widget_holder.cc.o.d -o CMakeFiles/ost_gui.dir/panels/panel_bar_widget_holder.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/panel_bar_widget_holder.cc
+[ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/side_bar.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/side_bar.cc.o -MF CMakeFiles/ost_gui.dir/panels/side_bar.cc.o.d -o CMakeFiles/ost_gui.dir/panels/side_bar.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/side_bar.cc
+[ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/splitter_panel_bar.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/splitter_panel_bar.cc.o -MF CMakeFiles/ost_gui.dir/panels/splitter_panel_bar.cc.o.d -o CMakeFiles/ost_gui.dir/panels/splitter_panel_bar.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/splitter_panel_bar.cc
-[ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/tabbed_panel_bar.cc.o
+[ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/tabbed_panel_bar.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/tabbed_panel_bar.cc.o -MF CMakeFiles/ost_gui.dir/panels/tabbed_panel_bar.cc.o.d -o CMakeFiles/ost_gui.dir/panels/tabbed_panel_bar.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/tabbed_panel_bar.cc
-[ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_option_group.cc.o
+[ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_option_group.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_option_group.cc.o -MF CMakeFiles/ost_gui.dir/tools/tool_option_group.cc.o.d -o CMakeFiles/ost_gui.dir/tools/tool_option_group.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/tool_option_group.cc
-[ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_options.cc.o
+[ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_options.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_options.cc.o -MF CMakeFiles/ost_gui.dir/tools/tool_options.cc.o.d -o CMakeFiles/ost_gui.dir/tools/tool_options.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/tool_options.cc
-[ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_option.cc.o
+[ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_option.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_option.cc.o -MF CMakeFiles/ost_gui.dir/tools/tool_option.cc.o.d -o CMakeFiles/ost_gui.dir/tools/tool_option.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/tool_option.cc
-[ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_manager.cc.o
+[ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_manager.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_manager.cc.o -MF CMakeFiles/ost_gui.dir/tools/tool_manager.cc.o.d -o CMakeFiles/ost_gui.dir/tools/tool_manager.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/tool_manager.cc
-[ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_options_win.cc.o
+[ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_options_win.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_options_win.cc.o -MF CMakeFiles/ost_gui.dir/tools/tool_options_win.cc.o.d -o CMakeFiles/ost_gui.dir/tools/tool_options_win.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/tool_options_win.cc
-[ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool.cc.o
+[ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool.cc.o -MF CMakeFiles/ost_gui.dir/tools/tool.cc.o.d -o CMakeFiles/ost_gui.dir/tools/tool.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/tool.cc
[ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/mouse_event.cc.o
-[ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/manipulator.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/manipulator.cc.o -MF CMakeFiles/ost_gui.dir/tools/manipulator.cc.o.d -o CMakeFiles/ost_gui.dir/tools/manipulator.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/manipulator.cc
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/mouse_event.cc.o -MF CMakeFiles/ost_gui.dir/tools/mouse_event.cc.o.d -o CMakeFiles/ost_gui.dir/tools/mouse_event.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/mouse_event.cc
-[ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_options_widget.cc.o
+[ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/manipulator.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/manipulator.cc.o -MF CMakeFiles/ost_gui.dir/tools/manipulator.cc.o.d -o CMakeFiles/ost_gui.dir/tools/manipulator.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/manipulator.cc
+[ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_options_widget.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_options_widget.cc.o -MF CMakeFiles/ost_gui.dir/tools/tool_options_widget.cc.o.d -o CMakeFiles/ost_gui.dir/tools/tool_options_widget.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/tool_options_widget.cc
-[ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_bar.cc.o
+[ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_bar.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_bar.cc.o -MF CMakeFiles/ost_gui.dir/tools/tool_bar.cc.o.d -o CMakeFiles/ost_gui.dir/tools/tool_bar.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/tool_bar.cc
-[ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/selection_tool.cc.o
+[ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/selection_tool.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/selection_tool.cc.o -MF CMakeFiles/ost_gui.dir/tools/selection_tool.cc.o.d -o CMakeFiles/ost_gui.dir/tools/selection_tool.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/selection_tool.cc
-[ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/measure_tool.cc.o
+[ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/measure_tool.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/measure_tool.cc.o -MF CMakeFiles/ost_gui.dir/tools/measure_tool.cc.o.d -o CMakeFiles/ost_gui.dir/tools/measure_tool.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/measure_tool.cc
-[ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/gutter.cc.o
+[ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/gutter.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/gutter.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/gutter.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/gutter.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/gutter.cc
-[ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/main_thread_runner.cc.o
+[ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/main_thread_runner.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/main_thread_runner.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/main_thread_runner.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/main_thread_runner.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/main_thread_runner.cc
-[ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/output_redirector.cc.o
+[ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/output_redirector.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/output_redirector.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/output_redirector.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/output_redirector.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/output_redirector.cc
-[ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/completer_base.cc.o
+[ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/completer_base.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/completer_base.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/completer_base.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/completer_base.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/completer_base.cc
-[ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/dir_model.cc.o
-[ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/path_completer.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/path_completer.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/path_completer.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/path_completer.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/path_completer.cc
+[ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/dir_model.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/dir_model.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/dir_model.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/dir_model.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/dir_model.cc
-[ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_context_parser.cc.o
+[ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/path_completer.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/path_completer.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/path_completer.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/path_completer.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/path_completer.cc
+[ 86%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_context_parser.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_context_parser.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_context_parser.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_context_parser.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/python_context_parser.cc
/build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/dir_model.cc: In constructor 'ost::gui::OstDirModel::OstDirModel(QObject*)':
/build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/dir_model.cc:31:18: warning: 'QDirModel::QDirModel(QObject*)' is deprecated: Use QFileSystemModel [-Wdeprecated-declarations]
@@ -21552,301 +21679,198 @@
/usr/include/i386-linux-gnu/qt5/QtWidgets/qdirmodel.h:73:67: note: declared here
73 | QT_DEPRECATED_VERSION_X_5_15("Use QFileSystemModel") explicit QDirModel(QObject *parent = nullptr);
| ^~~~~~~~~
-[ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_interpreter.cc.o
-[ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_completer.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_interpreter.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_interpreter.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_interpreter.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/python_interpreter.cc
-[ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_interpreter_worker.cc.o
+[ 86%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_completer.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_completer.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_completer.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_completer.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/python_completer.cc
+[ 86%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_interpreter.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_interpreter.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_interpreter.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_interpreter.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/python_interpreter.cc
+[ 86%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_interpreter_worker.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_interpreter_worker.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_interpreter_worker.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_interpreter_worker.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/python_interpreter_worker.cc
-[ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_model.cc.o
+[ 86%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_model.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_model.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_model.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_model.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/python_namespace_tree_model.cc
-[ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_item.cc.o
+[ 86%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_item.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_item.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_item.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_item.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/python_namespace_tree_item.cc
-[ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_shell.cc.o
+[ 86%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_shell.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_shell.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_shell.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_shell.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/python_shell.cc
-[ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_tokenizer.cc.o
-[ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_syntax_highlighter.cc.o
-[ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_shell_text_document_layout.cc.o
-[ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_shell_widget.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_syntax_highlighter.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_syntax_highlighter.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_syntax_highlighter.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/python_syntax_highlighter.cc
+[ 86%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_shell_widget.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_shell_widget.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_shell_widget.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_shell_widget.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/python_shell_widget.cc
+[ 86%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_shell_text_document_layout.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_shell_text_document_layout.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_shell_text_document_layout.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_shell_text_document_layout.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/python_shell_text_document_layout.cc
+[ 86%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_tokenizer.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_tokenizer.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_tokenizer.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_tokenizer.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/python_tokenizer.cc
-[ 86%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/shell_history.cc.o
+[ 86%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_syntax_highlighter.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_syntax_highlighter.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_syntax_highlighter.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_syntax_highlighter.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/python_syntax_highlighter.cc
+[ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/shell_history.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/shell_history.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/shell_history.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/shell_history.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/shell_history.cc
-[ 86%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/text_logger.cc.o
-[ 86%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/string_literal_positions.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/text_logger.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/text_logger.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/text_logger.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/text_logger.cc
+[ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/string_literal_positions.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/string_literal_positions.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/string_literal_positions.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/string_literal_positions.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/string_literal_positions.cc
-[ 86%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/state_machine.cc.o
+[ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/text_logger.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/text_logger.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/text_logger.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/text_logger.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/text_logger.cc
+[ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/state_machine.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/state_machine.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/state_machine.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/state_machine.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/state_machine.cc
-[ 86%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/state.cc.o
+[ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/state.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/state.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/state.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/state.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/state.cc
-[ 86%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/transition.cc.o
+[ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/transition.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/transition.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/transition.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/transition.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/transition.cc
-[ 86%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/transition_guard.cc.o
+[ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/transition_guard.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/transition_guard.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/transition_guard.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/transition_guard.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/transition_guard.cc
-[ 86%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/context_menu.cc.o
+[ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/context_menu.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/context_menu.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/context_menu.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/context_menu.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/context_menu.cc
-[ 86%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/current_selection_node.cc.o
+[ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/current_selection_node.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/current_selection_node.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/current_selection_node.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/current_selection_node.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/current_selection_node.cc
-[ 86%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/custom_part_node.cc.o
+[ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/custom_part_node.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/custom_part_node.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/custom_part_node.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/custom_part_node.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/custom_part_node.cc
-[ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/scene_node.cc.o
+[ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/scene_node.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/scene_node.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/scene_node.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/scene_node.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/scene_node.cc
-[ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/label_node.cc.o
+[ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/label_node.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/label_node.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/label_node.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/label_node.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/label_node.cc
-[ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/entity_node.cc.o
+In file included from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/map_iso.hh:33,
+ from /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/context_menu.cc:31:
+/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/gfx_object.hh:62:16: warning: 'virtual void ost::gfx::GfxObj::Apply(ost::gfx::GfxNodeVisitor&, ost::gfx::GfxNodeVisitor::Stack)' was hidden [-Woverloaded-virtual=]
+ 62 | virtual void Apply(GfxNodeVisitor& v, GfxNodeVisitor::Stack st);
+ | ^~~~~
+In file included from /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/entity_node.hh:28,
+ from /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/context_menu.cc:34:
+/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/entity.hh:294:8: note: by 'ost::gfx::Entity::Apply'
+ 294 | void Apply(const gfx::MapHandleColorOp& op, bool store=true);
+ | ^~~~~
+[ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/entity_part_node.cc.o
+[ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/entity_node.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/entity_node.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/entity_node.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/entity_node.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/entity_node.cc
-[ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/entity_part_node.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/entity_part_node.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/entity_part_node.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/entity_part_node.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/entity_part_node.cc
-[ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/gfx_scene_node.cc.o
+[ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/gfx_scene_node.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/gfx_scene_node.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/gfx_scene_node.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/gfx_scene_node.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/gfx_scene_node.cc
-[ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/render_mode_node.cc.o
+[ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/render_mode_node.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/render_mode_node.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/render_mode_node.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/render_mode_node.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/render_mode_node.cc
-[ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/render_modes_node.cc.o
+[ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/render_modes_node.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/render_modes_node.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/render_modes_node.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/render_modes_node.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/render_modes_node.cc
-[ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/root_node.cc.o
+[ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/root_node.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/root_node.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/root_node.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/root_node.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/root_node.cc
-[ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/scene_win.cc.o
+[ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/scene_win.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/scene_win.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/scene_win.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/scene_win.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/scene_win.cc
-[ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/scene_win_model.cc.o
+[ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/scene_win_model.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/scene_win_model.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/scene_win_model.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/scene_win_model.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/scene_win_model.cc
-[ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/map_tool.cc.o
+[ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/map_tool.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/map_tool.cc.o -MF CMakeFiles/ost_gui.dir/tools/map_tool.cc.o.d -o CMakeFiles/ost_gui.dir/tools/map_tool.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/map_tool.cc
-[ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/argand.cc.o
+[ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/argand.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/argand.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/argand.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/argand.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/argand.cc
-[ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/data_viewer.cc.o
+[ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/data_viewer.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/data_viewer.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/data_viewer.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/data_viewer.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/data_viewer.cc
-[ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel.cc.o
+[ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/data_viewer_panel.cc
-[ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel_base.cc.o
+[ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel_base.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel_base.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel_base.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel_base.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/data_viewer_panel_base.cc
-[ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/draw_overlay.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/draw_overlay.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/draw_overlay.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/draw_overlay.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/draw_overlay.cc
-In file included from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/map_iso.hh:33,
- from /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/context_menu.cc:31:
+In file included from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38,
+ from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/entity.hh:41,
+ from /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/render_modes_node.cc:25:
/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/gfx_object.hh:62:16: warning: 'virtual void ost::gfx::GfxObj::Apply(ost::gfx::GfxNodeVisitor&, ost::gfx::GfxNodeVisitor::Stack)' was hidden [-Woverloaded-virtual=]
62 | virtual void Apply(GfxNodeVisitor& v, GfxNodeVisitor::Stack st);
| ^~~~~
-In file included from /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/entity_node.hh:28,
- from /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/context_menu.cc:34:
/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/entity.hh:294:8: note: by 'ost::gfx::Entity::Apply'
294 | void Apply(const gfx::MapHandleColorOp& op, bool store=true);
| ^~~~~
-[ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/drawing_functions.cc.o
+[ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/draw_overlay.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/draw_overlay.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/draw_overlay.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/draw_overlay.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/draw_overlay.cc
+[ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/drawing_functions.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/drawing_functions.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/drawing_functions.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/drawing_functions.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/drawing_functions.cc
-[ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/fft_panel.cc.o
+/build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/scene_win.cc: In member function 'void ost::gui::SceneWin::RowsInserted(const QModelIndex&, int, int)':
+/build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/scene_win.cc:117:31: warning: 'QModelIndex QModelIndex::child(int, int) const' is deprecated: Use QAbstractItemModel::index [-Wdeprecated-declarations]
+ 117 | model->select(parent.child(start,0),QItemSelectionModel::ClearAndSelect|QItemSelectionModel::Rows);
+ | ~~~~~~~~~~~~^~~~~~~~~
+In file included from /usr/include/i386-linux-gnu/qt5/QtCore/QModelIndex:1,
+ from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/scene_win/scene_node.hh:26,
+ from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/scene_win/scene_win_model.hh:34,
+ from /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/scene_win.cc:26:
+/usr/include/i386-linux-gnu/qt5/QtCore/qabstractitemmodel.h:455:20: note: declared here
+ 455 | inline QModelIndex QModelIndex::child(int arow, int acolumn) const
+ | ^~~~~~~~~~~
+[ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/fft_panel.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/fft_panel.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/fft_panel.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/fft_panel.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/fft_panel.cc
-[ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/info_panel.cc.o
+[ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/info_panel.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/info_panel.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/info_panel.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/info_panel.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/info_panel.cc
-[ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/img2qt.cc.o
+[ 89%] Linking CXX shared module ../../../../stage/lib/python3.13/dist-packages/ost/seq/alg/_ost_seq_alg.so
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_seq_alg.dir/link.txt --verbose=1
+[ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/img2qt.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/img2qt.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/img2qt.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/img2qt.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/img2qt.cc
-[ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/mask_overlay.cc.o
+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_ost_seq_alg.dir/link.d -Wl,-z,relro -shared -o ../../../../stage/lib/python3.13/dist-packages/ost/seq/alg/_ost_seq_alg.so CMakeFiles/_ost_seq_alg.dir/wrap_seq_alg.cc.o -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib: ../../../../stage/lib/libost_seq_alg.so.2.9.2 /usr/lib/i386-linux-gnu/libpython3.13.so /usr/lib/i386-linux-gnu/libboost_python313.so.1.83.0 ../../../../stage/lib/libost_seq.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_iostreams.so.1.83.0 ../../../../stage/lib/libost_mol.so.2.9.2 ../../../../stage/lib/libost_info.so.2.9.2 ../../../../stage/lib/libost_base.so.2.9.2 ../../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/seq/alg/pymod/__init__.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/seq/alg/./__init__.pyc\",\"__init__.py\",doraise=True)"
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/seq/alg/pymod/mat.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/seq/alg/./mat.pyc\",\"mat.py\",doraise=True)"
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/seq/alg/pymod/renumber.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/seq/alg/./renumber.pyc\",\"renumber.py\",doraise=True)"
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/seq/alg/pymod/aaindex.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/seq/alg/./aaindex.pyc\",\"aaindex.py\",doraise=True)"
+make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 89%] Built target _ost_seq_alg
+[ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/mask_overlay.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/mask_overlay.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/mask_overlay.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/mask_overlay.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/mask_overlay.cc
-[ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/null_overlay.cc.o
+[ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/null_overlay.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/null_overlay.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/null_overlay.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/null_overlay.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/null_overlay.cc
-[ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/overlay_base.cc.o
+[ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/overlay_base.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/overlay_base.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/overlay_base.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/overlay_base.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/overlay_base.cc
-[ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/overlay_manager.cc.o
+[ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/overlay_manager.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/overlay_manager.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/overlay_manager.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/overlay_manager.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/overlay_manager.cc
-[ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/overlay_manager_gui.cc.o
+[ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/overlay_manager_gui.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/overlay_manager_gui.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/overlay_manager_gui.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/overlay_manager_gui.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/overlay_manager_gui.cc
-[ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay.cc.o
+[ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/pointlist_overlay.cc
-[ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay_base.cc.o
+[ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay_base.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay_base.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay_base.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay_base.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/pointlist_overlay_base.cc
-[ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/strategies.cc.o
+[ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/strategies.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/strategies.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/strategies.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/strategies.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/strategies.cc
-[ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/viewer_normalizer.cc.o
+[ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/viewer_normalizer.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/viewer_normalizer.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/viewer_normalizer.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/viewer_normalizer.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/viewer_normalizer.cc
-/build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/scene_win.cc: In member function 'void ost::gui::SceneWin::RowsInserted(const QModelIndex&, int, int)':
-/build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/scene_win.cc:117:31: warning: 'QModelIndex QModelIndex::child(int, int) const' is deprecated: Use QAbstractItemModel::index [-Wdeprecated-declarations]
- 117 | model->select(parent.child(start,0),QItemSelectionModel::ClearAndSelect|QItemSelectionModel::Rows);
- | ~~~~~~~~~~~~^~~~~~~~~
-In file included from /usr/include/i386-linux-gnu/qt5/QtCore/QModelIndex:1,
- from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/scene_win/scene_node.hh:26,
- from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/scene_win/scene_win_model.hh:34,
- from /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/scene_win.cc:26:
-/usr/include/i386-linux-gnu/qt5/QtCore/qabstractitemmodel.h:455:20: note: declared here
- 455 | inline QModelIndex QModelIndex::child(int arow, int acolumn) const
- | ^~~~~~~~~~~
-In file included from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38,
- from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/entity.hh:41,
- from /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/render_modes_node.cc:25:
-/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/gfx_object.hh:62:16: warning: 'virtual void ost::gfx::GfxObj::Apply(ost::gfx::GfxNodeVisitor&, ost::gfx::GfxNodeVisitor::Stack)' was hidden [-Woverloaded-virtual=]
- 62 | virtual void Apply(GfxNodeVisitor& v, GfxNodeVisitor::Stack st);
- | ^~~~~
-/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/entity.hh:294:8: note: by 'ost::gfx::Entity::Apply'
- 294 | void Apply(const gfx::MapHandleColorOp& op, bool store=true);
- | ^~~~~
-[ 89%] Linking CXX shared library ../../../stage/lib/libost_gui.so
-[ 89%] Linking CXX shared module ../../../../stage/lib/python3.13/dist-packages/ost/seq/_ost_seq.so
+[ 91%] Linking CXX shared library ../../../stage/lib/libost_gui.so
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_gui.dir/link.txt --verbose=1
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CMakeFiles/ost_gui.dir/data_viewer/info_panel.cc.o CMakeFiles/ost_gui.dir/data_viewer/img2qt.cc.o CMakeFiles/ost_gui.dir/data_viewer/mask_overlay.cc.o CMakeFiles/ost_gui.dir/data_viewer/null_overlay.cc.o CMakeFiles/ost_gui.dir/data_viewer/overlay_base.cc.o CMakeFiles/ost_gui.dir/data_viewer/overlay_manager.cc.o CMakeFiles/ost_gui.dir/data_viewer/overlay_manager_gui.cc.o CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay.cc.o CMakeFiles/ost_gui.dir/data_vi[ 91%] Linking CXX shared module ../../../stage/lib/python3.13/dist-packages/ost/conop/_ost_conop.so
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+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_ost_conop.dir/link.d -Wl,-z,relro -shared -o ../../../stage/lib/python3.13/dist-packages/ost/conop/_ost_conop.so CMakeFiles/_ost_conop.dir/wrap_conop.cc.o CMakeFiles/_ost_conop.dir/export_compound.cc.o CMakeFiles/_ost_conop.dir/export_processor.cc.o CMakeFiles/_ost_conop.dir/export_heuristic.cc.o CMakeFiles/_ost_conop.dir/export_amino_acids.cc.o CMakeFiles/_ost_conop.dir/export_conop.cc.o CMakeFiles/_ost_conop.dir/export_diag.cc.o CMakeFiles/_ost_conop.dir/export_rule_based.cc.o CMakeFiles/_ost_conop.dir/export_ring_finder.cc.o -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib: ../../../stage/lib/libost_conop.so.2.9.2 /usr/lib/i386-linux-gnu/libpython3.13.so /usr/lib/i386-linux-gnu/libboost_python313.so.1.83.0 ../../../stage/lib/libost_db.so.2.9.2 /usr/lib/i386-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.9.2 ../../../stage/lib/libost_mol.so.2.9.2 ../../../stage/lib/libost_info.so.2.9.2 ../../../stage/lib/libost_base.so.2.9.2 ../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/i386-linux-gnu/libboost_iostreams.so.1.83.0
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/conop/pymod/__init__.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/conop/./__init__.pyc\",\"__init__.py\",doraise=True)"
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/conop/pymod/cleanup.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/conop/./cleanup.pyc\",\"cleanup.py\",doraise=True)"
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 89%] Built target _ost_seq
-make -f modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build.make modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/depend
-make -f modules/db/pymod/CMakeFiles/_ost_db.dir/build.make modules/db/pymod/CMakeFiles/_ost_db.dir/depend
-make -f modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build.make modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/depend
-make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/DependInfo.cmake "--color="
+[ 91%] Built target _ost_conop
+make -f modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build.make modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/depend
+make -f modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build.make modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/db/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/pymod/CMakeFiles/_ost_db.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/gfx/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/DependInfo.cmake "--color="
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build.make modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build
-make -f modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build.make modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build
-make -f modules/db/pymod/CMakeFiles/_ost_db.dir/build.make modules/db/pymod/CMakeFiles/_ost_db.dir/build
-make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build.make modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build
+make -f modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build.make modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 89%] Building CXX object modules/db/pymod/CMakeFiles/_ost_db.dir/wrap_db.cc.o
-[ 89%] Building CXX object modules/db/pymod/CMakeFiles/_ost_db.dir/export_linear_db.cc.o
-[ 89%] Building CXX object modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/wrap_bindings.cc.o
-[ 89%] Building CXX object modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/export_tmalign.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_db_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/db/pymod/CMakeFiles/_ost_db.dir/export_linear_db.cc.o -MF CMakeFiles/_ost_db.dir/export_linear_db.cc.o.d -o CMakeFiles/_ost_db.dir/export_linear_db.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/db/pymod/export_linear_db.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_bindings_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/export_tmalign.cc.o -MF CMakeFiles/_ost_bindings.dir/export_tmalign.cc.o.d -o CMakeFiles/_ost_bindings.dir/export_tmalign.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/export_tmalign.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_db_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/db/pymod/CMakeFiles/_ost_db.dir/wrap_db.cc.o -MF CMakeFiles/_ost_db.dir/wrap_db.cc.o.d -o CMakeFiles/_ost_db.dir/wrap_db.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/db/pymod/wrap_db.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_bindings_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/wrap_bindings.cc.o -MF CMakeFiles/_ost_bindings.dir/wrap_bindings.cc.o.d -o CMakeFiles/_ost_bindings.dir/wrap_bindings.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/wrap_bindings.cc
-[ 89%] Building CXX object modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/wrap_seq_alg.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/wrap_seq_alg.cc.o -MF CMakeFiles/_ost_seq_alg.dir/wrap_seq_alg.cc.o.d -o CMakeFiles/_ost_seq_alg.dir/wrap_seq_alg.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/pymod/wrap_seq_alg.cc
+[ 91%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/wrap_mol_alg.cc.o
+[ 91%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_trajectory_analysis.cc.o
+[ 91%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_clash.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/wrap_mol_alg.cc.o -MF CMakeFiles/_ost_mol_alg.dir/wrap_mol_alg.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/wrap_mol_alg.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/wrap_mol_alg.cc
+[ 91%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/wrap_gfx.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_clash.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_clash.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_clash.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/export_clash.cc
+[ 91%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_structure_analysis.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/wrap_gfx.cc.o -MF CMakeFiles/_ost_gfx.dir/wrap_gfx.cc.o.d -o CMakeFiles/_ost_gfx.dir/wrap_gfx.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/pymod/wrap_gfx.cc
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_trajectory_analysis.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_trajectory_analysis.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_trajectory_analysis.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/export_trajectory_analysis.cc
+[ 91%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_svd_superpose.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_svd_superpose.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_svd_superpose.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_svd_superpose.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/export_svd_superpose.cc
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_structure_analysis.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_structure_analysis.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_structure_analysis.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/export_structure_analysis.cc
+[ 92%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_contact_overlap.cc.o
+[ 92%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_scene.cc.o
+[ 92%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_accessibility.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_contact_overlap.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_contact_overlap.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_contact_overlap.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/export_contact_overlap.cc
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_scene.cc.o -MF CMakeFiles/_ost_gfx.dir/export_scene.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_scene.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/pymod/export_scene.cc
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_accessibility.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_accessibility.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_accessibility.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/export_accessibility.cc
ewer/pointlist_overlay_base.cc.o CMakeFiles/ost_gui.dir/data_viewer/strategies.cc.o CMakeFiles/ost_gui.dir/data_viewer/viewer_normalizer.cc.o -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib: /usr/lib/i386-linux-gnu/libpython3.13.so /usr/lib/i386-linux-gnu/libboost_python313.so.1.83.0 ../../../stage/lib/libost_gfx.so.2.9.2 ../../../stage/lib/libost_io.so.2.9.2 ../../../stage/lib/libost_mol_alg.so.2.9.2 ../../../stage/lib/libost_seq_alg.so.2.9.2 /usr/lib/i386-linux-gnu/libOpenGL.so /usr/lib/i386-linux-gnu/libGLX.so /usr/lib/i386-linux-gnu/libGLU.so /usr/lib/i386-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_thread.so.1.83.0 ../../../stage/lib/libost_conop.so.2.9.2 ../../../stage/lib/libost_db.so.2.9.2 /usr/lib/i386-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.9.2 ../../../stage/lib/libost_mol.so.2.9.2 ../../../stage/lib/libost_img_alg.so.2.9.2 ../../../stage/lib/libost_img.so.2.9.2 ../../../stage/lib/libost_info.so.2.9.2 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libfftw3f_threads.so ../../../stage/lib/libost_base.so.2.9.2 ../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/i386-linux-gnu/libtiff.so /usr/lib/i386-linux-gnu/libpng.so /usr/lib/i386-linux-gnu/libz.so
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_gui.so.2.9.2 ../../../stage/lib/libost_gui.so.2.9 ../../../stage/lib/libost_gui.so
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 89%] Built target ost_gui
+[ 92%] Built target ost_gui
make -f modules/gui/src/CMakeFiles/gosty.dir/build.make modules/gui/src/CMakeFiles/gosty.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 89%] Generating qrc_dngr.cpp
+[ 92%] Generating qrc_dngr.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/rcc --name dngr --output /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/qrc_dngr.cpp /build/reproducible-path/openstructure-2.9.2/modules/gui/src/dngr.qrc
-[ 89%] Generating moc_gosty.cpp
+[ 92%] Generating moc_gosty.cpp
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/moc_gosty.cpp_parameters
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/gui/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/CMakeFiles/gosty.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make -f modules/gui/src/CMakeFiles/gosty.dir/build.make modules/gui/src/CMakeFiles/gosty.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 91%] Building CXX object modules/gui/src/CMakeFiles/gosty.dir/moc_gosty.cpp.o
-[ 91%] Building CXX object modules/gui/src/CMakeFiles/gosty.dir/qrc_dngr.cpp.o
-[ 91%] Building CXX object modules/gui/src/CMakeFiles/gosty.dir/gosty.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/gui/src/CMakeFiles/gosty.dir/qrc_dngr.cpp.o -MF CMakeFiles/gosty.dir/qrc_dngr.cpp.o.d -o CMakeFiles/gosty.dir/qrc_dngr.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/qrc_dngr.cpp
+[ 92%] Building CXX object modules/gui/src/CMakeFiles/gosty.dir/gosty.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/gui/src/CMakeFiles/gosty.dir/gosty.cc.o -MF CMakeFiles/gosty.dir/gosty.cc.o.d -o CMakeFiles/gosty.dir/gosty.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/src/gosty.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/gui/src/CMakeFiles/gosty.dir/moc_gosty.cpp.o -MF CMakeFiles/gosty.dir/moc_gosty.cpp.o.d -o CMakeFiles/gosty.dir/moc_gosty.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/moc_gosty.cpp
-/build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/export_tmalign.cc: In function 'ost::bindings::MMAlignResult WrapMMAlignView(const ost::mol::EntityView&, const ost::mol::EntityView&, bool, boost::python::dict&)':
-/build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/export_tmalign.cc:48:21: warning: comparison of integer expressions of different signedness: 'uint' {aka 'unsigned int'} and 'boost::python::ssize_t' {aka 'int'} [-Wsign-compare]
- 48 | for(uint i = 0; i < boost::python::len(keys); ++i) {
- | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 91%] Linking CXX executable ../../../stage/lib/openstructure/libexec/gosty
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/gosty.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/gosty.dir/link.d CMakeFiles/gosty.dir/gosty.cc.o CMakeFiles/gosty.dir/moc_gosty.cpp.o CMakeFiles/gosty.dir/qrc_dngr.cpp.o -o ../../../stage/lib/openstructure/libexec/gosty -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib: ../../../stage/lib/libost_gui.so.2.9.2 /usr/lib/i386-linux-gnu/libpython3.13.so /usr/lib/i386-linux-gnu/libboost_python313.so.1.83.0 ../../../stage/lib/libost_gfx.so.2.9.2 /usr/lib/i386-linux-gnu/libOpenGL.so /usr/lib/i386-linux-gnu/libGLX.so /usr/lib/i386-linux-gnu/libGLU.so ../../../stage/lib/libost_io.so.2.9.2 /usr/lib/i386-linux-gnu/libtiff.so /usr/lib/i386-linux-gnu/libpng.so /usr/lib/i386-linux-gnu/libz.so ../../../stage/lib/libost_mol_alg.so.2.9.2 ../../../stage/lib/libost_conop.so.2.9.2 ../../../stage/lib/libost_db.so.2.9.2 /usr/lib/i386-linux-gnu/libsqlite3.so ../../../stage/lib/libost_img_alg.so.2.9.2 ../../../stage/lib/libost_img.so.2.9.2 /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libfftw3f_threads.so /usr/lib/i386-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_thread.so.1.83.0 ../../../stage/lib/libost_seq_alg.so.2.9.2 ../../../stage/lib/libost_seq.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_iostreams.so.1.83.0 ../../../stage/lib/libost_mol.so.2.9.2 ../../../stage/lib/libost_info.so.2.9.2 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15 ../../../stage/lib/libost_base.so.2.9.2 ../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 91%] Built target gosty
-[ 91%] Linking CXX shared module ../../../stage/lib/python3.13/dist-packages/ost/bindings/_ost_bindings.so
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_bindings.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_ost_bindings.dir/link.d -Wl,-z,relro -shared -o ../../../stage/lib/python3.13/dist-packages/ost/bindings/_ost_bindings.so CMakeFiles/_ost_bindings.dir/export_tmalign.cc.o CMakeFiles/_ost_bindings.dir/wrap_bindings.cc.o -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib: ../../../stage/lib/libost_bindings.so.2.9.2 /usr/lib/i386-linux-gnu/libpython3.13.so /usr/lib/i386-linux-gnu/libboost_python313.so.1.83.0 ../../../stage/lib/libost_seq.so.2.9.2 ../../../stage/lib/libost_mol.so.2.9.2 ../../../stage/lib/libost_info.so.2.9.2 ../../../stage/lib/libost_base.so.2.9.2 ../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/i386-linux-gnu/libboost_iostreams.so.1.83.0
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/__init__.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./__init__.pyc\",\"__init__.py\",doraise=True)"
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/lga.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./lga.pyc\",\"lga.py\",doraise=True)"
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/hbplus.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./hbplus.pyc\",\"hbplus.py\",doraise=True)"
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/msms.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./msms.pyc\",\"msms.py\",doraise=True)"
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/tmtools.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./tmtools.pyc\",\"tmtools.py\",doraise=True)"
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/dssp.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./dssp.pyc\",\"dssp.py\",doraise=True)"
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/clustalw.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./clustalw.pyc\",\"clustalw.py\",doraise=True)"
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/utils.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./utils.pyc\",\"utils.py\",doraise=True)"
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/naccess.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./naccess.pyc\",\"naccess.py\",doraise=True)"
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/hhblits.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./hhblits.pyc\",\"hhblits.py\",doraise=True)"
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/hhblits2.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./hhblits2.pyc\",\"hhblits2.py\",doraise=True)"
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/hhblits3.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./hhblits3.pyc\",\"hhblits3.py\",doraise=True)"
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/blast.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./blast.pyc\",\"blast.py\",doraise=True)"
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/cadscore.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./cadscore.pyc\",\"cadscore.py\",doraise=True)"
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/kclust.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./kclust.pyc\",\"kclust.py\",doraise=True)"
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/ialign.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./ialign.pyc\",\"ialign.py\",doraise=True)"
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/mmseqs2.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./mmseqs2.pyc\",\"mmseqs2.py\",doraise=True)"
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod/dockq.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./dockq.pyc\",\"dockq.py\",doraise=True)"
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 91%] Built target _ost_bindings
-[ 91%] Linking CXX shared module ../../../stage/lib/python3.13/dist-packages/ost/db/_ost_db.so
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_db.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_ost_db.dir/link.d -Wl,-z,relro -shared -o ../../../stage/lib/python3.13/dist-packages/ost/db/_ost_db.so CMakeFiles/_ost_db.dir/export_linear_db.cc.o CMakeFiles/_ost_db.dir/wrap_db.cc.o -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib: ../../../stage/lib/libost_db.so.2.9.2 /usr/lib/i386-linux-gnu/libpython3.13.so /usr/lib/i386-linux-gnu/libboost_python313.so.1.83.0 /usr/lib/i386-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_iostreams.so.1.83.0 ../../../stage/lib/libost_mol.so.2.9.2 ../../../stage/lib/libost_info.so.2.9.2 ../../../stage/lib/libost_base.so.2.9.2 ../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/db/pymod/__init__.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/db/./__init__.pyc\",\"__init__.py\",doraise=True)"
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 91%] Built target _ost_db
-make -f modules/conop/pymod/CMakeFiles/_ost_conop.dir/build.make modules/conop/pymod/CMakeFiles/_ost_conop.dir/depend
-make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
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-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/wrap_conop.cc.o -MF CMakeFiles/_ost_conop.dir/wrap_conop.cc.o.d -o CMakeFiles/_ost_conop.dir/wrap_conop.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/conop/pymod/wrap_conop.cc
-[ 92%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_conop.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_compound.cc.o -MF CMakeFiles/_ost_conop.dir/export_compound.cc.o.d -o CMakeFiles/_ost_conop.dir/export_compound.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/conop/pymod/export_compound.cc
-[ 92%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_diag.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_processor.cc.o -MF CMakeFiles/_ost_conop.dir/export_processor.cc.o.d -o CMakeFiles/_ost_conop.dir/export_processor.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/conop/pymod/export_processor.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_heuristic.cc.o -MF CMakeFiles/_ost_conop.dir/export_heuristic.cc.o.d -o CMakeFiles/_ost_conop.dir/export_heuristic.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/conop/pymod/export_heuristic.cc
-[ 92%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_ring_finder.cc.o
-[ 92%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_rule_based.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_amino_acids.cc.o -MF CMakeFiles/_ost_conop.dir/export_amino_acids.cc.o.d -o CMakeFiles/_ost_conop.dir/export_amino_acids.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/conop/pymod/export_amino_acids.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_conop.cc.o -MF CMakeFiles/_ost_conop.dir/export_conop.cc.o.d -o CMakeFiles/_ost_conop.dir/export_conop.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/conop/pymod/export_conop.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_diag.cc.o -MF CMakeFiles/_ost_conop.dir/export_diag.cc.o.d -o CMakeFiles/_ost_conop.dir/export_diag.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/conop/pymod/export_diag.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_ring_finder.cc.o -MF CMakeFiles/_ost_conop.dir/export_ring_finder.cc.o.d -o CMakeFiles/_ost_conop.dir/export_ring_finder.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/conop/pymod/export_ring_finder.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_rule_based.cc.o -MF CMakeFiles/_ost_conop.dir/export_rule_based.cc.o.d -o CMakeFiles/_ost_conop.dir/export_rule_based.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/conop/pymod/export_rule_based.cc
-[ 92%] Linking CXX shared module ../../../stage/lib/python3.13/dist-packages/ost/conop/_ost_conop.so
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_conop.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_ost_conop.dir/link.d -Wl,-z,relro -shared -o ../../../stage/lib/python3.13/dist-packages/ost/conop/_ost_conop.so CMakeFiles/_ost_conop.dir/wrap_conop.cc.o CMakeFiles/_ost_conop.dir/export_compound.cc.o CMakeFiles/_ost_conop.dir/export_processor.cc.o CMakeFiles/_ost_conop.dir/export_heuristic.cc.o CMakeFiles/_ost_conop.dir/export_amino_acids.cc.o CMakeFiles/_ost_conop.dir/export_conop.cc.o CMakeFiles/_ost_conop.dir/export_diag.cc.o CMakeFiles/_ost_conop.dir/export_rule_based.cc.o CMakeFiles/_ost_conop.dir/export_ring_finder.cc.o -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib: ../../../stage/lib/libost_conop.so.2.9.2 /usr/lib/i386-linux-gnu/libpython3.13.so /usr/lib/i386-linux-gnu/libboost_python313.so.1.83.0 ../../../stage/lib/libost_db.so.2.9.2 /usr/lib/i386-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.9.2 ../../../stage/lib/libost_mol.so.2.9.2 ../../../stage/lib/libost_info.so.2.9.2 ../../../stage/lib/libost_base.so.2.9.2 ../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/i386-linux-gnu/libboost_iostreams.so.1.83.0
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/conop/pymod/__init__.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/conop/./__init__.pyc\",\"__init__.py\",doraise=True)"
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/conop/pymod/cleanup.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/conop/./cleanup.pyc\",\"cleanup.py\",doraise=True)"
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 92%] Built target _ost_conop
-make -f modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build.make modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/depend
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-make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 92%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/wrap_gfx.cc.o
-[ 92%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_entity.cc.o
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-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/wrap_gfx.cc.o -MF CMakeFiles/_ost_gfx.dir/wrap_gfx.cc.o.d -o CMakeFiles/_ost_gfx.dir/wrap_gfx.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/pymod/wrap_gfx.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_entity.cc.o -MF CMakeFiles/_ost_gfx.dir/export_entity.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_entity.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/pymod/export_entity.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_scene.cc.o -MF CMakeFiles/_ost_gfx.dir/export_scene.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_scene.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/pymod/export_scene.cc
-[ 92%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_symmetry_node.cc.o
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-[ 92%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_surface.cc.o
-[ 92%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_primlist.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_symmetry_node.cc.o -MF CMakeFiles/_ost_gfx.dir/export_symmetry_node.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_symmetry_node.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/pymod/export_symmetry_node.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_gfx_node.cc.o -MF CMakeFiles/_ost_gfx.dir/export_gfx_node.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_gfx_node.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/pymod/export_gfx_node.cc
-[ 93%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_gfx_obj.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_surface.cc.o -MF CMakeFiles/_ost_gfx.dir/export_surface.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_surface.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/pymod/export_surface.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_primlist.cc.o -MF CMakeFiles/_ost_gfx.dir/export_primlist.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_primlist.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/pymod/export_primlist.cc
-[ 93%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_primitives.cc.o
-[ 93%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_scene_observer.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_gfx_obj.cc.o -MF CMakeFiles/_ost_gfx.dir/export_gfx_obj.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_gfx_obj.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/pymod/export_gfx_obj.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_primitives.cc.o -MF CMakeFiles/_ost_gfx.dir/export_primitives.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_primitives.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/pymod/export_primitives.cc
-[ 93%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_gradient.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_scene_observer.cc.o -MF CMakeFiles/_ost_gfx.dir/export_scene_observer.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_scene_observer.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/pymod/export_scene_observer.cc
-[ 93%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_color.cc.o
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-[ 94%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_glwin_base.cc.o
-[ 94%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_exporter.cc.o
-[ 94%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_color_ops.cc.o
-[ 94%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_bitmap.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_render_options.cc.o -MF CMakeFiles/_ost_gfx.dir/export_render_options.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_render_options.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/pymod/export_render_options.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_color.cc.o -MF CMakeFiles/_ost_gfx.dir/export_color.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_color.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/pymod/export_color.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_glwin_base.cc.o -MF CMakeFiles/_ost_gfx.dir/export_glwin_base.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_glwin_base.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/pymod/export_glwin_base.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_color_ops.cc.o -MF CMakeFiles/_ost_gfx.dir/export_color_ops.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_color_ops.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/pymod/export_color_ops.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_exporter.cc.o -MF CMakeFiles/_ost_gfx.dir/export_exporter.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_exporter.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/pymod/export_exporter.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_bitmap.cc.o -MF CMakeFiles/_ost_gfx.dir/export_bitmap.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_bitmap.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/pymod/export_bitmap.cc
-[ 94%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_map.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_map.cc.o -MF CMakeFiles/_ost_gfx.dir/export_map.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_map.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/pymod/export_map.cc
In file included from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/prim_list.hh:30,
from /build/reproducible-path/openstructure-2.9.2/modules/gfx/pymod/wrap_gfx.cc:27:
/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/gfx_object.hh:124:31: warning: 'virtual geom::AlignedCuboid ost::gfx::GfxObj::GetBoundingBox(bool) const' was hidden [-Woverloaded-virtual=]
@@ -21856,49 +21880,61 @@
/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/gfx_test_object.hh:40:31: note: by 'virtual geom::AlignedCuboid ost::gfx::GfxTestObj::GetBoundingBox() const'
40 | virtual geom::AlignedCuboid GetBoundingBox() const;
| ^~~~~~~~~~~~~~
-[ 94%] Linking CXX shared module ../../../../stage/lib/python3.13/dist-packages/ost/seq/alg/_ost_seq_alg.so
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_seq_alg.dir/link.txt --verbose=1
-/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_ost_seq_alg.dir/link.d -Wl,-z,relro -shared -o ../../../../stage/lib/python3.13/dist-packages/ost/seq/alg/_ost_seq_alg.so CMakeFiles/_ost_seq_alg.dir/wrap_seq_alg.cc.o -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib: ../../../../stage/lib/libost_seq_alg.so.2.9.2 /usr/lib/i386-linux-gnu/libpython3.13.so /usr/lib/i386-linux-gnu/libboost_python313.so.1.83.0 ../../../../stage/lib/libost_seq.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_iostreams.so.1.83.0 ../../../../stage/lib/libost_mol.so.2.9.2 ../../../../stage/lib/libost_info.so.2.9.2 ../../../../stage/lib/libost_base.so.2.9.2 ../../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/seq/alg/pymod/__init__.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/seq/alg/./__init__.pyc\",\"__init__.py\",doraise=True)"
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/seq/alg/pymod/mat.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/seq/alg/./mat.pyc\",\"mat.py\",doraise=True)"
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/seq/alg/pymod/renumber.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/seq/alg/./renumber.pyc\",\"renumber.py\",doraise=True)"
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.9.2/modules/seq/alg/pymod/aaindex.py\",\"/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/seq/alg/./aaindex.pyc\",\"aaindex.py\",doraise=True)"
-make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 94%] Built target _ost_seq_alg
-make -f modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build.make modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/depend
-make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/DependInfo.cmake "--color="
+[ 92%] Building CXX object modules/gui/src/CMakeFiles/gosty.dir/moc_gosty.cpp.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/gui/src/CMakeFiles/gosty.dir/moc_gosty.cpp.o -MF CMakeFiles/gosty.dir/moc_gosty.cpp.o.d -o CMakeFiles/gosty.dir/moc_gosty.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/moc_gosty.cpp
+[ 93%] Building CXX object modules/gui/src/CMakeFiles/gosty.dir/qrc_dngr.cpp.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/gui/src/CMakeFiles/gosty.dir/qrc_dngr.cpp.o -MF CMakeFiles/gosty.dir/qrc_dngr.cpp.o.d -o CMakeFiles/gosty.dir/qrc_dngr.cpp.o -c /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/qrc_dngr.cpp
+[ 93%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_gfx_node.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_gfx_node.cc.o -MF CMakeFiles/_ost_gfx.dir/export_gfx_node.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_gfx_node.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/pymod/export_gfx_node.cc
+[ 93%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_sec_structure.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_sec_structure.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_sec_structure.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_sec_structure.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/export_sec_structure.cc
+[ 93%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_non_standard.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_non_standard.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_non_standard.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_non_standard.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/export_non_standard.cc
+[ 93%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_molck.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_molck.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_molck.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_molck.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/export_molck.cc
+[ 93%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_symmetry_node.cc.o
+[ 93%] Linking CXX executable ../../../stage/lib/openstructure/libexec/gosty
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/gosty.dir/link.txt --verbose=1
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_symmetry_node.cc.o -MF CMakeFiles/_ost_gfx.dir/export_symmetry_node.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_symmetry_node.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/pymod/export_symmetry_node.cc
+[ 94%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_gfx_obj.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_gfx_obj.cc.o -MF CMakeFiles/_ost_gfx.dir/export_gfx_obj.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_gfx_obj.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/pymod/export_gfx_obj.cc
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/gosty.dir/link.d CMakeFiles/gosty.dir/gosty.cc.o CMakeFiles/gosty.dir/moc_gosty.cpp.o CMakeFiles/gosty.dir/qrc_dngr.cpp.o -o ../../../stage/lib/openstructure/libexec/gosty -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib: ../../../stage/lib/libost_gui.so.2.9.2 /usr/lib/i386-linux-gnu/libpython3.13.so /usr/lib/i386-linux-gnu/libboost_python313.so.1.83.0 ../../../stage/lib/libost_gfx.so.2.9.2 /usr/lib/i386-linux-gnu/libOpenGL.so /usr/lib/i386-linux-gnu/libGLX.so /usr/lib/i386-linux-gnu/libGLU.so ../../../stage/lib/libost_io.so.2.9.2 /usr/lib/i386-linux-gnu/libtiff.so /usr/lib/i386-linux-gnu/libpng.so /usr/lib/i386-linux-gnu/libz.so ../../../stage/lib/libost_mol_alg.so.2.9.2 ../../../stage/lib/libost_conop.so.2.9.2 ../../../stage/lib/libost_db.so.2.9.2 /usr/lib/i386-linux-gnu/libsqlite3.so ../../../stage/lib/libost_img_alg.so.2.9.2 ../../../stage/lib/libost_img.so.2.9.2 /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libfftw3f_threads.so /usr/lib/i386-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_thread.so.1.83.0 ../../../stage/lib/libost_seq_alg.so.2.9.2 ../../../stage/lib/libost_seq.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_iostreams.so.1.83.0 ../../../stage/lib/libost_mol.so.2.9.2 ../../../stage/lib/libost_info.so.2.9.2 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15 ../../../stage/lib/libost_base.so.2.9.2 ../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build.make modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build
-make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 94%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_clash.cc.o
-[ 94%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/wrap_mol_alg.cc.o
-[ 94%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_accessibility.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/wrap_mol_alg.cc.o -MF CMakeFiles/_ost_mol_alg.dir/wrap_mol_alg.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/wrap_mol_alg.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/wrap_mol_alg.cc
-[ 94%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_structure_analysis.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_clash.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_clash.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_clash.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/export_clash.cc
-[ 94%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_non_standard.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_accessibility.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_accessibility.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_accessibility.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/export_accessibility.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_structure_analysis.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_structure_analysis.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_structure_analysis.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/export_structure_analysis.cc
+[ 94%] Built target gosty
[ 94%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_membrane.cc.o
-[ 94%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_sec_structure.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_non_standard.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_non_standard.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_non_standard.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/export_non_standard.cc
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_membrane.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_membrane.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_membrane.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/export_membrane.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_sec_structure.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_sec_structure.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_sec_structure.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/export_sec_structure.cc
-[ 94%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_trajectory_analysis.cc.o
-[ 94%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_svd_superpose.cc.o
+[ 94%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_entity.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_entity.cc.o -MF CMakeFiles/_ost_gfx.dir/export_entity.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_entity.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/pymod/export_entity.cc
[ 94%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_entity_to_density.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_trajectory_analysis.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_trajectory_analysis.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_trajectory_analysis.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/export_trajectory_analysis.cc
-[ 96%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_contact_overlap.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_svd_superpose.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_svd_superpose.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_svd_superpose.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/export_svd_superpose.cc
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_entity_to_density.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_entity_to_density.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_entity_to_density.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/export_entity_to_density.cc
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-[ 96%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_molck.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_molck.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_molck.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_molck.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/export_molck.cc
-[ 96%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_gdt.cc.o
-[ 96%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_biounit.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_gdt.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_gdt.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_gdt.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/export_gdt.cc
+[ 94%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_biounit.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_biounit.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_biounit.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_biounit.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/export_biounit.cc
+[ 94%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_gdt.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_gdt.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_gdt.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_gdt.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod/export_gdt.cc
+[ 94%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_surface.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_surface.cc.o -MF CMakeFiles/_ost_gfx.dir/export_surface.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_surface.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/pymod/export_surface.cc
+[ 94%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_primitives.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_primitives.cc.o -MF CMakeFiles/_ost_gfx.dir/export_primitives.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_primitives.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/pymod/export_primitives.cc
+[ 94%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_primlist.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_primlist.cc.o -MF CMakeFiles/_ost_gfx.dir/export_primlist.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_primlist.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/pymod/export_primlist.cc
+[ 94%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_scene_observer.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_scene_observer.cc.o -MF CMakeFiles/_ost_gfx.dir/export_scene_observer.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_scene_observer.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/pymod/export_scene_observer.cc
+[ 94%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_render_options.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_render_options.cc.o -MF CMakeFiles/_ost_gfx.dir/export_render_options.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_render_options.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/pymod/export_render_options.cc
+[ 94%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_gradient.cc.o
+[ 94%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_color.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_color.cc.o -MF CMakeFiles/_ost_gfx.dir/export_color.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_color.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/pymod/export_color.cc
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_gradient.cc.o -MF CMakeFiles/_ost_gfx.dir/export_gradient.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_gradient.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/pymod/export_gradient.cc
+[ 94%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_color_ops.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_color_ops.cc.o -MF CMakeFiles/_ost_gfx.dir/export_color_ops.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_color_ops.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/pymod/export_color_ops.cc
+[ 96%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_exporter.cc.o
+[ 94%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_glwin_base.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_exporter.cc.o -MF CMakeFiles/_ost_gfx.dir/export_exporter.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_exporter.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/pymod/export_exporter.cc
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_glwin_base.cc.o -MF CMakeFiles/_ost_gfx.dir/export_glwin_base.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_glwin_base.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/pymod/export_glwin_base.cc
+[ 96%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_bitmap.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_bitmap.cc.o -MF CMakeFiles/_ost_gfx.dir/export_bitmap.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_bitmap.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/pymod/export_bitmap.cc
+[ 96%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_map.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_map.cc.o -MF CMakeFiles/_ost_gfx.dir/export_map.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_map.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/pymod/export_map.cc
[ 96%] Linking CXX shared module ../../../stage/lib/python3.13/dist-packages/ost/gfx/_ost_gfx.so
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/pymod/gradients.xml /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/share/openstructure/scene/gradients.xml
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_gfx.dir/link.txt --verbose=1
@@ -21938,18 +21974,18 @@
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make -f modules/io/pymod/CMakeFiles/_ost_io.dir/build.make modules/io/pymod/CMakeFiles/_ost_io.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 96%] Building CXX object modules/io/pymod/CMakeFiles/_ost_io.dir/wrap_io.cc.o
[ 96%] Building CXX object modules/io/pymod/CMakeFiles/_ost_io.dir/export_pdb_io.cc.o
+[ 96%] Building CXX object modules/io/pymod/CMakeFiles/_ost_io.dir/wrap_io.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/pymod/CMakeFiles/_ost_io.dir/export_pdb_io.cc.o -MF CMakeFiles/_ost_io.dir/export_pdb_io.cc.o.d -o CMakeFiles/_ost_io.dir/export_pdb_io.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/pymod/export_pdb_io.cc
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/pymod/CMakeFiles/_ost_io.dir/wrap_io.cc.o -MF CMakeFiles/_ost_io.dir/wrap_io.cc.o.d -o CMakeFiles/_ost_io.dir/wrap_io.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/pymod/wrap_io.cc
[ 97%] Building CXX object modules/io/pymod/CMakeFiles/_ost_io.dir/export_mmcif_io.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/pymod/CMakeFiles/_ost_io.dir/export_mmcif_io.cc.o -MF CMakeFiles/_ost_io.dir/export_mmcif_io.cc.o.d -o CMakeFiles/_ost_io.dir/export_mmcif_io.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/pymod/export_mmcif_io.cc
+[ 97%] Building CXX object modules/io/pymod/CMakeFiles/_ost_io.dir/export_sdf_io.cc.o
[ 97%] Building CXX object modules/io/pymod/CMakeFiles/_ost_io.dir/export_omf_io.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/pymod/CMakeFiles/_ost_io.dir/wrap_io.cc.o -MF CMakeFiles/_ost_io.dir/wrap_io.cc.o.d -o CMakeFiles/_ost_io.dir/wrap_io.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/pymod/wrap_io.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/pymod/CMakeFiles/_ost_io.dir/export_pdb_io.cc.o -MF CMakeFiles/_ost_io.dir/export_pdb_io.cc.o.d -o CMakeFiles/_ost_io.dir/export_pdb_io.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/pymod/export_pdb_io.cc
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/pymod/CMakeFiles/_ost_io.dir/export_sdf_io.cc.o -MF CMakeFiles/_ost_io.dir/export_sdf_io.cc.o.d -o CMakeFiles/_ost_io.dir/export_sdf_io.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/pymod/export_sdf_io.cc
[ 97%] Building CXX object modules/io/pymod/CMakeFiles/_ost_io.dir/export_map_io.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/pymod/CMakeFiles/_ost_io.dir/export_mmcif_io.cc.o -MF CMakeFiles/_ost_io.dir/export_mmcif_io.cc.o.d -o CMakeFiles/_ost_io.dir/export_mmcif_io.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/pymod/export_mmcif_io.cc
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/pymod/CMakeFiles/_ost_io.dir/export_omf_io.cc.o -MF CMakeFiles/_ost_io.dir/export_omf_io.cc.o.d -o CMakeFiles/_ost_io.dir/export_omf_io.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/pymod/export_omf_io.cc
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cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/pymod/CMakeFiles/_ost_io.dir/export_map_io.cc.o -MF CMakeFiles/_ost_io.dir/export_map_io.cc.o.d -o CMakeFiles/_ost_io.dir/export_map_io.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/pymod/export_map_io.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_io_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/pymod/CMakeFiles/_ost_io.dir/export_sdf_io.cc.o -MF CMakeFiles/_ost_io.dir/export_sdf_io.cc.o.d -o CMakeFiles/_ost_io.dir/export_sdf_io.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/pymod/export_sdf_io.cc
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/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_ost_io.dir/link.d -Wl,-z,relro -shared -o ../../../stage/lib/python3.13/dist-packages/ost/io/_ost_io.so CMakeFiles/_ost_io.dir/wrap_io.cc.o CMakeFiles/_ost_io.dir/export_pdb_io.cc.o CMakeFiles/_ost_io.dir/export_mmcif_io.cc.o CMakeFiles/_ost_io.dir/export_omf_io.cc.o CMakeFiles/_ost_io.dir/export_map_io.cc.o CMakeFiles/_ost_io.dir/export_sdf_io.cc.o -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib: ../../../stage/lib/libost_io.so.2.9.2 /usr/lib/i386-linux-gnu/libpython3.13.so /usr/lib/i386-linux-gnu/libboost_python313.so.1.83.0 ../../../stage/lib/libost_mol_alg.so.2.9.2 ../../../stage/lib/libost_conop.so.2.9.2 ../../../stage/lib/libost_db.so.2.9.2 /usr/lib/i386-linux-gnu/libsqlite3.so /usr/lib/i386-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_thread.so.1.83.0 ../../../stage/lib/libost_seq_alg.so.2.9.2 ../../../stage/lib/libost_seq.so.2.9.2 ../../../stage/lib/libost_mol.so.2.9.2 ../../../stage/lib/libost_img_alg.so.2.9.2 ../../../stage/lib/libost_img.so.2.9.2 ../../../stage/lib/libost_info.so.2.9.2 ../../../stage/lib/libost_base.so.2.9.2 ../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libfftw3f_threads.so /usr/lib/i386-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/i386-linux-gnu/libtiff.so /usr/lib/i386-linux-gnu/libpng.so /usr/lib/i386-linux-gnu/libz.so
@@ -21964,52 +22000,42 @@
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cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/wrap_gui.cc.o -MF CMakeFiles/_ost_gui.dir/wrap_gui.cc.o.d -o CMakeFiles/_ost_gui.dir/wrap_gui.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/wrap_gui.cc
+[ 97%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_alignment_view.cc.o
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-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_scene_selection.cc.o -MF CMakeFiles/_ost_gui.dir/export_scene_selection.cc.o.d -o CMakeFiles/_ost_gui.dir/export_scene_selection.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/export_scene_selection.cc
-[ 97%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_py_shell.cc.o
-[ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_scene_win.cc.o
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cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_message_widget.cc.o -MF CMakeFiles/_ost_gui.dir/export_message_widget.cc.o.d -o CMakeFiles/_ost_gui.dir/export_message_widget.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/export_message_widget.cc
-[ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_gosty.cc.o
+[ 97%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_tool.cc.o
+[ 97%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_gl_win.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_gl_win.cc.o -MF CMakeFiles/_ost_gui.dir/export_gl_win.cc.o.d -o CMakeFiles/_ost_gui.dir/export_gl_win.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/export_gl_win.cc
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_tool.cc.o -MF CMakeFiles/_ost_gui.dir/export_tool.cc.o.d -o CMakeFiles/_ost_gui.dir/export_tool.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/export_tool.cc
-[ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_perspective.cc.o
-[ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_sip_handler.cc.o
+[ 97%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_py_shell.cc.o
+[ 97%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_gosty.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_py_shell.cc.o -MF CMakeFiles/_ost_gui.dir/export_py_shell.cc.o.d -o CMakeFiles/_ost_gui.dir/export_py_shell.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/export_py_shell.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_scene_win.cc.o -MF CMakeFiles/_ost_gui.dir/export_scene_win.cc.o.d -o CMakeFiles/_ost_gui.dir/export_scene_win.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/export_scene_win.cc
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_gosty.cc.o -MF CMakeFiles/_ost_gui.dir/export_gosty.cc.o.d -o CMakeFiles/_ost_gui.dir/export_gosty.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/export_gosty.cc
+[ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_scene_win.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_scene_win.cc.o -MF CMakeFiles/_ost_gui.dir/export_scene_win.cc.o.d -o CMakeFiles/_ost_gui.dir/export_scene_win.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/export_scene_win.cc
+[ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_sequence_viewer.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_sequence_viewer.cc.o -MF CMakeFiles/_ost_gui.dir/export_sequence_viewer.cc.o.d -o CMakeFiles/_ost_gui.dir/export_sequence_viewer.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/export_sequence_viewer.cc
+[ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_perspective.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_perspective.cc.o -MF CMakeFiles/_ost_gui.dir/export_perspective.cc.o.d -o CMakeFiles/_ost_gui.dir/export_perspective.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/export_perspective.cc
+[ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_sip_handler.cc.o
+[ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_scene_selection.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_scene_selection.cc.o -MF CMakeFiles/_ost_gui.dir/export_scene_selection.cc.o.d -o CMakeFiles/_ost_gui.dir/export_scene_selection.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/export_scene_selection.cc
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_sip_handler.cc.o -MF CMakeFiles/_ost_gui.dir/export_sip_handler.cc.o.d -o CMakeFiles/_ost_gui.dir/export_sip_handler.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/export_sip_handler.cc
-[ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_sequence_viewer.cc.o
[ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_main_area.cc.o
-[ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_panels.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_sequence_viewer.cc.o -MF CMakeFiles/_ost_gui.dir/export_sequence_viewer.cc.o.d -o CMakeFiles/_ost_gui.dir/export_sequence_viewer.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/export_sequence_viewer.cc
-[ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_menu_bar.cc.o
-[ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_file_viewer.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_main_area.cc.o -MF CMakeFiles/_ost_gui.dir/export_main_area.cc.o.d -o CMakeFiles/_ost_gui.dir/export_main_area.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/export_main_area.cc
+[ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_panels.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_panels.cc.o -MF CMakeFiles/_ost_gui.dir/export_panels.cc.o.d -o CMakeFiles/_ost_gui.dir/export_panels.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/export_panels.cc
+[ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_menu_bar.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_menu_bar.cc.o -MF CMakeFiles/_ost_gui.dir/export_menu_bar.cc.o.d -o CMakeFiles/_ost_gui.dir/export_menu_bar.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/export_menu_bar.cc
-[ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_gl_canvas.cc.o
+[ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_file_loader.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_file_loader.cc.o -MF CMakeFiles/_ost_gui.dir/export_file_loader.cc.o.d -o CMakeFiles/_ost_gui.dir/export_file_loader.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/export_file_loader.cc
+[ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_file_viewer.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_file_viewer.cc.o -MF CMakeFiles/_ost_gui.dir/export_file_viewer.cc.o.d -o CMakeFiles/_ost_gui.dir/export_file_viewer.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/export_file_viewer.cc
-[100%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_overlay.cc.o
[100%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_widget.cc.o
-[100%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/data_viewer_proxy.cc.o
-[100%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_data_viewer.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_gl_canvas.cc.o -MF CMakeFiles/_ost_gui.dir/export_gl_canvas.cc.o.d -o CMakeFiles/_ost_gui.dir/export_gl_canvas.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/export_gl_canvas.cc
-[100%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_file_loader.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_overlay.cc.o -MF CMakeFiles/_ost_gui.dir/export_overlay.cc.o.d -o CMakeFiles/_ost_gui.dir/export_overlay.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/export_overlay.cc
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_widget.cc.o -MF CMakeFiles/_ost_gui.dir/export_widget.cc.o.d -o CMakeFiles/_ost_gui.dir/export_widget.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/export_widget.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/data_viewer_proxy.cc.o -MF CMakeFiles/_ost_gui.dir/data_viewer_proxy.cc.o.d -o CMakeFiles/_ost_gui.dir/data_viewer_proxy.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/data_viewer_proxy.cc
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-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_file_loader.cc.o -MF CMakeFiles/_ost_gui.dir/export_file_loader.cc.o.d -o CMakeFiles/_ost_gui.dir/export_file_loader.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/export_file_loader.cc
-[100%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_overlay_manager.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_overlay_manager.cc.o -MF CMakeFiles/_ost_gui.dir/export_overlay_manager.cc.o.d -o CMakeFiles/_ost_gui.dir/export_overlay_manager.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/export_overlay_manager.cc
In file included from /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/export_scene_selection.cc:23:
/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/gfx_node.hh:55:16: warning: 'virtual void ost::gfx::GfxNode::DeepSwap(ost::gfx::GfxNode&)' was hidden [-Woverloaded-virtual=]
55 | virtual void DeepSwap(GfxNode& n);
@@ -22020,6 +22046,16 @@
/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/gfx_object.hh:58:16: note: by 'virtual void ost::gfx::GfxObj::DeepSwap(ost::gfx::GfxObj&)'
58 | virtual void DeepSwap(GfxObj& go);
| ^~~~~~~~
+[100%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_gl_canvas.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_gl_canvas.cc.o -MF CMakeFiles/_ost_gui.dir/export_gl_canvas.cc.o.d -o CMakeFiles/_ost_gui.dir/export_gl_canvas.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/export_gl_canvas.cc
+[100%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/data_viewer_proxy.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/data_viewer_proxy.cc.o -MF CMakeFiles/_ost_gui.dir/data_viewer_proxy.cc.o.d -o CMakeFiles/_ost_gui.dir/data_viewer_proxy.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/data_viewer_proxy.cc
+[100%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_data_viewer.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_data_viewer.cc.o -MF CMakeFiles/_ost_gui.dir/export_data_viewer.cc.o.d -o CMakeFiles/_ost_gui.dir/export_data_viewer.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/export_data_viewer.cc
+[100%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_overlay.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_overlay.cc.o -MF CMakeFiles/_ost_gui.dir/export_overlay.cc.o.d -o CMakeFiles/_ost_gui.dir/export_overlay.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/export_overlay.cc
+[100%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_overlay_manager.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_overlay_manager.cc.o -MF CMakeFiles/_ost_gui.dir/export_overlay_manager.cc.o.d -o CMakeFiles/_ost_gui.dir/export_overlay_manager.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/export_overlay_manager.cc
[100%] Linking CXX shared module ../../../stage/lib/python3.13/dist-packages/ost/gui/_ost_gui.so
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/presets.xml /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/share/openstructure/scene/presets.xml
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod/scene/icons/color_icon.png /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/share/openstructure/scene/icons/color_icon.png
@@ -22099,7 +22135,7 @@
/usr/bin/cmake -E cmake_progress_start /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/CMakeFiles 0
make[1]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
dh_auto_test
- cd obj-i686-linux-gnu && make -j22 check ARGS\+=--verbose ARGS\+=-j22
+ cd obj-i686-linux-gnu && make -j10 check ARGS\+=--verbose ARGS\+=-j10
make[1]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
/usr/bin/cmake -S/build/reproducible-path/openstructure-2.9.2 -B/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
make -f CMakeFiles/Makefile2 check
@@ -22110,1080 +22146,1130 @@
make[3]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make -f scripts/CMakeFiles/subst_ost_startup.py.dir/build.make scripts/CMakeFiles/subst_ost_startup.py.dir/depend
make -f modules/base/src/CMakeFiles/create_stage.dir/build.make modules/base/src/CMakeFiles/create_stage.dir/depend
-make -f scripts/CMakeFiles/subst_ost_config.dir/build.make scripts/CMakeFiles/subst_ost_config.dir/depend
-make -f scripts/CMakeFiles/subst_ost.dir/build.make scripts/CMakeFiles/subst_ost.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/scripts /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/scripts /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/scripts/CMakeFiles/subst_ost_startup.py.dir/DependInfo.cmake "--color="
-make -f scripts/CMakeFiles/subst_dng.dir/build.make scripts/CMakeFiles/subst_dng.dir/depend
+make -f scripts/CMakeFiles/subst_ost_config.dir/build.make scripts/CMakeFiles/subst_ost_config.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src/CMakeFiles/create_stage.dir/DependInfo.cmake "--color="
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f scripts/CMakeFiles/subst_ost.dir/build.make scripts/CMakeFiles/subst_ost.dir/depend
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/scripts /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/scripts /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/scripts/CMakeFiles/subst_ost_config.dir/DependInfo.cmake "--color="
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f scripts/CMakeFiles/subst_dng.dir/build.make scripts/CMakeFiles/subst_dng.dir/depend
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/scripts /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/scripts /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/scripts/CMakeFiles/subst_ost.dir/DependInfo.cmake "--color="
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/scripts /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/scripts /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/scripts/CMakeFiles/subst_dng.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/base/src/CMakeFiles/create_stage.dir/build.make modules/base/src/CMakeFiles/create_stage.dir/build
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib
make -f scripts/CMakeFiles/subst_ost_startup.py.dir/build.make scripts/CMakeFiles/subst_ost_startup.py.dir/build
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/base/src/CMakeFiles/create_stage.dir/build.make modules/base/src/CMakeFiles/create_stage.dir/build
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/openstructure-2.9.2/scripts/ost_startup.py.in -DOUT_FILE=ost_startup.py -DBUILD_TYPE=Release -DPython_EXECUTABLE=/usr/bin/python3 -DPython_VERSION=3.13.2 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.13/dist-packages/ -P /build/reproducible-path/openstructure-2.9.2/cmake_support/substitute.cmake
make -f scripts/CMakeFiles/subst_ost_config.dir/build.make scripts/CMakeFiles/subst_ost_config.dir/build
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/bin
make -f scripts/CMakeFiles/subst_ost.dir/build.make scripts/CMakeFiles/subst_ost.dir/build
-make -f scripts/CMakeFiles/subst_dng.dir/build.make scripts/CMakeFiles/subst_dng.dir/build
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/openstructure-2.9.2/scripts/ost_startup.py.in -DOUT_FILE=ost_startup.py -DBUILD_TYPE=Release -DPython_EXECUTABLE=/usr/bin/python3 -DPython_VERSION=3.13.2 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.13/dist-packages/ -P /build/reproducible-path/openstructure-2.9.2/cmake_support/substitute.cmake
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/openstructure-2.9.2/scripts/ost_config.in -DOUT_FILE=ost_config -DBUILD_TYPE=Release -DPython_EXECUTABLE=/usr/bin/python3 -DPython_VERSION=3.13.2 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.13/dist-packages/ -P /build/reproducible-path/openstructure-2.9.2/cmake_support/substitute.cmake
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f scripts/CMakeFiles/subst_dng.dir/build.make scripts/CMakeFiles/subst_dng.dir/build
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/openstructure-2.9.2/scripts/ost.in -DOUT_FILE=ost -DBUILD_TYPE=Release -DPython_EXECUTABLE=/usr/bin/python3 -DPython_VERSION=3.13.2 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.13/dist-packages/ -P /build/reproducible-path/openstructure-2.9.2/cmake_support/substitute.cmake
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/openstructure-2.9.2/scripts/dng.in -DOUT_FILE=dng -DBUILD_TYPE=Release -DPython_EXECUTABLE=/usr/bin/python3 -DPython_VERSION=3.13.2 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.13/dist-packages/ -P /build/reproducible-path/openstructure-2.9.2/cmake_support/substitute.cmake
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/bin
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/openstructure/libexec
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/openstructure/libexec
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/tests
[ 0%] Built target subst_ost_startup.py
+[ 0%] Built target subst_ost
[ 0%] Built target subst_ost_config
[ 0%] Built target subst_dng
-[ 0%] Built target subst_ost
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/tests
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
[ 0%] Built target create_stage
make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/depend
make -f modules/geom/src/CMakeFiles/ost_geom_headers.dir/build.make modules/geom/src/CMakeFiles/ost_geom_headers.dir/depend
make -f modules/config/CMakeFiles/ost_config_headers.dir/build.make modules/config/CMakeFiles/ost_config_headers.dir/depend
make -f modules/base/src/CMakeFiles/ost_base_headers.dir/build.make modules/base/src/CMakeFiles/ost_base_headers.dir/depend
-make -f modules/info/src/CMakeFiles/ost_info_headers.dir/build.make modules/info/src/CMakeFiles/ost_info_headers.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/DependInfo.cmake "--color="
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/depend
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/geom/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src/CMakeFiles/ost_geom_headers.dir/DependInfo.cmake "--color="
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/depend
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/config /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/config /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/config/CMakeFiles/ost_config_headers.dir/DependInfo.cmake "--color="
-make -f modules/conop/src/CMakeFiles/ost_conop_headers.dir/build.make modules/conop/src/CMakeFiles/ost_conop_headers.dir/depend
+make -f modules/info/src/CMakeFiles/ost_info_headers.dir/build.make modules/info/src/CMakeFiles/ost_info_headers.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src/CMakeFiles/ost_base_headers.dir/DependInfo.cmake "--color="
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/config /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/config /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/config/CMakeFiles/ost_config_headers.dir/DependInfo.cmake "--color="
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/depend
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/info/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src/CMakeFiles/ost_info_headers.dir/DependInfo.cmake "--color="
-make -f modules/db/src/CMakeFiles/ost_db_headers.dir/build.make modules/db/src/CMakeFiles/ost_db_headers.dir/depend
+make -f modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/DependInfo.cmake "--color="
-make -f modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/depend
+make -f modules/conop/src/CMakeFiles/ost_conop_headers.dir/build.make modules/conop/src/CMakeFiles/ost_conop_headers.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/DependInfo.cmake "--color="
-make -f modules/img/base/src/CMakeFiles/ost_img_headers.dir/build.make modules/img/base/src/CMakeFiles/ost_img_headers.dir/depend
-make -f modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/depend
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/db/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/src/CMakeFiles/ost_db_headers.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/conop/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src/CMakeFiles/ost_conop_headers.dir/DependInfo.cmake "--color="
-make -f modules/gui/src/CMakeFiles/ost_gui_headers.dir/build.make modules/gui/src/CMakeFiles/ost_gui_headers.dir/depend
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/gfx/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/DependInfo.cmake "--color="
-make -f modules/io/src/CMakeFiles/ost_io_headers.dir/build.make modules/io/src/CMakeFiles/ost_io_headers.dir/depend
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/img/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src/CMakeFiles/ost_img_headers.dir/DependInfo.cmake "--color="
-make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/depend
-make -f modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/depend
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/DependInfo.cmake "--color="
+make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/geom/src/CMakeFiles/ost_geom_headers.dir/build.make modules/geom/src/CMakeFiles/ost_geom_headers.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/io/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src/CMakeFiles/ost_io_headers.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./alignment_opts.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./alignment_opts.hh
+make -f modules/config/CMakeFiles/ost_config_headers.dir/build.make modules/config/CMakeFiles/ost_config_headers.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/gui/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/CMakeFiles/ost_gui_headers.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/export_helper/vector.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/export_helper/vector.hh
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/db/src/CMakeFiles/ost_db_headers.dir/build.make modules/db/src/CMakeFiles/ost_db_headers.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/config/./base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./base.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/bindings/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/DependInfo.cmake "--color="
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/db/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/src/CMakeFiles/ost_db_headers.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/info/src/CMakeFiles/ost_info_headers.dir/build.make modules/info/src/CMakeFiles/ost_info_headers.dir/build
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/pointer_iterator.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/pointer_iterator.hh
make -f modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/img/base/src/CMakeFiles/ost_img_headers.dir/build.make modules/img/base/src/CMakeFiles/ost_img_headers.dir/build
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/base/src/CMakeFiles/ost_base_headers.dir/build.make modules/base/src/CMakeFiles/ost_base_headers.dir/build
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./info.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./info.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/config/./config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./config.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/base/src/CMakeFiles/ost_base_headers.dir/build.make modules/base/src/CMakeFiles/ost_base_headers.dir/build
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/impl/sequence_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/impl/sequence_impl.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./def.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./def.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build
-make -f modules/db/src/CMakeFiles/ost_db_headers.dir/build.make modules/db/src/CMakeFiles/ost_db_headers.dir/build
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./clip_alignment.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./clip_alignment.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/info/src/CMakeFiles/ost_info_headers.dir/build.make modules/info/src/CMakeFiles/ost_info_headers.dir/build
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/export_helper/generic_property_def.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/export_helper/generic_property_def.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/raster_image/raster_image.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/raster_image/raster_image.hh
-make -f modules/io/src/CMakeFiles/ost_io_headers.dir/build.make modules/io/src/CMakeFiles/ost_io_headers.dir/build
-make -f modules/geom/src/CMakeFiles/ost_geom_headers.dir/build.make modules/geom/src/CMakeFiles/ost_geom_headers.dir/build
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./anisotropic.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./anisotropic.hh
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/db/src/./sqlite_wrap.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/db/./sqlite_wrap.hh
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build
-make -f modules/config/CMakeFiles/ost_config_headers.dir/build.make modules/config/CMakeFiles/ost_config_headers.dir/build
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/export_helper/vector.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/export_helper/vector.hh
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/chemdict_parser.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/chemdict_parser.hh
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./alignment_opts.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./alignment_opts.hh
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/config/./base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./base.hh
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/pointer_iterator.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/pointer_iterator.hh
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/gui/src/CMakeFiles/ost_gui_headers.dir/build.make modules/gui/src/CMakeFiles/ost_gui_headers.dir/build
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./info.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./info.hh
make -f modules/conop/src/CMakeFiles/ost_conop_headers.dir/build.make modules/conop/src/CMakeFiles/ost_conop_headers.dir/build
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/tool.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/tools/tool.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/atom_group.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/atom_group.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/config/./dllexport.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./dllexport.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/db/src/CMakeFiles/ost_db_headers.dir/build.make modules/db/src/CMakeFiles/ost_db_headers.dir/build
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/conop/src/./conop.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/conop/./conop.hh
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/map_iso_gen.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen.hh
-make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./svd_superpose.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./svd_superpose.hh
+make -f modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/depend
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/db/src/./sqlite_wrap.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/db/./sqlite_wrap.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/bindings/src/./wrap_tmalign.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/bindings/./wrap_tmalign.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/impl/sequence_impl_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/impl/sequence_impl_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./info_error.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./info_error.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/gfx/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./exc.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./exc.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/export_helper/pair_to_tuple_conv.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/export_helper/pair_to_tuple_conv.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./def.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./def.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/star_parser.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/star_parser.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/config/./config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./config.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./clip_alignment.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./clip_alignment.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/atom_group.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/atom_group.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./auto_correlate.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./auto_correlate.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/dispatch.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/dispatch.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./info_error.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./info_error.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/atom_prop.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/atom_prop.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/config/./version.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./version.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./conservation.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./conservation.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/db/src/./sqlite_conv.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/db/./sqlite_conv.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/tool_option_group.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/tools/tool_option_group.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/map_iso_gen_s.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen_s.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/impl/sequence_impl_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/impl/sequence_impl_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./info_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./info_impl.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/atom_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/atom_impl.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/conop/src/./processor.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/conop/./processor.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./module_config.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./exc.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./exc.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./geom.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./geom.hh
+make -f modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/export_helper/vec_to_list_conv.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/export_helper/vec_to_list_conv.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/impl/sequence_list_impl_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/impl/sequence_list_impl_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/atom_prop.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/atom_prop.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./info_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./info_impl.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/star_writer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/star_writer.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/config/./dllexport.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./dllexport.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./conservation.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./conservation.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/db/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/db/./module_config.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./clear.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./clear.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/tool_options.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/tools/tool_options.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/map_iso_gen_s.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen_s.hh
-[ 0%] Built target ost_bindings_headers
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/conop/src/./amino_acids.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/conop/./amino_acids.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./geom.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./geom.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/impl/sequence_list_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/impl/sequence_list_impl.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./sec_structure_segments.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./sec_structure_segments.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/atom_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/atom_impl.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/test_utils/compare_files.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/test_utils/compare_files.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/config/./version.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./version.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/mmcif_reader.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/mmcif_reader.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/db/src/./linear_indexer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/db/./linear_indexer.hh
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/map_iso_gen.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/impl/sequence_list_impl_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/impl/sequence_list_impl_fw.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./info_impl_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./info_impl_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./contact_prediction_score.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./contact_prediction_score.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./clip_min_max.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./clip_min_max.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/map_iso_spec.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/map_iso_spec.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/tool_bar.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/tools/tool_bar.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/conop/src/./diag.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/conop/./diag.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/impl/sequence_list_iterator.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/impl/sequence_list_iterator.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/atom_impl_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/atom_impl_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./contact_prediction_score.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./contact_prediction_score.hh
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/test_utils/compare_files.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/test_utils/compare_files.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./mat.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./mat.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./contact_weight_matrix.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./contact_weight_matrix.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./local_dist_diff_test.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./local_dist_diff_test.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/mmcif_info.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/mmcif_info.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/db/src/./binary_container.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/db/./binary_container.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/map_iso_gen_s.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen_s.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/conop/src/./amino_acids.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/conop/./amino_acids.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./info_handle.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./info_handle.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/db/src/./linear_indexer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/db/./linear_indexer.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./contact_weight_matrix.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./contact_weight_matrix.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/impl/sequence_list_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/impl/sequence_list_impl.hh
+[ 0%] Built target ost_config_headers
+make -f modules/img/base/src/CMakeFiles/ost_img_headers.dir/build.make modules/img/base/src/CMakeFiles/ost_img_headers.dir/depend
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./mat2.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./mat2.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/chain_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/chain_impl.hh
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/img/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src/CMakeFiles/ost_img_headers.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./generic_property.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./generic_property.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state_base.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./conjugate.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./conjugate.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/chain_impl_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/chain_impl_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./info_group.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./info_group.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/map_iso_gen_s.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen_s.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/impl/sequence_list_iterator.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/impl/sequence_list_iterator.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/conop/src/./diag.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/conop/./diag.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./distance_map.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./distance_map.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./mat3.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./mat3.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/db/src/./binary_container.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/db/./binary_container.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/conop/src/./model_check.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/conop/./model_check.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/selection_tool.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/tools/selection_tool.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/map_octree.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/map_octree.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./distance_test_common.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./distance_test_common.hh
+make -f modules/img/base/src/CMakeFiles/ost_img_headers.dir/build.make modules/img/base/src/CMakeFiles/ost_img_headers.dir/build
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/map_iso_spec.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/map_iso_spec.hh
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/raster_image/raster_image.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/raster_image/raster_image.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/connector_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/connector_impl.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./info_item.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./info_item.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/./sequence_list.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/./sequence_list.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/chain_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/chain_impl.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./distance_map.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./distance_map.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./mat2.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./mat2.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./info_group.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./info_group.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/mmcif_writer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/mmcif_writer.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_base_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state_base_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./mat4.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./mat4.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./integrity_error.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./integrity_error.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/connector_impl_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/connector_impl_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./entropy.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./entropy.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/conop/src/./model_check.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/conop/./model_check.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/map_octree.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/map_octree.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./vec.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./vec.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./info_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./info_fw.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/db/src/./extract_data_helper.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/db/./extract_data_helper.hh
-[ 0%] Built target ost_config_headers
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/conop/src/./heuristic.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/conop/./heuristic.hh
-make -f modules/config/CMakeFiles/ost_config.dir/build.make modules/config/CMakeFiles/ost_config.dir/depend
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/measure_tool.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/tools/measure_tool.hh
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/config /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/config /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/config/CMakeFiles/ost_config.dir/DependInfo.cmake "--color="
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./convolute.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./convolute.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/octree_isocont.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/octree_isocont.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./distance_rmsd_test.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./distance_rmsd_test.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/dispatch.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/dispatch.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/./sequence_handle.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/./sequence_handle.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/io_profile.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/io_profile.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/dihedral.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/dihedral.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/conop/src/./heuristic.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/conop/./heuristic.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./global_align.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./global_align.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./invalid_handle.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./invalid_handle.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./mat3.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./mat3.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/chain_impl_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/chain_impl_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/octree_isocont.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/octree_isocont.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./vec2.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./vec2.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./module_config.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/entity_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/entity_impl.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/conop/src/./compound.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/conop/./compound.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/./alignment_handle.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/./alignment_handle.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./entropy.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./entropy.hh
-make -f modules/config/CMakeFiles/ost_config.dir/build.make modules/config/CMakeFiles/ost_config.dir/build
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./info_item.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./info_item.hh
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[4]: Nothing to be done for 'modules/config/CMakeFiles/ost_config.dir/build'.
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./correlate.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./correlate.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_def.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state_def.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./superpose_frames.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./superpose_frames.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/tool_option.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/tools/tool_option.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/cartoon_renderer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/cartoon_renderer.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./ptr_observer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./ptr_observer.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/./alignment_handle.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/./alignment_handle.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/connector_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/connector_impl.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./mat4.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./mat4.hh
-[ 0%] Built target ost_config
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/dcd_io.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/dcd_io.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./global_align.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./global_align.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./cross_correlate.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./cross_correlate.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./info_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./info_fw.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/conop/src/./compound_lib.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/conop/./compound_lib.hh
-[ 0%] Built target ost_db_headers
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./filter_clashes.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./filter_clashes.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_factory.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state_factory.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/tool_manager.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/tools/tool_manager.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./log.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./log.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/connector_impl_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/connector_impl_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./vec.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./vec.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/entity_impl_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/entity_impl_fw.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./ins_del.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./ins_del.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/custom_renderer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/custom_renderer.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_crd_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/entity_io_crd_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./module_config.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./density_slice.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./density_slice.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./vec3.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./vec3.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./info_path.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./info_path.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./ptr_observer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./ptr_observer.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/./module_config.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./construct_cbeta.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./construct_cbeta.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_frequency_domain.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state_frequency_domain.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/tool_options_widget.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/tools/tool_options_widget.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/custom_renderer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/custom_renderer.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/fragment_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/fragment_impl.hh
+[ 0%] Built target ost_db_headers
+make -f modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/depend
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./log.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./log.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/conop/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/conop/./module_config.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./vec2.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./vec2.hh
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./info_set.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./info_set.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state_base.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./vec4.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./vec4.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./local_align.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./local_align.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./log_sink.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./log_sink.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/cpk_renderer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/cpk_renderer.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/dihedral.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/dihedral.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_pqr_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/entity_io_pqr_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./dft.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./dft.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./info_path.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./info_path.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./clash_score.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./clash_score.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_half_frequency_domain.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state_half_frequency_domain.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/./sequence_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/./sequence_op.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/manipulator.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/tools/manipulator.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/conop/src/./rule_based.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/conop/./rule_based.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./vec3.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./vec3.hh
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/cpk_renderer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/cpk_renderer.hh
+make -f modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/fragment_impl_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/fragment_impl_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./info_visitor.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./info_visitor.hh
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./anisotropic.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./anisotropic.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./vecmat_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./vecmat_op.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./merge_pairwise_alignments.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./merge_pairwise_alignments.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/entity_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/entity_impl.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_base_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state_base_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./log_sink.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./log_sink.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/debug_renderer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/debug_renderer.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./info_set.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./info_set.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./profile.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./profile.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state_impl.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./fft.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./fft.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_mae_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/entity_io_mae_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./trajectory_analysis.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./trajectory_analysis.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/conop/src/./minimal_compound_lib.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/conop/./minimal_compound_lib.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/./aligned_region.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/./aligned_region.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./vec4.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./vec4.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/tool_options_win.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/tools/tool_options_win.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/conop/src/./minimal_compound_lib.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/conop/./minimal_compound_lib.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./info_verbose_visitor.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./info_verbose_visitor.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./module_config.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./vecmat2_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./vecmat2_op.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/simple_renderer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/simple_renderer.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./info_visitor.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./info_visitor.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_spatial_domain.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state_spatial_domain.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/entity_impl_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/entity_impl_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_mmcif_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/entity_io_mmcif_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./structure_analysis.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./structure_analysis.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./fftw_helper.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./fftw_helper.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./dyn_cast.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./dyn_cast.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./vecmat_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./vecmat_op.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/conop/src/./compound_lib_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/conop/./compound_lib_base.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/mouse_event.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/query_ast.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/query_ast.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./pair_subst_weight_matrix.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./pair_subst_weight_matrix.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/./aligned_column.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/./aligned_column.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./info_verbose_visitor.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./info_verbose_visitor.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_visitor.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state_visitor.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/fragment_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/fragment_impl.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_def.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state_def.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./auto_correlate.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./auto_correlate.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./item_type.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./item_type.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/conop/src/./compound_lib_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/conop/./compound_lib_base.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./profile.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./profile.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./semiglobal_align.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./semiglobal_align.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/./aligned_column_iterator.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/./aligned_column_iterator.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/sline_renderer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/sline_renderer.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./pair_subst_weight_matrix.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./pair_subst_weight_matrix.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/entity_io_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./fill.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./fill.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./consistency_checks.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./consistency_checks.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./stdint.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./stdint.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./vecmat2_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./vecmat2_op.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/map_tool.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/tools/map_tool.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/query_ast_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/query_ast_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./clear.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./clear.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./sequence_identity.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./sequence_identity.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/conop/src/./ring_finder.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/conop/./ring_finder.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_algorithm.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state_algorithm.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/./aligned_column_iterator.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/./aligned_column_iterator.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./semiglobal_align.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./semiglobal_align.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./item_type.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./item_type.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/fragment_impl_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/fragment_impl_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/trace_renderer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/trace_renderer.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/pdb_reader.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/pdb_reader.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./filter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./filter.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./stdint_msc.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./stdint_msc.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./pdbize.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./pdbize.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./vecmat3_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./vecmat3_op.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/align_properties_painter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/align_properties_painter.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_visitor_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state_visitor_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_factory.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state_factory.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/./invalid_sequence.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/./invalid_sequence.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./dyn_cast.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./dyn_cast.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./sequence_similarity.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./sequence_similarity.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./geom_info_conversion.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./geom_info_conversion.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./sequence_identity.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./sequence_identity.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/query_ast.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/query_ast.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./range.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./range.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./adjacency_bitmap.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./adjacency_bitmap.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_pdb_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/entity_io_pdb_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/line_trace_renderer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/line_trace_renderer.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./fourier_filters.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./fourier_filters.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/trace_renderer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/trace_renderer.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/query_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/query_impl.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./clip_min_max.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./clip_min_max.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./vecmat4_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./vecmat4_op.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/base_row.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/base_row.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/index.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/index.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./item_type_cast.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./item_type_cast.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./sequence_similarity.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./sequence_similarity.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/./views_from_sequences.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/./views_from_sequences.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/query_ast_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/query_ast_fw.hh
-[ 0%] Built target ost_conop_headers
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./module_config.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/backbone_trace.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/backbone_trace.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./gaussian_gradient_magnitude.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./gaussian_gradient_magnitude.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./consistency_checks.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./consistency_checks.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/pdb_writer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/pdb_writer.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/background_painter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/background_painter.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/type_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/type_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./stdint.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./stdint.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_frequency_domain.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state_frequency_domain.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./subst_weight_matrix.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./subst_weight_matrix.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/info/src/./item_type_cast.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/info/./item_type_cast.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./circular_iterator.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./circular_iterator.hh
+[ 0%] Built target ost_conop_headers
+make -f modules/gui/src/CMakeFiles/ost_gui_headers.dir/build.make modules/gui/src/CMakeFiles/ost_gui_headers.dir/depend
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/line_trace_renderer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/line_trace_renderer.hh
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/gui/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/CMakeFiles/ost_gui_headers.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./stdint_msc.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./stdint_msc.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./conjugate.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./conjugate.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/query_impl_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/query_impl_fw.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src/./profile_handle.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/./profile_handle.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/query_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/query_impl.hh
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./subst_weight_matrix.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./subst_weight_matrix.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/entity_detail.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/entity_detail.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./units.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./units.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./gaussian.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./gaussian.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./contact_overlap.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./contact_overlap.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_sdf_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/entity_io_sdf_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/conservation_painter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/conservation_painter.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/value_holder.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/value_holder.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_half_frequency_domain.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state_half_frequency_domain.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./constants.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./constants.hh
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 0%] Built target ost_info_headers
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/query_impl_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/query_impl_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./message.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./message.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/entity_renderer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./gaussian_laplacian.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./gaussian_laplacian.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./domain_find.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./domain_find.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./variance_map.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./variance_map.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/sdf_reader.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/sdf_reader.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/painter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/painter.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./composite.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./composite.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./algorithm.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./algorithm.hh
-[ 0%] Built target ost_seq_headers
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/residue_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/residue_impl.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/trace_renderer_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/trace_renderer_base.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./platform.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./platform.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./highest_peak_search_3d.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./highest_peak_search_3d.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./similarity_matrix.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./similarity_matrix.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/secstr_row.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/secstr_row.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/sdf_writer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/sdf_writer.hh
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/backbone_trace.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/backbone_trace.hh
+make -f modules/gui/src/CMakeFiles/ost_gui_headers.dir/build.make modules/gui/src/CMakeFiles/ost_gui_headers.dir/build
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./range.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./range.hh
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/tool.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/tools/tool.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./convolute.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./convolute.hh
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./data/default_contact_weight_matrix.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./default_contact_weight_matrix.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./circle_mask.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./circle_mask.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./composite2.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./composite2.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/residue_impl_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/residue_impl_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/connect_renderer_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/connect_renderer_base.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./string_ref.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./string_ref.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./histogram.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./histogram.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./accessibility.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./accessibility.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/save_entity.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/save_entity.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/seq_secstr_painter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_secstr_painter.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./composite3.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./composite3.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./composite_mask.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./composite_mask.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./composite.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./composite.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state_impl.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./module_config.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./data/default_pair_subst_weight_matrix.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./default_pair_subst_weight_matrix.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/entity_detail.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/entity_detail.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/residue_impl_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/residue_impl_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./correlate.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./correlate.hh
+[ 0%] Built target ost_seq_headers
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./composite2.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./composite2.hh
+[ 0%] Built target ost_info_headers
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/tool_option_group.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/tools/tool_option_group.hh
+make -f modules/io/src/CMakeFiles/ost_io_headers.dir/build.make modules/io/src/CMakeFiles/ost_io_headers.dir/depend
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/surface_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/surface_impl.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./pod_vector.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./pod_vector.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./line_iterator.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./line_iterator.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/mapped_property.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/mapped_property.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./sec_struct.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./sec_struct.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/seq_selection_painter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_selection_painter.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./composite_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./composite_op.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/load_entity.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/load_entity.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./data_algorithm.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./data_algorithm.hh
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/depend
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_spatial_domain.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state_spatial_domain.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/io/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src/CMakeFiles/ost_io_headers.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/entity_renderer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./units.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./units.hh
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/surface_impl_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/surface_impl_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./fixed_string.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./fixed_string.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./local_sigma_threshold.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./local_sigma_threshold.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/entity_renderer_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/entity_renderer_fw.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./hmm_pseudo_counts.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./hmm_pseudo_counts.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./nonstandard.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./nonstandard.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/seq_text_painter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_text_painter.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./composite2_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./composite2_op.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/surface_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/surface_io_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./data_observer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./data_observer.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./composite3.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./composite3.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./cross_correlate.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./cross_correlate.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/tool_options.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/tools/tool_options.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/trace_renderer_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/trace_renderer_base.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_visitor.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state_visitor.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./message.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./message.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/connect_renderer_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/connect_renderer_base.hh
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/io/src/CMakeFiles/ost_io_headers.dir/build.make modules/io/src/CMakeFiles/ost_io_headers.dir/build
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./composite_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./composite_op.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/torsion_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/torsion_impl.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./mask_image.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./mask_image.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/tabulated_trig.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/tabulated_trig.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./tri_matrix.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./tri_matrix.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./hmm_score.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./hmm_score.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./molck.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./molck.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/sequence_delegate.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_delegate.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/load_surface.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/load_surface.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./data_types.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./data_types.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./composite3_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./composite3_op.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/torsion_impl_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/torsion_impl_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./boost_filesystem_helper.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./boost_filesystem_helper.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/tool_bar.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/tools/tool_bar.hh
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/chemdict_parser.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/chemdict_parser.hh
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./density_slice.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./density_slice.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/mapped_property.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/mapped_property.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./platform.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./platform.hh
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./svd_superpose.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./svd_superpose.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_algorithm.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state_algorithm.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./composite2_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./composite2_op.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/entity_renderer_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/entity_renderer_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./string_ref.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./string_ref.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src/./wrap_parasail.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/seq/alg/./wrap_parasail.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./negate.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./negate.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/fast_spheres.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/fast_spheres.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./find_membrane.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./find_membrane.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/sequence_model.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_model.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/surface_io_msms_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/surface_io_msms_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./aligned_cuboid.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./aligned_cuboid.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./data.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./data.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/impl/torsion_impl_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/impl/torsion_impl_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/selection_tool.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/tools/selection_tool.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/star_parser.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/star_parser.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./module_config.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./pod_vector.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./pod_vector.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./dft.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./dft.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./composite3_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./composite3_op.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/image_state_visitor_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/image_state_visitor_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/tabulated_trig.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/tabulated_trig.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./atom_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./atom_base.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./normalizer_factory.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./normalizer_factory.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./paged_array.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./paged_array.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/render_options/render_options.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/render_options/render_options.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./entity_to_density.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./entity_to_density.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/sequence_row.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_row.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/pdb_str.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/pdb_str.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./vec_mat_predicates.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./vec_mat_predicates.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./debug.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./debug.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/star_writer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/star_writer.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./sec_structure_segments.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./sec_structure_segments.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/measure_tool.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/tools/measure_tool.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./aligned_cuboid.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./aligned_cuboid.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/index.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/index.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./fixed_string.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./fixed_string.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./fft.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./fft.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/impl/fast_spheres.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/impl/fast_spheres.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./atom_handle.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./atom_handle.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./vec_mat_predicates.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./vec_mat_predicates.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/mmcif_reader.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/mmcif_reader.hh
[ 0%] Built target ost_seq_alg_headers
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./norm.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./norm.hh
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/render_options/line_render_options.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/render_options/line_render_options.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./biounit.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./biounit.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/sequence_search_bar.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_search_bar.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./quat.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./quat.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/sdf_str.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/sdf_str.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./dllexport.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./dllexport.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./local_dist_diff_test.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./local_dist_diff_test.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/type_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/type_fw.hh
+make -f modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/depend
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/render_options/render_options.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/render_options/render_options.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./fftw_helper.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./fftw_helper.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./tri_matrix.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./tri_matrix.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/tool_option.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/tools/tool_option.hh
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/bindings/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./atom_view.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./atom_view.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./normalizer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./normalizer.hh
-[ 0%] Built target ost_base_headers
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./gdt.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./gdt.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./quat.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./quat.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/mmcif_info.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/mmcif_info.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/image_state/value_holder.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/image_state/value_holder.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/mmcif_writer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/mmcif_writer.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/render_options/line_render_options.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/render_options/line_render_options.hh
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./fill.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./fill.hh
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/bindings/src/./wrap_tmalign.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/bindings/./wrap_tmalign.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/tool_manager.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/tools/tool_manager.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./bond_handle.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./bond_handle.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./distance_test_common.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./distance_test_common.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/io_profile.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/io_profile.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./boost_filesystem_helper.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./boost_filesystem_helper.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./filter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./filter.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./algorithm.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./algorithm.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/render_options/custom_render_options.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/render_options/custom_render_options.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/sequence_table_view.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_table_view.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./transform.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./transform.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/mmcif_str.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/mmcif_str.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./extent_iterator.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./extent_iterator.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./bond_handle.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./bond_handle.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./norm_linear.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./norm_linear.hh
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/sequence_viewer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_viewer.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/dcd_io.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/dcd_io.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./distance_rmsd_test.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./distance_rmsd_test.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./bond_table.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./bond_table.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/base/src/./paged_array.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/./paged_array.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/render_options/cpk_render_options.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/render_options/cpk_render_options.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./point_cloud.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./point_cloud.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./extent_mask.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./extent_mask.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/stereochemical_params_reader.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/stereochemical_params_reader.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./bond_table.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./bond_table.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./norm_log.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./norm_log.hh
-[ 0%] Built target ost_mol_alg_headers
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/tick_painter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/tick_painter.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/render_options/simple_render_options.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/render_options/simple_render_options.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./module_config.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/omf.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/omf.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./extent.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./extent.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./circle_mask.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./circle_mask.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./fourier_filters.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./fourier_filters.hh
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./chain_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./chain_base.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/title_row.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/title_row.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_crd_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/entity_io_crd_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./superpose_frames.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./superpose_frames.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/render_options/sline_render_options.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/render_options/sline_render_options.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./norm_od.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./norm_od.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./composite_mask.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./composite_mask.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/tool_options_widget.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/tools/tool_options_widget.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./gaussian_gradient_magnitude.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./gaussian_gradient_magnitude.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_pqr_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/entity_io_pqr_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/geom/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/geom/./module_config.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/load_map.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/load_map.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./image_factory.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./image_factory.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./chain_handle.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./chain_handle.hh
-[ 0%] Built target ost_geom_headers
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/alignment_view_object.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/alignment_view_object.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/render_options/line_trace_render_options.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/render_options/line_trace_render_options.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./power_spectrum.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./power_spectrum.hh
-make -f modules/geom/src/CMakeFiles/ost_geom.dir/build.make modules/geom/src/CMakeFiles/ost_geom.dir/depend
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_df3_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_df3_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./chain_handle.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./chain_handle.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./data_algorithm.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./data_algorithm.hh
+[ 0%] Built target ost_bindings_headers
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/manipulator.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/tools/manipulator.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./gaussian.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./gaussian.hh
+make -f modules/config/CMakeFiles/ost_config.dir/build.make modules/config/CMakeFiles/ost_config.dir/depend
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_mae_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/entity_io_mae_handler.hh
+[ 0%] Built target ost_base_headers
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./filter_clashes.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./filter_clashes.hh
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/geom/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src/CMakeFiles/ost_geom.dir/DependInfo.cmake "--color="
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./image_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./image_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/config /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/config /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/config/CMakeFiles/ost_config.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./chain_view.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./chain_view.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/base_view_object.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/base_view_object.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./data_observer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./data_observer.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_mmcif_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/entity_io_mmcif_handler.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/render_options/cartoon_render_options.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/render_options/cartoon_render_options.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./randomize.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./randomize.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/image_format.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/image_format.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./image_handle_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./image_handle_fw.hh
+[ 0%] Built target ost_geom_headers
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./chain_type.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./chain_type.hh
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/config/CMakeFiles/ost_config.dir/build.make modules/config/CMakeFiles/ost_config.dir/build
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./gaussian_laplacian.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./gaussian_laplacian.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./construct_cbeta.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./construct_cbeta.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/entity_io_handler.hh
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make[4]: Nothing to be done for 'modules/config/CMakeFiles/ost_config.dir/build'.
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/tool_options_win.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/tools/tool_options_win.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./data_types.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./data_types.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/render_options/trace_render_options.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/render_options/trace_render_options.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./smooth_mask_image.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./smooth_mask_image.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/sequence_view_object.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_view_object.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_dx_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_dx_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./image_handle.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./image_handle.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./chem_class.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./chem_class.hh
+[ 0%] Built target ost_config
+make -f modules/geom/src/CMakeFiles/ost_geom.dir/build.make modules/geom/src/CMakeFiles/ost_geom.dir/depend
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./highest_peak_search_3d.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./highest_peak_search_3d.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/pdb_reader.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/pdb_reader.hh
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/geom/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/src/CMakeFiles/ost_geom.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/mouse_event.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color_ops/color_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/color_ops/color_op.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./stat.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./stat.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/main_thread_runner.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/main_thread_runner.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_spi_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_spi_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./image_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./image_impl.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./data.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./data.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_pdb_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/entity_io_pdb_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./clash_score.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./clash_score.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./chem_type.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./chem_type.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./stat_accumulator.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./stat_accumulator.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./histogram.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./histogram.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/tools/map_tool.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/tools/map_tool.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color_ops/by_element_color_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/color_ops/by_element_color_op.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_situs_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_situs_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/output_redirector.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./image_list.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./image_list.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./debug.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./debug.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/pdb_writer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/pdb_writer.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./coord_group.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./coord_group.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./line_iterator.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./line_iterator.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./trajectory_analysis.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./trajectory_analysis.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./dllexport.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./dllexport.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color_ops/by_chain_color_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/color_ops/by_chain_color_op.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./stat_min_max.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./stat_min_max.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/completer_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/completer_base.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./image_state_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./image_state_fw.hh
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/geom/src/CMakeFiles/ost_geom.dir/build.make modules/geom/src/CMakeFiles/ost_geom.dir/build
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/align_properties_painter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/align_properties_painter.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/entity_io_sdf_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/entity_io_sdf_handler.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./coord_source.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./coord_source.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./local_sigma_threshold.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./local_sigma_threshold.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./extent_iterator.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./extent_iterator.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color_ops/uniform_color_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/color_ops/uniform_color_op.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_mrc_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_mrc_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/dir_model.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/dir_model.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./threshold.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./threshold.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./image_state.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./image_state.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./structure_analysis.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./structure_analysis.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/base_row.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/base_row.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./in_mem_coord_source.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./in_mem_coord_source.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/sdf_reader.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/sdf_reader.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color_ops/gradient_color_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/color_ops/gradient_color_op.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_dat_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_dat_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/gutter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/gutter.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./transcendentals.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./transcendentals.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./image.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./image.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_ipl_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_ipl_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./mask_image.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./mask_image.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./extent_mask.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./extent_mask.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./consistency_checks.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./consistency_checks.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/background_painter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/background_painter.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/sdf_writer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/sdf_writer.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color_ops/entity_view_color_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/color_ops/entity_view_color_op.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/path_completer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/path_completer.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./transform.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./transform.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./negate.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./negate.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./coord_frame.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./coord_frame.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./inverted_mask.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./inverted_mask.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_jpk_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_jpk_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/python_context_parser.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/python_context_parser.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./transform_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./transform_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color_ops/basic_gradient_color_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/color_ops/basic_gradient_color_op.hh
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/geom/src/CMakeFiles/ost_geom.dir/build.make modules/geom/src/CMakeFiles/ost_geom.dir/build
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/conservation_painter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/conservation_painter.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/save_entity.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/save_entity.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./pdbize.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./pdbize.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./editor_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./editor_base.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./map.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./map.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_nanoscope_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_nanoscope_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/python_completer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/python_completer.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./alg_transform.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./alg_transform.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./extent.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./extent.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color_ops/basic_gradient_color_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/color_ops/basic_gradient_color_op.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./normalizer_factory.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./normalizer_factory.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/painter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/painter.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./adjacency_bitmap.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./adjacency_bitmap.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./editor_type_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./editor_type_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./mask_base_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./mask_base_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/load_entity.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/load_entity.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color_ops/gradient_level_color_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/color_ops/gradient_level_color_op.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./image_factory.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./image_factory.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./norm.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./norm.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./consistency_checks.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./consistency_checks.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./mol.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./mol.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./image_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./image_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/secstr_row.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/secstr_row.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/surface_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/surface_io_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./normalizer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./normalizer.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./entity_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./entity_base.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color_ops/map_handle_color_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/color_ops/map_handle_color_op.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./image_handle_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./image_handle_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./norm_linear.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./norm_linear.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/seq_secstr_painter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_secstr_painter.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./contact_overlap.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./contact_overlap.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/load_surface.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/load_surface.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./render_pass.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./render_pass.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./entity_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./entity_base.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./image_handle.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./image_handle.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./norm_log.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./norm_log.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/surface_io_msms_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/surface_io_msms_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/seq_selection_painter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_selection_painter.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./domain_find.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./domain_find.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./entity_handle.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./entity_handle.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./image_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./image_impl.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/pdb_str.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/pdb_str.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./norm_od.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./norm_od.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./bitmap_io.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./bitmap_io.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make[4]: Nothing to be done for 'modules/geom/src/CMakeFiles/ost_geom.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_png_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_png_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/python_shell.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/python_shell.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./alg_mirror.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./alg_mirror.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./mol.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./mol.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./mask_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./mask_base.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/color_ops/map_handle_color_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/color_ops/map_handle_color_op.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./entity_observer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./entity_observer.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/seq_text_painter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_text_painter.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./similarity_matrix.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./similarity_matrix.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/sdf_str.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/sdf_str.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./image_list.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./image_list.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./power_spectrum.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./power_spectrum.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./collada_exporter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./collada_exporter.hh
[ 2%] Built target ost_geom
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./entity_observer_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./entity_observer_fw.hh
make -f modules/base/src/CMakeFiles/ost_base.dir/build.make modules/base/src/CMakeFiles/ost_base.dir/depend
-make -f modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make modules/geom/pymod/CMakeFiles/_ost_geom.dir/depend
-make -f modules/geom/tests/CMakeFiles/ost_geom_tests.dir/build.make modules/geom/tests/CMakeFiles/ost_geom_tests.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/src/CMakeFiles/ost_base.dir/DependInfo.cmake "--color="
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_dm3_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_dm3_handler.hh
+make -f modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make modules/geom/pymod/CMakeFiles/_ost_geom.dir/depend
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./accessibility.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./accessibility.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/geom/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/pymod/CMakeFiles/_ost_geom.dir/DependInfo.cmake "--color="
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/python_shell_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/python_shell_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./alg_shift.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./alg_shift.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./entity_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./entity_base.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/sequence_delegate.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_delegate.hh
+make -f modules/geom/tests/CMakeFiles/ost_geom_tests.dir/build.make modules/geom/tests/CMakeFiles/ost_geom_tests.dir/depend
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./image_state_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./image_state_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/mmcif_str.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/mmcif_str.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./randomize.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./randomize.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./entity_property_mapper.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./entity_property_mapper.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/geom/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/tests/CMakeFiles/ost_geom_tests.dir/DependInfo.cmake "--color="
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./render_pass.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./render_pass.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./mask_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./mask_op.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_tiff_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_tiff_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/python_shell_widget.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/python_shell_widget.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./discrete_shrink.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./discrete_shrink.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./entity_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./entity_base.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./color.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./color.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./sec_struct.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./sec_struct.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/stereochemical_params_reader.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/stereochemical_params_reader.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./entity_view.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./entity_view.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/sequence_model.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_model.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./image_state.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./image_state.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make -f modules/geom/tests/CMakeFiles/ost_geom_tests.dir/build.make modules/geom/tests/CMakeFiles/ost_geom_tests.dir/build
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./bitmap_io.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./bitmap_io.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./mask_visitor.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./mask_visitor.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./smooth_mask_image.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./smooth_mask_image.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/python_tokenizer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/python_tokenizer.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./entity_handle.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./entity_handle.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./transformation_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./transformation_base.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/tiff_util.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/tiff_util.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/mol/omf.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/mol/omf.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./entity.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./entity.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./nonstandard.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./nonstandard.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/sequence_row.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_row.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./entity_visitor.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./entity_visitor.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./entity_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./entity_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./image.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./image.hh
[ 2%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_composite3.cc.o
-[ 2%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_mat2.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./mask.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./mask.hh
-[ 2%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_composite2.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_composite3.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_composite3.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_composite3.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/tests/test_composite3.cc
-[ 2%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_transform.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./collada_exporter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./collada_exporter.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_composite2.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_composite2.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_composite2.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/tests/test_composite2.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_mat2.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_mat2.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_mat2.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/tests/test_mat2.cc
-[ 2%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_mat3.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_transform.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_transform.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_transform.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/tests/test_transform.cc
-[ 2%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_mat4.cc.o
-[ 2%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_op2.cc.o
-[ 3%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_op3.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_mat3.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_mat3.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_mat3.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/tests/test_mat3.cc
-[ 3%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_op4.cc.o
-[ 3%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_quat.cc.o
-[ 3%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_vec2.cc.o
-[ 3%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_vec3.cc.o
-[ 3%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_vec4.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_mat4.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_mat4.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_mat4.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/tests/test_mat4.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_op2.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_op2.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_op2.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/tests/test_op2.cc
-[ 3%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/tests.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_op3.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_op3.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_op3.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/tests/test_op3.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_op4.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_op4.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_op4.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/tests/test_op4.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_quat.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_quat.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_quat.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/tests/test_quat.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_vec2.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_vec2.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_vec2.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/tests/test_vec2.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_vec3.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_vec3.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_vec3.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/tests/test_vec3.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_vec4.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_vec4.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_vec4.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/tests/test_vec4.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/tests.cc.o -MF CMakeFiles/ost_geom_tests.dir/tests.cc.o.d -o CMakeFiles/ost_geom_tests.dir/tests.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/tests/tests.cc
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/load_map.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/load_map.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./stat.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./stat.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./molck.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./molck.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/sequence_search_bar.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_search_bar.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gl_helper.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gl_helper.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./inverted_mask.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./inverted_mask.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make -f modules/base/src/CMakeFiles/ost_base.dir/build.make modules/base/src/CMakeFiles/ost_base.dir/build
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./transformations.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./transformations.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./entity_observer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./entity_observer.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/python_syntax_highlighter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/python_syntax_highlighter.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./module_config.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./color.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./color.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/jpk_util.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/jpk_util.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./fractional_shift.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./fractional_shift.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/text_logger.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./entity.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./entity.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./entity_observer_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./entity_observer_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./stat_accumulator.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./stat_accumulator.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./entity_visitor_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./entity_visitor_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_df3_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_df3_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./find_membrane.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./find_membrane.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./stat_min_max.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./stat_min_max.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/sequence_table_view.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_table_view.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./map.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./map.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gfx.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gfx.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./handle_type_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./handle_type_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/image_format.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/image_format.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./mask_base_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./mask_base_fw.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make[4]: Nothing to be done for 'modules/base/src/CMakeFiles/ost_base.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/sequence_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/seq/sequence_io_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./normalizer_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./normalizer_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./entity_property_mapper.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./entity_property_mapper.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./entity_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./entity_fw.hh
-[ 4%] Built target ost_base
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/python_interpreter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./module_config.hh
-make -f modules/info/src/CMakeFiles/ost_info.dir/build.make modules/info/src/CMakeFiles/ost_info.dir/depend
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./normalizer_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./normalizer_impl.hh
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/info/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src/CMakeFiles/ost_info.dir/DependInfo.cmake "--color="
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/fasta_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/seq/fasta_io_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./null_data.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./null_data.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./entity_view.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./entity_view.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gl_helper.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gl_helper.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./polar.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./polar.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/python_interpreter_worker.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/pir_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/seq/pir_io_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./observable.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./observable.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./entity_visitor.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./entity_visitor.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gfx.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gfx.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/python_shell_text_document_layout.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/python_shell_text_document_layout.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./line_average.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./line_average.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/promod_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/seq/promod_io_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./rscrosscorr.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./rscrosscorr.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./entity_visitor_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./entity_visitor_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./paste_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./paste_impl.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./entity_to_density.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./entity_to_density.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gfx_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gfx_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/shell_history.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/shell_history.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/profile_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/seq/profile_io_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./handle_type_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./handle_type_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./peak.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./peak.hh
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/state_machine.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/state_machine.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./threshold.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./threshold.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./mask_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./mask_base.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/sequence_viewer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_viewer.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gfx_node.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gfx_node.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/hhm_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/seq/hhm_io_handler.hh
-[ 4%] Built target ost_img_alg_headers
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./ics_editor.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./ics_editor.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./phase.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./phase.hh
+[ 3%] Built target ost_base
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_dx_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_dx_handler.hh
+make -f modules/info/src/CMakeFiles/ost_info.dir/build.make modules/info/src/CMakeFiles/ost_info.dir/depend
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/tick_painter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/tick_painter.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./biounit.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./biounit.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./transcendentals.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./transcendentals.hh
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/info/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/src/CMakeFiles/ost_info.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./mask_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./mask_op.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gfx_node_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gfx_node_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/state.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/state.hh
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/info/src/CMakeFiles/ost_info.dir/build.make modules/info/src/CMakeFiles/ost_info.dir/build
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/pssm_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/seq/pssm_io_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./transform.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./transform.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_spi_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_spi_handler.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./not_connected_error.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./not_connected_error.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/transition.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/transition.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./physical_units.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./physical_units.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src/./gdt.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/alg/./gdt.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/title_row.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/title_row.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./mask_visitor.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./mask_visitor.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_situs_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_situs_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./transform_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./transform_fw.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gfx_node_visitor.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gfx_node_visitor.hh
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make modules/geom/pymod/CMakeFiles/_ost_geom.dir/build
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/clustal_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/seq/clustal_io_handler.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./property_id.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./property_id.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/transition_guard.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/transition_guard.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./pixel_sampling.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./pixel_sampling.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gfx_object_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gfx_object_base.hh
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[4]: Nothing to be done for 'modules/info/src/CMakeFiles/ost_info.dir/build'.
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_handler.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/load.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/seq/load.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/alignment_view_object.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/alignment_view_object.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_mrc_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_mrc_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./alg_transform.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./alg_transform.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./mask.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./mask.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gfx_object_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gfx_object_base.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_dat_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_dat_handler.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./query.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./query.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/button_bar.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/panels/button_bar.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./point_list.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./point_list.hh
-[ 5%] Built target ost_info
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_ipl_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_ipl_handler.hh
+[ 3%] Built target ost_mol_alg_headers
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./alg_mirror.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./alg_mirror.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_jpk_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_jpk_handler.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gfx_object.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gfx_object.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/save.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/seq/save.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./module_config.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/base_view_object.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/base_view_object.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./query_error.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./query_error.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./point.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./point.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/drop_box.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/panels/drop_box.hh
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[4]: Nothing to be done for 'modules/geom/pymod/CMakeFiles/_ost_geom.dir/build'.
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./binary_data_sink.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./binary_data_sink.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_nanoscope_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_nanoscope_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./alg_shift.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./alg_shift.hh
+[ 3%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_composite2.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_composite2.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_composite2.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_composite2.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/tests/test_composite2.cc
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gfx_object_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gfx_object_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./normalizer_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./normalizer_fw.hh
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make modules/geom/pymod/CMakeFiles/_ost_geom.dir/build
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./query_state.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./query_state.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./polygon_mask.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./polygon_mask.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/panel_bar.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/panels/panel_bar.hh
-[ 7%] Built target _ost_geom
-make -f modules/base/pymod/CMakeFiles/_ost_base.dir/build.make modules/base/pymod/CMakeFiles/_ost_base.dir/depend
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/base/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/pymod/CMakeFiles/_ost_base.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/sequence_viewer/sequence_view_object.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_view_object.hh
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/info/src/CMakeFiles/ost_info.dir/build.make modules/info/src/CMakeFiles/ost_info.dir/build
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_png_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_png_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./discrete_shrink.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./discrete_shrink.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gfx_prim.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gfx_prim.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./io_manager.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./io_manager.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./normalizer_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./normalizer_impl.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./residue_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./residue_base.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./progress.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./progress.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/panel_manager.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/panels/panel_manager.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_dm3_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_dm3_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/main_thread_runner.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/main_thread_runner.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./symmetry_node.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./symmetry_node.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./residue_handle.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./residue_handle.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./binary_data_source.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./binary_data_source.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./size.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./size.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/bottom_bar.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/panels/bottom_bar.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./transformation_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./transformation_base.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gfx_test_object.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gfx_test_object.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./module_config.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/output_redirector.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./residue_prop.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./residue_prop.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./container_serialization.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./container_serialization.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./spherical_mask.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./spherical_mask.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./glwin_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./glwin_base.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/button_box.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/panels/button_box.hh
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/base/pymod/CMakeFiles/_ost_base.dir/build.make modules/base/pymod/CMakeFiles/_ost_base.dir/build
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./null_data.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./null_data.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/map_io_tiff_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/map_io_tiff_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/completer_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/completer_base.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./residue_view.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./residue_view.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./swap_util.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./swap_util.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/event_button.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/panels/event_button.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./glwin_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./glwin_base.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/tiff_util.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/tiff_util.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./transformations.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./transformations.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./observable.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./observable.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/dir_model.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/dir_model.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./sec_structure.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./sec_structure.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./input.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./input.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./util.cc /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./util.cc
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./fractional_shift.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./fractional_shift.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/gutter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/gutter.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[4]: Nothing to be done for 'modules/base/pymod/CMakeFiles/_ost_base.dir/build'.
+make[4]: Nothing to be done for 'modules/info/src/CMakeFiles/ost_info.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/panel_widget_container.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/panels/panel_widget_container.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./sec_structure.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./sec_structure.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./io_utils.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./io_utils.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/img/jpk_util.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/img/jpk_util.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./prim_list.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./prim_list.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./util.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./util.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./io_exception.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./io_exception.hh
-[ 7%] Built target _ost_base
-make -f modules/info/pymod/CMakeFiles/_ost_info.dir/build.make modules/info/pymod/CMakeFiles/_ost_info.dir/depend
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/info/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/pymod/CMakeFiles/_ost_info.dir/DependInfo.cmake "--color="
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/panel_bar_widget_holder.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/panels/panel_bar_widget_holder.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./spatial_organizer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./spatial_organizer.hh
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make[4]: Nothing to be done for 'modules/geom/pymod/CMakeFiles/_ost_geom.dir/build'.
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./paste_impl.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./paste_impl.hh
+[ 4%] Built target ost_info
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./scene.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./scene.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./value_util.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./value_util.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./convert.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./convert.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./module_config.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./surface.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./surface.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/side_bar.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/panels/side_bar.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./peak.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./peak.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/path_completer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/path_completer.hh
+[ 4%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_mat2.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./polar.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./polar.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_mat2.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_mat2.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_mat2.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/tests/test_mat2.cc
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/sequence_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/seq/sequence_io_handler.hh
+[ 6%] Built target _ost_geom
+make -f modules/base/pymod/CMakeFiles/_ost_base.dir/build.make modules/base/pymod/CMakeFiles/_ost_base.dir/depend
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./selection.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./selection.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./vecmat.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./vecmat.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./phase.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./phase.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./surface_builder.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./surface_builder.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./converting_streams.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./converting_streams.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/splitter_panel_bar.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/panels/splitter_panel_bar.hh
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/info/pymod/CMakeFiles/_ost_info.dir/build.make modules/info/pymod/CMakeFiles/_ost_info.dir/build
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./surface.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./surface.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./mask_info_convert.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./mask_info_convert.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./builder.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./builder.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./formatted_line.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./formatted_line.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[4]: Nothing to be done for 'modules/info/pymod/CMakeFiles/_ost_info.dir/build'.
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./texture.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./texture.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/tabbed_panel_bar.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/panels/tabbed_panel_bar.hh
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/base/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/pymod/CMakeFiles/_ost_base.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./builder.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./builder.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./surface.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./surface.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./line_average.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./line_average.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./surface_handle.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./surface_handle.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/chemdict_parser.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./chemdict_parser.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./vertex_array.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./vertex_array.hh
-[ 7%] Built target _ost_info
-[ 7%] Built target ost_img_headers
-make -f modules/img/base/src/CMakeFiles/ost_img.dir/build.make modules/img/base/src/CMakeFiles/ost_img.dir/depend
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/context_menu.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/scene_win/context_menu.hh
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/img/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src/CMakeFiles/ost_img.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./texture.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./texture.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/fasta_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/seq/fasta_io_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/python_context_parser.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/python_context_parser.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./physical_units.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./physical_units.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./surface_prop.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./surface_prop.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/star_parser.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./star_parser.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./vertex_array_helper.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./vertex_array_helper.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/current_selection_node.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/scene_win/current_selection_node.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/pir_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/seq/pir_io_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./vertex_array.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./vertex_array.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/python_completer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/python_completer.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src/./rscrosscorr.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/alg/./rscrosscorr.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/promod_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/seq/promod_io_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./pixel_sampling.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./pixel_sampling.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./torsion_handle.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./torsion_handle.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./scene_observer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./scene_observer.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/star_writer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./star_writer.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/custom_part_node.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/scene_win/custom_part_node.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/profile_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/seq/profile_io_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/python_shell.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/python_shell.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./vertex_array_helper.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./vertex_array_helper.hh
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./transfer_connectivity.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./transfer_connectivity.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gl_include.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gl_include.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/mmcif_reader.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./mmcif_reader.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/entity_node.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/scene_win/entity_node.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/python_shell_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/python_shell_fw.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./query_view_wrapper.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./query_view_wrapper.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./glext_include.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./glext_include.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/entity_part_node.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/scene_win/entity_part_node.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/mmcif_info.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./mmcif_info.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/mmcif_writer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./mmcif_writer.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./point_list.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./point_list.hh
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/hhm_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/seq/hhm_io_handler.hh
+make -f modules/base/pymod/CMakeFiles/_ost_base.dir/build.make modules/base/pymod/CMakeFiles/_ost_base.dir/build
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/python_shell_widget.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/python_shell_widget.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./scene_observer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./scene_observer.hh
+[ 6%] Built target ost_img_alg_headers
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./view_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./view_op.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/gfx_scene_node.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/scene_win/gfx_scene_node.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./render_mode.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./render_mode.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/label_node.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/scene_win/label_node.hh
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make[4]: Nothing to be done for 'modules/base/pymod/CMakeFiles/_ost_base.dir/build'.
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gl_include.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gl_include.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./point.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./point.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/pssm_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/seq/pssm_io_handler.hh
+[ 6%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_mat3.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_mat3.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_mat3.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_mat3.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/tests/test_mat3.cc
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/python_tokenizer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/python_tokenizer.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./polygon_mask.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./polygon_mask.hh
+[ 6%] Built target _ost_base
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./glext_include.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./glext_include.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./progress.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./progress.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/python_syntax_highlighter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/python_syntax_highlighter.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/clustal_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/seq/clustal_io_handler.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./view_type_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./view_type_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/io_profile.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./io_profile.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./material.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./material.hh
+[ 6%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_mat4.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_mat4.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_mat4.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_mat4.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/tests/test_mat4.cc
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/text_logger.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./size.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./size.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/load.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/seq/load.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./spherical_mask.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./spherical_mask.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./render_mode.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./render_mode.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./view_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./view_op.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/root_node.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/scene_win/root_node.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/dcd_io.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./dcd_io.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/python_interpreter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./util.cc /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./util.cc
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/seq/save.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/seq/save.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./xcs_editor.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./xcs_editor.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gradient.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gradient.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/render_mode_node.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/scene_win/render_mode_node.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./material.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./material.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./util.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./util.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/python_interpreter_worker.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./bounding_box.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./bounding_box.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gradient_manager.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gradient_manager.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/entity_io_crd_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./entity_io_crd_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/render_modes_node.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/scene_win/render_modes_node.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/entity_io_pqr_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./entity_io_pqr_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gradient.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gradient.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./binary_data_sink.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./binary_data_sink.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/python_shell_text_document_layout.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/python_shell_text_document_layout.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./value_util.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./value_util.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./transform.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./transform.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./module_config.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/scene_node.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/scene_win/scene_node.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gradient_manager.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gradient_manager.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./io_manager.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./io_manager.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/shell_history.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/shell_history.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./vecmat.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./vecmat.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/./module_config.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/entity_io_mae_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./entity_io_mae_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./primitives.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./primitives.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./binary_data_source.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./binary_data_source.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/state_machine.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/state_machine.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./module_config.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/img/base/src/./mask_info_convert.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/img/./mask_info_convert.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/img/base/src/CMakeFiles/ost_img.dir/build.make modules/img/base/src/CMakeFiles/ost_img.dir/build
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./module_config.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./primitives.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./primitives.hh
+[ 6%] Built target ost_mol_headers
+make -f modules/info/pymod/CMakeFiles/_ost_info.dir/build.make modules/info/pymod/CMakeFiles/_ost_info.dir/depend
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/state.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/state.hh
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/info/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/info/pymod/CMakeFiles/_ost_info.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/scene_win.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/scene_win/scene_win.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./container_serialization.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./container_serialization.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./povray_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./povray_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/entity_io_mmcif_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./entity_io_mmcif_handler.hh
-[ 7%] Built target ost_mol_headers
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/transition.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/transition.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./swap_util.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./swap_util.hh
+[ 6%] Built target ost_img_headers
make -f modules/mol/base/src/CMakeFiles/ost_mol.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol.dir/depend
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/scene_win_model.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/scene_win/scene_win_model.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/mol/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./povray.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./povray.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/entity_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./entity_io_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/messages/message_widget.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/messages/message_widget.hh
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/python_shell/transition_guard.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/python_shell/transition_guard.hh
+make -f modules/info/pymod/CMakeFiles/_ost_info.dir/build.make modules/info/pymod/CMakeFiles/_ost_info.dir/build
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./io_utils.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./io_utils.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[4]: Nothing to be done for 'modules/img/base/src/CMakeFiles/ost_img.dir/build'.
+make[4]: Nothing to be done for 'modules/info/pymod/CMakeFiles/_ost_info.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/button_bar.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/panels/button_bar.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./exporter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./exporter.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/pdb_reader.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./pdb_reader.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/messages/message_box_widget.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/messages/message_box_widget.hh
-[ 11%] Built target ost_img
-make -f modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg.dir/depend
-make -f modules/img/base/pymod/CMakeFiles/_ost_img.dir/build.make modules/img/base/pymod/CMakeFiles/_ost_img.dir/depend
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./io_exception.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./io_exception.hh
+[ 6%] Built target _ost_info
+make -f modules/img/base/src/CMakeFiles/ost_img.dir/build.make modules/img/base/src/CMakeFiles/ost_img.dir/depend
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/drop_box.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/panels/drop_box.hh
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/img/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/src/CMakeFiles/ost_img.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./exporter_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./exporter_fw.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./convert.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./convert.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gost_exporter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gost_exporter.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./converting_streams.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./converting_streams.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./color_ops/map_handle_color_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./map_handle_color_op.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/panel_bar.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/panels/panel_bar.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./formatted_line.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./formatted_line.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./map_iso.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./map_iso.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./map_slab.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./map_slab.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/panel_manager.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/panels/panel_manager.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./map_iso_prop.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./map_iso_prop.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/chemdict_parser.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./chemdict_parser.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/bottom_bar.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/panels/bottom_bar.hh
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/star_parser.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./star_parser.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/button_box.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/panels/button_box.hh
+[ 6%] Built target ost_gfx_headers
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/star_writer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./star_writer.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/event_button.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/panels/event_button.hh
+[ 6%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_op2.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_op2.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_op2.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_op2.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/tests/test_op2.cc
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/mmcif_reader.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./mmcif_reader.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/panel_widget_container.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/panels/panel_widget_container.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/mmcif_info.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./mmcif_info.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/panel_bar_widget_holder.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/panels/panel_bar_widget_holder.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/mmcif_writer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./mmcif_writer.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/side_bar.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/panels/side_bar.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/io_profile.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./io_profile.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/splitter_panel_bar.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/panels/splitter_panel_bar.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/dcd_io.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./dcd_io.hh
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/img/base/src/CMakeFiles/ost_img.dir/build.make modules/img/base/src/CMakeFiles/ost_img.dir/build
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/entity_io_crd_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./entity_io_crd_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/panels/tabbed_panel_bar.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/panels/tabbed_panel_bar.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/img/base/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/pymod/CMakeFiles/_ost_img.dir/DependInfo.cmake "--color="
+make[4]: Nothing to be done for 'modules/img/base/src/CMakeFiles/ost_img.dir/build'.
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/entity_io_pqr_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./entity_io_pqr_handler.hh
+[ 10%] Built target ost_img
+make -f modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/img/alg/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg.dir/DependInfo.cmake "--color="
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/messages/log_reader.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/messages/log_reader.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/context_menu.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/scene_win/context_menu.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/current_selection_node.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/scene_win/current_selection_node.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/entity_io_mae_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./entity_io_mae_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/custom_part_node.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/scene_win/custom_part_node.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/entity_io_mmcif_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./entity_io_mmcif_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/entity_node.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/scene_win/entity_node.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/entity_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./entity_io_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/entity_part_node.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/scene_win/entity_part_node.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/gfx_scene_node.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/scene_win/gfx_scene_node.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/pdb_reader.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./pdb_reader.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/entity_io_pdb_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./entity_io_pdb_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./gost_exporter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./gost_exporter.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/argand.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/argand.hh
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/label_node.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/scene_win/label_node.hh
+make -f modules/mol/base/src/CMakeFiles/ost_mol.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol.dir/build
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/root_node.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/scene_win/root_node.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/pdb_writer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./pdb_writer.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./color_ops/map_handle_color_op.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./map_handle_color_op.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/data_viewer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/entity_io_sdf_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./entity_io_sdf_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./map_iso.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./map_iso.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/render_mode_node.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/scene_win/render_mode_node.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/sdf_reader.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./sdf_reader.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/data_viewer_panel.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer_panel.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./map_slab.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./map_slab.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/render_modes_node.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/scene_win/render_modes_node.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/sdf_writer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./sdf_writer.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/data_viewer_panel_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer_panel_base.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gfx/src/./map_iso_prop.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gfx/./map_iso_prop.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/draw_overlay.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/draw_overlay.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/save_entity.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./save_entity.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/scene_node.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/scene_win/scene_node.hh
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make[4]: Nothing to be done for 'modules/mol/base/src/CMakeFiles/ost_mol.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 16%] Built target ost_mol
+make -f modules/img/base/pymod/CMakeFiles/_ost_img.dir/build.make modules/img/base/pymod/CMakeFiles/_ost_img.dir/depend
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/save_entity.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./save_entity.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/scene_win.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/scene_win/scene_win.hh
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/img/base/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/pymod/CMakeFiles/_ost_img.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/load_entity.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./load_entity.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/drawing_functions.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/drawing_functions.hh
-[ 11%] Built target ost_gfx_headers
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/scene_win/scene_win_model.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/scene_win/scene_win_model.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/surface_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./surface_io_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/fft_panel.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/fft_panel.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/load_surface.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./load_surface.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/info_panel.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/info_panel.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/surface_io_msms_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./surface_io_msms_handler.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/img/base/pymod/CMakeFiles/_ost_img.dir/build.make modules/img/base/pymod/CMakeFiles/_ost_img.dir/build
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/img2qt.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/img2qt.hh
+make -f modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/messages/message_widget.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/messages/message_widget.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/surface_io_msms_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./surface_io_msms_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/messages/message_box_widget.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/messages/message_box_widget.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/messages/log_reader.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/messages/log_reader.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/pdb_str.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./pdb_str.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/mask_overlay.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/mask_overlay.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/argand.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/argand.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[4]: Nothing to be done for 'modules/img/base/pymod/CMakeFiles/_ost_img.dir/build'.
+make[4]: Nothing to be done for 'modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/sdf_str.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./sdf_str.hh
-[ 12%] Built target _ost_img
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/null_overlay.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/null_overlay.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/mmcif_str.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./mmcif_str.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/overlay.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/overlay.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/data_viewer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh
+[ 19%] Built target ost_img_alg
+make -f modules/base/tests/CMakeFiles/ost_base_tests.dir/build.make modules/base/tests/CMakeFiles/ost_base_tests.dir/depend
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/base/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/tests/CMakeFiles/ost_base_tests.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/stereochemical_params_reader.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./stereochemical_params_reader.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/overlay_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/overlay_base.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/data_viewer_panel.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer_panel.hh
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/base/tests/CMakeFiles/ost_base_tests.dir/build.make modules/base/tests/CMakeFiles/ost_base_tests.dir/build
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 19%] Building CXX object modules/base/tests/CMakeFiles/ost_base_tests.dir/test_generic_property.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/data_viewer_panel_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer_panel_base.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/tests/CMakeFiles/ost_base_tests.dir/test_generic_property.cc.o -MF CMakeFiles/ost_base_tests.dir/test_generic_property.cc.o.d -o CMakeFiles/ost_base_tests.dir/test_generic_property.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/base/tests/test_generic_property.cc
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./mol/omf.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./omf.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/overlay_base_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/overlay_base_fw.hh
+make -f modules/img/base/pymod/CMakeFiles/_ost_img.dir/build.make modules/img/base/pymod/CMakeFiles/_ost_img.dir/build
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/draw_overlay.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/draw_overlay.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./seq/sequence_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./sequence_io_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/overlay_manager.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./seq/fasta_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./fasta_io_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/drawing_functions.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/drawing_functions.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[4]: Nothing to be done for 'modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build'.
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/overlay_manager_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_fw.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./seq/pir_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./pir_io_handler.hh
-[ 16%] Built target ost_img_alg
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/overlay_manager_gui.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_gui.hh
-make -f modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build.make modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/depend
+make[4]: Nothing to be done for 'modules/img/base/pymod/CMakeFiles/_ost_img.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/mol/base/src/CMakeFiles/ost_mol.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol.dir/build
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/fft_panel.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/fft_panel.hh
+[ 20%] Built target _ost_img
make -f modules/img/base/tests/CMakeFiles/ost_img_tests.dir/build.make modules/img/base/tests/CMakeFiles/ost_img_tests.dir/depend
-make -f modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/build.make modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/depend
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/img/alg/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./seq/fasta_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./fasta_io_handler.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/img/base/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/tests/CMakeFiles/ost_img_tests.dir/DependInfo.cmake "--color="
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/img/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/info_panel.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/info_panel.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./seq/pir_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./pir_io_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/img2qt.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/img2qt.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./seq/promod_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./promod_io_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/overlay_manager_observer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_observer.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./seq/profile_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./profile_io_handler.hh
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/build.make modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/build
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make -f modules/img/base/tests/CMakeFiles/ost_img_tests.dir/build.make modules/img/base/tests/CMakeFiles/ost_img_tests.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/pointlist_overlay.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/pointlist_overlay.hh
-[ 16%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_clear.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./seq/hhm_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./hhm_io_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_clear.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_clear.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_clear.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/tests/test_clear.cc
-[ 16%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_conj.cc.o
-[ 16%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_data.cc.o
-[ 16%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_extent.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_conj.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_conj.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_conj.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/tests/test_conj.cc
+[ 20%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_data.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_data.cc.o -MF CMakeFiles/ost_img_tests.dir/test_data.cc.o.d -o CMakeFiles/ost_img_tests.dir/test_data.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/tests/test_data.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_extent.cc.o -MF CMakeFiles/ost_img_tests.dir/test_extent.cc.o.d -o CMakeFiles/ost_img_tests.dir/test_extent.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/tests/test_extent.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/pointlist_overlay_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/pointlist_overlay_base.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./seq/profile_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./profile_io_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/mask_overlay.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/mask_overlay.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./seq/hhm_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./hhm_io_handler.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/null_overlay.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/null_overlay.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./seq/pssm_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./pssm_io_handler.hh
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[4]: Nothing to be done for 'modules/mol/base/src/CMakeFiles/ost_mol.dir/build'.
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/overlay.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/overlay.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./seq/clustal_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./clustal_io_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/strategies.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/strategies.hh
-[ 21%] Built target ost_mol
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/overlay_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/overlay_base.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./seq/load.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./load.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/strategies_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/strategies_fw.hh
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build.make modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build
-[ 21%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_convolute.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/overlay_base_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/overlay_base_fw.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./seq/save.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./save.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_convolute.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_convolute.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_convolute.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/tests/test_convolute.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/viewer_normalizer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/viewer_normalizer.hh
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[4]: Nothing to be done for 'modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build'.
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./img/load_map.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./load_map.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./file_browser.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./file_browser.hh
-[ 22%] Built target _ost_img_alg
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/overlay_manager.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/overlay_manager_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_fw.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./img/map_io_df3_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./map_io_df3_handler.hh
-[ 23%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_discrete_shrink.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_discrete_shrink.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_discrete_shrink.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_discrete_shrink.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/tests/test_discrete_shrink.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./file_type_dialog.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./file_type_dialog.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./img/image_format.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./image_format.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./file_viewer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./file_viewer.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./gl_canvas.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./gl_canvas.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/overlay_manager_gui.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_gui.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./img/map_io_dx_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./map_io_dx_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./gl_win.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./gl_win.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./img/map_io_spi_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./map_io_spi_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./scene_menu.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./scene_menu.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./img/map_io_situs_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./map_io_situs_handler.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./img/map_io_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./map_io_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./gosty_app.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./gosty_app.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./img/map_io_mrc_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./map_io_mrc_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./admin.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./admin.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/overlay_manager_observer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_observer.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/pointlist_overlay.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/pointlist_overlay.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./img/map_io_dat_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./map_io_dat_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./module_config.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/pointlist_overlay_base.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/pointlist_overlay_base.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./img/map_io_ipl_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./map_io_ipl_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./main.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./main.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/strategies.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/strategies.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./img/map_io_jpk_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./map_io_jpk_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./main_area.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./main_area.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/strategies_fw.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/strategies_fw.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./img/map_io_nanoscope_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./map_io_nanoscope_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./perspective.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./perspective.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./img/map_io_png_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./map_io_png_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./scene_selection.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./scene_selection.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/data_viewer/viewer_normalizer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/data_viewer/viewer_normalizer.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./img/map_io_dm3_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./map_io_dm3_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./main_window.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./main_window.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./file_browser.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./file_browser.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./img/map_io_tiff_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./map_io_tiff_handler.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./dock_widget.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./dock_widget.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./file_type_dialog.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./file_type_dialog.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./img/tiff_util.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./tiff_util.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./dock_widget.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./dock_widget.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./file_viewer.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./file_viewer.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/io/src/./img/jpk_util.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/io/./jpk_util.hh
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./thin_splitter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./thin_splitter.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./gl_canvas.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./gl_canvas.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./widget.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./widget.hh
-[ 23%] Built target ost_io_headers
-make -f modules/seq/base/src/CMakeFiles/ost_seq.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq.dir/depend
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./gl_win.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./gl_win.hh
+[ 20%] Built target ost_io_headers
+make -f modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/build.make modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/depend
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./scene_menu.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./scene_menu.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/img/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./gosty_app.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./gosty_app.hh
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/build.make modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/build
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./admin.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./admin.hh
+[ 20%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_clear.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_clear.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_clear.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_clear.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/tests/test_clear.cc
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./module_config.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./module_config.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./main.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./main.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./main_area.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./main_area.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./perspective.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./perspective.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./scene_selection.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./scene_selection.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./main_window.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./main_window.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./dock_widget.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./dock_widget.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./dock_widget.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./dock_widget.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./thin_splitter.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./thin_splitter.hh
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./widget.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./widget.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./widget_geom_handler.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./widget_geom_handler.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./widget_pool.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./widget_pool.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./widget_registry.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./widget_registry.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./widget_state_saver.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./widget_state_saver.hh
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/modules/gui/src/./file_loader.hh /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/gui/./file_loader.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/seq/base/src/CMakeFiles/ost_seq.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq.dir/build
+[ 20%] Built target ost_gui_headers
+make -f modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/build.make modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/depend
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/build.make modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[4]: Nothing to be done for 'modules/seq/base/src/CMakeFiles/ost_seq.dir/build'.
+[ 20%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_atom_groups.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_atom_groups.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_atom_groups.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_atom_groups.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_atom_groups.cc
+[ 20%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_extent.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_extent.cc.o -MF CMakeFiles/ost_img_tests.dir/test_extent.cc.o.d -o CMakeFiles/ost_img_tests.dir/test_extent.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/tests/test_extent.cc
+[ 20%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_image.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_image.cc.o -MF CMakeFiles/ost_img_tests.dir/test_image.cc.o.d -o CMakeFiles/ost_img_tests.dir/test_image.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/tests/test_image.cc
+[ 21%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_op3.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_op3.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_op3.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_op3.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/tests/test_op3.cc
+[ 21%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_image_state.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_image_state.cc.o -MF CMakeFiles/ost_img_tests.dir/test_image_state.cc.o.d -o CMakeFiles/ost_img_tests.dir/test_image_state.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/tests/test_image_state.cc
+[ 21%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_op4.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_op4.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_op4.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_op4.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/tests/test_op4.cc
+[ 21%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_quat.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_quat.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_quat.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_quat.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/tests/test_quat.cc
+[ 21%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_conj.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_conj.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_conj.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_conj.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/tests/test_conj.cc
+[ 21%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_image_state_visitor.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_image_state_visitor.cc.o -MF CMakeFiles/ost_img_tests.dir/test_image_state_visitor.cc.o.d -o CMakeFiles/ost_img_tests.dir/test_image_state_visitor.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/tests/test_image_state_visitor.cc
+[ 22%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_index.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_index.cc.o -MF CMakeFiles/ost_img_tests.dir/test_index.cc.o.d -o CMakeFiles/ost_img_tests.dir/test_index.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/tests/test_index.cc
+[ 22%] Building CXX object modules/base/tests/CMakeFiles/ost_base_tests.dir/test_string_ref.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/tests/CMakeFiles/ost_base_tests.dir/test_string_ref.cc.o -MF CMakeFiles/ost_base_tests.dir/test_string_ref.cc.o.d -o CMakeFiles/ost_base_tests.dir/test_string_ref.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/base/tests/test_string_ref.cc
+[ 22%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_convolute.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_convolute.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_convolute.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_convolute.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/tests/test_convolute.cc
+[ 22%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_vec2.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_vec2.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_vec2.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_vec2.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/tests/test_vec2.cc
+[ 22%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_chain.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_chain.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_chain.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_chain.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_chain.cc
+[ 22%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_vec3.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_vec3.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_vec3.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_vec3.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/tests/test_vec3.cc
+[ 23%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_discrete_shrink.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_discrete_shrink.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_discrete_shrink.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_discrete_shrink.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/tests/test_discrete_shrink.cc
+[ 23%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_point.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_point.cc.o -MF CMakeFiles/ost_img_tests.dir/test_point.cc.o.d -o CMakeFiles/ost_img_tests.dir/test_point.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/tests/test_point.cc
+[ 23%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_sampling.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_sampling.cc.o -MF CMakeFiles/ost_img_tests.dir/test_sampling.cc.o.d -o CMakeFiles/ost_img_tests.dir/test_sampling.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/tests/test_sampling.cc
+[ 23%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_domains.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_domains.cc.o -MF CMakeFiles/ost_img_tests.dir/test_domains.cc.o.d -o CMakeFiles/ost_img_tests.dir/test_domains.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/tests/test_domains.cc
+[ 23%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_fft.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_fft.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_fft.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_fft.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/tests/test_fft.cc
+[ 23%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_size.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_size.cc.o -MF CMakeFiles/ost_img_tests.dir/test_size.cc.o.d -o CMakeFiles/ost_img_tests.dir/test_size.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/tests/test_size.cc
+[ 23%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_value_holder.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_value_holder.cc.o -MF CMakeFiles/ost_img_tests.dir/test_value_holder.cc.o.d -o CMakeFiles/ost_img_tests.dir/test_value_holder.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/tests/test_value_holder.cc
+[ 23%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/tests.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/base/tests/CMakeFiles/ost_img_tests.dir/tests.cc.o -MF CMakeFiles/ost_img_tests.dir/tests.cc.o.d -o CMakeFiles/ost_img_tests.dir/tests.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/tests/tests.cc
+[ 23%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_vec4.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_vec4.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_vec4.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_vec4.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/tests/test_vec4.cc
+[ 23%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_fill.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_fill.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_fill.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_fill.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/tests/test_fill.cc
+[ 23%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_transform.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_transform.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_transform.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_transform.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/tests/test_transform.cc
+[ 23%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_filter.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_filter.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_filter.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_filter.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/tests/test_filter.cc
+[ 23%] Building CXX object modules/base/tests/CMakeFiles/ost_base_tests.dir/test_pod_vector.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/tests/CMakeFiles/ost_base_tests.dir/test_pod_vector.cc.o -MF CMakeFiles/ost_base_tests.dir/test_pod_vector.cc.o.d -o CMakeFiles/ost_base_tests.dir/test_pod_vector.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/base/tests/test_pod_vector.cc
+[ 23%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_histogram.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_histogram.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_histogram.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_histogram.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/tests/test_histogram.cc
+[ 23%] Building CXX object modules/base/tests/CMakeFiles/ost_base_tests.dir/tests.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/tests/CMakeFiles/ost_base_tests.dir/tests.cc.o -MF CMakeFiles/ost_base_tests.dir/tests.cc.o.d -o CMakeFiles/ost_base_tests.dir/tests.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/base/tests/tests.cc
+[ 23%] Linking CXX executable ../../../../tests/ost_img_tests
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_img_tests.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/ost_img_tests.dir/link.d CMakeFiles/ost_img_tests.dir/test_data.cc.o CMakeFiles/ost_img_tests.dir/test_extent.cc.o CMakeFiles/ost_img_tests.dir/test_image.cc.o CMakeFiles/ost_img_tests.dir/test_image_state.cc.o CMakeFiles/ost_img_tests.dir/test_image_state_visitor.cc.o CMakeFiles/ost_img_tests.dir/test_index.cc.o CMakeFiles/ost_img_tests.dir/test_point.cc.o CMakeFiles/ost_img_tests.dir/test_sampling.cc.o CMakeFiles/ost_img_tests.dir/test_domains.cc.o CMakeFiles/ost_img_tests.dir/test_size.cc.o CMakeFiles/ost_img_tests.dir/test_value_holder.cc.o CMakeFiles/ost_img_tests.dir/tests.cc.o -o ../../../../tests/ost_img_tests -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib /usr/lib/i386-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../../stage/lib/libost_img_alg.so.2.9.2 ../../../../stage/lib/libost_img.so.2.9.2 ../../../../stage/lib/libost_info.so.2.9.2 ../../../../stage/lib/libost_base.so.2.9.2 ../../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libfftw3f_threads.so
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 23%] Built target ost_gui_headers
-make -f modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build.make modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/depend
+[ 23%] Built target ost_img_tests
+make -f modules/seq/base/src/CMakeFiles/ost_seq.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/DependInfo.cmake "--color="
-[ 25%] Built target ost_seq
-make -f modules/base/tests/CMakeFiles/ost_base_tests.dir/build.make modules/base/tests/CMakeFiles/ost_base_tests.dir/depend
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/seq/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/seq/base/src/CMakeFiles/ost_seq.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/base/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/tests/CMakeFiles/ost_base_tests.dir/DependInfo.cmake "--color="
+make[4]: Nothing to be done for 'modules/seq/base/src/CMakeFiles/ost_seq.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/base/tests/CMakeFiles/ost_base_tests.dir/build.make modules/base/tests/CMakeFiles/ost_base_tests.dir/build
+[ 25%] Built target ost_seq
+make -f modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build.make modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/depend
+[ 25%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_mirror.cc.o
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 25%] Building CXX object modules/base/tests/CMakeFiles/ost_base_tests.dir/test_generic_property.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/tests/CMakeFiles/ost_base_tests.dir/test_generic_property.cc.o -MF CMakeFiles/ost_base_tests.dir/test_generic_property.cc.o.d -o CMakeFiles/ost_base_tests.dir/test_generic_property.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/base/tests/test_generic_property.cc
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/mol/base/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_mirror.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_mirror.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_mirror.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/tests/test_mirror.cc
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make -f modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build.make modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make[4]: Nothing to be done for 'modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
[ 27%] Built target _ost_mol
-[ 27%] Building CXX object modules/base/tests/CMakeFiles/ost_base_tests.dir/test_string_ref.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/tests/CMakeFiles/ost_base_tests.dir/test_string_ref.cc.o -MF CMakeFiles/ost_base_tests.dir/test_string_ref.cc.o.d -o CMakeFiles/ost_base_tests.dir/test_string_ref.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/base/tests/test_string_ref.cc
-[ 27%] Building CXX object modules/base/tests/CMakeFiles/ost_base_tests.dir/test_pod_vector.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/tests/CMakeFiles/ost_base_tests.dir/test_pod_vector.cc.o -MF CMakeFiles/ost_base_tests.dir/test_pod_vector.cc.o.d -o CMakeFiles/ost_base_tests.dir/test_pod_vector.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/base/tests/test_pod_vector.cc
-[ 27%] Building CXX object modules/base/tests/CMakeFiles/ost_base_tests.dir/tests.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/tests/CMakeFiles/ost_base_tests.dir/tests.cc.o -MF CMakeFiles/ost_base_tests.dir/tests.cc.o.d -o CMakeFiles/ost_base_tests.dir/tests.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/base/tests/tests.cc
-[ 27%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_image.cc.o
-[ 27%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_image_state.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_image.cc.o -MF CMakeFiles/ost_img_tests.dir/test_image.cc.o.d -o CMakeFiles/ost_img_tests.dir/test_image.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/tests/test_image.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_image_state.cc.o -MF CMakeFiles/ost_img_tests.dir/test_image_state.cc.o.d -o CMakeFiles/ost_img_tests.dir/test_image_state.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/tests/test_image_state.cc
-[ 27%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_fft.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_fft.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_fft.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_fft.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/tests/test_fft.cc
+make -f modules/db/src/CMakeFiles/ost_db.dir/build.make modules/db/src/CMakeFiles/ost_db.dir/depend
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/db/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/src/CMakeFiles/ost_db.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/db/src/CMakeFiles/ost_db.dir/build.make modules/db/src/CMakeFiles/ost_db.dir/build
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make[4]: Nothing to be done for 'modules/db/src/CMakeFiles/ost_db.dir/build'.
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 27%] Built target ost_db
+make -f modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build.make modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/depend
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/img/alg/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/DependInfo.cmake "--color="
+[ 27%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/tests.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/tests.cc.o -MF CMakeFiles/ost_geom_tests.dir/tests.cc.o.d -o CMakeFiles/ost_geom_tests.dir/tests.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/geom/tests/tests.cc
+[ 27%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_conn.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_conn.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_conn.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_conn.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_conn.cc
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build.make modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make[4]: Nothing to be done for 'modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build'.
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 29%] Built target _ost_img_alg
make -f modules/bindings/src/CMakeFiles/ost_bindings.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/bindings/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings.dir/DependInfo.cmake "--color="
@@ -23192,480 +23278,1020 @@
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make[4]: Nothing to be done for 'modules/bindings/src/CMakeFiles/ost_bindings.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 27%] Built target ost_bindings
-make -f modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/build.make modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/depend
+[ 29%] Built target ost_bindings
+make -f modules/img/base/tests/CMakeFiles/ost_img_tests_run.dir/build.make modules/img/base/tests/CMakeFiles/ost_img_tests_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/img/base/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/tests/CMakeFiles/ost_img_tests_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/build.make modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/build
+make -f modules/img/base/tests/CMakeFiles/ost_img_tests_run.dir/build.make modules/img/base/tests/CMakeFiles/ost_img_tests_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 27%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_atom_groups.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_atom_groups.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_atom_groups.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_atom_groups.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_atom_groups.cc
+[ 29%] running checks for module img
+cd /build/reproducible-path/openstructure-2.9.2/modules/img/base/tests && env OST_ROOT=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/tests/ost_img_tests
+[ 30%] Linking CXX executable ../../../tests/ost_base_tests
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_base_tests.dir/link.txt --verbose=1
+Running 44 test cases...
+
+[1;32;49m*** No errors detected
+[0;39;49mmake[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 30%] Built target ost_img_tests_run
make -f modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/build.make modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/seq/base/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make -f modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/build.make modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 27%] Building CXX object modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_sequence.cc.o
+[ 30%] Building CXX object modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_sequence.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_sequence.cc.o -MF CMakeFiles/ost_seq_tests.dir/test_sequence.cc.o.d -o CMakeFiles/ost_seq_tests.dir/test_sequence.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/base/tests/test_sequence.cc
-[ 27%] Building CXX object modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_aligned_column.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_aligned_column.cc.o -MF CMakeFiles/ost_seq_tests.dir/test_aligned_column.cc.o.d -o CMakeFiles/ost_seq_tests.dir/test_aligned_column.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/base/tests/test_aligned_column.cc
-[ 27%] Building CXX object modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_aligned_region.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_aligned_region.cc.o -MF CMakeFiles/ost_seq_tests.dir/test_aligned_region.cc.o.d -o CMakeFiles/ost_seq_tests.dir/test_aligned_region.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/base/tests/test_aligned_region.cc
-[ 27%] Building CXX object modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_alignment.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_alignment.cc.o -MF CMakeFiles/ost_seq_tests.dir/test_alignment.cc.o.d -o CMakeFiles/ost_seq_tests.dir/test_alignment.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/base/tests/test_alignment.cc
-[ 29%] Building CXX object modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_profile.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_profile.cc.o -MF CMakeFiles/ost_seq_tests.dir/test_profile.cc.o.d -o CMakeFiles/ost_seq_tests.dir/test_profile.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/base/tests/test_profile.cc
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/ost_base_tests.dir/link.d CMakeFiles/ost_base_tests.dir/test_generic_property.cc.o CMakeFiles/ost_base_tests.dir/test_string_ref.cc.o CMakeFiles/ost_base_tests.dir/test_pod_vector.cc.o CMakeFiles/ost_base_tests.dir/tests.cc.o -o ../../../tests/ost_base_tests -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib /usr/lib/i386-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../stage/lib/libost_mol.so.2.9.2 ../../../stage/lib/libost_info.so.2.9.2 ../../../stage/lib/libost_base.so.2.9.2 ../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 30%] Built target ost_base_tests
make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/DependInfo.cmake "--color="
-make -f modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build.make modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/depend
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/seq/base/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/DependInfo.cmake "--color="
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build.make modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[4]: Nothing to be done for 'modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build'.
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build
-[ 30%] Built target _ost_seq
-make -f modules/db/src/CMakeFiles/ost_db.dir/build.make modules/db/src/CMakeFiles/ost_db.dir/depend
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/db/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/src/CMakeFiles/ost_db.dir/DependInfo.cmake "--color="
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make[4]: Nothing to be done for 'modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 30%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_fill.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_fill.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_fill.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_fill.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/tests/test_fill.cc
[ 31%] Built target ost_seq_alg
-make -f modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build.make modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/depend
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/db/src/CMakeFiles/ost_db.dir/build.make modules/db/src/CMakeFiles/ost_db.dir/build
-make -f modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build.make modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/depend
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/DependInfo.cmake "--color="
+make -f modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build.make modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/seq/base/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build.make modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[4]: Nothing to be done for 'modules/db/src/CMakeFiles/ost_db.dir/build'.
+make[4]: Nothing to be done for 'modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 31%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_image_state_visitor.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_image_state_visitor.cc.o -MF CMakeFiles/ost_img_tests.dir/test_image_state_visitor.cc.o.d -o CMakeFiles/ost_img_tests.dir/test_image_state_visitor.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/tests/test_image_state_visitor.cc
-[ 31%] Built target ost_db
+[ 32%] Built target _ost_seq
make -f modules/conop/src/CMakeFiles/ost_conop.dir/build.make modules/conop/src/CMakeFiles/ost_conop.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/conop/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/src/CMakeFiles/ost_conop.dir/DependInfo.cmake "--color="
+[ 32%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_coord_group.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_coord_group.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_coord_group.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_coord_group.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_coord_group.cc
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build.make modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build.make modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[4]: Nothing to be done for 'modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build'.
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/conop/src/CMakeFiles/ost_conop.dir/build.make modules/conop/src/CMakeFiles/ost_conop.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[4]: Nothing to be done for 'modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build'.
+make[4]: Nothing to be done for 'modules/conop/src/CMakeFiles/ost_conop.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 31%] Built target _ost_seq_alg
+[ 33%] Built target ost_conop
make -f modules/db/pymod/CMakeFiles/_ost_db.dir/build.make modules/db/pymod/CMakeFiles/_ost_db.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/db/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/pymod/CMakeFiles/_ost_db.dir/DependInfo.cmake "--color="
-[ 31%] Built target _ost_bindings
-[ 31%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_chain.cc.o
-[ 31%] Building CXX object modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/tests.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_chain.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_chain.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_chain.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_chain.cc
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/tests.cc.o -MF CMakeFiles/ost_seq_tests.dir/tests.cc.o.d -o CMakeFiles/ost_seq_tests.dir/tests.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/base/tests/tests.cc
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make -f modules/db/pymod/CMakeFiles/_ost_db.dir/build.make modules/db/pymod/CMakeFiles/_ost_db.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make[4]: Nothing to be done for 'modules/db/pymod/CMakeFiles/_ost_db.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/conop/src/CMakeFiles/ost_conop.dir/build.make modules/conop/src/CMakeFiles/ost_conop.dir/build
-[ 31%] Built target _ost_db
-[ 31%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_filter.cc.o
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[4]: Nothing to be done for 'modules/conop/src/CMakeFiles/ost_conop.dir/build'.
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_filter.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_filter.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_filter.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/tests/test_filter.cc
-[ 31%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_histogram.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_histogram.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_histogram.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_histogram.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/tests/test_histogram.cc
-[ 32%] Built target ost_conop
-[ 32%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_conn.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_conn.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_conn.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_conn.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_conn.cc
-[ 32%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_coord_group.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_coord_group.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_coord_group.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_coord_group.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_coord_group.cc
-[ 33%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_index.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_index.cc.o -MF CMakeFiles/ost_img_tests.dir/test_index.cc.o.d -o CMakeFiles/ost_img_tests.dir/test_index.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/tests/test_index.cc
-[ 33%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_point.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_point.cc.o -MF CMakeFiles/ost_img_tests.dir/test_point.cc.o.d -o CMakeFiles/ost_img_tests.dir/test_point.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/tests/test_point.cc
-[ 33%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_sampling.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_sampling.cc.o -MF CMakeFiles/ost_img_tests.dir/test_sampling.cc.o.d -o CMakeFiles/ost_img_tests.dir/test_sampling.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/tests/test_sampling.cc
-[ 33%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_domains.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_domains.cc.o -MF CMakeFiles/ost_img_tests.dir/test_domains.cc.o.d -o CMakeFiles/ost_img_tests.dir/test_domains.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/tests/test_domains.cc
-[ 33%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_builder.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_builder.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_builder.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_builder.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_builder.cc
-[ 33%] Linking CXX executable ../../../tests/ost_geom_tests
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_geom_tests.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/ost_geom_tests.dir/link.d CMakeFiles/ost_geom_tests.dir/test_composite3.cc.o CMakeFiles/ost_geom_tests.dir/test_composite2.cc.o CMakeFiles/ost_geom_tests.dir/test_mat2.cc.o CMakeFiles/ost_geom_tests.dir/test_mat3.cc.o CMakeFiles/ost_geom_tests.dir/test_mat4.cc.o CMakeFiles/ost_geom_tests.dir/test_op2.cc.o CMakeFiles/ost_geom_tests.dir/test_op3.cc.o CMakeFiles/ost_geom_tests.dir/test_op4.cc.o CMakeFiles/ost_geom_tests.dir/test_quat.cc.o CMakeFiles/ost_geom_tests.dir/test_vec2.cc.o CMakeFiles/ost_geom_tests.dir/test_vec3.cc.o CMakeFiles/ost_geom_tests.dir/test_vec4.cc.o CMakeFiles/ost_geom_tests.dir/test_transform.cc.o CMakeFiles/ost_geom_tests.dir/tests.cc.o -o ../../../tests/ost_geom_tests -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib /usr/lib/i386-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 33%] Built target ost_geom_tests
-[ 33%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_delete.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_delete.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_delete.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_delete.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_delete.cc
-make -f modules/gfx/src/CMakeFiles/ost_gfx.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx.dir/depend
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/gfx/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx.dir/DependInfo.cmake "--color="
-[ 33%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_entity.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_entity.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_entity.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_entity.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_entity.cc
-make -f modules/conop/pymod/CMakeFiles/_ost_conop.dir/build.make modules/conop/pymod/CMakeFiles/_ost_conop.dir/depend
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/conop/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/pymod/CMakeFiles/_ost_conop.dir/DependInfo.cmake "--color="
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/conop/pymod/CMakeFiles/_ost_conop.dir/build.make modules/conop/pymod/CMakeFiles/_ost_conop.dir/build
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[4]: Nothing to be done for 'modules/conop/pymod/CMakeFiles/_ost_conop.dir/build'.
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 34%] Built target _ost_conop
+[ 33%] Built target _ost_db
make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/gfx/src/CMakeFiles/ost_gfx.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx.dir/build
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build
+make -f modules/base/tests/CMakeFiles/ost_base_tests_run.dir/build.make modules/base/tests/CMakeFiles/ost_base_tests_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[4]: Nothing to be done for 'modules/gfx/src/CMakeFiles/ost_gfx.dir/build'.
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/base/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/tests/CMakeFiles/ost_base_tests_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/base/tests/CMakeFiles/ost_base_tests_run.dir/build.make modules/base/tests/CMakeFiles/ost_base_tests_run.dir/build
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 33%] running checks for module base
+cd /build/reproducible-path/openstructure-2.9.2/modules/base/tests && env OST_ROOT=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/tests/ost_base_tests
+Running 5 test cases...
+
+[1;32;49m*** No errors detected
+[0;39;49mmake[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make[4]: Nothing to be done for 'modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 41%] Built target ost_gfx
-[ 44%] Built target ost_mol_alg
+[ 35%] Built target ost_mol_alg
+[ 33%] Built target ost_base_tests_run
+make -f modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build.make modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/depend
make -f modules/conop/tests/CMakeFiles/ost_conop_tests.dir/build.make modules/conop/tests/CMakeFiles/ost_conop_tests.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/bindings/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/DependInfo.cmake "--color="
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/conop/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/tests/CMakeFiles/ost_conop_tests.dir/DependInfo.cmake "--color="
-[ 45%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_ics.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_ics.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_ics.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_ics.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_ics.cc
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build.make modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build
make -f modules/conop/tests/CMakeFiles/ost_conop_tests.dir/build.make modules/conop/tests/CMakeFiles/ost_conop_tests.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 45%] Building CXX object modules/conop/tests/CMakeFiles/ost_conop_tests.dir/test_amino_acids.cc.o
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make[4]: Nothing to be done for 'modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build'.
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 35%] Building CXX object modules/conop/tests/CMakeFiles/ost_conop_tests.dir/test_amino_acids.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/conop/tests/CMakeFiles/ost_conop_tests.dir/test_amino_acids.cc.o -MF CMakeFiles/ost_conop_tests.dir/test_amino_acids.cc.o.d -o CMakeFiles/ost_conop_tests.dir/test_amino_acids.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/conop/tests/test_amino_acids.cc
-[ 45%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_size.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_size.cc.o -MF CMakeFiles/ost_img_tests.dir/test_size.cc.o.d -o CMakeFiles/ost_img_tests.dir/test_size.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/tests/test_size.cc
-[ 45%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_query.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_query.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_query.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_query.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_query.cc
-[ 45%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_surface.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_surface.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_surface.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_surface.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_surface.cc
-[ 45%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_mirror.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_mirror.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_mirror.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_mirror.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/tests/test_mirror.cc
-[ 45%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_negate.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_negate.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_negate.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_negate.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/tests/test_negate.cc
-[ 45%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_residue.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_residue.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_residue.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_residue.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_residue.cc
-[ 46%] Linking CXX executable ../../../tests/ost_base_tests
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_base_tests.dir/link.txt --verbose=1
-[ 46%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_view.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_view.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_view.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_view.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_view.cc
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/ost_base_tests.dir/link.d CMakeFiles/ost_base_tests.dir/test_generic_property.cc.o CMakeFiles/ost_base_tests.dir/test_string_ref.cc.o CMakeFiles/ost_base_tests.dir/test_pod_vector.cc.o CMakeFiles/ost_base_tests.dir/tests.cc.o -o ../../../tests/ost_base_tests -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib /usr/lib/i386-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../stage/lib/libost_mol.so.2.9.2 ../../../stage/lib/libost_info.so.2.9.2 ../../../stage/lib/libost_base.so.2.9.2 ../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15
+[ 35%] Built target _ost_bindings
+make -f modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build.make modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/depend
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 46%] Built target ost_base_tests
-make -f modules/geom/tests/CMakeFiles/ost_geom_tests_run.dir/build.make modules/geom/tests/CMakeFiles/ost_geom_tests_run.dir/depend
+make -f modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build.make modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/geom/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/tests/CMakeFiles/ost_geom_tests_run.dir/DependInfo.cmake "--color="
+make[4]: Nothing to be done for 'modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/geom/tests/CMakeFiles/ost_geom_tests_run.dir/build.make modules/geom/tests/CMakeFiles/ost_geom_tests_run.dir/build
+[ 35%] Built target _ost_seq_alg
+make -f modules/gfx/src/CMakeFiles/ost_gfx.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 46%] running checks for module geom
-cd /build/reproducible-path/openstructure-2.9.2/modules/geom/tests && env OST_ROOT=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/tests/ost_geom_tests
-Running 25 test cases...
-
-[1;32;49m*** No errors detected
-[0;39;49mmake[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 46%] Built target ost_geom_tests_run
-make -f modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build.make modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/depend
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/gfx/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx.dir/DependInfo.cmake "--color="
+[ 35%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_negate.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_negate.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_negate.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_negate.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/tests/test_negate.cc
+[ 35%] Linking CXX executable ../../../tests/ost_geom_tests
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_geom_tests.dir/link.txt --verbose=1
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/gfx/src/CMakeFiles/ost_gfx.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/gfx/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/DependInfo.cmake "--color="
-[ 46%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_value_holder.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_value_holder.cc.o -MF CMakeFiles/ost_img_tests.dir/test_value_holder.cc.o.d -o CMakeFiles/ost_img_tests.dir/test_value_holder.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/tests/test_value_holder.cc
+make[4]: Nothing to be done for 'modules/gfx/src/CMakeFiles/ost_gfx.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build.make modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build
+[ 43%] Built target ost_gfx
+make -f modules/conop/pymod/CMakeFiles/_ost_conop.dir/build.make modules/conop/pymod/CMakeFiles/_ost_conop.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[4]: Nothing to be done for 'modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build'.
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/conop/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/pymod/CMakeFiles/_ost_conop.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/conop/pymod/CMakeFiles/_ost_conop.dir/build.make modules/conop/pymod/CMakeFiles/_ost_conop.dir/build
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make[4]: Nothing to be done for 'modules/conop/pymod/CMakeFiles/_ost_conop.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 48%] Built target _ost_gfx
+[ 44%] Built target _ost_conop
make -f modules/io/src/CMakeFiles/ost_io.dir/build.make modules/io/src/CMakeFiles/ost_io.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/io/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/src/CMakeFiles/ost_io.dir/DependInfo.cmake "--color="
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/ost_geom_tests.dir/link.d CMakeFiles/ost_geom_tests.dir/test_composite3.cc.o CMakeFiles/ost_geom_tests.dir/test_composite2.cc.o CMakeFiles/ost_geom_tests.dir/test_mat2.cc.o CMakeFiles/ost_geom_tests.dir/test_mat3.cc.o CMakeFiles/ost_geom_tests.dir/test_mat4.cc.o CMakeFiles/ost_geom_tests.dir/test_op2.cc.o CMakeFiles/ost_geom_tests.dir/test_op3.cc.o CMakeFiles/ost_geom_tests.dir/test_op4.cc.o CMakeFiles/ost_geom_tests.dir/test_quat.cc.o CMakeFiles/ost_geom_tests.dir/test_vec2.cc.o CMakeFiles/ost_geom_tests.dir/test_vec3.cc.o CMakeFiles/ost_geom_tests.dir/test_vec4.cc.o CMakeFiles/ost_geom_tests.dir/test_transform.cc.o CMakeFiles/ost_geom_tests.dir/tests.cc.o -o ../../../tests/ost_geom_tests -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib /usr/lib/i386-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 44%] Built target ost_geom_tests
make -f modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build.make modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/DependInfo.cmake "--color="
-[ 48%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_power_spectrum.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_power_spectrum.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_power_spectrum.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_power_spectrum.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/tests/test_power_spectrum.cc
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make -f modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build.make modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make[4]: Nothing to be done for 'modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 49%] Built target _ost_mol_alg
-make -f modules/base/tests/CMakeFiles/ost_base_tests_run.dir/build.make modules/base/tests/CMakeFiles/ost_base_tests_run.dir/depend
+[ 45%] Built target _ost_mol_alg
+make -f modules/geom/tests/CMakeFiles/ost_geom_tests_run.dir/build.make modules/geom/tests/CMakeFiles/ost_geom_tests_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/base/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/tests/CMakeFiles/ost_base_tests_run.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/geom/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/tests/CMakeFiles/ost_geom_tests_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/base/tests/CMakeFiles/ost_base_tests_run.dir/build.make modules/base/tests/CMakeFiles/ost_base_tests_run.dir/build
+make -f modules/geom/tests/CMakeFiles/ost_geom_tests_run.dir/build.make modules/geom/tests/CMakeFiles/ost_geom_tests_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 49%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/tests.cc.o
-[ 49%] running checks for module base
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/base/tests/CMakeFiles/ost_img_tests.dir/tests.cc.o -MF CMakeFiles/ost_img_tests.dir/tests.cc.o.d -o CMakeFiles/ost_img_tests.dir/tests.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/base/tests/tests.cc
-cd /build/reproducible-path/openstructure-2.9.2/modules/base/tests && env OST_ROOT=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/tests/ost_base_tests
-Running 5 test cases...
+[ 45%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_power_spectrum.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_power_spectrum.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_power_spectrum.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_power_spectrum.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/tests/test_power_spectrum.cc
+[ 45%] running checks for module geom
+cd /build/reproducible-path/openstructure-2.9.2/modules/geom/tests && env OST_ROOT=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/tests/ost_geom_tests
+Running 25 test cases...
[1;32;49m*** No errors detected
[0;39;49mmake[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 49%] Built target ost_base_tests_run
-[ 49%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_shift.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_shift.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_shift.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_shift.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/tests/test_shift.cc
+[ 45%] Built target ost_geom_tests_run
+make -f modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build.make modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/depend
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/gfx/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make -f modules/io/src/CMakeFiles/ost_io.dir/build.make modules/io/src/CMakeFiles/ost_io.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make[4]: Nothing to be done for 'modules/io/src/CMakeFiles/ost_io.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 54%] Built target ost_io
+[ 50%] Built target ost_io
make -f modules/gui/src/CMakeFiles/ost_gui.dir/build.make modules/gui/src/CMakeFiles/ost_gui.dir/depend
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build.make modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/gui/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/src/CMakeFiles/ost_gui.dir/DependInfo.cmake "--color="
-[ 54%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_transfer_connectivity.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_transfer_connectivity.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_transfer_connectivity.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_transfer_connectivity.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_transfer_connectivity.cc
-[ 54%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_stat.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_stat.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_stat.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_stat.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/tests/test_stat.cc
-[ 54%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_view_op.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_view_op.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_view_op.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_view_op.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_view_op.cc
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make[4]: Nothing to be done for 'modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/gui/src/CMakeFiles/ost_gui.dir/build.make modules/gui/src/CMakeFiles/ost_gui.dir/build
+[ 52%] Built target _ost_gfx
make -f modules/io/pymod/CMakeFiles/_ost_io.dir/build.make modules/io/pymod/CMakeFiles/_ost_io.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/io/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/pymod/CMakeFiles/_ost_io.dir/DependInfo.cmake "--color="
-[ 54%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/tests.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/tests.cc.o -MF CMakeFiles/ost_mol_tests.dir/tests.cc.o.d -o CMakeFiles/ost_mol_tests.dir/tests.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/tests.cc
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/io/pymod/CMakeFiles/_ost_io.dir/build.make modules/io/pymod/CMakeFiles/_ost_io.dir/build
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make[4]: Nothing to be done for 'modules/io/pymod/CMakeFiles/_ost_io.dir/build'.
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 53%] Built target _ost_io
make -f modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/build.make modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/gfx/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make -f modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/build.make modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/io/pymod/CMakeFiles/_ost_io.dir/build.make modules/io/pymod/CMakeFiles/_ost_io.dir/build
-[ 54%] Building CXX object modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/tests.cc.o
+[ 53%] Building CXX object modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/tests.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/tests.cc.o -MF CMakeFiles/ost_gfx_tests.dir/tests.cc.o.d -o CMakeFiles/ost_gfx_tests.dir/tests.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/tests/tests.cc
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[4]: Nothing to be done for 'modules/io/pymod/CMakeFiles/_ost_io.dir/build'.
+[ 53%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_builder.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_builder.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_builder.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_builder.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_builder.cc
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/gui/src/CMakeFiles/ost_gui.dir/build.make modules/gui/src/CMakeFiles/ost_gui.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make[4]: Nothing to be done for 'modules/gui/src/CMakeFiles/ost_gui.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 55%] Built target _ost_io
+[ 86%] Built target ost_gui
make -f modules/io/tests/CMakeFiles/ost_io_tests.dir/build.make modules/io/tests/CMakeFiles/ost_io_tests.dir/depend
-[ 88%] Built target ost_gui
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/io/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests/CMakeFiles/ost_io_tests.dir/DependInfo.cmake "--color="
-make -f modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/build.make modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/depend
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make -f modules/io/tests/CMakeFiles/ost_io_tests.dir/build.make modules/io/tests/CMakeFiles/ost_io_tests.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 88%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_clustal.cc.o
+[ 86%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_clustal.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_clustal.cc.o -MF CMakeFiles/ost_io_tests.dir/test_clustal.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_clustal.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/tests/test_clustal.cc
+[ 86%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_delete.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_delete.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_delete.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_delete.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_delete.cc
+[ 86%] Building CXX object modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/test_gfx_node.cc.o
+[ 86%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_shift.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/test_gfx_node.cc.o -MF CMakeFiles/ost_gfx_tests.dir/test_gfx_node.cc.o.d -o CMakeFiles/ost_gfx_tests.dir/test_gfx_node.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/tests/test_gfx_node.cc
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_shift.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_shift.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_shift.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/tests/test_shift.cc
+In file included from /usr/include/c++/14/string:54,
+ from /usr/include/boost/test/utils/basic_cstring/bcs_char_traits.hpp:25,
+ from /usr/include/boost/test/utils/basic_cstring/basic_cstring.hpp:21,
+ from /usr/include/boost/test/detail/global_typedef.hpp:15,
+ from /usr/include/boost/test/tools/detail/print_helper.hpp:20,
+ from /usr/include/boost/test/utils/lazy_ostream.hpp:16,
+ from /usr/include/boost/test/tools/context.hpp:19,
+ from /usr/include/boost/test/test_tools.hpp:42,
+ from /usr/include/boost/test/unit_test.hpp:18,
+ from /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_chain.cc:23:
+In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
+ inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:904:15,
+ inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
+ inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
+ inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
+ inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
+ inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
+ inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
+ inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
+ inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
+ inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
+ inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
+ inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:365:38,
+ inlined from 'void mol_base::throw_invalid_chain_handle::test_method()' at /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_chain.cc:114:18:
+/usr/include/c++/14/bits/basic_string.h:1084:16: warning: '((__vector(1) unsigned int*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<24, 4>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<24, 4>::data_)))[1]' may be used uninitialized [-Wmaybe-uninitialized]
+ 1084 | { return _M_string_length; }
+ | ^~~~~~~~~~~~~~~~
+In file included from /usr/include/boost/variant.hpp:17,
+ from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/query.hh:30,
+ from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/entity_handle.hh:26,
+ from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/mol.hh:22,
+ from /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_chain.cc:25:
+/usr/include/boost/variant/variant.hpp: In member function 'void mol_base::throw_invalid_chain_handle::test_method()':
+/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
+ 2107 | variant temp(rhs);
+ | ^~~~
+In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
+ inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:904:15,
+ inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
+ inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
+ inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
+ inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
+ inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
+ inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
+ inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
+ inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
+ inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
+ inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
+ inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:365:38,
+ inlined from 'void mol_base::throw_invalid_chain_handle::test_method()' at /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_chain.cc:114:18:
+/usr/include/c++/14/bits/basic_string.h:1084:16: warning: '((__vector(1) unsigned int*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<24, 4>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<24, 4>::data_)))[2]' may be used uninitialized [-Wmaybe-uninitialized]
+ 1084 | { return _M_string_length; }
+ | ^~~~~~~~~~~~~~~~
+/usr/include/boost/variant/variant.hpp: In member function 'void mol_base::throw_invalid_chain_handle::test_method()':
+/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
+ 2107 | variant temp(rhs);
+ | ^~~~
+[ 86%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_stat.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_stat.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_stat.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_stat.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/tests/test_stat.cc
+[ 86%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_transform.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_transform.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_transform.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_transform.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/tests/test_transform.cc
+[ 86%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_entity.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_entity.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_entity.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_entity.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_entity.cc
+[ 87%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_pdb.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_pdb.cc.o -MF CMakeFiles/ost_io_tests.dir/test_io_pdb.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_io_pdb.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/tests/test_io_pdb.cc
+[ 87%] Building CXX object modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_aligned_column.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_aligned_column.cc.o -MF CMakeFiles/ost_seq_tests.dir/test_aligned_column.cc.o.d -o CMakeFiles/ost_seq_tests.dir/test_aligned_column.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/base/tests/test_aligned_column.cc
+[ 88%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_normalizer.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_normalizer.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_normalizer.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_normalizer.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/tests/test_normalizer.cc
+[ 89%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_ics.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_ics.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_ics.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_ics.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_ics.cc
+[ 89%] Building CXX object modules/conop/tests/CMakeFiles/ost_conop_tests.dir/test_heuristic_conop.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/conop/tests/CMakeFiles/ost_conop_tests.dir/test_heuristic_conop.cc.o -MF CMakeFiles/ost_conop_tests.dir/test_heuristic_conop.cc.o.d -o CMakeFiles/ost_conop_tests.dir/test_heuristic_conop.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/conop/tests/test_heuristic_conop.cc
+[ 89%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/tests.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/tests.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/tests.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/tests.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/tests/tests.cc
+[ 89%] Building CXX object modules/conop/tests/CMakeFiles/ost_conop_tests.dir/tests.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/conop/tests/CMakeFiles/ost_conop_tests.dir/tests.cc.o -MF CMakeFiles/ost_conop_tests.dir/tests.cc.o.d -o CMakeFiles/ost_conop_tests.dir/tests.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/conop/tests/tests.cc
+[ 89%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_crd.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_crd.cc.o -MF CMakeFiles/ost_io_tests.dir/test_io_crd.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_io_crd.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/tests/test_io_crd.cc
+[ 90%] Building CXX object modules/conop/tests/CMakeFiles/ost_conop_tests.dir/test_rule_based_conop.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/conop/tests/CMakeFiles/ost_conop_tests.dir/test_rule_based_conop.cc.o -MF CMakeFiles/ost_conop_tests.dir/test_rule_based_conop.cc.o.d -o CMakeFiles/ost_conop_tests.dir/test_rule_based_conop.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/conop/tests/test_rule_based_conop.cc
+[ 90%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_dcd.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_dcd.cc.o -MF CMakeFiles/ost_io_tests.dir/test_io_dcd.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_io_dcd.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/tests/test_io_dcd.cc
+[ 90%] Linking CXX executable ../../../../tests/ost_img_alg_tests
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_img_alg_tests.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/ost_img_alg_tests.dir/link.d CMakeFiles/ost_img_alg_tests.dir/test_clear.cc.o CMakeFiles/ost_img_alg_tests.dir/test_conj.cc.o CMakeFiles/ost_img_alg_tests.dir/test_convolute.cc.o CMakeFiles/ost_img_alg_tests.dir/test_discrete_shrink.cc.o CMakeFiles/ost_img_alg_tests.dir/test_fft.cc.o CMakeFiles/ost_img_alg_tests.dir/test_fill.cc.o CMakeFiles/ost_img_alg_tests.dir/test_filter.cc.o CMakeFiles/ost_img_alg_tests.dir/test_histogram.cc.o CMakeFiles/ost_img_alg_tests.dir/test_mirror.cc.o CMakeFiles/ost_img_alg_tests.dir/test_negate.cc.o CMakeFiles/ost_img_alg_tests.dir/test_power_spectrum.cc.o CMakeFiles/ost_img_alg_tests.dir/test_shift.cc.o CMakeFiles/ost_img_alg_tests.dir/test_stat.cc.o CMakeFiles/ost_img_alg_tests.dir/test_transform.cc.o CMakeFiles/ost_img_alg_tests.dir/test_normalizer.cc.o CMakeFiles/ost_img_alg_tests.dir/tests.cc.o -o ../../../../tests/ost_img_alg_tests -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib /usr/lib/i386-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../../stage/lib/libost_img_alg.so.2.9.2 /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_img.so.2.9.2 ../../../../stage/lib/libost_info.so.2.9.2 ../../../../stage/lib/libost_base.so.2.9.2 ../../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 90%] Built target ost_img_alg_tests
+make -f modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/build.make modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/depend
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make -f modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/build.make modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 88%] Building CXX object modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/test_superposition.cc.o
+[ 90%] Building CXX object modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/test_superposition.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/test_superposition.cc.o -MF CMakeFiles/ost_mol_alg_tests.dir/test_superposition.cc.o.d -o CMakeFiles/ost_mol_alg_tests.dir/test_superposition.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests/test_superposition.cc
-[ 88%] Building CXX object modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/test_gfx_node.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/test_gfx_node.cc.o -MF CMakeFiles/ost_gfx_tests.dir/test_gfx_node.cc.o.d -o CMakeFiles/ost_gfx_tests.dir/test_gfx_node.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/tests/test_gfx_node.cc
-[ 88%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_transform.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_transform.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_transform.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_transform.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/tests/test_transform.cc
-[ 89%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_normalizer.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_normalizer.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_normalizer.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_normalizer.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/tests/test_normalizer.cc
-[ 89%] Linking CXX executable ../../../../tests/ost_seq_tests
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_seq_tests.dir/link.txt --verbose=1
-[ 89%] Linking CXX executable ../../../../tests/ost_img_tests
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_img_tests.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/ost_seq_tests.dir/link.d CMakeFiles/ost_seq_tests.dir/test_sequence.cc.o CMakeFiles/ost_seq_tests.dir/test_aligned_column.cc.o CMakeFiles/ost_seq_tests.dir/test_aligned_region.cc.o CMakeFiles/ost_seq_tests.dir/test_alignment.cc.o CMakeFiles/ost_seq_tests.dir/test_profile.cc.o CMakeFiles/ost_seq_tests.dir/tests.cc.o -o ../../../../tests/ost_seq_tests -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib /usr/lib/i386-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../../stage/lib/libost_seq.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_iostreams.so.1.83.0 ../../../../stage/lib/libost_mol.so.2.9.2 ../../../../stage/lib/libost_info.so.2.9.2 ../../../../stage/lib/libost_base.so.2.9.2 ../../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15
+[ 90%] Building CXX object modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/test_color.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/test_color.cc.o -MF CMakeFiles/ost_gfx_tests.dir/test_color.cc.o.d -o CMakeFiles/ost_gfx_tests.dir/test_color.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/tests/test_color.cc
+[ 90%] Building CXX object modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_aligned_region.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_aligned_region.cc.o -MF CMakeFiles/ost_seq_tests.dir/test_aligned_region.cc.o.d -o CMakeFiles/ost_seq_tests.dir/test_aligned_region.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/base/tests/test_aligned_region.cc
+[ 90%] Building CXX object modules/conop/tests/CMakeFiles/ost_conop_tests.dir/helper.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/conop/tests/CMakeFiles/ost_conop_tests.dir/helper.cc.o -MF CMakeFiles/ost_conop_tests.dir/helper.cc.o.d -o CMakeFiles/ost_conop_tests.dir/helper.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/conop/tests/helper.cc
+[ 90%] Building CXX object modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_alignment.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_alignment.cc.o -MF CMakeFiles/ost_seq_tests.dir/test_alignment.cc.o.d -o CMakeFiles/ost_seq_tests.dir/test_alignment.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/base/tests/test_alignment.cc
+In file included from /usr/include/c++/14/string:54,
+ from /usr/include/boost/test/utils/basic_cstring/bcs_char_traits.hpp:25,
+ from /usr/include/boost/test/utils/basic_cstring/basic_cstring.hpp:21,
+ from /usr/include/boost/test/detail/global_typedef.hpp:15,
+ from /usr/include/boost/test/tools/detail/print_helper.hpp:20,
+ from /usr/include/boost/test/utils/lazy_ostream.hpp:16,
+ from /usr/include/boost/test/tools/context.hpp:19,
+ from /usr/include/boost/test/test_tools.hpp:42,
+ from /usr/include/boost/test/unit_test.hpp:18,
+ from /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_entity.cc:24:
+In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
+ inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:904:15,
+ inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
+ inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
+ inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
+ inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
+ inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
+ inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
+ inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
+ inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
+ inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
+ inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
+ inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::AtomBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:358:38,
+ inlined from 'void mol_base::minmax::test_method()' at /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_entity.cc:436:20:
+/usr/include/c++/14/bits/basic_string.h:1084:16: warning: '*(const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<24, 4>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<24, 4>::data_)).std::__cxx11::basic_string<char>::_M_string_length' may be used uninitialized [-Wmaybe-uninitialized]
+ 1084 | { return _M_string_length; }
+ | ^~~~~~~~~~~~~~~~
+In file included from /usr/include/boost/variant.hpp:17,
+ from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/query.hh:30,
+ from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/entity_handle.hh:26,
+ from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/mol.hh:22,
+ from /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_entity.cc:27:
+/usr/include/boost/variant/variant.hpp: In member function 'void mol_base::minmax::test_method()':
+/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
+ 2107 | variant temp(rhs);
+ | ^~~~
+In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
+ inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
+ inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
+ inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
+ inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
+ inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
+ inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
+ inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
+ inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
+ inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
+ inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
+ inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::AtomBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:358:38,
+ inlined from 'void mol_base::minmax::test_method()' at /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_entity.cc:436:20:
+/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<24, 4>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<24, 4>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
+ 905 | _M_capacity(__str._M_allocated_capacity);
+ | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/usr/include/boost/variant/variant.hpp: In member function 'void mol_base::minmax::test_method()':
+/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
+ 2107 | variant temp(rhs);
+ | ^~~~
+In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
+ inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
+ inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
+ inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
+ inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
+ inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
+ inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
+ inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
+ inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
+ inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
+ inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
+ inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::AtomBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:358:38,
+ inlined from 'void mol_base::minmax::test_method()' at /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_entity.cc:436:20:
+/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<24, 4>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<24, 4>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
+ 905 | _M_capacity(__str._M_allocated_capacity);
+ | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/usr/include/boost/variant/variant.hpp: In member function 'void mol_base::minmax::test_method()':
+/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
+ 2107 | variant temp(rhs);
+ | ^~~~
+[ 90%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_sdf.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_sdf.cc.o -MF CMakeFiles/ost_io_tests.dir/test_io_sdf.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_io_sdf.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/tests/test_io_sdf.cc
+[ 90%] Building CXX object modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/tests.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/tests.cc.o -MF CMakeFiles/ost_mol_alg_tests.dir/tests.cc.o.d -o CMakeFiles/ost_mol_alg_tests.dir/tests.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests/tests.cc
+In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
+ inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:904:15,
+ inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
+ inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
+ inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
+ inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
+ inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
+ inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
+ inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
+ inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
+ inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
+ inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
+ inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::ChainBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:365:38,
+ inlined from 'void mol_base::entity_creator::test_method()' at /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_entity.cc:140:19:
+/usr/include/c++/14/bits/basic_string.h:1084:16: warning: '((__vector(1) unsigned int*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<24, 4>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<24, 4>::data_)))[1]' may be used uninitialized [-Wmaybe-uninitialized]
+ 1084 | { return _M_string_length; }
+ | ^~~~~~~~~~~~~~~~
+/usr/include/boost/variant/variant.hpp: In member function 'void mol_base::entity_creator::test_method()':
+/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
+ 2107 | variant temp(rhs);
+ | ^~~~
+In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
+ inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:904:15,
+ inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
+ inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
+ inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
+ inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
+ inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
+ inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
+ inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
+ inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
+ inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
+ inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
+ inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::ChainBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:365:38,
+ inlined from 'void mol_base::entity_creator::test_method()' at /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_entity.cc:140:19:
+/usr/include/c++/14/bits/basic_string.h:1084:16: warning: '((__vector(1) unsigned int*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<24, 4>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<24, 4>::data_)))[2]' may be used uninitialized [-Wmaybe-uninitialized]
+ 1084 | { return _M_string_length; }
+ | ^~~~~~~~~~~~~~~~
+/usr/include/boost/variant/variant.hpp: In member function 'void mol_base::entity_creator::test_method()':
+/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
+ 2107 | variant temp(rhs);
+ | ^~~~
+[ 90%] Building CXX object modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/test_consistency_checks.cc.o
+[ 90%] Building CXX object modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/test_map_octree.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/test_consistency_checks.cc.o -MF CMakeFiles/ost_mol_alg_tests.dir/test_consistency_checks.cc.o.d -o CMakeFiles/ost_mol_alg_tests.dir/test_consistency_checks.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests/test_consistency_checks.cc
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/test_map_octree.cc.o -MF CMakeFiles/ost_gfx_tests.dir/test_map_octree.cc.o.d -o CMakeFiles/ost_gfx_tests.dir/test_map_octree.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/tests/test_map_octree.cc
+[ 90%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_sdf_v3000.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_sdf_v3000.cc.o -MF CMakeFiles/ost_io_tests.dir/test_io_sdf_v3000.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_io_sdf_v3000.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/tests/test_io_sdf_v3000.cc
+[ 90%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_sequence_profile.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_sequence_profile.cc.o -MF CMakeFiles/ost_io_tests.dir/test_io_sequence_profile.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_io_sequence_profile.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/tests/test_io_sequence_profile.cc
+[ 91%] Building CXX object modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/test_partial_sec_struct_assignment.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/test_partial_sec_struct_assignment.cc.o -MF CMakeFiles/ost_mol_alg_tests.dir/test_partial_sec_struct_assignment.cc.o.d -o CMakeFiles/ost_mol_alg_tests.dir/test_partial_sec_struct_assignment.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests/test_partial_sec_struct_assignment.cc
+[ 91%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_query.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_query.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_query.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_query.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_query.cc
+[ 91%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_surface.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_surface.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_surface.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_surface.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_surface.cc
+[ 92%] Building CXX object modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_profile.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_profile.cc.o -MF CMakeFiles/ost_seq_tests.dir/test_profile.cc.o.d -o CMakeFiles/ost_seq_tests.dir/test_profile.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/base/tests/test_profile.cc
+[ 92%] Linking CXX executable ../../../tests/ost_gfx_tests
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_gfx_tests.dir/link.txt --verbose=1
+[ 92%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_residue.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_residue.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_residue.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_residue.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_residue.cc
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/ost_gfx_tests.dir/link.d CMakeFiles/ost_gfx_tests.dir/tests.cc.o CMakeFiles/ost_gfx_tests.dir/test_gfx_node.cc.o CMakeFiles/ost_gfx_tests.dir/test_color.cc.o CMakeFiles/ost_gfx_tests.dir/test_map_octree.cc.o -o ../../../tests/ost_gfx_tests -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib /usr/lib/i386-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../stage/lib/libost_gfx.so.2.9.2 ../../../stage/lib/libost_io.so.2.9.2 /usr/lib/i386-linux-gnu/libOpenGL.so /usr/lib/i386-linux-gnu/libGLX.so /usr/lib/i386-linux-gnu/libGLU.so ../../../stage/lib/libost_mol_alg.so.2.9.2 ../../../stage/lib/libost_conop.so.2.9.2 ../../../stage/lib/libost_db.so.2.9.2 /usr/lib/i386-linux-gnu/libsqlite3.so ../../../stage/lib/libost_img_alg.so.2.9.2 ../../../stage/lib/libost_img.so.2.9.2 /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libfftw3f_threads.so /usr/lib/i386-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_thread.so.1.83.0 ../../../stage/lib/libost_seq_alg.so.2.9.2 ../../../stage/lib/libost_seq.so.2.9.2 ../../../stage/lib/libost_mol.so.2.9.2 ../../../stage/lib/libost_info.so.2.9.2 ../../../stage/lib/libost_base.so.2.9.2 ../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/i386-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/i386-linux-gnu/libtiff.so /usr/lib/i386-linux-gnu/libpng.so /usr/lib/i386-linux-gnu/libz.so
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 89%] Built target ost_seq_tests
+[ 92%] Built target ost_gfx_tests
make -f modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/build.make modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make -f modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/build.make modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 89%] Building CXX object modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/test_distance_analysis.cc.o
+[ 92%] Building CXX object modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/test_distance_analysis.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/test_distance_analysis.cc.o -MF CMakeFiles/ost_seq_alg_tests.dir/test_distance_analysis.cc.o.d -o CMakeFiles/ost_seq_alg_tests.dir/test_distance_analysis.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests/test_distance_analysis.cc
+[ 92%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_view.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_view.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_view.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_view.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_view.cc
+[ 92%] Linking CXX executable ../../../../tests/ost_mol_alg_tests
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_mol_alg_tests.dir/link.txt --verbose=1
+[ 93%] Building CXX object modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/test_merge_pairwise_alignments.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/test_merge_pairwise_alignments.cc.o -MF CMakeFiles/ost_seq_alg_tests.dir/test_merge_pairwise_alignments.cc.o.d -o CMakeFiles/ost_seq_alg_tests.dir/test_merge_pairwise_alignments.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests/test_merge_pairwise_alignments.cc
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/ost_mol_alg_tests.dir/link.d CMakeFiles/ost_mol_alg_tests.dir/test_superposition.cc.o CMakeFiles/ost_mol_alg_tests.dir/tests.cc.o CMakeFiles/ost_mol_alg_tests.dir/test_consistency_checks.cc.o CMakeFiles/ost_mol_alg_tests.dir/test_partial_sec_struct_assignment.cc.o -o ../../../../tests/ost_mol_alg_tests -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib /usr/lib/i386-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../../stage/lib/libost_io.so.2.9.2 ../../../../stage/lib/libost_mol_alg.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_thread.so.1.83.0 ../../../../stage/lib/libost_seq_alg.so.2.9.2 ../../../../stage/lib/libost_img_alg.so.2.9.2 ../../../../stage/lib/libost_img.so.2.9.2 /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_conop.so.2.9.2 ../../../../stage/lib/libost_db.so.2.9.2 ../../../../stage/lib/libost_seq.so.2.9.2 ../../../../stage/lib/libost_mol.so.2.9.2 ../../../../stage/lib/libost_info.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/i386-linux-gnu/libsqlite3.so ../../../../stage/lib/libost_base.so.2.9.2 ../../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/i386-linux-gnu/libtiff.so /usr/lib/i386-linux-gnu/libpng.so /usr/lib/i386-linux-gnu/libz.so
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 93%] Built target ost_mol_alg_tests
+[ 93%] Building CXX object modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/tests.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/tests.cc.o -MF CMakeFiles/ost_seq_tests.dir/tests.cc.o.d -o CMakeFiles/ost_seq_tests.dir/tests.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/base/tests/tests.cc
make -f modules/gui/pymod/CMakeFiles/_ost_gui.dir/build.make modules/gui/pymod/CMakeFiles/_ost_gui.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/gui/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gui/pymod/CMakeFiles/_ost_gui.dir/DependInfo.cmake "--color="
-[ 90%] Building CXX object modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/test_merge_pairwise_alignments.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/test_merge_pairwise_alignments.cc.o -MF CMakeFiles/ost_seq_alg_tests.dir/test_merge_pairwise_alignments.cc.o.d -o CMakeFiles/ost_seq_alg_tests.dir/test_merge_pairwise_alignments.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests/test_merge_pairwise_alignments.cc
+[ 93%] Linking CXX executable ../../../tests/ost_conop_tests
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_conop_tests.dir/link.txt --verbose=1
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make -f modules/gui/pymod/CMakeFiles/_ost_gui.dir/build.make modules/gui/pymod/CMakeFiles/_ost_gui.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make[4]: Nothing to be done for 'modules/gui/pymod/CMakeFiles/_ost_gui.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/ost_img_tests.dir/link.d CMakeFiles/ost_img_tests.dir/test_data.cc.o CMakeFiles/ost_img_tests.dir/test_extent.cc.o CMakeFiles/ost_img_tests.dir/test_image.cc.o CMakeFiles/ost_img_tests.dir/test_image_state.cc.o CMakeFiles/ost_img_tests.dir/test_image_state_visitor.cc.o CMakeFiles/ost_img_tests.dir/test_index.cc.o CMakeFiles/ost_img_tests.dir/test_point.cc.o CMakeFiles/ost_img_tests.dir/test_sampling.cc.o CMakeFiles/ost_img_tests.dir/test_domains.cc.o CMakeFiles/ost_img_tests.dir/test_size.cc.o CMakeFiles/ost_img_tests.dir/test_value_holder.cc.o CMakeFiles/ost_img_tests.dir/tests.cc.o -o ../../../../tests/ost_img_tests -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib /usr/lib/i386-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../../stage/lib/libost_img_alg.so.2.9.2 ../../../../stage/lib/libost_img.so.2.9.2 ../../../../stage/lib/libost_info.so.2.9.2 ../../../../stage/lib/libost_base.so.2.9.2 ../../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libfftw3f_threads.so
+[ 95%] Built target _ost_gui
+make -f modules/gfx/tests/CMakeFiles/ost_gfx_tests_run.dir/build.make modules/gfx/tests/CMakeFiles/ost_gfx_tests_run.dir/depend
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/gfx/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/tests/CMakeFiles/ost_gfx_tests_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 92%] Built target _ost_gui
-make -f modules/seq/base/tests/CMakeFiles/ost_seq_tests_run.dir/build.make modules/seq/base/tests/CMakeFiles/ost_seq_tests_run.dir/depend
+make -f modules/gfx/tests/CMakeFiles/ost_gfx_tests_run.dir/build.make modules/gfx/tests/CMakeFiles/ost_gfx_tests_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/seq/base/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/tests/CMakeFiles/ost_seq_tests_run.dir/DependInfo.cmake "--color="
-[ 92%] Built target ost_img_tests
-make -f scripts/CMakeFiles/ost_scripts.dir/build.make scripts/CMakeFiles/ost_scripts.dir/depend
+[ 95%] running checks for module gfx
+cd /build/reproducible-path/openstructure-2.9.2/modules/gfx/tests && env OST_ROOT=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/tests/ost_gfx_tests
+Running 13 test cases...
+
+[1;32;49m*** No errors detected
+[0;39;49mmake[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 95%] Built target ost_gfx_tests_run
+[ 95%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_transfer_connectivity.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_transfer_connectivity.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_transfer_connectivity.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_transfer_connectivity.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_transfer_connectivity.cc
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/ost_conop_tests.dir/link.d CMakeFiles/ost_conop_tests.dir/test_amino_acids.cc.o CMakeFiles/ost_conop_tests.dir/test_heuristic_conop.cc.o CMakeFiles/ost_conop_tests.dir/tests.cc.o CMakeFiles/ost_conop_tests.dir/test_rule_based_conop.cc.o CMakeFiles/ost_conop_tests.dir/helper.cc.o -o ../../../tests/ost_conop_tests -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib /usr/lib/i386-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../stage/lib/libost_conop.so.2.9.2 ../../../stage/lib/libost_db.so.2.9.2 /usr/lib/i386-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.9.2 ../../../stage/lib/libost_mol.so.2.9.2 ../../../stage/lib/libost_info.so.2.9.2 ../../../stage/lib/libost_base.so.2.9.2 ../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/i386-linux-gnu/libboost_iostreams.so.1.83.0
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 95%] Built target ost_conop_tests
+make -f modules/img/alg/tests/CMakeFiles/ost_img_alg_tests_run.dir/build.make modules/img/alg/tests/CMakeFiles/ost_img_alg_tests_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/scripts /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/scripts /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/scripts/CMakeFiles/ost_scripts.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/img/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/tests/CMakeFiles/ost_img_alg_tests_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/seq/base/tests/CMakeFiles/ost_seq_tests_run.dir/build.make modules/seq/base/tests/CMakeFiles/ost_seq_tests_run.dir/build
+make -f modules/img/alg/tests/CMakeFiles/ost_img_alg_tests_run.dir/build.make modules/img/alg/tests/CMakeFiles/ost_img_alg_tests_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 92%] running checks for module seq
-cd /build/reproducible-path/openstructure-2.9.2/modules/seq/base/tests && env OST_ROOT=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/tests/ost_seq_tests
+[ 95%] running checks for module img_alg
+cd /build/reproducible-path/openstructure-2.9.2/modules/img/alg/tests && env OST_ROOT=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/tests/ost_img_alg_tests
+Running 25 test cases...
+
+[1;32;49m*** No errors detected
+[0;39;49mmake[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 95%] Built target ost_img_alg_tests_run
+make -f modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests_run.dir/build.make modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests_run.dir/depend
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests_run.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests_run.dir/build.make modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests_run.dir/build
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 95%] running checks for module mol_alg
+cd /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests && env OST_ROOT=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/tests/ost_mol_alg_tests
+make -f scripts/CMakeFiles/ost_scripts.dir/build.make scripts/CMakeFiles/ost_scripts.dir/depend
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/scripts /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/scripts /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/scripts/CMakeFiles/ost_scripts.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make -f scripts/CMakeFiles/ost_scripts.dir/build.make scripts/CMakeFiles/ost_scripts.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different ost_config /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/openstructure/libexec/ost_config
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different ost /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/bin/ost
+Running 4 test cases...
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different dng /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/bin/dng
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different ost_startup.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/ost_startup.py
+
+[1;32;49m*** No errors detected
+[0;39;49mcd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different ost_startup.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/ost_startup.py
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 95%] Built target ost_mol_alg_tests_run
+make -f modules/conop/tests/CMakeFiles/ost_conop_tests_run.dir/build.make modules/conop/tests/CMakeFiles/ost_conop_tests_run.dir/depend
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/conop/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/tests/CMakeFiles/ost_conop_tests_run.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.9.2/scripts/dng_startup.py /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages//ost/dng_startup.py
-Running 32 test cases...
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/conop/tests/CMakeFiles/ost_conop_tests_run.dir/build.make modules/conop/tests/CMakeFiles/ost_conop_tests_run.dir/build
+[ 95%] Built target ost_scripts
+make -f modules/seq/alg/tests/CMakeFiles/test_aaindex.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_aaindex.py_run.dir/depend
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/tests/CMakeFiles/test_aaindex.py_run.dir/DependInfo.cmake "--color="
+[ 95%] running checks for module conop
+cd /build/reproducible-path/openstructure-2.9.2/modules/conop/tests && env OST_ROOT=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/tests/ost_conop_tests
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/seq/alg/tests/CMakeFiles/test_aaindex.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_aaindex.py_run.dir/build
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+Running 18 test cases...
+unable to open database file
+unable to open database file
+unable to open database file
+unable to open database file
+unable to open database file
+unable to open database file
+unable to open database file
+unable to open database file
+unable to open database file
[1;32;49m*** No errors detected
[0;39;49mmake[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 95%] running checks test_aaindex.py
+cd /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests/test_aaindex.py"
+[ 95%] Built target ost_conop_tests_run
+make -f modules/base/tests/CMakeFiles/test_stutil.py_run.dir/build.make modules/base/tests/CMakeFiles/test_stutil.py_run.dir/depend
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/base/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/tests/CMakeFiles/test_stutil.py_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 92%] Built target ost_scripts
-[ 92%] Built target ost_seq_tests_run
-[ 92%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/tests.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/tests.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/tests.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/tests.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/img/alg/tests/tests.cc
-[ 92%] Building CXX object modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/test_sequence_identity.cc.o
+make -f modules/base/tests/CMakeFiles/test_stutil.py_run.dir/build.make modules/base/tests/CMakeFiles/test_stutil.py_run.dir/build
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 95%] running checks test_stutil.py
+cd /build/reproducible-path/openstructure-2.9.2/modules/base/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/base/tests/test_stutil.py"
+Compound library not available. Some functionality may not work as expected.
+Compound library not available. Some functionality may not work as expected.
+......
+----------------------------------------------------------------------
+Ran 6 tests in 0.001s
+
+OK
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 95%] Built target test_stutil.py_run
+make -f modules/base/tests/CMakeFiles/test_table.py_run.dir/build.make modules/base/tests/CMakeFiles/test_table.py_run.dir/depend
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/base/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/tests/CMakeFiles/test_table.py_run.dir/DependInfo.cmake "--color="
+.
+----------------------------------------------------------------------
+Ran 1 test in 0.284s
+
+OK
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/base/tests/CMakeFiles/test_table.py_run.dir/build.make modules/base/tests/CMakeFiles/test_table.py_run.dir/build
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 95%] Built target test_aaindex.py_run
+[ 95%] running checks test_table.py
+cd /build/reproducible-path/openstructure-2.9.2/modules/base/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/base/tests/test_table.py"
+make -f modules/base/tests/CMakeFiles/test_log.py_run.dir/build.make modules/base/tests/CMakeFiles/test_log.py_run.dir/depend
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/base/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/tests/CMakeFiles/test_log.py_run.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/base/tests/CMakeFiles/test_log.py_run.dir/build.make modules/base/tests/CMakeFiles/test_log.py_run.dir/build
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 95%] running checks test_log.py
+cd /build/reproducible-path/openstructure-2.9.2/modules/base/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/base/tests/test_log.py"
+Compound library not available. Some functionality may not work as expected.
+Compound library not available. Some functionality may not work as expected.
+....
+----------------------------------------------------------------------
+Ran 4 tests in 0.002s
+
+OK
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 95%] Built target test_log.py_run
+make -f modules/bindings/tests/CMakeFiles/test_msms.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_msms.py_run.dir/depend
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/tests/CMakeFiles/test_msms.py_run.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/bindings/tests/CMakeFiles/test_msms.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_msms.py_run.dir/build
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 95%] running checks test_msms.py
+cd /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests/test_msms.py"
+Compound library not available. Some functionality may not work as expected.
+[ 95%] Linking CXX executable ../../../../tests/ost_seq_tests
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_seq_tests.dir/link.txt --verbose=1
+Could not find msms executable: ignoring unit tests
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 95%] Built target test_msms.py_run
+make -f modules/bindings/tests/CMakeFiles/test_clustalw.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_clustalw.py_run.dir/depend
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/tests/CMakeFiles/test_clustalw.py_run.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/bindings/tests/CMakeFiles/test_clustalw.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_clustalw.py_run.dir/build
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 95%] running checks test_clustalw.py
+cd /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests/test_clustalw.py"
+[ 95%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_pir.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_pir.cc.o -MF CMakeFiles/ost_io_tests.dir/test_pir.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_pir.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/tests/test_pir.cc
+Compound library not available. Some functionality may not work as expected.
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/ost_seq_tests.dir/link.d CMakeFiles/ost_seq_tests.dir/test_sequence.cc.o CMakeFiles/ost_seq_tests.dir/test_aligned_column.cc.o CMakeFiles/ost_seq_tests.dir/test_aligned_region.cc.o CMakeFiles/ost_seq_tests.dir/test_alignment.cc.o CMakeFiles/ost_seq_tests.dir/test_profile.cc.o CMakeFiles/ost_seq_tests.dir/tests.cc.o -o ../../../../tests/ost_seq_tests -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib /usr/lib/i386-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../../stage/lib/libost_seq.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_iostreams.so.1.83.0 ../../../../stage/lib/libost_mol.so.2.9.2 ../../../../stage/lib/libost_info.so.2.9.2 ../../../../stage/lib/libost_base.so.2.9.2 ../../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 95%] Built target ost_seq_tests
+make -f modules/bindings/tests/CMakeFiles/test_hhblits.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_hhblits.py_run.dir/depend
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/tests/CMakeFiles/test_hhblits.py_run.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/bindings/tests/CMakeFiles/test_hhblits.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_hhblits.py_run.dir/build
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 95%] running checks test_hhblits.py
+cd /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests/test_hhblits.py"
+Compound library not available. Some functionality may not work as expected.
+No HHblits installation found: skip unit tests
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 95%] Built target test_hhblits.py_run
+make -f modules/bindings/tests/CMakeFiles/test_blast.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_blast.py_run.dir/depend
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/tests/CMakeFiles/test_blast.py_run.dir/DependInfo.cmake "--color="
+Could not find clustalw executable: ignoring unit tests
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/bindings/tests/CMakeFiles/test_blast.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_blast.py_run.dir/build
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 95%] running checks test_blast.py
+[ 95%] Built target test_clustalw.py_run
+make -f modules/bindings/tests/CMakeFiles/test_kclust.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_kclust.py_run.dir/depend
+cd /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests/test_blast.py"
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/tests/CMakeFiles/test_kclust.py_run.dir/DependInfo.cmake "--color="
+...../build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ost/table.py:2696: DeprecationWarning: `trapz` is deprecated. Use `trapezoid` instead, or one of the numerical integration functions in `scipy.integrate`.
+ return np.trapz(enr[1], enr[0])
+../build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ost/table.py:2807: DeprecationWarning: `trapz` is deprecated. Use `trapezoid` instead, or one of the numerical integration functions in `scipy.integrate`.
+ return np.trapz(roc[1], roc[0])
+........../build/reproducible-path/openstructure-2.9.2/modules/bindings/tests/test_blast.py:81: SyntaxWarning: invalid escape sequence '\d'
+ re_v = re.compile('\d+\.\d+\.\d+')
+......make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/bindings/tests/CMakeFiles/test_kclust.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_kclust.py_run.dir/build
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 95%] running checks test_kclust.py
+cd /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests/test_kclust.py"
+Compound library not available. Some functionality may not work as expected.
+Compound library not available. Some functionality may not work as expected.
+Could not find kClust executable: ignoring unit tests
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 95%] Built target test_kclust.py_run
+Could not find blast executable: ignoring unit tests
+make -f modules/bindings/tests/CMakeFiles/test_naccess.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_naccess.py_run.dir/depend
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/tests/CMakeFiles/test_naccess.py_run.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/bindings/tests/CMakeFiles/test_naccess.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_naccess.py_run.dir/build
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 95%] running checks test_naccess.py
+cd /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests/test_naccess.py"
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 95%] Built target test_blast.py_run
+make -f modules/bindings/tests/CMakeFiles/test_cadscore.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_cadscore.py_run.dir/depend
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/tests/CMakeFiles/test_cadscore.py_run.dir/DependInfo.cmake "--color="
+Compound library not available. Some functionality may not work as expected.
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/bindings/tests/CMakeFiles/test_cadscore.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_cadscore.py_run.dir/build
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 95%] running checks test_cadscore.py
+cd /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests/test_cadscore.py"
+Could not find NACCESS, could not test binding...
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 95%] Built target test_naccess.py_run
+make -f modules/bindings/tests/CMakeFiles/test_tmtools.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_tmtools.py_run.dir/depend
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/tests/CMakeFiles/test_tmtools.py_run.dir/DependInfo.cmake "--color="
+Compound library not available. Some functionality may not work as expected.
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/bindings/tests/CMakeFiles/test_tmtools.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_tmtools.py_run.dir/build
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 95%] running checks test_tmtools.py
+cd /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests/test_tmtools.py"
+Compound library not available. Some functionality may not work as expected.
+..s[ 95%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_iomanager.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_iomanager.cc.o -MF CMakeFiles/ost_io_tests.dir/test_iomanager.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_iomanager.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/tests/test_iomanager.cc
+.
+----------------------------------------------------------------------
+Ran 3 tests in 1.071s
+
+OK
+Could not find tmalign executable: ignoring unit tests
+Could not find tmalign executable: ignoring unit tests
+....make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+./build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ost/table.py:2807: DeprecationWarning: `trapz` is deprecated. Use `trapezoid` instead, or one of the numerical integration functions in `scipy.integrate`.
+ return np.trapz(roc[1], roc[0])
+..........[ 95%] Built target test_tmtools.py_run
+make -f modules/bindings/tests/CMakeFiles/test_ialign.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_ialign.py_run.dir/depend
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/tests/CMakeFiles/test_ialign.py_run.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/bindings/tests/CMakeFiles/test_ialign.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_ialign.py_run.dir/build
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 95%] running checks test_ialign.py
+cd /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests/test_ialign.py"
+Compound library not available. Some functionality may not work as expected.
+/usr/lib/python3.13/unittest/case.py:606: ResourceWarning: unclosed file <_io.BufferedReader name='testfiles/enrichment-out.png'>
+ if method() is not None:
+ResourceWarning: Enable tracemalloc to get the object allocation traceback
+..
+----------------------------------------------------------------------
+Ran 1 test in 0.067s
+
+OK
+Could not find ialign master perl script: ignoring unit tests
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 95%] Built target test_ialign.py_run
+make -f modules/bindings/tests/CMakeFiles/test_lga.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_lga.py_run.dir/depend
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/tests/CMakeFiles/test_lga.py_run.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/bindings/tests/CMakeFiles/test_lga.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_lga.py_run.dir/build
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 95%] running checks test_lga.py
+cd /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests/test_lga.py"
+Compound library not available. Some functionality may not work as expected.
+.
+----------------------------------------------------------------------
+Ran 1 test in 0.092s
+
+OK
+Could not find lga executable: ignoring unit tests
+.make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 95%] Built target test_lga.py_run
+make -f modules/bindings/tests/CMakeFiles/test_hbplus.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_hbplus.py_run.dir/depend
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/tests/CMakeFiles/test_hbplus.py_run.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/bindings/tests/CMakeFiles/test_hbplus.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_hbplus.py_run.dir/build
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+/usr/lib/python3.13/unittest/case.py:606: ResourceWarning: unclosed file <_io.BufferedReader name='testfiles/roc-out.png'>
+ if method() is not None:
+ResourceWarning: Enable tracemalloc to get the object allocation traceback
+.[ 95%] running checks test_hbplus.py
+cd /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests/test_hbplus.py"
+Compound library not available. Some functionality may not work as expected.
+/usr/lib/python3.13/unittest/case.py:606: ResourceWarning: unclosed file <_io.BufferedReader name='testfiles/roc-same-val-out.png'>
+ if method() is not None:
+ResourceWarning: Enable tracemalloc to get the object allocation traceback
+..........................................
+----------------------------------------------------------------------
+Ran 83 tests in 6.741s
+
+OK
+Could not find hbplus, could not test binding...
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 95%] Built target test_hbplus.py_run
+make -f modules/bindings/tests/CMakeFiles/test_dockq.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_dockq.py_run.dir/depend
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/tests/CMakeFiles/test_dockq.py_run.dir/DependInfo.cmake "--color="
+[ 95%] Built target test_table.py_run
+make -f modules/conop/tests/CMakeFiles/test_processor.py_run.dir/build.make modules/conop/tests/CMakeFiles/test_processor.py_run.dir/depend
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/conop/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/tests/CMakeFiles/test_processor.py_run.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/bindings/tests/CMakeFiles/test_dockq.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_dockq.py_run.dir/build
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 95%] running checks test_dockq.py
+cd /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests/test_dockq.py"
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/conop/tests/CMakeFiles/test_processor.py_run.dir/build.make modules/conop/tests/CMakeFiles/test_processor.py_run.dir/build
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 96%] running checks test_processor.py
+cd /build/reproducible-path/openstructure-2.9.2/modules/conop/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/conop/tests/test_processor.py"
+Compound library not available. Some functionality may not work as expected.
+Compound library not available. Some functionality may not work as expected.
+Could not find DockQ.py, could not test binding...
+.
+----------------------------------------------------------------------
+Ran 1 test in 0.001s
+
+OK
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 96%] Built target test_dockq.py_run
+make -f modules/conop/tests/CMakeFiles/test_complib.py_run.dir/build.make modules/conop/tests/CMakeFiles/test_complib.py_run.dir/depend
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/conop/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/tests/CMakeFiles/test_complib.py_run.dir/DependInfo.cmake "--color="
+[ 96%] Built target test_processor.py_run
+make -f modules/db/tests/CMakeFiles/test_linear_db.py_run.dir/build.make modules/db/tests/CMakeFiles/test_linear_db.py_run.dir/depend
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/db/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/tests/CMakeFiles/test_linear_db.py_run.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/conop/tests/CMakeFiles/test_complib.py_run.dir/build.make modules/conop/tests/CMakeFiles/test_complib.py_run.dir/build
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/db/tests/CMakeFiles/test_linear_db.py_run.dir/build.make modules/db/tests/CMakeFiles/test_linear_db.py_run.dir/build
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 96%] running checks test_complib.py
+cd /build/reproducible-path/openstructure-2.9.2/modules/conop/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/conop/tests/test_complib.py"
+[ 96%] running checks test_linear_db.py
+cd /build/reproducible-path/openstructure-2.9.2/modules/db/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/db/tests/test_linear_db.py"
+Compound library not available. Some functionality may not work as expected.
+Compound library not available. Some functionality may not work as expected.
+...
+----------------------------------------------------------------------
+Ran 3 tests in 0.006s
+
+OK
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 96%] Built target test_linear_db.py_run
+make -f modules/geom/tests/CMakeFiles/test_geom.py_run.dir/build.make modules/geom/tests/CMakeFiles/test_geom.py_run.dir/depend
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/geom/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/tests/CMakeFiles/test_geom.py_run.dir/DependInfo.cmake "--color="
+[ 96%] Building CXX object modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/test_sequence_identity.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/test_sequence_identity.cc.o -MF CMakeFiles/ost_seq_alg_tests.dir/test_sequence_identity.cc.o.d -o CMakeFiles/ost_seq_alg_tests.dir/test_sequence_identity.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests/test_sequence_identity.cc
-[ 92%] Building CXX object modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/tests.cc.o
+../build/reproducible-path/openstructure-2.9.2/modules/conop/tests/test_complib.py:71: UserWarning: Compound library not available. Some functionality may not work as expected.
+ warnings.warn("Compound library not available. Some functionality may not work as expected.")
+.make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/geom/tests/CMakeFiles/test_geom.py_run.dir/build.make modules/geom/tests/CMakeFiles/test_geom.py_run.dir/build
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 96%] running checks test_geom.py
+cd /build/reproducible-path/openstructure-2.9.2/modules/geom/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/geom/tests/test_geom.py"
+.[ 96%] Building CXX object modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/tests.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/tests.cc.o -MF CMakeFiles/ost_seq_alg_tests.dir/tests.cc.o.d -o CMakeFiles/ost_seq_alg_tests.dir/tests.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests/tests.cc
-make -f modules/img/base/tests/CMakeFiles/ost_img_tests_run.dir/build.make modules/img/base/tests/CMakeFiles/ost_img_tests_run.dir/depend
+....
+----------------------------------------------------------------------
+Ran 8 tests in 0.496s
+
+OK
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 96%] Built target test_complib.py_run
+make -f modules/gfx/tests/CMakeFiles/test_gfx.py_run.dir/build.make modules/gfx/tests/CMakeFiles/test_gfx.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/img/base/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/base/tests/CMakeFiles/ost_img_tests_run.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/gfx/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/tests/CMakeFiles/test_gfx.py_run.dir/DependInfo.cmake "--color="
+Compound library not available. Some functionality may not work as expected.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/img/base/tests/CMakeFiles/ost_img_tests_run.dir/build.make modules/img/base/tests/CMakeFiles/ost_img_tests_run.dir/build
+make -f modules/gfx/tests/CMakeFiles/test_gfx.py_run.dir/build.make modules/gfx/tests/CMakeFiles/test_gfx.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 92%] running checks for module img
-cd /build/reproducible-path/openstructure-2.9.2/modules/img/base/tests && env OST_ROOT=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/tests/ost_img_tests
-Running 44 test cases...
+[ 96%] running checks test_gfx.py
+cd /build/reproducible-path/openstructure-2.9.2/modules/gfx/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/gfx/tests/test_gfx.py"
+........
+----------------------------------------------------------------------
+Ran 8 tests in 0.005s
-[1;32;49m*** No errors detected
-[0;39;49mmake[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 92%] Built target ost_img_tests_run
+OK
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+Compound library not available. Some functionality may not work as expected.
+[ 96%] Built target test_geom.py_run
make -f modules/io/tests/CMakeFiles/test_io_pdb.py_run.dir/build.make modules/io/tests/CMakeFiles/test_io_pdb.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/io/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests/CMakeFiles/test_io_pdb.py_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make -f modules/io/tests/CMakeFiles/test_io_pdb.py_run.dir/build.make modules/io/tests/CMakeFiles/test_io_pdb.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 92%] Building CXX object modules/conop/tests/CMakeFiles/ost_conop_tests.dir/test_heuristic_conop.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/conop/tests/CMakeFiles/ost_conop_tests.dir/test_heuristic_conop.cc.o -MF CMakeFiles/ost_conop_tests.dir/test_heuristic_conop.cc.o.d -o CMakeFiles/ost_conop_tests.dir/test_heuristic_conop.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/conop/tests/test_heuristic_conop.cc
-[ 92%] running checks test_io_pdb.py
+[ 96%] running checks test_io_pdb.py
cd /build/reproducible-path/openstructure-2.9.2/modules/io/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/io/tests/test_io_pdb.py"
-Compound library not available. Some functionality may not work as expected.
-....s
+......
----------------------------------------------------------------------
-Ran 5 tests in 0.619s
+Ran 6 tests in 0.020s
-OK (skipped=1)
+OK
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 92%] Building CXX object modules/conop/tests/CMakeFiles/ost_conop_tests.dir/tests.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/conop/tests/CMakeFiles/ost_conop_tests.dir/tests.cc.o -MF CMakeFiles/ost_conop_tests.dir/tests.cc.o.d -o CMakeFiles/ost_conop_tests.dir/tests.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/conop/tests/tests.cc
-[ 92%] Built target test_io_pdb.py_run
+[ 96%] Built target test_gfx.py_run
make -f modules/io/tests/CMakeFiles/test_io_mmcif.py_run.dir/build.make modules/io/tests/CMakeFiles/test_io_mmcif.py_run.dir/depend
+Compound library not available. Some functionality may not work as expected.
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/io/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests/CMakeFiles/test_io_mmcif.py_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make -f modules/io/tests/CMakeFiles/test_io_mmcif.py_run.dir/build.make modules/io/tests/CMakeFiles/test_io_mmcif.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 92%] running checks test_io_mmcif.py
+[ 96%] running checks test_io_mmcif.py
cd /build/reproducible-path/openstructure-2.9.2/modules/io/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/io/tests/test_io_mmcif.py"
-[ 93%] Building CXX object modules/conop/tests/CMakeFiles/ost_conop_tests.dir/test_rule_based_conop.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/conop/tests/CMakeFiles/ost_conop_tests.dir/test_rule_based_conop.cc.o -MF CMakeFiles/ost_conop_tests.dir/test_rule_based_conop.cc.o.d -o CMakeFiles/ost_conop_tests.dir/test_rule_based_conop.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/conop/tests/test_rule_based_conop.cc
+....s
+----------------------------------------------------------------------
+Ran 5 tests in 0.013s
+
+OK (skipped=1)
Compound library not available. Some functionality may not work as expected.
-[ 93%] Building CXX object modules/conop/tests/CMakeFiles/ost_conop_tests.dir/helper.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/conop/tests/CMakeFiles/ost_conop_tests.dir/helper.cc.o -MF CMakeFiles/ost_conop_tests.dir/helper.cc.o.d -o CMakeFiles/ost_conop_tests.dir/helper.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/conop/tests/helper.cc
-[ 93%] Building CXX object modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/test_color.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/test_color.cc.o -MF CMakeFiles/ost_gfx_tests.dir/test_color.cc.o.d -o CMakeFiles/ost_gfx_tests.dir/test_color.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/tests/test_color.cc
-[ 94%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_pdb.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_pdb.cc.o -MF CMakeFiles/ost_io_tests.dir/test_io_pdb.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_io_pdb.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/tests/test_io_pdb.cc
-[ 94%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_crd.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_crd.cc.o -MF CMakeFiles/ost_io_tests.dir/test_io_crd.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_io_crd.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/tests/test_io_crd.cc
-[ 94%] Building CXX object modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/test_map_octree.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/test_map_octree.cc.o -MF CMakeFiles/ost_gfx_tests.dir/test_map_octree.cc.o.d -o CMakeFiles/ost_gfx_tests.dir/test_map_octree.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/gfx/tests/test_map_octree.cc
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 96%] Built target test_io_pdb.py_run
+make -f modules/io/tests/CMakeFiles/test_io_omf.py_run.dir/build.make modules/io/tests/CMakeFiles/test_io_omf.py_run.dir/depend
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/io/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests/CMakeFiles/test_io_omf.py_run.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/io/tests/CMakeFiles/test_io_omf.py_run.dir/build.make modules/io/tests/CMakeFiles/test_io_omf.py_run.dir/build
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 96%] running checks test_io_omf.py
+cd /build/reproducible-path/openstructure-2.9.2/modules/io/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/io/tests/test_io_omf.py"
+Compound library not available. Some functionality may not work as expected.
+No compound library available. Ignoring test_stereochemistry.py tests.
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
.No citation for identifier '1' found. Couldn't set author list.
SEQRES requires a valid compound library to handle non standard compounds. Their One letter codes will be set to X.
-..In file included from /usr/include/c++/14/string:54,
- from /usr/include/boost/test/utils/basic_cstring/bcs_char_traits.hpp:25,
- from /usr/include/boost/test/utils/basic_cstring/basic_cstring.hpp:21,
- from /usr/include/boost/test/detail/global_typedef.hpp:15,
- from /usr/include/boost/test/tools/detail/print_helper.hpp:20,
- from /usr/include/boost/test/utils/lazy_ostream.hpp:16,
- from /usr/include/boost/test/tools/context.hpp:19,
- from /usr/include/boost/test/test_tools.hpp:42,
- from /usr/include/boost/test/unit_test.hpp:18,
- from /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_chain.cc:23:
-In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
- inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:904:15,
- inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
- inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
- inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
- inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
- inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
- inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
- inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
- inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
- inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
- inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
- inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:365:38,
- inlined from 'void mol_base::throw_invalid_chain_handle::test_method()' at /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_chain.cc:114:18:
-/usr/include/c++/14/bits/basic_string.h:1084:16: warning: '((__vector(1) unsigned int*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<24, 4>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<24, 4>::data_)))[1]' may be used uninitialized [-Wmaybe-uninitialized]
- 1084 | { return _M_string_length; }
- | ^~~~~~~~~~~~~~~~
-In file included from /usr/include/boost/variant.hpp:17,
- from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/query.hh:30,
- from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/entity_handle.hh:26,
- from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/mol.hh:22,
- from /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_chain.cc:25:
-/usr/include/boost/variant/variant.hpp: In member function 'void mol_base::throw_invalid_chain_handle::test_method()':
-/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
- 2107 | variant temp(rhs);
- | ^~~~
-In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
- inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:904:15,
- inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
- inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
- inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
- inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
- inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
- inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
- inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
- inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
- inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
- inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
- inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:365:38,
- inlined from 'void mol_base::throw_invalid_chain_handle::test_method()' at /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_chain.cc:114:18:
-/usr/include/c++/14/bits/basic_string.h:1084:16: warning: '((__vector(1) unsigned int*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<24, 4>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<24, 4>::data_)))[2]' may be used uninitialized [-Wmaybe-uninitialized]
- 1084 | { return _M_string_length; }
- | ^~~~~~~~~~~~~~~~
-/usr/include/boost/variant/variant.hpp: In member function 'void mol_base::throw_invalid_chain_handle::test_method()':
-/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
- 2107 | variant temp(rhs);
- | ^~~~
+..[ 96%] Built target test_io_omf.py_run
+make -f modules/io/tests/CMakeFiles/test_io_sdf.py_run.dir/build.make modules/io/tests/CMakeFiles/test_io_sdf.py_run.dir/depend
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/io/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests/CMakeFiles/test_io_sdf.py_run.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/io/tests/CMakeFiles/test_io_sdf.py_run.dir/build.make modules/io/tests/CMakeFiles/test_io_sdf.py_run.dir/build
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 96%] running checks test_io_sdf.py
+cd /build/reproducible-path/openstructure-2.9.2/modules/io/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/io/tests/test_io_sdf.py"
+SEQRES requires a valid compound library to handle non standard compounds. Their One letter codes will be set to X.
+Compound library not available. Some functionality may not work as expected.
+.....
+----------------------------------------------------------------------
+Ran 5 tests in 0.020s
+
+OK
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 96%] Built target test_io_sdf.py_run
+make -f modules/mol/base/tests/CMakeFiles/test_invalid.py_run.dir/build.make modules/mol/base/tests/CMakeFiles/test_invalid.py_run.dir/depend
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/tests/CMakeFiles/test_invalid.py_run.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/mol/base/tests/CMakeFiles/test_invalid.py_run.dir/build.make modules/mol/base/tests/CMakeFiles/test_invalid.py_run.dir/build
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 97%] running checks test_invalid.py
+cd /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_invalid.py"
+Compound library not available. Some functionality may not work as expected.
+.......
+----------------------------------------------------------------------
+Ran 7 tests in 0.019s
+
+OK
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 97%] Built target test_invalid.py_run
+make -f modules/mol/alg/tests/CMakeFiles/test_pdbize.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_pdbize.py_run.dir/depend
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_pdbize.py_run.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/mol/alg/tests/CMakeFiles/test_pdbize.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_pdbize.py_run.dir/build
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/mol/alg/tests/CMakeFiles/test_convenient_superpose.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_convenient_superpose.py_run.dir/depend
+[ 97%] running checks test_pdbize.py
+cd /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests/test_pdbize.py"
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_convenient_superpose.py_run.dir/DependInfo.cmake "--color="
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/mol/alg/tests/CMakeFiles/test_convenient_superpose.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_convenient_superpose.py_run.dir/build
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+Compound library not available. Some functionality may not work as expected.
+[ 97%] running checks test_convenient_superpose.py
+cd /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests/test_convenient_superpose.py"
+Compound library not available. Some functionality may not work as expected.
+.........
+----------------------------------------------------------------------
+Ran 8 tests in 0.026s
+
+OK
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 97%] Built target test_pdbize.py_run
+make -f modules/mol/alg/tests/CMakeFiles/test_hbond.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_hbond.py_run.dir/depend
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_hbond.py_run.dir/DependInfo.cmake "--color="
SEQRES requires a valid compound library to handle non standard compounds. Their One letter codes will be set to X.
-[ 94%] Building CXX object modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/tests.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/tests.cc.o -MF CMakeFiles/ost_mol_alg_tests.dir/tests.cc.o.d -o CMakeFiles/ost_mol_alg_tests.dir/tests.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests/tests.cc
-.SEQRES requires a valid compound library to handle non standard compounds. Their One letter codes will be set to X.
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
@@ -23863,754 +24489,314 @@
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
-.SEQRES requires a valid compound library to handle non standard compounds. Their One letter codes will be set to X.
-No SEQRES found for chain 'A'. Most likely the entity_poly_seq category was missing from the input file.
-No SEQRES found for chain 'B'. Most likely the entity_poly_seq category was missing from the input file.
-No SEQRES found for chain 'C'. Most likely the entity_poly_seq category was missing from the input file.
-......s
-----------------------------------------------------------------------
-Ran 12 tests in 3.596s
-
-OK (skipped=1)
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 94%] Built target test_io_mmcif.py_run
-make -f modules/io/tests/CMakeFiles/test_io_omf.py_run.dir/build.make modules/io/tests/CMakeFiles/test_io_omf.py_run.dir/depend
-make -f modules/io/tests/CMakeFiles/test_io_sdf.py_run.dir/build.make modules/io/tests/CMakeFiles/test_io_sdf.py_run.dir/depend
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/io/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests/CMakeFiles/test_io_omf.py_run.dir/DependInfo.cmake "--color="
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/io/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests/CMakeFiles/test_io_sdf.py_run.dir/DependInfo.cmake "--color="
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/io/tests/CMakeFiles/test_io_omf.py_run.dir/build.make modules/io/tests/CMakeFiles/test_io_omf.py_run.dir/build
-make -f modules/io/tests/CMakeFiles/test_io_sdf.py_run.dir/build.make modules/io/tests/CMakeFiles/test_io_sdf.py_run.dir/build
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 94%] running checks test_io_omf.py
-cd /build/reproducible-path/openstructure-2.9.2/modules/io/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/io/tests/test_io_omf.py"
-[ 94%] running checks test_io_sdf.py
-cd /build/reproducible-path/openstructure-2.9.2/modules/io/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/io/tests/test_io_sdf.py"
-[ 94%] Building CXX object modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/test_consistency_checks.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/test_consistency_checks.cc.o -MF CMakeFiles/ost_mol_alg_tests.dir/test_consistency_checks.cc.o.d -o CMakeFiles/ost_mol_alg_tests.dir/test_consistency_checks.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests/test_consistency_checks.cc
-Compound library not available. Some functionality may not work as expected.
-Compound library not available. Some functionality may not work as expected.
-[ 95%] Building CXX object modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/test_partial_sec_struct_assignment.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/test_partial_sec_struct_assignment.cc.o -MF CMakeFiles/ost_mol_alg_tests.dir/test_partial_sec_struct_assignment.cc.o.d -o CMakeFiles/ost_mol_alg_tests.dir/test_partial_sec_struct_assignment.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests/test_partial_sec_struct_assignment.cc
-No compound library available. Ignoring test_stereochemistry.py tests.
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 95%] Built target test_io_omf.py_run
-make -f modules/mol/base/tests/CMakeFiles/test_invalid.py_run.dir/build.make modules/mol/base/tests/CMakeFiles/test_invalid.py_run.dir/depend
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/tests/CMakeFiles/test_invalid.py_run.dir/DependInfo.cmake "--color="
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/mol/base/tests/CMakeFiles/test_invalid.py_run.dir/build.make modules/mol/base/tests/CMakeFiles/test_invalid.py_run.dir/build
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 96%] running checks test_invalid.py
-cd /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_invalid.py"
-.....
-----------------------------------------------------------------------
-Ran 5 tests in 0.045s
-
-OK
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 96%] Built target test_io_sdf.py_run
-make -f modules/mol/alg/tests/CMakeFiles/test_pdbize.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_pdbize.py_run.dir/depend
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_pdbize.py_run.dir/DependInfo.cmake "--color="
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/mol/alg/tests/CMakeFiles/test_pdbize.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_pdbize.py_run.dir/build
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 96%] running checks test_pdbize.py
-cd /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests/test_pdbize.py"
-Compound library not available. Some functionality may not work as expected.
-Compound library not available. Some functionality may not work as expected.
-........
-----------------------------------------------------------------------
-Ran 8 tests in 0.006s
-
-OK
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 96%] Built target test_pdbize.py_run
-make -f modules/mol/alg/tests/CMakeFiles/test_convenient_superpose.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_convenient_superpose.py_run.dir/depend
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_convenient_superpose.py_run.dir/DependInfo.cmake "--color="
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/mol/alg/tests/CMakeFiles/test_convenient_superpose.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_convenient_superpose.py_run.dir/build
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 96%] running checks test_convenient_superpose.py
-cd /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests/test_convenient_superpose.py"
-.......
-----------------------------------------------------------------------
-Ran 7 tests in 0.003s
-
-OK
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-Compound library not available. Some functionality may not work as expected.
-[ 96%] Built target test_invalid.py_run
-make -f modules/mol/alg/tests/CMakeFiles/test_hbond.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_hbond.py_run.dir/depend
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_hbond.py_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make -f modules/mol/alg/tests/CMakeFiles/test_hbond.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_hbond.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 96%] running checks test_hbond.py
+.[ 97%] running checks test_hbond.py
cd /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests/test_hbond.py"
Compound library not available. Some functionality may not work as expected.
-.[ 96%] Linking CXX executable ../../../../tests/ost_img_alg_tests
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_img_alg_tests.dir/link.txt --verbose=1
make -f modules/mol/alg/tests/CMakeFiles/test_accessibility.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_accessibility.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_accessibility.py_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make -f modules/mol/alg/tests/CMakeFiles/test_accessibility.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_accessibility.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 96%] running checks test_accessibility.py
+[ 97%] running checks test_accessibility.py
cd /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests/test_accessibility.py"
Compound library not available. Some functionality may not work as expected.
-s./usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/ost_img_alg_tests.dir/link.d CMakeFiles/ost_img_alg_tests.dir/test_clear.cc.o CMakeFiles/ost_img_alg_tests.dir/test_conj.cc.o CMakeFiles/ost_img_alg_tests.dir/test_convolute.cc.o CMakeFiles/ost_img_alg_tests.dir/test_discrete_shrink.cc.o CMakeFiles/ost_img_alg_tests.dir/test_fft.cc.o CMakeFiles/ost_img_alg_tests.dir/test_fill.cc.o CMakeFiles/ost_img_alg_tests.dir/test_filter.cc.o CMakeFiles/ost_img_alg_tests.dir/test_histogram.cc.o CMakeFiles/ost_img_alg_tests.dir/test_mirror.cc.o CMakeFiles/ost_img_alg_tests.dir/test_negate.cc.o CMakeFiles/ost_img_alg_tests.dir/test_power_spectrum.cc.o CMakeFiles/ost_img_alg_tests.dir/test_shift.cc.o CMakeFiles/ost_img_alg_tests.dir/test_stat.cc.o CMakeFiles/ost_img_alg_tests.dir/test_transform.cc.o CMakeFiles/ost_img_alg_tests.dir/test_normalizer.cc.o CMakeFiles/ost_img_alg_tests.dir/tests.cc.o -o ../../../../tests/ost_img_alg_tests -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib /usr/lib/i386-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../../stage/lib/libost_img_alg.so.2.9.2 /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_img.so.2.9.2 ../../../../stage/lib/libost_info.so.2.9.2 ../../../../stage/lib/libost_base.so.2.9.2 ../../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
..
----------------------------------------------------------------------
-Ran 2 tests in 0.021s
+Ran 2 tests in 0.085s
OK
-[ 96%] Built target ost_img_alg_tests
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 97%] Built target test_hbond.py_run
make -f modules/mol/alg/tests/CMakeFiles/test_sec_struct.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_sec_struct.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_sec_struct.py_run.dir/DependInfo.cmake "--color="
-[ 96%] Built target test_hbond.py_run
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/mol/alg/tests/CMakeFiles/test_sec_struct.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_sec_struct.py_run.dir/build
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+s.[ 97%] running checks test_sec_struct.py
+cd /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests/test_sec_struct.py"
+SEQRES requires a valid compound library to handle non standard compounds. Their One letter codes will be set to X.
+No SEQRES found for chain 'A'. Most likely the entity_poly_seq category was missing from the input file.
+No SEQRES found for chain 'B'. Most likely the entity_poly_seq category was missing from the input file.
+No SEQRES found for chain 'C'. Most likely the entity_poly_seq category was missing from the input file.
+.......s
+----------------------------------------------------------------------
+Ran 12 tests in 6.032s
+
+OK (skipped=1)
+Compound library not available. Some functionality may not work as expected.
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 97%] Built target test_io_mmcif.py_run
make -f modules/mol/alg/tests/CMakeFiles/test_lddt.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_lddt.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_lddt.py_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/mol/alg/tests/CMakeFiles/test_sec_struct.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_sec_struct.py_run.dir/build
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-.make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make -f modules/mol/alg/tests/CMakeFiles/test_lddt.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_lddt.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 96%] running checks test_sec_struct.py
-cd /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests/test_sec_struct.py"
-..Compound library not available. Some functionality may not work as expected.
-[ 96%] running checks test_lddt.py
+[ 97%] running checks test_lddt.py
cd /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests/test_lddt.py"
-..Compound library not available. Some functionality may not work as expected.
-..
+s
----------------------------------------------------------------------
-Ran 9 tests in 1.995s
+Ran 1 test in 0.000s
-OK
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 96%] Built target test_convenient_superpose.py_run
+OK (skipped=1)
+.make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+Compound library not available. Some functionality may not work as expected.
+[ 97%] Built target test_sec_struct.py_run
make -f modules/mol/alg/tests/CMakeFiles/test_qsscore.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_qsscore.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_qsscore.py_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make -f modules/mol/alg/tests/CMakeFiles/test_qsscore.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_qsscore.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 96%] running checks test_qsscore.py
+[ 97%] running checks test_qsscore.py
cd /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests/test_qsscore.py"
-Compound library not available. Some functionality may not work as expected.
+.Compound library not available. Some functionality may not work as expected.
+.[ 97%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_view_op.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_view_op.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_view_op.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_view_op.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_view_op.cc
+....
+----------------------------------------------------------------------
+Ran 9 tests in 5.093s
+
+OK
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 97%] Built target test_convenient_superpose.py_run
make -f modules/mol/alg/tests/CMakeFiles/test_stereochemistry.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_stereochemistry.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_stereochemistry.py_run.dir/DependInfo.cmake "--color="
+[ 97%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/tests.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/tests.cc.o -MF CMakeFiles/ost_io_tests.dir/tests.cc.o.d -o CMakeFiles/ost_io_tests.dir/tests.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/tests/tests.cc
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+make -f modules/mol/alg/tests/CMakeFiles/test_stereochemistry.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_stereochemistry.py_run.dir/build
+make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 97%] running checks test_stereochemistry.py
+cd /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests/test_stereochemistry.py"
+Compound library not available. Some functionality may not work as expected.
+No compound lib available. Ignoring test_qsscore.py tests.
+make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 97%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_star_parser.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_star_parser.cc.o -MF CMakeFiles/ost_io_tests.dir/test_star_parser.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_star_parser.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/tests/test_star_parser.cc
+[ 97%] Built target test_qsscore.py_run
+No compound library available. Ignoring test_lddt.py tests.
make -f modules/mol/alg/tests/CMakeFiles/test_contact_score.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_contact_score.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_contact_score.py_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/mol/alg/tests/CMakeFiles/test_stereochemistry.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_stereochemistry.py_run.dir/build
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make -f modules/mol/alg/tests/CMakeFiles/test_contact_score.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_contact_score.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-s
-----------------------------------------------------------------------
-Ran 1 test in 0.000s
-
-OK (skipped=1)
-[ 96%] running checks test_contact_score.py
-[ 96%] running checks test_stereochemistry.py
+[ 97%] running checks test_contact_score.py
cd /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests/test_contact_score.py"
-cd /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests/test_stereochemistry.py"
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 96%] Built target test_sec_struct.py_run
+[ 97%] Built target test_lddt.py_run
make -f modules/mol/alg/tests/CMakeFiles/test_biounit.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_biounit.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_biounit.py_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make -f modules/mol/alg/tests/CMakeFiles/test_biounit.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_biounit.py_run.dir/build
+No compound library available. Ignoring test_stereochemistry.py tests.
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
Compound library not available. Some functionality may not work as expected.
-Compound library not available. Some functionality may not work as expected.
-[ 96%] running checks test_biounit.py
+[ 97%] running checks test_biounit.py
cd /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests/test_biounit.py"
-Compound library not available. Some functionality may not work as expected.
-Ignoring struct_ref_seq_dif with missing data item seq_num
-Ignoring struct_ref_seq_dif with missing data item seq_num
-SEQRES requires a valid compound library to handle non standard compounds. Their One letter codes will be set to X.
-unknown residue 'ACE' in SEQRES record. Setting one-letter-code to 'X'
-No compound library available. Ignoring test_stereochemistry.py tests.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 96%] Built target test_stereochemistry.py_run
+[ 97%] Built target test_stereochemistry.py_run
make -f modules/mol/alg/tests/CMakeFiles/test_ost_dockq.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_ost_dockq.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_ost_dockq.py_run.dir/DependInfo.cmake "--color="
-.
-----------------------------------------------------------------------
-Ran 1 test in 0.795s
-
-OK
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 96%] Built target test_biounit.py_run
-[ 96%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_dcd.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_dcd.cc.o -MF CMakeFiles/ost_io_tests.dir/test_io_dcd.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_io_dcd.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/tests/test_io_dcd.cc
+Compound library not available. Some functionality may not work as expected.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make -f modules/mol/alg/tests/CMakeFiles/test_ost_dockq.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_ost_dockq.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 97%] running checks test_ost_dockq.py
+cd /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests/test_ost_dockq.py"
+Ignoring struct_ref_seq_dif with missing data item seq_num
+Ignoring struct_ref_seq_dif with missing data item seq_num
+SEQRES requires a valid compound library to handle non standard compounds. Their One letter codes will be set to X.
+unknown residue 'ACE' in SEQRES record. Setting one-letter-code to 'X'
+Compound library not available. Some functionality may not work as expected.
.
----------------------------------------------------------------------
-Ran 2 tests in 4.494s
+Ran 1 test in 0.470s
-OK (skipped=1)
-Could not find NACCESS, could not compare Accessiblity function...
-No compound lib available. Ignoring test_qsscore.py tests.
-[ 96%] running checks test_ost_dockq.py
-cd /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests/test_ost_dockq.py"
+OK
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 96%] Built target test_accessibility.py_run
+[ 97%] Built target test_biounit.py_run
make -f modules/mol/alg/tests/CMakeFiles/test_bblddt.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_bblddt.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_bblddt.py_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 96%] Built target test_qsscore.py_run
-make -f modules/seq/base/tests/CMakeFiles/test_seq.py_run.dir/build.make modules/seq/base/tests/CMakeFiles/test_seq.py_run.dir/depend
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make -f modules/mol/alg/tests/CMakeFiles/test_bblddt.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_bblddt.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/seq/base/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/tests/CMakeFiles/test_seq.py_run.dir/DependInfo.cmake "--color="
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 97%] running checks test_bblddt.py
+[ 98%] running checks test_bblddt.py
cd /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests/test_bblddt.py"
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/seq/base/tests/CMakeFiles/test_seq.py_run.dir/build.make modules/seq/base/tests/CMakeFiles/test_seq.py_run.dir/build
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 97%] running checks test_seq.py
-cd /build/reproducible-path/openstructure-2.9.2/modules/seq/base/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/seq/base/tests/test_seq.py"
-No compound library available. Ignoring test_lddt.py tests.
Compound library not available. Some functionality may not work as expected.
-Compound library not available. Some functionality may not work as expected.
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 97%] Built target test_lddt.py_run
-make -f modules/seq/alg/tests/CMakeFiles/test_renumber.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_renumber.py_run.dir/depend
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/tests/CMakeFiles/test_renumber.py_run.dir/DependInfo.cmake "--color="
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/seq/alg/tests/CMakeFiles/test_renumber.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_renumber.py_run.dir/build
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
No compound lib available. Ignoring contact_score.py tests.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-Compound library not available. Some functionality may not work as expected.
-[ 97%] Built target test_contact_score.py_run
-[ 97%] running checks test_renumber.py
-cd /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests/test_renumber.py"
-make -f modules/seq/alg/tests/CMakeFiles/test_local_align.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_local_align.py_run.dir/depend
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/tests/CMakeFiles/test_local_align.py_run.dir/DependInfo.cmake "--color="
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/seq/alg/tests/CMakeFiles/test_local_align.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_local_align.py_run.dir/build
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 97%] running checks test_local_align.py
-cd /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests/test_local_align.py"
-Compound library not available. Some functionality may not work as expected.
-Compound library not available. Some functionality may not work as expected.
-.
-----------------------------------------------------------------------
-Ran 1 test in 0.653s
-
-OK
-No compound lib available. Ignoring test_bblddt.py tests.
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-.[ 97%] Built target test_ost_dockq.py_run
-.make -f modules/seq/alg/tests/CMakeFiles/test_global_align.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_global_align.py_run.dir/depend
-...make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/tests/CMakeFiles/test_global_align.py_run.dir/DependInfo.cmake "--color="
-...
-----------------------------------------------------------------------
-Ran 8 tests in 0.024s
-
-OK
-Could not find clustalw executable: ignoring some renumber unit tests
-..make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-............
-----------------------------------------------------------------------
-Ran 14 tests in 0.010s
-
-OK
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/seq/alg/tests/CMakeFiles/test_global_align.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_global_align.py_run.dir/build
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 97%] Built target test_bblddt.py_run
-make -f modules/seq/alg/tests/CMakeFiles/test_semiglobal_align.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_semiglobal_align.py_run.dir/depend
-...
-----------------------------------------------------------------------
-Ran 3 tests in 0.002s
-
-OK
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/tests/CMakeFiles/test_semiglobal_align.py_run.dir/DependInfo.cmake "--color="
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 97%] running checks test_global_align.py
-cd /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests/test_global_align.py"
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 97%] Built target test_renumber.py_run
-make -f modules/seq/alg/tests/CMakeFiles/test_semiglobal_align.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_semiglobal_align.py_run.dir/build
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 97%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_sdf.cc.o
-[ 97%] Built target test_seq.py_run
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_sdf.cc.o -MF CMakeFiles/ost_io_tests.dir/test_io_sdf.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_io_sdf.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/tests/test_io_sdf.cc
-[ 97%] running checks test_semiglobal_align.py
-cd /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests/test_semiglobal_align.py"
-[ 97%] Built target test_local_align.py_run
-make -f modules/seq/alg/tests/CMakeFiles/test_weight_matrix.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_weight_matrix.py_run.dir/depend
+[ 98%] Built target test_contact_score.py_run
+make -f modules/seq/base/tests/CMakeFiles/ost_seq_tests_run.dir/build.make modules/seq/base/tests/CMakeFiles/ost_seq_tests_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/tests/CMakeFiles/test_weight_matrix.py_run.dir/DependInfo.cmake "--color="
-[ 97%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_sdf_v3000.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_sdf_v3000.cc.o -MF CMakeFiles/ost_io_tests.dir/test_io_sdf_v3000.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_io_sdf_v3000.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/tests/test_io_sdf_v3000.cc
-[ 97%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_sequence_profile.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_sequence_profile.cc.o -MF CMakeFiles/ost_io_tests.dir/test_io_sequence_profile.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_io_sequence_profile.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/tests/test_io_sequence_profile.cc
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/seq/base/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/tests/CMakeFiles/ost_seq_tests_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/seq/alg/tests/CMakeFiles/test_weight_matrix.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_weight_matrix.py_run.dir/build
+make -f modules/seq/base/tests/CMakeFiles/ost_seq_tests_run.dir/build.make modules/seq/base/tests/CMakeFiles/ost_seq_tests_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 97%] running checks test_weight_matrix.py
-cd /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests/test_weight_matrix.py"
-Compound library not available. Some functionality may not work as expected.
-Compound library not available. Some functionality may not work as expected.
-Compound library not available. Some functionality may not work as expected.
-...
-----------------------------------------------------------------------
-Ran 3 tests in 0.001s
+[ 98%] running checks for module seq
+cd /build/reproducible-path/openstructure-2.9.2/modules/seq/base/tests && env OST_ROOT=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/tests/ost_seq_tests
+Running 32 test cases...
-OK
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 97%] Built target test_global_align.py_run
-.
+[1;32;49m*** No errors detected
+[0;39;49m.
----------------------------------------------------------------------
-Ran 1 test in 0.001s
-
-OK
-make -f modules/seq/alg/tests/CMakeFiles/test_alignment_from_chain_view.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_alignment_from_chain_view.py_run.dir/depend
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/tests/CMakeFiles/test_alignment_from_chain_view.py_run.dir/DependInfo.cmake "--color="
-..
-----------------------------------------------------------------------
-Ran 2 tests in 0.000s
+Ran 1 test in 1.278s
OK
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/seq/alg/tests/CMakeFiles/test_alignment_from_chain_view.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_alignment_from_chain_view.py_run.dir/build
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 97%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_pir.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_pir.cc.o -MF CMakeFiles/ost_io_tests.dir/test_pir.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_pir.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/tests/test_pir.cc
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 97%] running checks test_alignment_from_chain_view.py
-cd /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests/test_alignment_from_chain_view.py"
-[ 97%] Built target test_semiglobal_align.py_run
-make -f modules/seq/alg/tests/CMakeFiles/test_aaindex.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_aaindex.py_run.dir/depend
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 98%] Built target ost_seq_tests_run
+make -f modules/seq/base/tests/CMakeFiles/test_seq.py_run.dir/build.make modules/seq/base/tests/CMakeFiles/test_seq.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/tests/CMakeFiles/test_aaindex.py_run.dir/DependInfo.cmake "--color="
-[ 97%] Built target test_weight_matrix.py_run
-make -f modules/base/tests/CMakeFiles/test_stutil.py_run.dir/build.make modules/base/tests/CMakeFiles/test_stutil.py_run.dir/depend
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/seq/base/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/base/tests/CMakeFiles/test_seq.py_run.dir/DependInfo.cmake "--color="
+[ 98%] Built target test_ost_dockq.py_run
+make -f modules/seq/alg/tests/CMakeFiles/test_renumber.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_renumber.py_run.dir/depend
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/seq/alg/tests/CMakeFiles/test_aaindex.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_aaindex.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/base/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/tests/CMakeFiles/test_stutil.py_run.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/tests/CMakeFiles/test_renumber.py_run.dir/DependInfo.cmake "--color="
+make -f modules/seq/base/tests/CMakeFiles/test_seq.py_run.dir/build.make modules/seq/base/tests/CMakeFiles/test_seq.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 97%] running checks test_aaindex.py
-cd /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests/test_aaindex.py"
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/base/tests/CMakeFiles/test_stutil.py_run.dir/build.make modules/base/tests/CMakeFiles/test_stutil.py_run.dir/build
+make -f modules/seq/alg/tests/CMakeFiles/test_renumber.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_renumber.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 97%] running checks test_stutil.py
-cd /build/reproducible-path/openstructure-2.9.2/modules/base/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/base/tests/test_stutil.py"
-Compound library not available. Some functionality may not work as expected.
+[ 98%] running checks test_seq.py
+cd /build/reproducible-path/openstructure-2.9.2/modules/seq/base/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/seq/base/tests/test_seq.py"
+[ 98%] running checks test_renumber.py
+cd /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests/test_renumber.py"
Compound library not available. Some functionality may not work as expected.
Compound library not available. Some functionality may not work as expected.
-......
-----------------------------------------------------------------------
-Ran 6 tests in 0.001s
-
-OK
-.
-----------------------------------------------------------------------
-Ran 1 test in 0.005s
-
-OK
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 97%] Built target test_stutil.py_run
-make -f modules/base/tests/CMakeFiles/test_table.py_run.dir/build.make modules/base/tests/CMakeFiles/test_table.py_run.dir/depend
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/base/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/tests/CMakeFiles/test_table.py_run.dir/DependInfo.cmake "--color="
-[ 97%] Built target test_alignment_from_chain_view.py_run
-make -f modules/base/tests/CMakeFiles/test_log.py_run.dir/build.make modules/base/tests/CMakeFiles/test_log.py_run.dir/depend
+No compound lib available. Ignoring test_bblddt.py tests.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/base/tests/CMakeFiles/test_table.py_run.dir/build.make modules/base/tests/CMakeFiles/test_table.py_run.dir/build
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/base/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/base/tests/CMakeFiles/test_log.py_run.dir/DependInfo.cmake "--color="
+[ 98%] Built target test_bblddt.py_run
+make -f modules/seq/alg/tests/CMakeFiles/test_local_align.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_local_align.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 97%] running checks test_table.py
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/tests/CMakeFiles/test_local_align.py_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/modules/base/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/base/tests/test_table.py"
-make -f modules/base/tests/CMakeFiles/test_log.py_run.dir/build.make modules/base/tests/CMakeFiles/test_log.py_run.dir/build
+make -f modules/seq/alg/tests/CMakeFiles/test_local_align.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_local_align.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-.
+..............
----------------------------------------------------------------------
-Ran 1 test in 0.092s
+Ran 14 tests in 0.012s
OK
-[ 97%] running checks test_log.py
-cd /build/reproducible-path/openstructure-2.9.2/modules/base/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/base/tests/test_log.py"
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 97%] Built target test_aaindex.py_run
-make -f modules/bindings/tests/CMakeFiles/test_msms.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_msms.py_run.dir/depend
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/tests/CMakeFiles/test_msms.py_run.dir/DependInfo.cmake "--color="
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/bindings/tests/CMakeFiles/test_msms.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_msms.py_run.dir/build
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-Compound library not available. Some functionality may not work as expected.
-[ 97%] running checks test_msms.py
-cd /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests/test_msms.py"
-Compound library not available. Some functionality may not work as expected.
-....
+...[ 98%] running checks test_local_align.py
+cd /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests/test_local_align.py"
+..make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+...
----------------------------------------------------------------------
-Ran 4 tests in 0.001s
+Ran 8 tests in 0.082s
OK
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-Compound library not available. Some functionality may not work as expected.
-[ 97%] Built target test_log.py_run
-make -f modules/bindings/tests/CMakeFiles/test_clustalw.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_clustalw.py_run.dir/depend
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/tests/CMakeFiles/test_clustalw.py_run.dir/DependInfo.cmake "--color="
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/bindings/tests/CMakeFiles/test_clustalw.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_clustalw.py_run.dir/build
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 97%] running checks test_clustalw.py
-cd /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests/test_clustalw.py"
-[ 97%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_iomanager.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_iomanager.cc.o -MF CMakeFiles/ost_io_tests.dir/test_iomanager.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_iomanager.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/tests/test_iomanager.cc
-Could not find msms executable: ignoring unit tests
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 97%] Built target test_msms.py_run
-make -f modules/bindings/tests/CMakeFiles/test_hhblits.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_hhblits.py_run.dir/depend
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/tests/CMakeFiles/test_hhblits.py_run.dir/DependInfo.cmake "--color="
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/bindings/tests/CMakeFiles/test_hhblits.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_hhblits.py_run.dir/build
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 97%] running checks test_hhblits.py
-cd /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests/test_hhblits.py"
-Compound library not available. Some functionality may not work as expected.
-Compound library not available. Some functionality may not work as expected.
-No HHblits installation found: skip unit tests
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 97%] Built target test_hhblits.py_run
-make -f modules/bindings/tests/CMakeFiles/test_blast.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_blast.py_run.dir/depend
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/tests/CMakeFiles/test_blast.py_run.dir/DependInfo.cmake "--color="
-Could not find clustalw executable: ignoring unit tests
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/bindings/tests/CMakeFiles/test_blast.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_blast.py_run.dir/build
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 97%] running checks test_blast.py
-cd /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests/test_blast.py"
-[ 97%] Built target test_clustalw.py_run
-make -f modules/bindings/tests/CMakeFiles/test_kclust.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_kclust.py_run.dir/depend
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/tests/CMakeFiles/test_kclust.py_run.dir/DependInfo.cmake "--color="
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/bindings/tests/CMakeFiles/test_kclust.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_kclust.py_run.dir/build
+Could not find clustalw executable: ignoring some renumber unit tests
+[ 98%] Built target test_seq.py_run
+make -f modules/seq/alg/tests/CMakeFiles/test_global_align.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_global_align.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 97%] running checks test_kclust.py
-cd /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests/test_kclust.py"
-Compound library not available. Some functionality may not work as expected.
-/build/reproducible-path/openstructure-2.9.2/modules/bindings/tests/test_blast.py:81: SyntaxWarning: invalid escape sequence '\d'
- re_v = re.compile('\d+\.\d+\.\d+')
-Compound library not available. Some functionality may not work as expected.
-Could not find kClust executable: ignoring unit tests
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/tests/CMakeFiles/test_global_align.py_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 97%] Built target test_kclust.py_run
-make -f modules/bindings/tests/CMakeFiles/test_naccess.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_naccess.py_run.dir/depend
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/tests/CMakeFiles/test_naccess.py_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/bindings/tests/CMakeFiles/test_naccess.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_naccess.py_run.dir/build
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 97%] running checks test_naccess.py
-cd /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests/test_naccess.py"
-make -f modules/bindings/tests/CMakeFiles/test_cadscore.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_cadscore.py_run.dir/depend
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/tests/CMakeFiles/test_cadscore.py_run.dir/DependInfo.cmake "--color="
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/bindings/tests/CMakeFiles/test_cadscore.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_cadscore.py_run.dir/build
+make -f modules/seq/alg/tests/CMakeFiles/test_global_align.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_global_align.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 97%] running checks test_cadscore.py
-cd /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests/test_cadscore.py"
-Compound library not available. Some functionality may not work as expected.
-Could not find blast executable: ignoring unit tests
+[ 98%] Built target test_renumber.py_run
+make -f modules/seq/alg/tests/CMakeFiles/test_semiglobal_align.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_semiglobal_align.py_run.dir/depend
Compound library not available. Some functionality may not work as expected.
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 97%] Built target test_blast.py_run
-make -f modules/bindings/tests/CMakeFiles/test_tmtools.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_tmtools.py_run.dir/depend
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/tests/CMakeFiles/test_tmtools.py_run.dir/DependInfo.cmake "--color="
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/bindings/tests/CMakeFiles/test_tmtools.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_tmtools.py_run.dir/build
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 97%] running checks test_tmtools.py
-cd /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests/test_tmtools.py"
-Could not find NACCESS, could not test binding...
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 97%] Built target test_naccess.py_run
-make -f modules/bindings/tests/CMakeFiles/test_ialign.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_ialign.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/tests/CMakeFiles/test_ialign.py_run.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/tests/CMakeFiles/test_semiglobal_align.py_run.dir/DependInfo.cmake "--color="
+[ 98%] running checks test_global_align.py
+cd /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests/test_global_align.py"
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/bindings/tests/CMakeFiles/test_ialign.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_ialign.py_run.dir/build
+make -f modules/seq/alg/tests/CMakeFiles/test_semiglobal_align.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_semiglobal_align.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+[ 98%] running checks test_semiglobal_align.py
+cd /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests/test_semiglobal_align.py"
Compound library not available. Some functionality may not work as expected.
-[ 97%] running checks test_ialign.py
-cd /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests/test_ialign.py"
-make -f modules/bindings/tests/CMakeFiles/test_lga.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_lga.py_run.dir/depend
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/tests/CMakeFiles/test_lga.py_run.dir/DependInfo.cmake "--color="
-sCompound library not available. Some functionality may not work as expected.
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/bindings/tests/CMakeFiles/test_lga.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_lga.py_run.dir/build
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 97%] running checks test_lga.py
-cd /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests/test_lga.py"
Compound library not available. Some functionality may not work as expected.
-......./build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ost/table.py:2696: DeprecationWarning: `trapz` is deprecated. Use `trapezoid` instead, or one of the numerical integration functions in `scipy.integrate`.
- return np.trapz(enr[1], enr[0])
-../build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ost/table.py:2807: DeprecationWarning: `trapz` is deprecated. Use `trapezoid` instead, or one of the numerical integration functions in `scipy.integrate`.
- return np.trapz(roc[1], roc[0])
-.................
+...
----------------------------------------------------------------------
-Ran 3 tests in 0.493s
+Ran 3 tests in 0.012s
OK
-Could not find tmalign executable: ignoring unit tests
-Could not find tmalign executable: ignoring unit tests
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 97%] Built target test_tmtools.py_run
-[ 97%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/tests.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/tests.cc.o -MF CMakeFiles/ost_io_tests.dir/tests.cc.o.d -o CMakeFiles/ost_io_tests.dir/tests.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/tests/tests.cc
.
----------------------------------------------------------------------
-Ran 1 test in 0.035s
+Ran 1 test in 0.002s
OK
-Could not find ialign master perl script: ignoring unit tests
-make -f modules/bindings/tests/CMakeFiles/test_hbplus.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_hbplus.py_run.dir/depend
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/tests/CMakeFiles/test_hbplus.py_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/bindings/tests/CMakeFiles/test_hbplus.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_hbplus.py_run.dir/build
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 97%] running checks test_hbplus.py
-cd /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests/test_hbplus.py"
-[ 97%] Built target test_ialign.py_run
-.make -f modules/bindings/tests/CMakeFiles/test_dockq.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_dockq.py_run.dir/depend
-
-----------------------------------------------------------------------
-Ran 1 test in 0.043s
-
-OK
-Could not find lga executable: ignoring unit tests
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/bindings/tests/CMakeFiles/test_dockq.py_run.dir/DependInfo.cmake "--color="
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/bindings/tests/CMakeFiles/test_dockq.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_dockq.py_run.dir/build
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-Compound library not available. Some functionality may not work as expected.
-[ 97%] Built target test_lga.py_run
-make -f modules/conop/tests/CMakeFiles/test_processor.py_run.dir/build.make modules/conop/tests/CMakeFiles/test_processor.py_run.dir/depend
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/conop/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/tests/CMakeFiles/test_processor.py_run.dir/DependInfo.cmake "--color="
-[ 97%] running checks test_dockq.py
-cd /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/bindings/tests/test_dockq.py"
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/conop/tests/CMakeFiles/test_processor.py_run.dir/build.make modules/conop/tests/CMakeFiles/test_processor.py_run.dir/build
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 98%] running checks test_processor.py
-cd /build/reproducible-path/openstructure-2.9.2/modules/conop/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/conop/tests/test_processor.py"
-Compound library not available. Some functionality may not work as expected.
-Compound library not available. Some functionality may not work as expected.
-[ 98%] Linking CXX executable ../../../tests/ost_gfx_tests
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_gfx_tests.dir/link.txt --verbose=1
-Could not find DockQ.py, could not test binding...
-Could not find hbplus, could not test binding...
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 98%] Built target test_dockq.py_run
-make -f modules/conop/tests/CMakeFiles/test_complib.py_run.dir/build.make modules/conop/tests/CMakeFiles/test_complib.py_run.dir/depend
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/conop/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/tests/CMakeFiles/test_complib.py_run.dir/DependInfo.cmake "--color="
-[ 98%] Built target test_hbplus.py_run
-make -f modules/db/tests/CMakeFiles/test_linear_db.py_run.dir/build.make modules/db/tests/CMakeFiles/test_linear_db.py_run.dir/depend
+[ 98%] Built target test_local_align.py_run
+[ 98%] Built target test_semiglobal_align.py_run
+[ 98%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_mmcif_reader.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_mmcif_reader.cc.o -MF CMakeFiles/ost_io_tests.dir/test_mmcif_reader.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_mmcif_reader.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/tests/test_mmcif_reader.cc
+make -f modules/seq/alg/tests/CMakeFiles/test_weight_matrix.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_weight_matrix.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/db/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/db/tests/CMakeFiles/test_linear_db.py_run.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/tests/CMakeFiles/test_weight_matrix.py_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/conop/tests/CMakeFiles/test_complib.py_run.dir/build.make modules/conop/tests/CMakeFiles/test_complib.py_run.dir/build
+make -f modules/seq/alg/tests/CMakeFiles/test_weight_matrix.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_weight_matrix.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-.
+...
----------------------------------------------------------------------
-Ran 1 test in 0.000s
+Ran 3 tests in 0.011s
OK
+[ 98%] running checks test_weight_matrix.py
+cd /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests/test_weight_matrix.py"
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/db/tests/CMakeFiles/test_linear_db.py_run.dir/build.make modules/db/tests/CMakeFiles/test_linear_db.py_run.dir/build
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 98%] running checks test_complib.py
-cd /build/reproducible-path/openstructure-2.9.2/modules/conop/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/conop/tests/test_complib.py"
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 98%] running checks test_linear_db.py
-cd /build/reproducible-path/openstructure-2.9.2/modules/db/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/db/tests/test_linear_db.py"
-[ 98%] Built target test_processor.py_run
-make -f modules/geom/tests/CMakeFiles/test_geom.py_run.dir/build.make modules/geom/tests/CMakeFiles/test_geom.py_run.dir/depend
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/geom/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/geom/tests/CMakeFiles/test_geom.py_run.dir/DependInfo.cmake "--color="
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/geom/tests/CMakeFiles/test_geom.py_run.dir/build.make modules/geom/tests/CMakeFiles/test_geom.py_run.dir/build
+[ 98%] Built target test_global_align.py_run
+make -f modules/seq/alg/tests/CMakeFiles/test_alignment_from_chain_view.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_alignment_from_chain_view.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/tests/CMakeFiles/test_alignment_from_chain_view.py_run.dir/DependInfo.cmake "--color="
Compound library not available. Some functionality may not work as expected.
-[ 98%] running checks test_geom.py
-cd /build/reproducible-path/openstructure-2.9.2/modules/geom/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/geom/tests/test_geom.py"
-Compound library not available. Some functionality may not work as expected.
-Compound library not available. Some functionality may not work as expected.
-...
-----------------------------------------------------------------------
-Ran 3 tests in 0.048s
-
-OK
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-../build/reproducible-path/openstructure-2.9.2/modules/conop/tests/test_complib.py:71: UserWarning: Compound library not available. Some functionality may not work as expected.
- warnings.warn("Compound library not available. Some functionality may not work as expected.")
-.........
-----------------------------------------------------------------------
-Ran 8 tests in 0.003s
-
-OK
-[ 98%] Built target test_linear_db.py_run
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/gfx/tests/CMakeFiles/test_gfx.py_run.dir/build.make modules/gfx/tests/CMakeFiles/test_gfx.py_run.dir/depend
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/gfx/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/tests/CMakeFiles/test_gfx.py_run.dir/DependInfo.cmake "--color="
-[ 98%] Built target test_geom.py_run
-[ 98%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_star_parser.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_star_parser.cc.o -MF CMakeFiles/ost_io_tests.dir/test_star_parser.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_star_parser.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/tests/test_star_parser.cc
-.make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/gfx/tests/CMakeFiles/test_gfx.py_run.dir/build.make modules/gfx/tests/CMakeFiles/test_gfx.py_run.dir/build
+make -f modules/seq/alg/tests/CMakeFiles/test_alignment_from_chain_view.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_alignment_from_chain_view.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 98%] running checks test_gfx.py
-cd /build/reproducible-path/openstructure-2.9.2/modules/gfx/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/gfx/tests/test_gfx.py"
+[ 98%] running checks test_alignment_from_chain_view.py
+cd /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ /usr/bin/python3 /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests/test_alignment_from_chain_view.py"
Compound library not available. Some functionality may not work as expected.
-....
+[100%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_mmcif_writer.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_mmcif_writer.cc.o -MF CMakeFiles/ost_io_tests.dir/test_mmcif_writer.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_mmcif_writer.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/tests/test_mmcif_writer.cc
+..
----------------------------------------------------------------------
-Ran 8 tests in 1.023s
+Ran 2 tests in 0.000s
OK
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 98%] Built target test_complib.py_run
-make -f modules/img/alg/tests/CMakeFiles/ost_img_alg_tests_run.dir/build.make modules/img/alg/tests/CMakeFiles/ost_img_alg_tests_run.dir/depend
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/img/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/img/alg/tests/CMakeFiles/ost_img_alg_tests_run.dir/DependInfo.cmake "--color="
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/ost_gfx_tests.dir/link.d CMakeFiles/ost_gfx_tests.dir/tests.cc.o CMakeFiles/ost_gfx_tests.dir/test_gfx_node.cc.o CMakeFiles/ost_gfx_tests.dir/test_color.cc.o CMakeFiles/ost_gfx_tests.dir/test_map_octree.cc.o -o ../../../tests/ost_gfx_tests -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib /usr/lib/i386-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../stage/lib/libost_gfx.so.2.9.2 ../../../stage/lib/libost_io.so.2.9.2 /usr/lib/i386-linux-gnu/libOpenGL.so /usr/lib/i386-linux-gnu/libGLX.so /usr/lib/i386-linux-gnu/libGLU.so ../../../stage/lib/libost_mol_alg.so.2.9.2 ../../../stage/lib/libost_conop.so.2.9.2 ../../../stage/lib/libost_db.so.2.9.2 /usr/lib/i386-linux-gnu/libsqlite3.so ../../../stage/lib/libost_img_alg.so.2.9.2 ../../../stage/lib/libost_img.so.2.9.2 /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libfftw3f_threads.so /usr/lib/i386-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_thread.so.1.83.0 ../../../stage/lib/libost_seq_alg.so.2.9.2 ../../../stage/lib/libost_seq.so.2.9.2 ../../../stage/lib/libost_mol.so.2.9.2 ../../../stage/lib/libost_info.so.2.9.2 ../../../stage/lib/libost_base.so.2.9.2 ../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/i386-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/i386-linux-gnu/libtiff.so /usr/lib/i386-linux-gnu/libpng.so /usr/lib/i386-linux-gnu/libz.so
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 98%] Built target ost_gfx_tests
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/img/alg/tests/CMakeFiles/ost_img_alg_tests_run.dir/build.make modules/img/alg/tests/CMakeFiles/ost_img_alg_tests_run.dir/build
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 98%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_mmcif_reader.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_mmcif_reader.cc.o -MF CMakeFiles/ost_io_tests.dir/test_mmcif_reader.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_mmcif_reader.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/tests/test_mmcif_reader.cc
-......
+.
----------------------------------------------------------------------
-Ran 6 tests in 0.006s
+Ran 1 test in 0.012s
OK
-[ 98%] running checks for module img_alg
-cd /build/reproducible-path/openstructure-2.9.2/modules/img/alg/tests && env OST_ROOT=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/tests/ost_img_alg_tests
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 98%] Built target test_gfx.py_run
-make -f modules/gfx/tests/CMakeFiles/ost_gfx_tests_run.dir/build.make modules/gfx/tests/CMakeFiles/ost_gfx_tests_run.dir/depend
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/gfx/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/gfx/tests/CMakeFiles/ost_gfx_tests_run.dir/DependInfo.cmake "--color="
-Running 25 test cases...
-
-[1;32;49m*** No errors detected
-[0;39;49mmake[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/gfx/tests/CMakeFiles/ost_gfx_tests_run.dir/build.make modules/gfx/tests/CMakeFiles/ost_gfx_tests_run.dir/build
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[ 98%] running checks for module gfx
-[ 98%] Built target ost_img_alg_tests_run
-cd /build/reproducible-path/openstructure-2.9.2/modules/gfx/tests && env OST_ROOT=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/tests/ost_gfx_tests
-...../build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib/python3.13/dist-packages/ost/table.py:2807: DeprecationWarning: `trapz` is deprecated. Use `trapezoid` instead, or one of the numerical integration functions in `scipy.integrate`.
- return np.trapz(roc[1], roc[0])
-..........Running 13 test cases...
-
-[1;32;49m*** No errors detected
-[0;39;49m[100%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_mmcif_writer.cc.o
+[100%] Built target test_weight_matrix.py_run
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_mmcif_writer.cc.o -MF CMakeFiles/ost_io_tests.dir/test_mmcif_writer.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_mmcif_writer.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/tests/test_mmcif_writer.cc
-[100%] Built target ost_gfx_tests_run
+[100%] Built target test_alignment_from_chain_view.py_run
[100%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_mmcif_info.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_mmcif_info.cc.o -MF CMakeFiles/ost_io_tests.dir/test_mmcif_info.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_mmcif_info.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/tests/test_mmcif_info.cc
-[100%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_img.cc.o
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_img.cc.o -MF CMakeFiles/ost_io_tests.dir/test_io_img.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_io_img.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/tests/test_io_img.cc
-/usr/lib/python3.13/unittest/case.py:606: ResourceWarning: unclosed file <_io.BufferedReader name='testfiles/enrichment-out.png'>
- if method() is not None:
-ResourceWarning: Enable tracemalloc to get the object allocation traceback
-../usr/lib/python3.13/unittest/case.py:606: ResourceWarning: unclosed file <_io.BufferedReader name='testfiles/roc-out.png'>
- if method() is not None:
-ResourceWarning: Enable tracemalloc to get the object allocation traceback
-./usr/lib/python3.13/unittest/case.py:606: ResourceWarning: unclosed file <_io.BufferedReader name='testfiles/roc-same-val-out.png'>
- if method() is not None:
-ResourceWarning: Enable tracemalloc to get the object allocation traceback
-..........................................
+[100%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/tests.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/tests.cc.o -MF CMakeFiles/ost_mol_tests.dir/tests.cc.o.d -o CMakeFiles/ost_mol_tests.dir/tests.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/tests.cc
+.
----------------------------------------------------------------------
-Ran 83 tests in 4.990s
+Ran 2 tests in 11.336s
-OK
+OK (skipped=1)
+Could not find NACCESS, could not compare Accessiblity function...
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[100%] Built target test_table.py_run
+[100%] Built target test_accessibility.py_run
+[100%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_img.cc.o
+cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_img.cc.o -MF CMakeFiles/ost_io_tests.dir/test_io_img.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_io_img.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/tests/test_io_img.cc
[100%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_exceptions.cc.o
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/i386-linux-gnu/qt5 -isystem /usr/include/i386-linux-gnu/qt5/QtXml -isystem /usr/include/i386-linux-gnu/qt5/QtCore -isystem /usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/i386-linux-gnu/qt5/QtGui -isystem /usr/include/i386-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_exceptions.cc.o -MF CMakeFiles/ost_io_tests.dir/test_exceptions.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_exceptions.cc.o -c /build/reproducible-path/openstructure-2.9.2/modules/io/tests/test_exceptions.cc
[100%] Linking CXX executable ../../../../tests/ost_seq_alg_tests
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/seq/alg/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_seq_alg_tests.dir/link.txt --verbose=1
-[100%] Linking CXX executable ../../../../tests/ost_mol_alg_tests
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_mol_alg_tests.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/ost_mol_alg_tests.dir/link.d CMakeFiles/ost_mol_alg_tests.dir/test_superposition.cc.o CMakeFiles/ost_mol_alg_tests.dir/tests.cc.o CMakeFiles/ost_mol_alg_tests.dir/test_consistency_checks.cc.o CMakeFiles/ost_mol_alg_tests.dir/test_partial_sec_struct_assignment.cc.o -o ../../../../tests/ost_mol_alg_tests -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib /usr/lib/i386-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../../stage/lib/libost_io.so.2.9.2 ../../../../stage/lib/libost_mol_alg.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_thread.so.1.83.0 ../../../../stage/lib/libost_seq_alg.so.2.9.2 ../../../../stage/lib/libost_img_alg.so.2.9.2 ../../../../stage/lib/libost_img.so.2.9.2 /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_conop.so.2.9.2 ../../../../stage/lib/libost_db.so.2.9.2 ../../../../stage/lib/libost_seq.so.2.9.2 ../../../../stage/lib/libost_mol.so.2.9.2 ../../../../stage/lib/libost_info.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/i386-linux-gnu/libsqlite3.so ../../../../stage/lib/libost_base.so.2.9.2 ../../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/i386-linux-gnu/libtiff.so /usr/lib/i386-linux-gnu/libpng.so /usr/lib/i386-linux-gnu/libz.so
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[100%] Built target ost_mol_alg_tests
-make -f modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests_run.dir/build.make modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests_run.dir/depend
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests_run.dir/DependInfo.cmake "--color="
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/ost_seq_alg_tests.dir/link.d CMakeFiles/ost_seq_alg_tests.dir/test_distance_analysis.cc.o CMakeFiles/ost_seq_alg_tests.dir/test_merge_pairwise_alignments.cc.o CMakeFiles/ost_seq_alg_tests.dir/test_sequence_identity.cc.o CMakeFiles/ost_seq_alg_tests.dir/tests.cc.o -o ../../../../tests/ost_seq_alg_tests -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib /usr/lib/i386-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../../stage/lib/libost_io.so.2.9.2 ../../../../stage/lib/libost_mol_alg.so.2.9.2 ../../../../stage/lib/libost_seq_alg.so.2.9.2 ../../../../stage/lib/libost_conop.so.2.9.2 ../../../../stage/lib/libost_db.so.2.9.2 ../../../../stage/lib/libost_seq.so.2.9.2 ../../../../stage/lib/libost_mol.so.2.9.2 /usr/lib/i386-linux-gnu/libsqlite3.so /usr/lib/i386-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_thread.so.1.83.0 ../../../../stage/lib/libost_img_alg.so.2.9.2 ../../../../stage/lib/libost_img.so.2.9.2 ../../../../stage/lib/libost_info.so.2.9.2 ../../../../stage/lib/libost_base.so.2.9.2 ../../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/i386-linux-gnu/libfftw3f.so /usr/lib/i386-linux-gnu/libfftw3f_threads.so /usr/lib/i386-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/i386-linux-gnu/libtiff.so /usr/lib/i386-linux-gnu/libpng.so /usr/lib/i386-linux-gnu/libz.so
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests_run.dir/build.make modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests_run.dir/build
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[100%] running checks for module mol_alg
-cd /build/reproducible-path/openstructure-2.9.2/modules/mol/alg/tests && env OST_ROOT=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/tests/ost_mol_alg_tests
[100%] Built target ost_seq_alg_tests
make -f modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests_run.dir/build.make modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
@@ -24620,11 +24806,6 @@
make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
[100%] running checks for module seq_alg
cd /build/reproducible-path/openstructure-2.9.2/modules/seq/alg/tests && env OST_ROOT=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/tests/ost_seq_alg_tests
-Running 4 test cases...
-
-[1;32;49m*** No errors detected
-[0;39;49mmake[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[100%] Built target ost_mol_alg_tests_run
Running 19 test cases...
[1;32;49m*** No errors detected
@@ -24637,154 +24818,14 @@
/build/reproducible-path/openstructure-2.9.2/modules/io/tests/test_io_img.cc:130:10: warning: variable 'failed' set but not used [-Wunused-but-set-variable]
130 | bool failed=false;
| ^~~~~~
-In file included from /usr/include/c++/14/string:54,
- from /usr/include/boost/test/utils/basic_cstring/bcs_char_traits.hpp:25,
- from /usr/include/boost/test/utils/basic_cstring/basic_cstring.hpp:21,
- from /usr/include/boost/test/detail/global_typedef.hpp:15,
- from /usr/include/boost/test/tools/detail/print_helper.hpp:20,
- from /usr/include/boost/test/utils/lazy_ostream.hpp:16,
- from /usr/include/boost/test/tools/context.hpp:19,
- from /usr/include/boost/test/test_tools.hpp:42,
- from /usr/include/boost/test/unit_test.hpp:18,
- from /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_entity.cc:24:
-In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
- inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:904:15,
- inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
- inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
- inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
- inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
- inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
- inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
- inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
- inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
- inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
- inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
- inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::AtomBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:358:38,
- inlined from 'void mol_base::minmax::test_method()' at /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_entity.cc:436:20:
-/usr/include/c++/14/bits/basic_string.h:1084:16: warning: '*(const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<24, 4>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<24, 4>::data_)).std::__cxx11::basic_string<char>::_M_string_length' may be used uninitialized [-Wmaybe-uninitialized]
- 1084 | { return _M_string_length; }
- | ^~~~~~~~~~~~~~~~
-In file included from /usr/include/boost/variant.hpp:17,
- from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/query.hh:30,
- from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/entity_handle.hh:26,
- from /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/mol/mol.hh:22,
- from /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_entity.cc:27:
-/usr/include/boost/variant/variant.hpp: In member function 'void mol_base::minmax::test_method()':
-/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
- 2107 | variant temp(rhs);
- | ^~~~
-In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
- inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
- inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
- inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
- inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
- inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
- inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
- inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
- inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
- inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
- inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
- inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::AtomBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:358:38,
- inlined from 'void mol_base::minmax::test_method()' at /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_entity.cc:436:20:
-/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<24, 4>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<24, 4>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
- 905 | _M_capacity(__str._M_allocated_capacity);
- | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/usr/include/boost/variant/variant.hpp: In member function 'void mol_base::minmax::test_method()':
-/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
- 2107 | variant temp(rhs);
- | ^~~~
-In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
- inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
- inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
- inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
- inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
- inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
- inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
- inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
- inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
- inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
- inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
- inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::AtomBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:358:38,
- inlined from 'void mol_base::minmax::test_method()' at /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_entity.cc:436:20:
-/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<24, 4>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<24, 4>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
- 905 | _M_capacity(__str._M_allocated_capacity);
- | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/usr/include/boost/variant/variant.hpp: In member function 'void mol_base::minmax::test_method()':
-/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
- 2107 | variant temp(rhs);
- | ^~~~
-[100%] Linking CXX executable ../../../tests/ost_conop_tests
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_conop_tests.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/ost_conop_tests.dir/link.d CMakeFiles/ost_conop_tests.dir/test_amino_acids.cc.o CMakeFiles/ost_conop_tests.dir/test_heuristic_conop.cc.o CMakeFiles/ost_conop_tests.dir/tests.cc.o CMakeFiles/ost_conop_tests.dir/test_rule_based_conop.cc.o CMakeFiles/ost_conop_tests.dir/helper.cc.o -o ../../../tests/ost_conop_tests -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib /usr/lib/i386-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../stage/lib/libost_conop.so.2.9.2 ../../../stage/lib/libost_db.so.2.9.2 /usr/lib/i386-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.9.2 ../../../stage/lib/libost_mol.so.2.9.2 ../../../stage/lib/libost_info.so.2.9.2 ../../../stage/lib/libost_base.so.2.9.2 ../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/i386-linux-gnu/libboost_iostreams.so.1.83.0
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[100%] Built target ost_conop_tests
-make -f modules/conop/tests/CMakeFiles/ost_conop_tests_run.dir/build.make modules/conop/tests/CMakeFiles/ost_conop_tests_run.dir/depend
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.9.2 /build/reproducible-path/openstructure-2.9.2/modules/conop/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/tests /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/conop/tests/CMakeFiles/ost_conop_tests_run.dir/DependInfo.cmake "--color="
-make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-make -f modules/conop/tests/CMakeFiles/ost_conop_tests_run.dir/build.make modules/conop/tests/CMakeFiles/ost_conop_tests_run.dir/build
-make[4]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[100%] running checks for module conop
-cd /build/reproducible-path/openstructure-2.9.2/modules/conop/tests && env OST_ROOT=/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/tests/ost_conop_tests
-Running 18 test cases...
-unable to open database file
-unable to open database file
-unable to open database file
-unable to open database file
-unable to open database file
-unable to open database file
-unable to open database file
-unable to open database file
-unable to open database file
-
-[1;32;49m*** No errors detected
-[0;39;49mmake[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
-[100%] Built target ost_conop_tests_run
-In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
- inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:904:15,
- inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
- inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
- inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
- inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
- inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
- inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
- inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
- inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
- inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
- inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
- inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::ChainBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:365:38,
- inlined from 'void mol_base::entity_creator::test_method()' at /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_entity.cc:140:19:
-/usr/include/c++/14/bits/basic_string.h:1084:16: warning: '((__vector(1) unsigned int*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<24, 4>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<24, 4>::data_)))[1]' may be used uninitialized [-Wmaybe-uninitialized]
- 1084 | { return _M_string_length; }
- | ^~~~~~~~~~~~~~~~
-/usr/include/boost/variant/variant.hpp: In member function 'void mol_base::entity_creator::test_method()':
-/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
- 2107 | variant temp(rhs);
- | ^~~~
-In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
- inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:904:15,
- inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
- inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
- inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
- inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
- inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
- inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
- inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
- inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
- inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
- inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
- inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::ChainBase]' at /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/include/ost/generic_property.hh:365:38,
- inlined from 'void mol_base::entity_creator::test_method()' at /build/reproducible-path/openstructure-2.9.2/modules/mol/base/tests/test_entity.cc:140:19:
-/usr/include/c++/14/bits/basic_string.h:1084:16: warning: '((__vector(1) unsigned int*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<24, 4>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<24, 4>::data_)))[2]' may be used uninitialized [-Wmaybe-uninitialized]
- 1084 | { return _M_string_length; }
- | ^~~~~~~~~~~~~~~~
-/usr/include/boost/variant/variant.hpp: In member function 'void mol_base::entity_creator::test_method()':
-/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
- 2107 | variant temp(rhs);
- | ^~~~
[100%] Linking CXX executable ../../../../tests/ost_mol_tests
cd /build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/modules/mol/base/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_mol_tests.dir/link.txt --verbose=1
+.
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/ost_mol_tests.dir/link.d CMakeFiles/ost_mol_tests.dir/test_atom_groups.cc.o CMakeFiles/ost_mol_tests.dir/test_chain.cc.o CMakeFiles/ost_mol_tests.dir/test_conn.cc.o CMakeFiles/ost_mol_tests.dir/test_coord_group.cc.o CMakeFiles/ost_mol_tests.dir/test_builder.cc.o CMakeFiles/ost_mol_tests.dir/test_delete.cc.o CMakeFiles/ost_mol_tests.dir/test_entity.cc.o CMakeFiles/ost_mol_tests.dir/test_ics.cc.o CMakeFiles/ost_mol_tests.dir/test_query.cc.o CMakeFiles/ost_mol_tests.dir/test_surface.cc.o CMakeFiles/ost_mol_tests.dir/test_residue.cc.o CMakeFiles/ost_mol_tests.dir/test_view.cc.o CMakeFiles/ost_mol_tests.dir/test_transfer_connectivity.cc.o CMakeFiles/ost_mol_tests.dir/test_view_op.cc.o CMakeFiles/ost_mol_tests.dir/tests.cc.o -o ../../../../tests/ost_mol_tests -L/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu/stage/lib /usr/lib/i386-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../../stage/lib/libost_mol.so.2.9.2 ../../../../stage/lib/libost_info.so.2.9.2 ../../../../stage/lib/libost_base.so.2.9.2 ../../../../stage/lib/libost_geom.so.2.9.2 /usr/lib/i386-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_system.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/i386-linux-gnu/libQt5Core.so.5.15.15
+----------------------------------------------------------------------
+Ran 2 tests in 73.188s
+
+OK (skipped=1)
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
[100%] Built target ost_mol_tests
make -f modules/mol/base/tests/CMakeFiles/ost_mol_tests_run.dir/build.make modules/mol/base/tests/CMakeFiles/ost_mol_tests_run.dir/depend
@@ -24800,11 +24841,6 @@
[1;32;49m*** No errors detected
[0;39;49mmake[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
[100%] Built target ost_mol_tests_run
-.
-----------------------------------------------------------------------
-Ran 2 tests in 24.090s
-
-OK (skipped=1)
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
[100%] Built target test_cadscore.py_run
[100%] Linking CXX executable ../../../tests/ost_io_tests
@@ -24851,7 +24887,7 @@
dh_prep
dh_installdirs
dh_auto_install
- cd obj-i686-linux-gnu && make -j22 install DESTDIR=/build/reproducible-path/openstructure-2.9.2/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
+ cd obj-i686-linux-gnu && make -j10 install DESTDIR=/build/reproducible-path/openstructure-2.9.2/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu'
/usr/bin/cmake -S/build/reproducible-path/openstructure-2.9.2 -B/build/reproducible-path/openstructure-2.9.2/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
make -f CMakeFiles/Makefile2 preinstall
@@ -25948,20 +25984,20 @@
dh_installchangelogs
dh_python3
I: dh_python3 fs:421: renaming _ost_base.so to _ost_base.cpython-313-i386-linux-gnu.so
-I: dh_python3 fs:421: renaming _ost_io.so to _ost_io.cpython-313-i386-linux-gnu.so
-I: dh_python3 fs:421: renaming _ost_geom.so to _ost_geom.cpython-313-i386-linux-gnu.so
-I: dh_python3 fs:421: renaming _ost_bindings.so to _ost_bindings.cpython-313-i386-linux-gnu.so
-I: dh_python3 fs:421: renaming _ost_gfx.so to _ost_gfx.cpython-313-i386-linux-gnu.so
-I: dh_python3 fs:421: renaming _ost_gui.so to _ost_gui.cpython-313-i386-linux-gnu.so
I: dh_python3 fs:421: renaming _ost_seq.so to _ost_seq.cpython-313-i386-linux-gnu.so
I: dh_python3 fs:421: renaming _ost_seq_alg.so to _ost_seq_alg.cpython-313-i386-linux-gnu.so
+I: dh_python3 fs:421: renaming _ost_gfx.so to _ost_gfx.cpython-313-i386-linux-gnu.so
I: dh_python3 fs:421: renaming _ost_info.so to _ost_info.cpython-313-i386-linux-gnu.so
-I: dh_python3 fs:421: renaming _ost_conop.so to _ost_conop.cpython-313-i386-linux-gnu.so
I: dh_python3 fs:421: renaming _ost_mol.so to _ost_mol.cpython-313-i386-linux-gnu.so
I: dh_python3 fs:421: renaming _ost_mol_alg.so to _ost_mol_alg.cpython-313-i386-linux-gnu.so
-I: dh_python3 fs:421: renaming _ost_db.so to _ost_db.cpython-313-i386-linux-gnu.so
I: dh_python3 fs:421: renaming _ost_img.so to _ost_img.cpython-313-i386-linux-gnu.so
I: dh_python3 fs:421: renaming _ost_img_alg.so to _ost_img_alg.cpython-313-i386-linux-gnu.so
+I: dh_python3 fs:421: renaming _ost_conop.so to _ost_conop.cpython-313-i386-linux-gnu.so
+I: dh_python3 fs:421: renaming _ost_bindings.so to _ost_bindings.cpython-313-i386-linux-gnu.so
+I: dh_python3 fs:421: renaming _ost_geom.so to _ost_geom.cpython-313-i386-linux-gnu.so
+I: dh_python3 fs:421: renaming _ost_db.so to _ost_db.cpython-313-i386-linux-gnu.so
+I: dh_python3 fs:421: renaming _ost_gui.so to _ost_gui.cpython-313-i386-linux-gnu.so
+I: dh_python3 fs:421: renaming _ost_io.so to _ost_io.cpython-313-i386-linux-gnu.so
dh_perl
dh_link
dh_strip_nondeterminism
@@ -25978,55 +26014,55 @@
dpkg-gencontrol: warning: Provides field of package python3-ost: substitution variable ${python3:Provides} used, but is not defined
dh_md5sums
dh_builddeb
-dpkg-deb: building package 'libost-bindings2.9-dbgsym' in '../libost-bindings2.9-dbgsym_2.9.2-2_i386.deb'.
-dpkg-deb: building package 'libost-img-alg2.9-dbgsym' in '../libost-img-alg2.9-dbgsym_2.9.2-2_i386.deb'.
-dpkg-deb: building package 'libost-geom2.9-dbgsym' in '../libost-geom2.9-dbgsym_2.9.2-2_i386.deb'.
dpkg-deb: building package 'libost-base2.9' in '../libost-base2.9_2.9.2-2_i386.deb'.
-dpkg-deb: building package 'libost-db2.9' in '../libost-db2.9_2.9.2-2_i386.deb'.
-dpkg-deb: building package 'libost-gui2.9' in '../libost-gui2.9_2.9.2-2_i386.deb'.
-dpkg-deb: building package 'libost-io2.9-dbgsym' in '../libost-io2.9-dbgsym_2.9.2-2_i386.deb'.
-dpkg-deb: building package 'libost-mol2.9' in '../libost-mol2.9_2.9.2-2_i386.deb'.
-dpkg-deb: building package 'libost-info2.9' in '../libost-info2.9_2.9.2-2_i386.deb'.
-dpkg-deb: building package 'libost-seq-alg2.9-dbgsym' in '../libost-seq-alg2.9-dbgsym_2.9.2-2_i386.deb'.
-dpkg-deb: building package 'openstructure' in '../openstructure_2.9.2-2_i386.deb'.
-dpkg-deb: building package 'python3-ost-dbgsym' in '../python3-ost-dbgsym_2.9.2-2_i386.deb'.
-dpkg-deb: building package 'libost-conop-dev' in '../libost-conop-dev_2.9.2-2_i386.deb'.
-dpkg-deb: building package 'libost-gfx-dev' in '../libost-gfx-dev_2.9.2-2_i386.deb'.
-dpkg-deb: building package 'libost-img-dev' in '../libost-img-dev_2.9.2-2_i386.deb'.
dpkg-deb: building package 'libost-mol-alg-dev' in '../libost-mol-alg-dev_2.9.2-2_i386.deb'.
-dpkg-deb: building package 'libost-seq-dev' in '../libost-seq-dev_2.9.2-2_i386.deb'.
+dpkg-deb: building package 'libost-img-alg2.9-dbgsym' in '../libost-img-alg2.9-dbgsym_2.9.2-2_i386.deb'.
+dpkg-deb: building package 'libost-gfx2.9' in '../libost-gfx2.9_2.9.2-2_i386.deb'.
+dpkg-deb: building package 'libost-conop2.9-dbgsym' in '../libost-conop2.9-dbgsym_2.9.2-2_i386.deb'.
+dpkg-deb: building package 'libost-io2.9' in '../libost-io2.9_2.9.2-2_i386.deb'.
+dpkg-deb: building package 'libost-mol2.9-dbgsym' in '../libost-mol2.9-dbgsym_2.9.2-2_i386.deb'.
+dpkg-deb: building package 'libost-gui-dev' in '../libost-gui-dev_2.9.2-2_i386.deb'.
+dpkg-deb: building package 'openstructure' in '../openstructure_2.9.2-2_i386.deb'.
+dpkg-deb: building package 'libost-bindings-dev' in '../libost-bindings-dev_2.9.2-2_i386.deb'.
dpkg-deb: building package 'libost-base2.9-dbgsym' in '../libost-base2.9-dbgsym_2.9.2-2_i386.deb'.
-dpkg-deb: building package 'libost-db-dev' in '../libost-db-dev_2.9.2-2_i386.deb'.
+dpkg-deb: building package 'libost-conop-dev' in '../libost-conop-dev_2.9.2-2_i386.deb'.
dpkg-deb: building package 'libost-mol-dev' in '../libost-mol-dev_2.9.2-2_i386.deb'.
-dpkg-deb: building package 'libost-db2.9-dbgsym' in '../libost-db2.9-dbgsym_2.9.2-2_i386.deb'.
-dpkg-deb: building package 'libost-info-dev' in '../libost-info-dev_2.9.2-2_i386.deb'.
-dpkg-deb: building package 'libost-gui-dev' in '../libost-gui-dev_2.9.2-2_i386.deb'.
-dpkg-deb: building package 'libost-gfx2.9' in '../libost-gfx2.9_2.9.2-2_i386.deb'.
-dpkg-deb: building package 'libost-info2.9-dbgsym' in '../libost-info2.9-dbgsym_2.9.2-2_i386.deb'.
+dpkg-deb: building package 'libost-db-dev' in '../libost-db-dev_2.9.2-2_i386.deb'.
dpkg-deb: building package 'libost-geom-dev' in '../libost-geom-dev_2.9.2-2_i386.deb'.
-dpkg-deb: building package 'libost-io-dev' in '../libost-io-dev_2.9.2-2_i386.deb'.
dpkg-deb: building package 'libost-bindings2.9' in '../libost-bindings2.9_2.9.2-2_i386.deb'.
-dpkg-deb: building package 'libost-geom2.9' in '../libost-geom2.9_2.9.2-2_i386.deb'.
-dpkg-deb: building package 'libost-seq-alg-dev' in '../libost-seq-alg-dev_2.9.2-2_i386.deb'.
-dpkg-deb: building package 'libost-mol2.9-dbgsym' in '../libost-mol2.9-dbgsym_2.9.2-2_i386.deb'.
-dpkg-deb: building package 'libost-seq2.9' in '../libost-seq2.9_2.9.2-2_i386.deb'.
-dpkg-deb: building package 'libost-conop2.9' in '../libost-conop2.9_2.9.2-2_i386.deb'.
dpkg-deb: building package 'libost-img-alg-dev' in '../libost-img-alg-dev_2.9.2-2_i386.deb'.
+dpkg-deb: building package 'libost-gfx-dev' in '../libost-gfx-dev_2.9.2-2_i386.deb'.
+dpkg-deb: building package 'libost-seq-alg-dev' in '../libost-seq-alg-dev_2.9.2-2_i386.deb'.
+dpkg-deb: building package 'libost-img-dev' in '../libost-img-dev_2.9.2-2_i386.deb'.
dpkg-deb: building package 'libost-img2.9' in '../libost-img2.9_2.9.2-2_i386.deb'.
-dpkg-deb: building package 'libost-gui2.9-dbgsym' in '../libost-gui2.9-dbgsym_2.9.2-2_i386.deb'.
-dpkg-deb: building package 'libost-seq2.9-dbgsym' in '../libost-seq2.9-dbgsym_2.9.2-2_i386.deb'.
-dpkg-deb: building package 'libost-gfx2.9-dbgsym' in '../libost-gfx2.9-dbgsym_2.9.2-2_i386.deb'.
-dpkg-deb: building package 'libost-conop2.9-dbgsym' in '../libost-conop2.9-dbgsym_2.9.2-2_i386.deb'.
+dpkg-deb: building package 'libost-info-dev' in '../libost-info-dev_2.9.2-2_i386.deb'.
+dpkg-deb: building package 'libost-bindings2.9-dbgsym' in '../libost-bindings2.9-dbgsym_2.9.2-2_i386.deb'.
+dpkg-deb: building package 'libost-io-dev' in '../libost-io-dev_2.9.2-2_i386.deb'.
dpkg-deb: building package 'libost-img2.9-dbgsym' in '../libost-img2.9-dbgsym_2.9.2-2_i386.deb'.
-dpkg-deb: building package 'libost-io2.9' in '../libost-io2.9_2.9.2-2_i386.deb'.
+dpkg-deb: building package 'libost-gfx2.9-dbgsym' in '../libost-gfx2.9-dbgsym_2.9.2-2_i386.deb'.
+dpkg-deb: building package 'libost-db2.9' in '../libost-db2.9_2.9.2-2_i386.deb'.
+dpkg-deb: building package 'libost-db2.9-dbgsym' in '../libost-db2.9-dbgsym_2.9.2-2_i386.deb'.
+dpkg-deb: building package 'libost-geom2.9' in '../libost-geom2.9_2.9.2-2_i386.deb'.
+dpkg-deb: building package 'libost-seq-dev' in '../libost-seq-dev_2.9.2-2_i386.deb'.
+dpkg-deb: building package 'libost-geom2.9-dbgsym' in '../libost-geom2.9-dbgsym_2.9.2-2_i386.deb'.
+dpkg-deb: building package 'libost-info2.9' in '../libost-info2.9_2.9.2-2_i386.deb'.
+dpkg-deb: building package 'libost-conop2.9' in '../libost-conop2.9_2.9.2-2_i386.deb'.
+dpkg-deb: building package 'libost-info2.9-dbgsym' in '../libost-info2.9-dbgsym_2.9.2-2_i386.deb'.
+dpkg-deb: building package 'libost-io2.9-dbgsym' in '../libost-io2.9-dbgsym_2.9.2-2_i386.deb'.
dpkg-deb: building package 'libost-seq-alg2.9' in '../libost-seq-alg2.9_2.9.2-2_i386.deb'.
+dpkg-deb: building package 'libost-seq-alg2.9-dbgsym' in '../libost-seq-alg2.9-dbgsym_2.9.2-2_i386.deb'.
+dpkg-deb: building package 'libost-seq2.9' in '../libost-seq2.9_2.9.2-2_i386.deb'.
+dpkg-deb: building package 'libost-seq2.9-dbgsym' in '../libost-seq2.9-dbgsym_2.9.2-2_i386.deb'.
+dpkg-deb: building package 'libost-gui2.9' in '../libost-gui2.9_2.9.2-2_i386.deb'.
+dpkg-deb: building package 'libost-gui2.9-dbgsym' in '../libost-gui2.9-dbgsym_2.9.2-2_i386.deb'.
dpkg-deb: building package 'libost-mol-alg2.9' in '../libost-mol-alg2.9_2.9.2-2_i386.deb'.
dpkg-deb: building package 'libost-mol-alg2.9-dbgsym' in '../libost-mol-alg2.9-dbgsym_2.9.2-2_i386.deb'.
dpkg-deb: building package 'libost-img-alg2.9' in '../libost-img-alg2.9_2.9.2-2_i386.deb'.
-dpkg-deb: building package 'libost-base-dev' in '../libost-base-dev_2.9.2-2_i386.deb'.
-dpkg-deb: building package 'libost-bindings-dev' in '../libost-bindings-dev_2.9.2-2_i386.deb'.
+dpkg-deb: building package 'libost-mol2.9' in '../libost-mol2.9_2.9.2-2_i386.deb'.
dpkg-deb: building package 'openstructure-dbgsym' in '../openstructure-dbgsym_2.9.2-2_i386.deb'.
dpkg-deb: building package 'python3-ost' in '../python3-ost_2.9.2-2_i386.deb'.
+dpkg-deb: building package 'python3-ost-dbgsym' in '../python3-ost-dbgsym_2.9.2-2_i386.deb'.
+dpkg-deb: building package 'libost-base-dev' in '../libost-base-dev_2.9.2-2_i386.deb'.
dpkg-genbuildinfo --build=binary -O../openstructure_2.9.2-2_i386.buildinfo
dpkg-genchanges --build=binary -O../openstructure_2.9.2-2_i386.changes
dpkg-genchanges: info: binary-only upload (no source code included)
@@ -26034,12 +26070,14 @@
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
+I: user script /srv/workspace/pbuilder/52286/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/52286/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
-I: removing directory /srv/workspace/pbuilder/18805 and its subdirectories
-I: Current time: Thu Apr 9 13:50:35 -12 2026
-I: pbuilder-time-stamp: 1775785835
+I: removing directory /srv/workspace/pbuilder/52286 and its subdirectories
+I: Current time: Sat Mar 8 10:35:17 +14 2025
+I: pbuilder-time-stamp: 1741379717