Diff of the two buildlogs:

--
--- b1/build.log	2024-12-22 08:23:30.150458823 +0000
+++ b2/build.log	2024-12-22 08:25:16.925598617 +0000
@@ -1,6 +1,6 @@
 I: pbuilder: network access will be disabled during build
-I: Current time: Sat Jan 24 02:24:36 -12 2026
-I: pbuilder-time-stamp: 1769264676
+I: Current time: Sun Dec 22 22:23:37 +14 2024
+I: pbuilder-time-stamp: 1734855817
 I: Building the build Environment
 I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
 I: copying local configuration
@@ -33,54 +33,86 @@
 dpkg-source: info: applying gcc-4.1.patch
 I: Not using root during the build.
 I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/50544/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/41262/tmp/hooks/D01_modify_environment starting
+debug: Running on ionos2-i386.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+'/bin/sh' -> '/bin/bash'
+lrwxrwxrwx 1 root root 9 Dec 22 08:23 /bin/sh -> /bin/bash
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/41262/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/41262/tmp/hooks/D02_print_environment starting
 I: set
-  BUILDDIR='/build/reproducible-path'
-  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
-  BUILDUSERNAME='pbuilder1'
-  BUILD_ARCH='i386'
-  DEBIAN_FRONTEND='noninteractive'
-  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 '
-  DISTRIBUTION='unstable'
-  HOME='/root'
-  HOST_ARCH='i386'
+  BASH=/bin/sh
+  BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
+  BASH_ALIASES=()
+  BASH_ARGC=()
+  BASH_ARGV=()
+  BASH_CMDS=()
+  BASH_LINENO=([0]="12" [1]="0")
+  BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
+  BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
+  BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="i686-pc-linux-gnu")
+  BASH_VERSION='5.2.37(1)-release'
+  BUILDDIR=/build/reproducible-path
+  BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+  BUILDUSERNAME=pbuilder2
+  BUILD_ARCH=i386
+  DEBIAN_FRONTEND=noninteractive
+  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=10 '
+  DIRSTACK=()
+  DISTRIBUTION=unstable
+  EUID=0
+  FUNCNAME=([0]="Echo" [1]="main")
+  GROUPS=()
+  HOME=/root
+  HOSTNAME=i-capture-the-hostname
+  HOSTTYPE=i686
+  HOST_ARCH=i386
   IFS=' 	
   '
-  INVOCATION_ID='afb3610adec146578cfd6f9fbceb65f6'
-  LANG='C'
-  LANGUAGE='en_US:en'
-  LC_ALL='C'
-  LD_LIBRARY_PATH='/usr/lib/libeatmydata'
-  LD_PRELOAD='libeatmydata.so'
-  MAIL='/var/mail/root'
-  OPTIND='1'
-  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
-  PBCURRENTCOMMANDLINEOPERATION='build'
-  PBUILDER_OPERATION='build'
-  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
-  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
-  PBUILDER_SYSCONFDIR='/etc'
-  PPID='50544'
-  PS1='# '
-  PS2='> '
+  INVOCATION_ID=5a56eddac08e494cb55c88eba4dacf42
+  LANG=C
+  LANGUAGE=de_CH:de
+  LC_ALL=C
+  LD_LIBRARY_PATH=/usr/lib/libeatmydata
+  LD_PRELOAD=libeatmydata.so
+  MACHTYPE=i686-pc-linux-gnu
+  MAIL=/var/mail/root
+  OPTERR=1
+  OPTIND=1
+  OSTYPE=linux-gnu
+  PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
+  PBCURRENTCOMMANDLINEOPERATION=build
+  PBUILDER_OPERATION=build
+  PBUILDER_PKGDATADIR=/usr/share/pbuilder
+  PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
+  PBUILDER_SYSCONFDIR=/etc
+  PIPESTATUS=([0]="0")
+  POSIXLY_CORRECT=y
+  PPID=41262
   PS4='+ '
-  PWD='/'
-  SHELL='/bin/bash'
-  SHLVL='2'
-  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.pzTQF21P/pbuilderrc_vTyz --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.pzTQF21P/b1 --logfile b1/build.log loki_2.4.7.4-12.dsc'
-  SUDO_GID='112'
-  SUDO_UID='107'
-  SUDO_USER='jenkins'
-  TERM='unknown'
-  TZ='/usr/share/zoneinfo/Etc/GMT+12'
-  USER='root'
-  _='/usr/bin/systemd-run'
-  http_proxy='http://213.165.73.152:3128'
+  PWD=/
+  SHELL=/bin/bash
+  SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
+  SHLVL=3
+  SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.pzTQF21P/pbuilderrc_XQQ1 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.pzTQF21P/b2 --logfile b2/build.log loki_2.4.7.4-12.dsc'
+  SUDO_GID=112
+  SUDO_UID=107
+  SUDO_USER=jenkins
+  TERM=unknown
+  TZ=/usr/share/zoneinfo/Etc/GMT-14
+  UID=0
+  USER=root
+  _='I: set'
+  http_proxy=http://46.16.76.132:3128
 I: uname -a
-  Linux ionos16-i386 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux
+  Linux i-capture-the-hostname 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux
 I: ls -l /bin
-  lrwxrwxrwx 1 root root 7 Nov 22  2024 /bin -> usr/bin
-I: user script /srv/workspace/pbuilder/50544/tmp/hooks/D02_print_environment finished
+  lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
+I: user script /srv/workspace/pbuilder/41262/tmp/hooks/D02_print_environment finished
  -> Attempting to satisfy build-dependencies
  -> Creating pbuilder-satisfydepends-dummy package
 Package: pbuilder-satisfydepends-dummy
@@ -145,7 +177,7 @@
 Get: 27 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
 Get: 28 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB]
 Get: 29 http://deb.debian.org/debian unstable/main i386 debhelper all 13.22 [919 kB]
-Fetched 20.1 MB in 5s (3740 kB/s)
+Fetched 20.1 MB in 1s (23.9 MB/s)
 debconf: delaying package configuration, since apt-utils is not installed
 Selecting previously unselected package sensible-utils.
 (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19953 files and directories currently installed.)
@@ -276,7 +308,11 @@
 Building tag database...
  -> Finished parsing the build-deps
 I: Building the package
-I: Running cd /build/reproducible-path/loki-2.4.7.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../loki_2.4.7.4-12_source.changes
+I: user script /srv/workspace/pbuilder/41262/tmp/hooks/A99_set_merged_usr starting
+Not re-configuring usrmerge for unstable
+I: user script /srv/workspace/pbuilder/41262/tmp/hooks/A99_set_merged_usr finished
+hostname: Name or service not known
+I: Running cd /build/reproducible-path/loki-2.4.7.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S  > ../loki_2.4.7.4-12_source.changes
 dpkg-buildpackage: info: source package loki
 dpkg-buildpackage: info: source version 2.4.7.4-12
 dpkg-buildpackage: info: source distribution unstable
@@ -397,7 +433,7 @@
 # nothing to do here
 make[1]: Leaving directory '/build/reproducible-path/loki-2.4.7.4'
    dh_auto_build -Nloki-doc
-	make -j22
+	make -j10
 make[1]: Entering directory '/build/reproducible-path/loki-2.4.7.4'
 for subdir in libsrc prepsrc lokisrc utils; do \
 (cd $subdir; make depend) \
@@ -450,9 +486,6 @@
 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o match_records.o match_records.c
 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o init_fam.o init_fam.c
 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o output_data.o output_data.c
-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o get_marker_name.o get_marker_name.c
-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o prep.o prep.c
-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o calc_nrm.o calc_nrm.c
 setup_ped.c: In function 'setup_pedigree':
 setup_ped.c:426:83: warning: this statement may fall through [-Wimplicit-fallthrough=]
   426 |                                                                                 if(i!=id) {
@@ -460,6 +493,7 @@
 setup_ped.c:430:74: note: here
   430 |                                                                          default:
       |                                                                          ^~~~~~~
+lex.yy.c:2062:12: warning: 'input' defined but not used [-Wunused-function]
 setup_ped.c: In function 'check_ymark':
 setup_ped.c:1135:42: warning: pointer 'list' may be used after 'free' [-Wuse-after-free]
  1135 |                 if(pl->type==LINK_Y) list[ny++]=locus;
@@ -473,16 +507,19 @@
 setup_ped.c:1127:9: note: call to 'free' here
  1127 |         free(list);
       |         ^~~~~~~~~~
+gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o get_marker_name.o get_marker_name.c
+gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o prep.o prep.c
+gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o calc_nrm.o calc_nrm.c
 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o write_report.o write_report.c
+write_report.c: In function 'WriteReport':
+write_report.c:286:28: warning: suggest parentheses around operand of '!' or change '&' to '&&' or '!' to '~' [-Wparentheses]
+  286 |                         if(!elem->type&(ST_MODEL|ST_TRAIT)) continue;
+      |                            ^~~~~~~~~~~
+write_report.c:300:28: warning: suggest parentheses around operand of '!' or change '&' to '&&' or '!' to '~' [-Wparentheses]
+  300 |                         if(!elem->type&(ST_MODEL|ST_TRAIT)) continue;
+      |                            ^~~~~~~~~~~
 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o prep_utils.o prep_utils.c
 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o gen_elim.o gen_elim.c
-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o prep_do_peel_op.o prep_do_peel_op.c
-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o write_data.o write_data.c
-prep_do_peel_op.c: In function 'do_peel_op':
-prep_do_peel_op.c:238:26: warning: variable 'fill' set but not used [-Wunused-but-set-variable]
-  238 |         double max_terms,fill;
-      |                          ^~~~
-lex.yy.c:2062:12: warning: 'input' defined but not used [-Wunused-function]
 control_lex.l: In function 'yy_orig_lex':
 control_lex.l:106:11: warning: '__builtin_strncpy' specified bound 4096 equals destination size [-Wstringop-truncation]
   106 |     (void)strncpy(linebuf,yytext+1,LINEBUFSIZE);
@@ -490,13 +527,6 @@
 control_lex.l:95:11: warning: '__builtin_strncpy' specified bound 4096 equals destination size [-Wstringop-truncation]
    95 |     (void)strncpy(linebuf,yytext,LINEBUFSIZE);
       |           ^
-write_report.c: In function 'WriteReport':
-write_report.c:286:28: warning: suggest parentheses around operand of '!' or change '&' to '&&' or '!' to '~' [-Wparentheses]
-  286 |                         if(!elem->type&(ST_MODEL|ST_TRAIT)) continue;
-      |                            ^~~~~~~~~~~
-write_report.c:300:28: warning: suggest parentheses around operand of '!' or change '&' to '&&' or '!' to '~' [-Wparentheses]
-  300 |                         if(!elem->type&(ST_MODEL|ST_TRAIT)) continue;
-      |                            ^~~~~~~~~~~
 gen_elim.c: In function 'min_degree':
 gen_elim.c:1075:31: warning: variable 'best_fg' set but not used [-Wunused-but-set-variable]
  1075 |         int x,i1,k1,k2,*trans,best_fg=0;
@@ -515,6 +545,12 @@
 gen_elim.c:1266:34: warning: variable 'pp1' set but not used [-Wunused-but-set-variable]
  1266 |         struct Peelseq_Head *pp,*pp1;
       |                                  ^~~
+gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o prep_do_peel_op.o prep_do_peel_op.c
+gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include  -Wdate-time -D_FORTIFY_SOURCE=2  -c -o write_data.o write_data.c
+prep_do_peel_op.c: In function 'do_peel_op':
+prep_do_peel_op.c:238:26: warning: variable 'fill' set but not used [-Wunused-but-set-variable]
+  238 |         double max_terms,fill;
+      |                          ^~~~
 /usr/bin/ar cr libprep.a control_parse.o control_lex.o read_data.o setup_ped.o recode_fact.o cleanup.o restrict_data.o match_records.o init_fam.o output_data.o get_marker_name.o
 /usr/bin/ranlib libprep.a
 (cd compat; make)
@@ -547,21 +583,6 @@
 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o output_recomb.o output_recomb.c
 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o seg_pen.o seg_pen.c
 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o gen_pen.o gen_pen.c
-gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -DIBD_COMPRESS_PROG=\"/usr/bin/gzip\" loki_ibd.c
-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o get_founders.o get_founders.c
-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o pass_founder_genes.o pass_founder_genes.c
-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki.o loki.c
-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_peel.o loki_peel.c
-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_init.o loki_init.c
-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o alloc_loki.o alloc_loki.c
-gen_pen.c: In function 'calc_degree':
-gen_pen.c:321:31: warning: variable 'k2' set but not used [-Wunused-but-set-variable]
-  321 |         int i1,j,j1,j2,k=0,k1,k2;
-      |                               ^~
-pass_founder_genes.c: In function 'pass_founder_genes':
-pass_founder_genes.c:35:47: warning: variable 'locus1' set but not used [-Wunused-but-set-variable]
-   35 |         int i,i1,j,s,**genes,**seg,comp,cs,nc,locus1;
-      |                                               ^~~~~~
 param_lex.c: In function 'yy_get_next_buffer':
 param_lex.c:641:32: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
   641 |                 for ( n = 0; n < max_size && \
@@ -576,8 +597,18 @@
 param_lex.c:1260:17: warning: 'yyunput' defined but not used [-Wunused-function]
  1260 |     static void yyunput (int c, register char * yy_bp )
       |                 ^~~~~~~
-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_sample.o loki_sample.c
-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_pen.o loki_pen.c
+gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -DIBD_COMPRESS_PROG=\"/usr/bin/gzip\" loki_ibd.c
+gen_pen.c: In function 'calc_degree':
+gen_pen.c:321:31: warning: variable 'k2' set but not used [-Wunused-but-set-variable]
+  321 |         int i1,j,j1,j2,k=0,k1,k2;
+      |                               ^~
+gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o get_founders.o get_founders.c
+gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o pass_founder_genes.o pass_founder_genes.c
+gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki.o loki.c
+pass_founder_genes.c: In function 'pass_founder_genes':
+pass_founder_genes.c:35:47: warning: variable 'locus1' set but not used [-Wunused-but-set-variable]
+   35 |         int i,i1,j,s,**genes,**seg,comp,cs,nc,locus1;
+      |                                               ^~~~~~
 param_lex.l: In function 'yylex':
 param_lex.l:91:11: warning: 'strncpy' specified bound 512 equals destination size [-Wstringop-truncation]
    91 |     (void)strncpy(linebuf,yytext+1,512);
@@ -585,43 +616,60 @@
 param_lex.l:64:11: warning: 'strncpy' specified bound 512 equals destination size [-Wstringop-truncation]
    64 |     (void)strncpy(linebuf,yytext,512);
       |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
+gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_peel.o loki_peel.c
+gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_init.o loki_init.c
+loki_init.c: In function 'InitValues':
+loki_init.c:125:38: warning: this statement may fall through [-Wimplicit-fallthrough=]
+  125 |                         tau_beta[mod]*=residual_var[mod];
+      |                         ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
+loki_init.c:126:18: note: here
+  126 |                  case 1:
+      |                  ^~~~
+gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o alloc_loki.o alloc_loki.c
+gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_sample.o loki_sample.c
+gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_pen.o loki_pen.c
 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_tlmoves.o loki_tlmoves.c
+loki_tlmoves.c: In function 'sample_mpos':
+loki_tlmoves.c:152:36: warning: variable 'idd' set but not used [-Wunused-but-set-variable]
+  152 |         int i,j,locus,k2=-1,k3,ids,idd,sx,**seg,s,s1;
+      |                                    ^~~
+loki_peel.c: In function 'peel_locus':
+loki_peel.c:427:43: warning: 'z' may be used uninitialized [-Wmaybe-uninitialized]
+  427 |                                         if(z== -DBL_MAX) {
+      |                                           ^
+loki_peel.c:145:26: note: 'z' was declared here
+  145 |    double like=0.0,like1,z,z1,theta,Mtp[2],Ptp[2],*pos,*eff,**count,*tpp,*freq1,*count1;
+      |                          ^
 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o meiosis_scan.o meiosis_scan.c
+loki_tlmoves.c:210:61: warning: 'x' may be used uninitialized [-Wmaybe-uninitialized]
+  210 |                                         r=.5*(1.0-exp(.02*(x-x1)));
+      |                                                           ~~^~~~
+loki_tlmoves.c:153:48: note: 'x' was declared here
+  153 |         double pp[2][50],ct1[2][50],ct2[2][50],x,x1,r,z,z1;
+      |                                                ^
 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_identity.o loki_identity.c
+meiosis_scan.c: In function 'meiosis_scan':
+meiosis_scan.c:162:76: warning: variable 'n_comp1' set but not used [-Wunused-but-set-variable]
+  162 |         int sex,kid,**seg,**seg1,kid1,nkids1,*kids1,lffg,symflag,n_qtl,qtl,n_comp1;
+      |                                                                            ^~~~~~~
 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o sample_rand.o sample_rand.c
 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o sample_effects.o sample_effects.c
 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_setup.o loki_setup.c
 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_dump.o loki_dump.c
-loki_tlmoves.c: In function 'sample_mpos':
-loki_tlmoves.c:152:36: warning: variable 'idd' set but not used [-Wunused-but-set-variable]
-  152 |         int i,j,locus,k2=-1,k3,ids,idd,sx,**seg,s,s1;
-      |                                    ^~~
 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o sample_cens.o sample_cens.c
+loki_tlmoves.c: In function 'get_tl_position':
+loki_tlmoves.c:623:17: warning: 'z' may be used uninitialized [-Wmaybe-uninitialized]
+  623 |         prior[i]+=z;
+      |                 ^~
+loki_tlmoves.c:606:16: note: 'z' was declared here
+  606 |         double z,z1,z2,map_length;
+      |                ^
 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o handle_res.o handle_res.c
 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o print_data.o print_data.c
 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o calc_var_locus.o calc_var_locus.c
-meiosis_scan.c: In function 'meiosis_scan':
-meiosis_scan.c:162:76: warning: variable 'n_comp1' set but not used [-Wunused-but-set-variable]
-  162 |         int sex,kid,**seg,**seg1,kid1,nkids1,*kids1,lffg,symflag,n_qtl,qtl,n_comp1;
-      |                                                                            ^~~~~~~
 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_output.o loki_output.c
-loki_init.c: In function 'InitValues':
-loki_init.c:125:38: warning: this statement may fall through [-Wimplicit-fallthrough=]
-  125 |                         tau_beta[mod]*=residual_var[mod];
-      |                         ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
-loki_init.c:126:18: note: here
-  126 |                  case 1:
-      |                  ^~~~
 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o sample_nu.o sample_nu.c
 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_complex_peel.o loki_complex_peel.c
-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_npl.o loki_npl.c
-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_simple_sample.o loki_simple_sample.c
-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_simple_peel.o loki_simple_peel.c
-loki_complex_peel.c: In function 'loki_complex_peelop':
-loki_complex_peel.c:379:16: warning: variable 'max_terms' set but not used [-Wunused-but-set-variable]
-  379 |         double max_terms,*tp,prob=0.0,z,p1,Konst=0.0;
-      |                ^~~~~~~~~
-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_trait_simple_peel.o loki_trait_simple_peel.c
 loki_output.c: In function 'OutputSample':
 loki_output.c:345:17: warning: this statement may fall through [-Wimplicit-fallthrough=]
   345 |                 OutputSample_2(fptr,lp);
@@ -629,16 +677,14 @@
 loki_output.c:346:10: note: here
   346 |          case OUTPUT_VERSION_2_3:
       |          ^~~~
-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_trait_simple_sample.o loki_trait_simple_sample.c
-loki_tlmoves.c:210:61: warning: 'x' may be used uninitialized [-Wmaybe-uninitialized]
-  210 |                                         r=.5*(1.0-exp(.02*(x-x1)));
-      |                                                           ~~^~~~
-loki_tlmoves.c:153:48: note: 'x' was declared here
-  153 |         double pp[2][50],ct1[2][50],ct2[2][50],x,x1,r,z,z1;
-      |                                                ^
-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o get_par_probs.o get_par_probs.c
-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o read_solar_idfile.o read_solar_idfile.c
-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o peel_to_par.o peel_to_par.c
+gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_npl.o loki_npl.c
+loki_complex_peel.c: In function 'loki_complex_peelop':
+loki_complex_peel.c:379:16: warning: variable 'max_terms' set but not used [-Wunused-but-set-variable]
+  379 |         double max_terms,*tp,prob=0.0,z,p1,Konst=0.0;
+      |                ^~~~~~~~~
+gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_simple_sample.o loki_simple_sample.c
+gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_simple_peel.o loki_simple_peel.c
+gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_trait_simple_peel.o loki_trait_simple_peel.c
 loki_simple_sample.c: In function 'loki_simple_sample':
 loki_simple_sample.c:25:58: warning: variable 'tpp2' set but not used [-Wunused-but-set-variable]
    25 |         double *tp,p1,p2,z,z1,prob=0.0,pp[4],*tmp,*tpp1,*tpp2;
@@ -646,21 +692,13 @@
 loki_simple_sample.c:25:52: warning: variable 'tpp1' set but not used [-Wunused-but-set-variable]
    25 |         double *tp,p1,p2,z,z1,prob=0.0,pp[4],*tmp,*tpp1,*tpp2;
       |                                                    ^~~~
+gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o loki_trait_simple_sample.o loki_trait_simple_sample.c
+gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o get_par_probs.o get_par_probs.c
+gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o read_solar_idfile.o read_solar_idfile.c
+gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o peel_to_par.o peel_to_par.c
 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -Wdate-time -D_FORTIFY_SOURCE=2  -c -o update_segs.o update_segs.c
-loki_peel.c: In function 'peel_locus':
-loki_peel.c:427:43: warning: 'z' may be used uninitialized [-Wmaybe-uninitialized]
-  427 |                                         if(z== -DBL_MAX) {
-      |                                           ^
-loki_peel.c:145:26: note: 'z' was declared here
-  145 |    double like=0.0,like1,z,z1,theta,Mtp[2],Ptp[2],*pos,*eff,**count,*tpp,*freq1,*count1;
-      |                          ^
-loki_tlmoves.c: In function 'get_tl_position':
-loki_tlmoves.c:623:17: warning: 'z' may be used uninitialized [-Wmaybe-uninitialized]
-  623 |         prior[i]+=z;
-      |                 ^~
-loki_tlmoves.c:606:16: note: 'z' was declared here
-  606 |         double z,z1,z2,map_length;
-      |                ^
+/usr/bin/ar cr libloki.a param_parse.o param_lex.o read_binfiles.o loki_utils.o kinship.o genedrop.o mat_utils.o output_recomb.o seg_pen.o gen_pen.o loki_ibd.o get_founders.o pass_founder_genes.o
+/usr/bin/ranlib libloki.a
 loki_simple_peel.c: In function 'loki_simple_peelop':
 loki_simple_peel.c:601:54: warning: 'cm[0]' may be used uninitialized [-Wmaybe-uninitialized]
   601 |                                 id_set2[i]=(cm[X_MAT]&a1)?lump[X_MAT]:i;
@@ -687,8 +725,6 @@
 loki_simple_peel.c:723:28: note: 'cm[1]' was declared here
   723 |         lk_ulong a,b,a1,b1,cm[2],*tmp_idx,*tmp_idx1,*cmm[2],mask;
       |                            ^~
-/usr/bin/ar cr libloki.a param_parse.o param_lex.o read_binfiles.o loki_utils.o kinship.o genedrop.o mat_utils.o output_recomb.o seg_pen.o gen_pen.o loki_ibd.o get_founders.o pass_founder_genes.o
-/usr/bin/ranlib libloki.a
 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/loki-2.4.7.4=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include   -o loki loki.o loki_peel.o loki_init.o alloc_loki.o loki_sample.o loki_pen.o loki_tlmoves.o meiosis_scan.o loki_identity.o sample_rand.o sample_effects.o loki_setup.o loki_dump.o sample_cens.o handle_res.o print_data.o calc_var_locus.o loki_output.o sample_nu.o loki_complex_peel.o loki_npl.o loki_simple_sample.o loki_simple_peel.o loki_trait_simple_peel.o loki_trait_simple_sample.o get_par_probs.o read_solar_idfile.o peel_to_par.o update_segs.o -Wl,-z,relro -Wl,-z,now  -L. -L../libsrc -lloki -lgen -lm 
 make[2]: Leaving directory '/build/reproducible-path/loki-2.4.7.4/lokisrc'
 make[2]: Entering directory '/build/reproducible-path/loki-2.4.7.4/utils'
@@ -721,7 +757,7 @@
    debian/rules override_dh_auto_install-arch
 make[1]: Entering directory '/build/reproducible-path/loki-2.4.7.4'
 dh_auto_install -a
-	make -j22 install DESTDIR=/build/reproducible-path/loki-2.4.7.4/debian/tmp AM_UPDATE_INFO_DIR=no
+	make -j10 install DESTDIR=/build/reproducible-path/loki-2.4.7.4/debian/tmp AM_UPDATE_INFO_DIR=no
 make[2]: Entering directory '/build/reproducible-path/loki-2.4.7.4'
 for subdir in libsrc prepsrc lokisrc utils; do \
 (cd $subdir; make) \
@@ -841,8 +877,8 @@
    dh_md5sums
    dh_builddeb
 dpkg-deb: building package 'loki-dbgsym' in '../loki-dbgsym_2.4.7.4-12_i386.deb'.
-dpkg-deb: building package 'loki' in '../loki_2.4.7.4-12_i386.deb'.
 dpkg-deb: building package 'loki-doc' in '../loki-doc_2.4.7.4-12_all.deb'.
+dpkg-deb: building package 'loki' in '../loki_2.4.7.4-12_i386.deb'.
  dpkg-genbuildinfo --build=binary -O../loki_2.4.7.4-12_i386.buildinfo
  dpkg-genchanges --build=binary -O../loki_2.4.7.4-12_i386.changes
 dpkg-genchanges: info: binary-only upload (no source code included)
@@ -850,12 +886,14 @@
 dpkg-buildpackage: info: binary-only upload (no source included)
 dpkg-genchanges: info: not including original source code in upload
 I: copying local configuration
+I: user script /srv/workspace/pbuilder/41262/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/41262/tmp/hooks/B01_cleanup finished
 I: unmounting dev/ptmx filesystem
 I: unmounting dev/pts filesystem
 I: unmounting dev/shm filesystem
 I: unmounting proc filesystem
 I: unmounting sys filesystem
 I: cleaning the build env 
-I: removing directory /srv/workspace/pbuilder/50544 and its subdirectories
-I: Current time: Sat Jan 24 02:46:22 -12 2026
-I: pbuilder-time-stamp: 1769265982
+I: removing directory /srv/workspace/pbuilder/41262 and its subdirectories
+I: Current time: Sun Dec 22 22:25:16 +14 2024
+I: pbuilder-time-stamp: 1734855916