Diff of the two buildlogs:
--
--- b1/build.log 2025-01-29 04:24:58.084104899 +0000
+++ b2/build.log 2025-01-29 04:27:12.993995833 +0000
@@ -1,6 +1,6 @@
I: pbuilder: network access will be disabled during build
-I: Current time: Mon Mar 2 22:46:40 -12 2026
-I: pbuilder-time-stamp: 1772534800
+I: Current time: Wed Jan 29 18:25:00 +14 2025
+I: pbuilder-time-stamp: 1738124700
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
@@ -23,54 +23,86 @@
dpkg-source: info: unpacking libpdb-redo_3.2.1-1.debian.tar.xz
I: Not using root during the build.
I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/74207/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/18743/tmp/hooks/D01_modify_environment starting
+debug: Running on ionos12-i386.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+'/bin/sh' -> '/bin/bash'
+lrwxrwxrwx 1 root root 9 Jan 29 04:25 /bin/sh -> /bin/bash
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/18743/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/18743/tmp/hooks/D02_print_environment starting
I: set
- BUILDDIR='/build/reproducible-path'
- BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
- BUILDUSERNAME='pbuilder1'
- BUILD_ARCH='i386'
- DEBIAN_FRONTEND='noninteractive'
- DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 '
- DISTRIBUTION='unstable'
- HOME='/root'
- HOST_ARCH='i386'
+ BASH=/bin/sh
+ BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
+ BASH_ALIASES=()
+ BASH_ARGC=()
+ BASH_ARGV=()
+ BASH_CMDS=()
+ BASH_LINENO=([0]="12" [1]="0")
+ BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
+ BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
+ BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="i686-pc-linux-gnu")
+ BASH_VERSION='5.2.37(1)-release'
+ BUILDDIR=/build/reproducible-path
+ BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+ BUILDUSERNAME=pbuilder2
+ BUILD_ARCH=i386
+ DEBIAN_FRONTEND=noninteractive
+ DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=10 '
+ DIRSTACK=()
+ DISTRIBUTION=unstable
+ EUID=0
+ FUNCNAME=([0]="Echo" [1]="main")
+ GROUPS=()
+ HOME=/root
+ HOSTNAME=i-capture-the-hostname
+ HOSTTYPE=i686
+ HOST_ARCH=i386
IFS='
'
- INVOCATION_ID='400786dbf4594894b4f63e6167ae891e'
- LANG='C'
- LANGUAGE='en_US:en'
- LC_ALL='C'
- LD_LIBRARY_PATH='/usr/lib/libeatmydata'
- LD_PRELOAD='libeatmydata.so'
- MAIL='/var/mail/root'
- OPTIND='1'
- PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
- PBCURRENTCOMMANDLINEOPERATION='build'
- PBUILDER_OPERATION='build'
- PBUILDER_PKGDATADIR='/usr/share/pbuilder'
- PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
- PBUILDER_SYSCONFDIR='/etc'
- PPID='74207'
- PS1='# '
- PS2='> '
+ INVOCATION_ID=442c6d5452ae47ed83bf4f552386f755
+ LANG=C
+ LANGUAGE=de_CH:de
+ LC_ALL=C
+ LD_LIBRARY_PATH=/usr/lib/libeatmydata
+ LD_PRELOAD=libeatmydata.so
+ MACHTYPE=i686-pc-linux-gnu
+ MAIL=/var/mail/root
+ OPTERR=1
+ OPTIND=1
+ OSTYPE=linux-gnu
+ PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
+ PBCURRENTCOMMANDLINEOPERATION=build
+ PBUILDER_OPERATION=build
+ PBUILDER_PKGDATADIR=/usr/share/pbuilder
+ PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
+ PBUILDER_SYSCONFDIR=/etc
+ PIPESTATUS=([0]="0")
+ POSIXLY_CORRECT=y
+ PPID=18743
PS4='+ '
- PWD='/'
- SHELL='/bin/bash'
- SHLVL='2'
- SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.d68IB0Ct/pbuilderrc_BgNa --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.d68IB0Ct/b1 --logfile b1/build.log libpdb-redo_3.2.1-1.dsc'
- SUDO_GID='112'
- SUDO_UID='107'
- SUDO_USER='jenkins'
- TERM='unknown'
- TZ='/usr/share/zoneinfo/Etc/GMT+12'
- USER='root'
- _='/usr/bin/systemd-run'
- http_proxy='http://213.165.73.152:3128'
+ PWD=/
+ SHELL=/bin/bash
+ SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
+ SHLVL=3
+ SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.d68IB0Ct/pbuilderrc_7AH9 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.d68IB0Ct/b2 --logfile b2/build.log libpdb-redo_3.2.1-1.dsc'
+ SUDO_GID=112
+ SUDO_UID=107
+ SUDO_USER=jenkins
+ TERM=unknown
+ TZ=/usr/share/zoneinfo/Etc/GMT-14
+ UID=0
+ USER=root
+ _='I: set'
+ http_proxy=http://46.16.76.132:3128
I: uname -a
- Linux ionos6-i386 6.1.0-30-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.124-1 (2025-01-12) x86_64 GNU/Linux
+ Linux i-capture-the-hostname 6.1.0-30-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.124-1 (2025-01-12) x86_64 GNU/Linux
I: ls -l /bin
- lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin
-I: user script /srv/workspace/pbuilder/74207/tmp/hooks/D02_print_environment finished
+ lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
+I: user script /srv/workspace/pbuilder/18743/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
@@ -225,7 +257,7 @@
Get: 93 http://deb.debian.org/debian unstable/main i386 libgsl-dev i386 2.8+dfsg-5 [1240 kB]
Get: 94 http://deb.debian.org/debian unstable/main i386 libnewuoa0 i386 0.1.2-1 [18.7 kB]
Get: 95 http://deb.debian.org/debian unstable/main i386 libnewuoa-dev i386 0.1.2-1 [7504 B]
-Fetched 76.5 MB in 1s (83.2 MB/s)
+Fetched 76.5 MB in 1s (61.7 MB/s)
Preconfiguring packages ...
Selecting previously unselected package libproc2-0:i386.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19829 files and directories currently installed.)
@@ -620,7 +652,11 @@
Building tag database...
-> Finished parsing the build-deps
I: Building the package
-I: Running cd /build/reproducible-path/libpdb-redo-3.2.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libpdb-redo_3.2.1-1_source.changes
+I: user script /srv/workspace/pbuilder/18743/tmp/hooks/A99_set_merged_usr starting
+Not re-configuring usrmerge for unstable
+I: user script /srv/workspace/pbuilder/18743/tmp/hooks/A99_set_merged_usr finished
+hostname: Name or service not known
+I: Running cd /build/reproducible-path/libpdb-redo-3.2.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libpdb-redo_3.2.1-1_source.changes
dpkg-buildpackage: info: source package libpdb-redo
dpkg-buildpackage: info: source version 3.2.1-1
dpkg-buildpackage: info: source distribution unstable
@@ -675,8 +711,8 @@
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success
--- Configuring done (2.4s)
--- Generating done (0.0s)
+-- Configuring done (4.0s)
+-- Generating done (0.1s)
CMake Warning:
Manually-specified variables were not used by the project:
@@ -689,7 +725,7 @@
-- Build files have been written to: /build/reproducible-path/libpdb-redo-3.2.1/obj-i686-linux-gnu
make[1]: Leaving directory '/build/reproducible-path/libpdb-redo-3.2.1'
dh_auto_build
- cd obj-i686-linux-gnu && make -j22 "INSTALL=install --strip-program=true" VERBOSE=1
+ cd obj-i686-linux-gnu && make -j10 "INSTALL=install --strip-program=true" VERBOSE=1
make[1]: Entering directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-i686-linux-gnu'
/usr/bin/cmake -S/build/reproducible-path/libpdb-redo-3.2.1 -B/build/reproducible-path/libpdb-redo-3.2.1/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libpdb-redo-3.2.1/obj-i686-linux-gnu/CMakeFiles /build/reproducible-path/libpdb-redo-3.2.1/obj-i686-linux-gnu//CMakeFiles/progress.marks
@@ -701,30 +737,30 @@
make[3]: Leaving directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-i686-linux-gnu'
make -f CMakeFiles/pdb-redo.dir/build.make CMakeFiles/pdb-redo.dir/build
make[3]: Entering directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-i686-linux-gnu'
-[ 5%] Building CXX object CMakeFiles/pdb-redo.dir/src/AtomShape.cpp.o
-[ 11%] Building CXX object CMakeFiles/pdb-redo.dir/src/Compound.cpp.o
-[ 17%] Building CXX object CMakeFiles/pdb-redo.dir/src/DistanceMap.cpp.o
+[ 5%] Building CXX object CMakeFiles/pdb-redo.dir/src/BondMap.cpp.o
+[ 17%] Building CXX object CMakeFiles/pdb-redo.dir/src/ClipperWrapper.cpp.o
+[ 23%] Building CXX object CMakeFiles/pdb-redo.dir/src/AtomShape.cpp.o
+[ 23%] Building CXX object CMakeFiles/pdb-redo.dir/src/DistanceMap.cpp.o
+[ 29%] Building CXX object CMakeFiles/pdb-redo.dir/src/MapMaker.cpp.o
+[ 41%] Building CXX object CMakeFiles/pdb-redo.dir/src/Ramachandran.cpp.o
+[ 41%] Building CXX object CMakeFiles/pdb-redo.dir/src/Compound.cpp.o
+/usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/reproducible-path/libpdb-redo-3.2.1/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/pdb-redo.dir/src/BondMap.cpp.o -MF CMakeFiles/pdb-redo.dir/src/BondMap.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/BondMap.cpp.o -c /build/reproducible-path/libpdb-redo-3.2.1/src/BondMap.cpp
+[ 47%] Building CXX object CMakeFiles/pdb-redo.dir/src/ResolutionCalculator.cpp.o
/usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/reproducible-path/libpdb-redo-3.2.1/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/pdb-redo.dir/src/AtomShape.cpp.o -MF CMakeFiles/pdb-redo.dir/src/AtomShape.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/AtomShape.cpp.o -c /build/reproducible-path/libpdb-redo-3.2.1/src/AtomShape.cpp
-[ 23%] Building CXX object CMakeFiles/pdb-redo.dir/src/Ramachandran.cpp.o
+/usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/reproducible-path/libpdb-redo-3.2.1/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/pdb-redo.dir/src/ClipperWrapper.cpp.o -MF CMakeFiles/pdb-redo.dir/src/ClipperWrapper.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/ClipperWrapper.cpp.o -c /build/reproducible-path/libpdb-redo-3.2.1/src/ClipperWrapper.cpp
+[ 52%] Building CXX object CMakeFiles/pdb-redo.dir/src/SkipList.cpp.o
/usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/reproducible-path/libpdb-redo-3.2.1/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/pdb-redo.dir/src/Compound.cpp.o -MF CMakeFiles/pdb-redo.dir/src/Compound.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/Compound.cpp.o -c /build/reproducible-path/libpdb-redo-3.2.1/src/Compound.cpp
/usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/reproducible-path/libpdb-redo-3.2.1/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/pdb-redo.dir/src/DistanceMap.cpp.o -MF CMakeFiles/pdb-redo.dir/src/DistanceMap.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/DistanceMap.cpp.o -c /build/reproducible-path/libpdb-redo-3.2.1/src/DistanceMap.cpp
-[ 29%] Building CXX object CMakeFiles/pdb-redo.dir/src/ResolutionCalculator.cpp.o
-[ 41%] Building CXX object CMakeFiles/pdb-redo.dir/src/MapMaker.cpp.o
+[ 58%] Building CXX object CMakeFiles/pdb-redo.dir/src/Statistics.cpp.o
+/usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/reproducible-path/libpdb-redo-3.2.1/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/pdb-redo.dir/src/MapMaker.cpp.o -MF CMakeFiles/pdb-redo.dir/src/MapMaker.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/MapMaker.cpp.o -c /build/reproducible-path/libpdb-redo-3.2.1/src/MapMaker.cpp
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-[ 41%] Building CXX object CMakeFiles/pdb-redo.dir/src/Statistics.cpp.o
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-[ 47%] Building CXX object CMakeFiles/pdb-redo.dir/src/Version.cpp.o
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-[ 52%] Building CXX object CMakeFiles/pdb-redo.dir/src/BondMap.cpp.o
-[ 58%] Building CXX object CMakeFiles/pdb-redo.dir/src/ClipperWrapper.cpp.o
-/usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/reproducible-path/libpdb-redo-3.2.1/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/pdb-redo.dir/src/BondMap.cpp.o -MF CMakeFiles/pdb-redo.dir/src/BondMap.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/BondMap.cpp.o -c /build/reproducible-path/libpdb-redo-3.2.1/src/BondMap.cpp
-/usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/reproducible-path/libpdb-redo-3.2.1/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/pdb-redo.dir/src/ClipperWrapper.cpp.o -MF CMakeFiles/pdb-redo.dir/src/ClipperWrapper.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/ClipperWrapper.cpp.o -c /build/reproducible-path/libpdb-redo-3.2.1/src/ClipperWrapper.cpp
-[ 64%] Building CXX object CMakeFiles/pdb-redo.dir/src/SkipList.cpp.o
-[ 70%] Building CXX object CMakeFiles/pdb-redo.dir/src/TLS.cpp.o
/usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/reproducible-path/libpdb-redo-3.2.1/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/pdb-redo.dir/src/SkipList.cpp.o -MF CMakeFiles/pdb-redo.dir/src/SkipList.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/SkipList.cpp.o -c /build/reproducible-path/libpdb-redo-3.2.1/src/SkipList.cpp
+/usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/reproducible-path/libpdb-redo-3.2.1/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/pdb-redo.dir/src/Statistics.cpp.o -MF CMakeFiles/pdb-redo.dir/src/Statistics.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/Statistics.cpp.o -c /build/reproducible-path/libpdb-redo-3.2.1/src/Statistics.cpp
+[ 64%] Building CXX object CMakeFiles/pdb-redo.dir/src/TLS.cpp.o
/usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/reproducible-path/libpdb-redo-3.2.1/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/pdb-redo.dir/src/TLS.cpp.o -MF CMakeFiles/pdb-redo.dir/src/TLS.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/TLS.cpp.o -c /build/reproducible-path/libpdb-redo-3.2.1/src/TLS.cpp
+[ 70%] Building CXX object CMakeFiles/pdb-redo.dir/src/Version.cpp.o
+/usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Dpdb_redo_EXPORTS -I/build/reproducible-path/libpdb-redo-3.2.1/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/pdb-redo.dir/src/Version.cpp.o -MF CMakeFiles/pdb-redo.dir/src/Version.cpp.o.d -o CMakeFiles/pdb-redo.dir/src/Version.cpp.o -c /build/reproducible-path/libpdb-redo-3.2.1/src/Version.cpp
[ 76%] Linking CXX shared library libpdb-redo.so
/usr/bin/cmake -E cmake_link_script CMakeFiles/pdb-redo.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,--dependency-file=CMakeFiles/pdb-redo.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libpdb-redo.so.3.2 -o libpdb-redo.so.3.2.1 "CMakeFiles/pdb-redo.dir/src/AtomShape.cpp.o" "CMakeFiles/pdb-redo.dir/src/BondMap.cpp.o" "CMakeFiles/pdb-redo.dir/src/ClipperWrapper.cpp.o" "CMakeFiles/pdb-redo.dir/src/Compound.cpp.o" "CMakeFiles/pdb-redo.dir/src/DistanceMap.cpp.o" "CMakeFiles/pdb-redo.dir/src/MapMaker.cpp.o" "CMakeFiles/pdb-redo.dir/src/Ramachandran.cpp.o" "CMakeFiles/pdb-redo.dir/src/ResolutionCalculator.cpp.o" "CMakeFiles/pdb-redo.dir/src/SkipList.cpp.o" "CMakeFiles/pdb-redo.dir/src/Statistics.cpp.o" "CMakeFiles/pdb-redo.dir/src/TLS.cpp.o" "CMakeFiles/pdb-redo.dir/src/Version.cpp.o" /usr/lib/i386-linux-gnu/libcifpp.so.7.0.9 /usr/lib/i386-linux-gnu/libnewuoa.so.0.1.2 /usr/lib/i386-linux-gnu/libclipper-ccp4.so /usr/lib/i386-linux-gnu/libclipper-contrib.so /usr/lib/i386-linux-gnu/libclipper-core.so /usr/lib/i386-linux-gnu/libccp4c.so /usr/lib/i386-linux-gnu/libz.so
@@ -734,9 +770,9 @@
make -f test/CMakeFiles/pdb-redo-unit-test.dir/build.make test/CMakeFiles/pdb-redo-unit-test.dir/depend
make -f test/CMakeFiles/restr2ccd-test.dir/build.make test/CMakeFiles/restr2ccd-test.dir/depend
make[3]: Entering directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-i686-linux-gnu'
-cd /build/reproducible-path/libpdb-redo-3.2.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libpdb-redo-3.2.1 /build/reproducible-path/libpdb-redo-3.2.1/test /build/reproducible-path/libpdb-redo-3.2.1/obj-i686-linux-gnu /build/reproducible-path/libpdb-redo-3.2.1/obj-i686-linux-gnu/test /build/reproducible-path/libpdb-redo-3.2.1/obj-i686-linux-gnu/test/CMakeFiles/pdb-redo-unit-test.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-i686-linux-gnu'
cd /build/reproducible-path/libpdb-redo-3.2.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libpdb-redo-3.2.1 /build/reproducible-path/libpdb-redo-3.2.1/test /build/reproducible-path/libpdb-redo-3.2.1/obj-i686-linux-gnu /build/reproducible-path/libpdb-redo-3.2.1/obj-i686-linux-gnu/test /build/reproducible-path/libpdb-redo-3.2.1/obj-i686-linux-gnu/test/CMakeFiles/restr2ccd-test.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/libpdb-redo-3.2.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libpdb-redo-3.2.1 /build/reproducible-path/libpdb-redo-3.2.1/test /build/reproducible-path/libpdb-redo-3.2.1/obj-i686-linux-gnu /build/reproducible-path/libpdb-redo-3.2.1/obj-i686-linux-gnu/test /build/reproducible-path/libpdb-redo-3.2.1/obj-i686-linux-gnu/test/CMakeFiles/pdb-redo-unit-test.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-i686-linux-gnu'
make[3]: Leaving directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-i686-linux-gnu'
make -f test/CMakeFiles/restr2ccd-test.dir/build.make test/CMakeFiles/restr2ccd-test.dir/build
@@ -745,8 +781,8 @@
make[3]: Entering directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-i686-linux-gnu'
[ 88%] Building CXX object test/CMakeFiles/pdb-redo-unit-test.dir/pdb-redo-unit-test.cpp.o
[ 88%] Building CXX object test/CMakeFiles/restr2ccd-test.dir/restr2ccd-test.cpp.o
-cd /build/reproducible-path/libpdb-redo-3.2.1/obj-i686-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -I/build/reproducible-path/libpdb-redo-3.2.1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/pdb-redo-unit-test.dir/pdb-redo-unit-test.cpp.o -MF CMakeFiles/pdb-redo-unit-test.dir/pdb-redo-unit-test.cpp.o.d -o CMakeFiles/pdb-redo-unit-test.dir/pdb-redo-unit-test.cpp.o -c /build/reproducible-path/libpdb-redo-3.2.1/test/pdb-redo-unit-test.cpp
cd /build/reproducible-path/libpdb-redo-3.2.1/obj-i686-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -I/build/reproducible-path/libpdb-redo-3.2.1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/restr2ccd-test.dir/restr2ccd-test.cpp.o -MF CMakeFiles/restr2ccd-test.dir/restr2ccd-test.cpp.o.d -o CMakeFiles/restr2ccd-test.dir/restr2ccd-test.cpp.o -c /build/reproducible-path/libpdb-redo-3.2.1/test/restr2ccd-test.cpp
+cd /build/reproducible-path/libpdb-redo-3.2.1/obj-i686-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -I/build/reproducible-path/libpdb-redo-3.2.1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/pdb-redo-unit-test.dir/pdb-redo-unit-test.cpp.o -MF CMakeFiles/pdb-redo-unit-test.dir/pdb-redo-unit-test.cpp.o.d -o CMakeFiles/pdb-redo-unit-test.dir/pdb-redo-unit-test.cpp.o -c /build/reproducible-path/libpdb-redo-3.2.1/test/pdb-redo-unit-test.cpp
[ 94%] Linking CXX executable restr2ccd-test
cd /build/reproducible-path/libpdb-redo-3.2.1/obj-i686-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/restr2ccd-test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libpdb-redo-3.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/restr2ccd-test.dir/link.d "CMakeFiles/restr2ccd-test.dir/restr2ccd-test.cpp.o" -o restr2ccd-test -Wl,-rpath,/build/reproducible-path/libpdb-redo-3.2.1/obj-i686-linux-gnu ../libpdb-redo.so.3.2.1 /usr/lib/libCatch2.a /usr/lib/i386-linux-gnu/libcifpp.so.7.0.9 /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libnewuoa.so.0.1.2 /usr/lib/i386-linux-gnu/libclipper-ccp4.so /usr/lib/i386-linux-gnu/libclipper-contrib.so /usr/lib/i386-linux-gnu/libclipper-core.so /usr/lib/i386-linux-gnu/libccp4c.so
@@ -761,10 +797,10 @@
/usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libpdb-redo-3.2.1/obj-i686-linux-gnu/CMakeFiles 0
make[1]: Leaving directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-i686-linux-gnu'
dh_auto_test
- cd obj-i686-linux-gnu && make -j22 test ARGS\+=--verbose ARGS\+=-j22
+ cd obj-i686-linux-gnu && make -j10 test ARGS\+=--verbose ARGS\+=-j10
make[1]: Entering directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-i686-linux-gnu'
Running tests...
-/usr/bin/ctest --force-new-ctest-process --verbose -j22
+/usr/bin/ctest --force-new-ctest-process --verbose -j10
UpdateCTestConfiguration from :/build/reproducible-path/libpdb-redo-3.2.1/obj-i686-linux-gnu/DartConfiguration.tcl
Parse Config file:/build/reproducible-path/libpdb-redo-3.2.1/obj-i686-linux-gnu/DartConfiguration.tcl
UpdateCTestConfiguration from :/build/reproducible-path/libpdb-redo-3.2.1/obj-i686-linux-gnu/DartConfiguration.tcl
@@ -790,7 +826,7 @@
2: Working Directory: /build/reproducible-path/libpdb-redo-3.2.1/obj-i686-linux-gnu/test
2: Test timeout computed to be: 1500
2: CCD components.cif resource was not found
-2: Randomness seeded to: 2047299529
+2: Randomness seeded to: 2534757975
2: Could not load the mon_lib_list.cif file from CCP4, please make sure you have installed CCP4 and sourced the environment.
2:
2: Configuration error:
@@ -825,8 +861,8 @@
2: ===============================================================================
2: All tests passed (12 assertions in 1 test case)
2:
-1/2 Test #2: restr2ccd-test ................... Passed 0.01 sec
-1: Randomness seeded to: 1239921945
+1/2 Test #2: restr2ccd-test ................... Passed 0.02 sec
+1: Randomness seeded to: 2526921927
1: Reading map from "/build/reproducible-path/libpdb-redo-3.2.1/test/../examples/1cbs_map.mtz"
1: with labels: FB: FWT,PHWT
1: with labels: FD: DELFWT,PHDELWT
@@ -971,16 +1007,16 @@
1: ===============================================================================
1: All tests passed (738136 assertions in 7 test cases)
1:
-2/2 Test #1: pdb-redo-unit-test ............... Passed 4.21 sec
+2/2 Test #1: pdb-redo-unit-test ............... Passed 7.13 sec
100% tests passed, 0 tests failed out of 2
-Total Test time (real) = 4.22 sec
+Total Test time (real) = 7.14 sec
make[1]: Leaving directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-i686-linux-gnu'
create-stamp debian/debhelper-build-stamp
dh_prep
dh_auto_install
- cd obj-i686-linux-gnu && make -j22 install DESTDIR=/build/reproducible-path/libpdb-redo-3.2.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
+ cd obj-i686-linux-gnu && make -j10 install DESTDIR=/build/reproducible-path/libpdb-redo-3.2.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/build/reproducible-path/libpdb-redo-3.2.1/obj-i686-linux-gnu'
/usr/bin/cmake -S/build/reproducible-path/libpdb-redo-3.2.1 -B/build/reproducible-path/libpdb-redo-3.2.1/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
make -f CMakeFiles/Makefile2 preinstall
@@ -996,21 +1032,21 @@
-- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/lib/i386-linux-gnu/cmake/pdb-redo/pdb-redoTargets.cmake
-- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/lib/i386-linux-gnu/cmake/pdb-redo/pdb-redoTargets-none.cmake
-- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo
--- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/DistanceMap.hpp
--- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/Minimizer.hpp
--- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/Statistics.hpp
+-- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/AtomShape.hpp
-- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/ClipperWrapper.hpp
--- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/BondMap.hpp
+-- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/Ramachandran.hpp
+-- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/Restraints.hpp
+-- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/Version.hpp
-- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/ResolutionCalculator.hpp
+-- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/SkipList.hpp
+-- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/Statistics.hpp
+-- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/Compound.hpp
+-- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/Minimizer.hpp
-- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/MapMaker.hpp
+-- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/BondMap.hpp
-- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/TLS.hpp
--- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/Version.hpp
--- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/Restraints.hpp
--- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/Ramachandran.hpp
+-- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/DistanceMap.hpp
-- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/exports.hpp
--- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/SkipList.hpp
--- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/AtomShape.hpp
--- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/include/pdb-redo/Compound.hpp
-- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/lib/i386-linux-gnu/cmake/pdb-redo/pdb-redoConfig.cmake
-- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/lib/i386-linux-gnu/cmake/pdb-redo/pdb-redoConfigVersion.cmake
-- Installing: /build/reproducible-path/libpdb-redo-3.2.1/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig/libpdb-redo.pc
@@ -1033,8 +1069,8 @@
dh_gencontrol
dh_md5sums
dh_builddeb
-dpkg-deb: building package 'libpdb-redo-dev' in '../libpdb-redo-dev_3.2.1-1_i386.deb'.
dpkg-deb: building package 'libpdb-redo3' in '../libpdb-redo3_3.2.1-1_i386.deb'.
+dpkg-deb: building package 'libpdb-redo-dev' in '../libpdb-redo-dev_3.2.1-1_i386.deb'.
dpkg-deb: building package 'libpdb-redo3-dbgsym' in '../libpdb-redo3-dbgsym_3.2.1-1_i386.deb'.
dpkg-genbuildinfo --build=binary -O../libpdb-redo_3.2.1-1_i386.buildinfo
dpkg-genchanges --build=binary -O../libpdb-redo_3.2.1-1_i386.changes
@@ -1043,12 +1079,14 @@
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
+I: user script /srv/workspace/pbuilder/18743/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/18743/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
-I: removing directory /srv/workspace/pbuilder/74207 and its subdirectories
-I: Current time: Mon Mar 2 22:47:57 -12 2026
-I: pbuilder-time-stamp: 1772534877
+I: removing directory /srv/workspace/pbuilder/18743 and its subdirectories
+I: Current time: Wed Jan 29 18:27:12 +14 2025
+I: pbuilder-time-stamp: 1738124832