Diff of the two buildlogs: -- --- b1/build.log 2024-12-13 17:14:44.355173183 +0000 +++ b2/build.log 2024-12-13 17:16:11.547203312 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Dec 13 05:12:42 -12 2024 -I: pbuilder-time-stamp: 1734109962 +I: Current time: Fri Jan 16 13:37:47 +14 2026 +I: pbuilder-time-stamp: 1768520267 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -28,54 +28,85 @@ dpkg-source: info: applying fix-underlinking.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/59114/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/12032/tmp/hooks/D01_modify_environment starting +debug: Running on infom08-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jan 15 23:37 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/12032/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/12032/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=5 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='4fa714ccbba24217adc922c5b8ab1463' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='59114' - PS1='# ' - PS2='> ' + INVOCATION_ID=bd69863bff684c3d9bcbdf00212845bd + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=12032 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Fu7lOUIs/pbuilderrc_9ZwE --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Fu7lOUIs/b1 --logfile b1/build.log libghemical_3.0.0-4.4.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Fu7lOUIs/pbuilderrc_mJJC --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Fu7lOUIs/b2 --logfile b2/build.log libghemical_3.0.0-4.4.dsc' + SUDO_GID=111 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux ionos2-i386 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/59114/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/12032/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -317,7 +348,7 @@ Get: 183 http://deb.debian.org/debian unstable/main i386 libsc-dev i386 2.3.1-22+b2 [291 kB] Get: 184 http://deb.debian.org/debian unstable/main i386 mesa-common-dev i386 24.2.8-1 [2700 kB] Get: 185 http://deb.debian.org/debian unstable/main i386 pkg-config i386 1.8.1-4 [14.0 kB] -Fetched 135 MB in 4s (32.5 MB/s) +Fetched 135 MB in 1s (102 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package m4. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19952 files and directories currently installed.) @@ -928,8 +959,8 @@ Setting up tzdata (2024b-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Fri Dec 13 17:13:24 UTC 2024. -Universal Time is now: Fri Dec 13 17:13:24 UTC 2024. +Local time is now: Thu Jan 15 23:38:15 UTC 2026. +Universal Time is now: Thu Jan 15 23:38:15 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libxcb-present0:i386 (1.17.0-2+b1) ... @@ -1108,7 +1139,11 @@ fakeroot is already the newest version (1.36-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/libghemical-3.0.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libghemical_3.0.0-4.4_source.changes +I: user script /srv/workspace/pbuilder/12032/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/12032/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/libghemical-3.0.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libghemical_3.0.0-4.4_source.changes dpkg-buildpackage: info: source package libghemical dpkg-buildpackage: info: source version 3.0.0-4.4 dpkg-buildpackage: info: source distribution unstable @@ -1311,7 +1346,7 @@ checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for ar... /usr/bin/ar -checking for sh... /bin/bash +checking for sh... /bin/sh checking whether make sets $(MAKE)... (cached) yes checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes @@ -1384,65 +1419,22 @@ config.status: executing po/stamp-it commands make[1]: Leaving directory '/build/reproducible-path/libghemical-3.0.0' dh_auto_build - make -j11 + make -j5 make[1]: Entering directory '/build/reproducible-path/libghemical-3.0.0' Making all in src make[2]: Entering directory '/build/reproducible-path/libghemical-3.0.0/src' make all-am make[3]: Entering directory '/build/reproducible-path/libghemical-3.0.0/src' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atom.lo atom.cpp -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bond.lo bond.cpp -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o constraint.lo constraint.cpp -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o model.lo model.cpp -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o engine.lo engine.cpp -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o typerule.lo typerule.cpp -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o utility.lo utility.cpp -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o chn_info.lo chn_info.cpp -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o seqbuild.lo seqbuild.cpp -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mfinder.lo mfinder.cpp -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o eng1_qm.lo eng1_qm.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c typerule.cpp -fPIC -DPIC -o .libs/typerule.o -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c bond.cpp -fPIC -DPIC -o .libs/bond.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atom.lo atom.cpp +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bond.lo bond.cpp +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o constraint.lo constraint.cpp +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o model.lo model.cpp +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o engine.lo engine.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c atom.cpp -fPIC -DPIC -o .libs/atom.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c engine.cpp -fPIC -DPIC -o .libs/engine.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c constraint.cpp -fPIC -DPIC -o .libs/constraint.o -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_qm.cpp -fPIC -DPIC -o .libs/eng1_qm.o -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c chn_info.cpp -fPIC -DPIC -o .libs/chn_info.o -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c seqbuild.cpp -fPIC -DPIC -o .libs/seqbuild.o -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c mfinder.cpp -fPIC -DPIC -o .libs/mfinder.o +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c bond.cpp -fPIC -DPIC -o .libs/bond.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c model.cpp -fPIC -DPIC -o .libs/model.o -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c utility.cpp -fPIC -DPIC -o .libs/utility.o -In file included from local_i18n.h:38, - from eng1_qm.cpp:27: -libghemicalconfig.h:102:9: warning: "PACKAGE_NAME" redefined - 102 | #define PACKAGE_NAME "libghemical" - | ^~~~~~~~~~~~ -In file included from /usr/include/sc/util/misc/exenv.h:37, - from /usr/include/sc/util/class/class.h:46, - from /usr/include/sc/util/keyval/keyval.h:42, - from eng1_qm_mpqc.h:37, - from eng1_qm.cpp:24: -/usr/include/sc/scconfig.h:281:9: note: this is the location of the previous definition - 281 | #define PACKAGE_NAME "" - | ^~~~~~~~~~~~ -libghemicalconfig.h:105:9: warning: "PACKAGE_STRING" redefined - 105 | #define PACKAGE_STRING "libghemical 3.0.0" - | ^~~~~~~~~~~~~~ -/usr/include/sc/scconfig.h:284:9: note: this is the location of the previous definition - 284 | #define PACKAGE_STRING "" - | ^~~~~~~~~~~~~~ -libghemicalconfig.h:108:9: warning: "PACKAGE_TARNAME" redefined - 108 | #define PACKAGE_TARNAME "libghemical" - | ^~~~~~~~~~~~~~~ -/usr/include/sc/scconfig.h:287:9: note: this is the location of the previous definition - 287 | #define PACKAGE_TARNAME "" - | ^~~~~~~~~~~~~~~ -libghemicalconfig.h:114:9: warning: "PACKAGE_VERSION" redefined - 114 | #define PACKAGE_VERSION "3.0.0" - | ^~~~~~~~~~~~~~~ -/usr/include/sc/scconfig.h:293:9: note: this is the location of the previous definition - 293 | #define PACKAGE_VERSION "" - | ^~~~~~~~~~~~~~~ In file included from local_i18n.h:38, from model.cpp:46: libghemicalconfig.h:102:9: warning: "PACKAGE_NAME" redefined @@ -1478,7 +1470,8 @@ atom.cpp:33:44: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 33 | element element::current_element = element("C"); | ^~~ -In file included from eng1_qm.cpp:22: +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c constraint.cpp -o constraint.o >/dev/null 2>&1 +In file included from model.cpp:31: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng1_qm.h:128:155: warning: no return statement in function returning non-void [-Wreturn-type] 128 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } @@ -1487,8 +1480,39 @@ eng1_qm.h:129:142: warning: no return statement in function returning non-void [-Wreturn-type] 129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c chn_info.cpp -o chn_info.o >/dev/null 2>&1 -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c constraint.cpp -o constraint.o >/dev/null 2>&1 +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c atom.cpp -o atom.o >/dev/null 2>&1 +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c bond.cpp -o bond.o >/dev/null 2>&1 +eng2_qm_mm.h: In member function 'virtual bool eng2_qm_mm_mopac::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': +eng2_qm_mm.h:90:155: warning: no return statement in function returning non-void [-Wreturn-type] + 90 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } + | ^ +eng2_qm_mm.h: In member function 'virtual bool eng2_qm_mm_mopac::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': +eng2_qm_mm.h:91:142: warning: no return statement in function returning non-void [-Wreturn-type] + 91 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } + | ^ +eng2_qm_mm.h: In member function 'virtual bool eng2_qm_mm_mpqc::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': +eng2_qm_mm.h:127:155: warning: no return statement in function returning non-void [-Wreturn-type] + 127 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } + | ^ +eng2_qm_mm.h: In member function 'virtual bool eng2_qm_mm_mpqc::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': +eng2_qm_mm.h:128:142: warning: no return statement in function returning non-void [-Wreturn-type] + 128 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } + | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o typerule.lo typerule.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c typerule.cpp -fPIC -DPIC -o .libs/typerule.o +model.cpp: In member function 'bool model::GetCRDSetVisible(i32u)': +model.cpp:319:30: warning: control reaches end of non-void function [-Wreturn-type] + 319 | else assertion_failed(__FILE__, __LINE__, "index overflow"); + | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o utility.lo utility.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c utility.cpp -fPIC -DPIC -o .libs/utility.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o chn_info.lo chn_info.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c chn_info.cpp -fPIC -DPIC -o .libs/chn_info.o +typerule.cpp: In member function 'i32s typerule::ReadSubRule(std::istream*, std::ostream*)': +typerule.cpp:172:56: warning: narrowing conversion of 'strlen(((const char*)((char*)(&((typerule*)this)->typerule::buffer))))' from 'size_t' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] + 172 | i32s tmp1[2] = { strlen(buffer), 0 }; + | ~~~~~~^~~~~~~~ +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c engine.cpp -o engine.o >/dev/null 2>&1 utility.cpp: In function 'void DefineSecondaryStructure(model*)': utility.cpp:308:42: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 308 | i32s tmp1[2] = { n1, n2 }; @@ -1502,15 +1526,6 @@ utility.cpp:349:79: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 349 | i32s t1a[2] = { n1, n2 - 1 }; i32s t1b[2] = { n1, n3 }; | ^~ -In file included from model.cpp:31: -eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': -eng1_qm.h:128:155: warning: no return statement in function returning non-void [-Wreturn-type] - 128 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } - | ^ -eng1_qm.h: In member function 'virtual bool eng1_qm::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': -eng1_qm.h:129:142: warning: no return statement in function returning non-void [-Wreturn-type] - 129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } - | ^ utility.cpp:352:49: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 352 | i32s t2a[2] = { n1, n3 }; i32s t2b[2] = { n1, n2 + 1 }; | ^~ @@ -1553,44 +1568,54 @@ utility.cpp:370:79: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 370 | i32s t8a[2] = { n1, n3 - 1 }; i32s t8b[2] = { n1, n2 + 1 }; | ^~ -typerule.cpp: In member function 'i32s typerule::ReadSubRule(std::istream*, std::ostream*)': -typerule.cpp:172:56: warning: narrowing conversion of 'strlen(((const char*)((char*)(&((typerule*)this)->typerule::buffer))))' from 'size_t' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] - 172 | i32s tmp1[2] = { strlen(buffer), 0 }; - | ~~~~~~^~~~~~~~ -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c atom.cpp -o atom.o >/dev/null 2>&1 -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c bond.cpp -o bond.o >/dev/null 2>&1 -eng2_qm_mm.h: In member function 'virtual bool eng2_qm_mm_mopac::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': -eng2_qm_mm.h:90:155: warning: no return statement in function returning non-void [-Wreturn-type] - 90 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } - | ^ -eng2_qm_mm.h: In member function 'virtual bool eng2_qm_mm_mopac::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': -eng2_qm_mm.h:91:142: warning: no return statement in function returning non-void [-Wreturn-type] - 91 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } - | ^ -eng2_qm_mm.h: In member function 'virtual bool eng2_qm_mm_mpqc::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': -eng2_qm_mm.h:127:155: warning: no return statement in function returning non-void [-Wreturn-type] - 127 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } - | ^ -eng2_qm_mm.h: In member function 'virtual bool eng2_qm_mm_mpqc::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': -eng2_qm_mm.h:128:142: warning: no return statement in function returning non-void [-Wreturn-type] - 128 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } - | ^ -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_qm.cpp -o eng1_qm.o >/dev/null 2>&1 +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c chn_info.cpp -o chn_info.o >/dev/null 2>&1 typerule.cpp:183:50: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 183 | newring[tmp1[1]] = 0; | ~~~~~~~~~~~~~~~~~^~~ typerule.cpp:182:84: note: at offset -1 into destination object of size 0 allocated by 'operator new []' 182 | signed char * newring = new signed char[tmp1[1] + 1]; | ^ -model.cpp: In member function 'bool model::GetCRDSetVisible(i32u)': -model.cpp:319:30: warning: control reaches end of non-void function [-Wreturn-type] - 319 | else assertion_failed(__FILE__, __LINE__, "index overflow"); - | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o eng1_qm_mpqc.lo eng1_qm_mpqc.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_qm_mpqc.cpp -fPIC -DPIC -o .libs/eng1_qm_mpqc.o +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c typerule.cpp -o typerule.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c utility.cpp -o utility.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o eng1_qm_mopac.lo eng1_qm_mopac.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c engine.cpp -o engine.o >/dev/null 2>&1 +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o seqbuild.lo seqbuild.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c seqbuild.cpp -fPIC -DPIC -o .libs/seqbuild.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time 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-fstack-protector-strong -Wformat -Werror=format-security -c -o eng1_qm.lo eng1_qm.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_qm.cpp -fPIC -DPIC -o .libs/eng1_qm.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o eng1_qm_mpqc.lo eng1_qm_mpqc.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_qm_mpqc.cpp -fPIC -DPIC -o .libs/eng1_qm_mpqc.o +In file included from local_i18n.h:38, + from eng1_qm.cpp:27: +libghemicalconfig.h:102:9: warning: "PACKAGE_NAME" redefined + 102 | #define PACKAGE_NAME "libghemical" + | ^~~~~~~~~~~~ +In file included from /usr/include/sc/util/misc/exenv.h:37, + from /usr/include/sc/util/class/class.h:46, + from /usr/include/sc/util/keyval/keyval.h:42, + from eng1_qm_mpqc.h:37, + from eng1_qm.cpp:24: +/usr/include/sc/scconfig.h:281:9: note: this is the location of the previous definition + 281 | #define PACKAGE_NAME "" + | ^~~~~~~~~~~~ +libghemicalconfig.h:105:9: warning: "PACKAGE_STRING" redefined + 105 | #define PACKAGE_STRING "libghemical 3.0.0" + | ^~~~~~~~~~~~~~ +/usr/include/sc/scconfig.h:284:9: note: this is the location of the previous definition + 284 | #define PACKAGE_STRING "" + | ^~~~~~~~~~~~~~ +libghemicalconfig.h:108:9: warning: "PACKAGE_TARNAME" redefined + 108 | #define PACKAGE_TARNAME "libghemical" + | ^~~~~~~~~~~~~~~ +/usr/include/sc/scconfig.h:287:9: note: this is the location of the previous definition + 287 | #define PACKAGE_TARNAME "" + | ^~~~~~~~~~~~~~~ +libghemicalconfig.h:114:9: warning: "PACKAGE_VERSION" redefined + 114 | #define PACKAGE_VERSION "3.0.0" + | ^~~~~~~~~~~~~~~ +/usr/include/sc/scconfig.h:293:9: note: this is the location of the previous definition + 293 | #define PACKAGE_VERSION "" + | ^~~~~~~~~~~~~~~ In file included from local_i18n.h:38, from eng1_qm_mpqc.cpp:24: libghemicalconfig.h:102:9: warning: "PACKAGE_NAME" redefined @@ -1650,12 +1675,15 @@ libghemicalconfig.h:114:9: note: this is the location of the previous definition 114 | #define PACKAGE_VERSION "3.0.0" | ^~~~~~~~~~~~~~~ -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_qm_mopac.cpp -fPIC -DPIC -o .libs/eng1_qm_mopac.o -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c typerule.cpp -o typerule.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o eng1_mm.lo eng1_mm.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_mm.cpp -fPIC -DPIC -o .libs/eng1_mm.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o eng1_mm_tripos52.lo eng1_mm_tripos52.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_mm_tripos52.cpp -fPIC -DPIC -o .libs/eng1_mm_tripos52.o +In file included from eng1_qm.cpp:22: +eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': +eng1_qm.h:128:155: warning: no return statement in function returning non-void [-Wreturn-type] + 128 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } + | ^ +eng1_qm.h: In member function 'virtual bool eng1_qm::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': +eng1_qm.h:129:142: warning: no return statement in function returning non-void [-Wreturn-type] + 129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } + | ^ In file included from eng1_qm_mpqc.h:32: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng1_qm.h:128:155: warning: no return statement in function returning non-void [-Wreturn-type] @@ -1665,6 +1693,11 @@ eng1_qm.h:129:142: warning: no return statement in function returning non-void [-Wreturn-type] 129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_qm.cpp -o eng1_qm.o >/dev/null 2>&1 +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c mfinder.cpp -o mfinder.o >/dev/null 2>&1 +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o eng1_qm_mopac.lo eng1_qm_mopac.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_qm_mopac.cpp -fPIC -DPIC -o .libs/eng1_qm_mopac.o +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_qm_mpqc.cpp -o eng1_qm_mpqc.o >/dev/null 2>&1 In file included from eng1_qm_mopac.h:30, from eng1_qm_mopac.cpp:22: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': @@ -1675,7 +1708,6 @@ eng1_qm.h:129:142: warning: no return statement in function returning non-void [-Wreturn-type] 129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c mfinder.cpp -o mfinder.o >/dev/null 2>&1 eng1_qm_mopac.cpp: In destructor 'eng1_qm_mopac::~eng1_qm_mopac()': eng1_qm_mopac.cpp:153:15: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 153 | system(cs_FOR005.str().c_str()); @@ -1697,31 +1729,40 @@ eng1_qm_mopac.cpp:181:15: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 181 | system(cs_SHUTDOWN.str().c_str()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o tab_mm_tripos52.lo tab_mm_tripos52.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 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eng1_mm_default.cpp -fPIC -DPIC -o .libs/eng1_mm_default.o +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c model.cpp -o model.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_qm_mopac.cpp -o eng1_qm_mopac.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi 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-fstack-protector-strong -Wformat -Werror=format-security -c -o eng2_qm_mm.lo eng2_qm_mm.cpp +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o eng2_qm_mm.lo eng2_qm_mm.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng2_qm_mm.cpp -fPIC -DPIC -o .libs/eng2_qm_mm.o -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c tab_mm_tripos52.cpp -o tab_mm_tripos52.o >/dev/null 2>&1 -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c seqbuild.cpp -o seqbuild.o >/dev/null 2>&1 In file included from local_i18n.h:38, from eng2_qm_mm.cpp:24: libghemicalconfig.h:102:9: warning: "PACKAGE_NAME" redefined @@ -1763,7 +1804,6 @@ eng1_qm.h:129:142: warning: no return statement in function returning non-void [-Wreturn-type] 129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_mm_tripos52.cpp -o eng1_mm_tripos52.o >/dev/null 2>&1 eng2_qm_mm.h: In member function 'virtual bool eng2_qm_mm_mopac::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng2_qm_mm.h:90:155: warning: no return statement in function returning non-void [-Wreturn-type] 90 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } @@ -1781,21 +1821,16 @@ 128 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng2_qm_mm.cpp -o eng2_qm_mm.o >/dev/null 2>&1 -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c tab_mm_prmfit.cpp -o tab_mm_prmfit.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile 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-DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_mm_default.cpp -o eng1_mm_default.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o intcrd.lo intcrd.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 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-I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c intcrd.cpp -fPIC -DPIC -o .libs/intcrd.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o search.lo search.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c search.cpp -fPIC -DPIC -o .libs/search.o -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c model.cpp -o model.o >/dev/null 2>&1 -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c tab_mm_default.cpp -o tab_mm_default.o >/dev/null 2>&1 +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c conjgrad.cpp -o conjgrad.o >/dev/null 2>&1 In file included from search.h:35, from search.cpp:22: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': @@ -1806,12 +1841,11 @@ eng1_qm.h:129:142: warning: no return statement in function returning non-void [-Wreturn-type] 129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c intcrd.cpp -o intcrd.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o geomopt.lo geomopt.cpp +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o geomopt.lo geomopt.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c geomopt.cpp -fPIC -DPIC -o .libs/geomopt.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o moldyn.lo moldyn.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c intcrd.cpp -o intcrd.o >/dev/null 2>&1 +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o moldyn.lo moldyn.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c moldyn.cpp -fPIC -DPIC -o .libs/moldyn.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o pop_ana.lo pop_ana.cpp In file included from geomopt.h:31, from geomopt.cpp:22: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': @@ -1822,13 +1856,14 @@ eng1_qm.h:129:142: warning: no return statement in function returning non-void [-Wreturn-type] 129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c pop_ana.cpp -fPIC -DPIC -o .libs/pop_ana.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c geomopt.cpp -o geomopt.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sasaeval.lo sasaeval.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c sasaeval.cpp -fPIC -DPIC -o .libs/sasaeval.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c search.cpp -o search.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o resonance.lo resonance.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c resonance.cpp -fPIC -DPIC -o .libs/resonance.o +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c moldyn.cpp -o moldyn.o >/dev/null 2>&1 +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o pop_ana.lo pop_ana.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_sf.cpp -o eng1_sf.o >/dev/null 2>&1 +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c pop_ana.cpp -fPIC -DPIC -o .libs/pop_ana.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sasaeval.lo sasaeval.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c sasaeval.cpp -fPIC -DPIC -o .libs/sasaeval.o In file included from pop_ana.h:31, from pop_ana.cpp:22: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': @@ -1839,12 +1874,12 @@ eng1_qm.h:129:142: warning: no return statement in function returning non-void [-Wreturn-type] 129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c moldyn.cpp -o moldyn.o >/dev/null 2>&1 +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o resonance.lo resonance.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c resonance.cpp -fPIC -DPIC -o .libs/resonance.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c pop_ana.cpp -o pop_ana.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c resonance.cpp -o resonance.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c sasaeval.cpp -o sasaeval.o >/dev/null 2>&1 -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_sf.cpp -o eng1_sf.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 5:1:0 -Wl,-z,relro -Wl,--as-needed -o libghemical.la -rpath /usr/lib/i386-linux-gnu atom.lo bond.lo constraint.lo model.lo engine.lo typerule.lo utility.lo chn_info.lo seqbuild.lo mfinder.lo eng1_qm.lo eng1_qm_mpqc.lo eng1_qm_mopac.lo eng1_mm.lo eng1_mm_tripos52.lo tab_mm_tripos52.lo eng1_mm_default.lo tab_mm_default.lo eng1_mm_prmfit.lo tab_mm_prmfit.lo eng1_sf.lo eng1_sf_ua.lo eng1_sf_cg.lo eng2_qm_mm.lo notice.lo conjgrad.lo intcrd.lo search.lo geomopt.lo moldyn.lo pop_ana.lo sasaeval.lo resonance.lo -llapack -lblas -lm -L/usr/lib -lmopac7 -Wl,-z,relro -L/usr/lib/i386-linux-gnu/mpich/lib -lmpichfort -lmpich -lpthread -lhwloc +/bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 5:1:0 -Wl,-z,relro -Wl,--as-needed -o libghemical.la -rpath /usr/lib/i386-linux-gnu atom.lo bond.lo constraint.lo model.lo engine.lo typerule.lo utility.lo chn_info.lo seqbuild.lo mfinder.lo eng1_qm.lo eng1_qm_mpqc.lo eng1_qm_mopac.lo eng1_mm.lo eng1_mm_tripos52.lo tab_mm_tripos52.lo eng1_mm_default.lo tab_mm_default.lo eng1_mm_prmfit.lo tab_mm_prmfit.lo eng1_sf.lo eng1_sf_ua.lo eng1_sf_cg.lo eng2_qm_mm.lo notice.lo conjgrad.lo intcrd.lo search.lo geomopt.lo moldyn.lo pop_ana.lo sasaeval.lo resonance.lo -llapack -lblas -lm -L/usr/lib -lmopac7 -Wl,-z,relro -L/usr/lib/i386-linux-gnu/mpich/lib -lmpichfort -lmpich -lpthread -lhwloc libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/14/crtbeginS.o .libs/atom.o .libs/bond.o .libs/constraint.o .libs/model.o .libs/engine.o .libs/typerule.o .libs/utility.o .libs/chn_info.o .libs/seqbuild.o .libs/mfinder.o .libs/eng1_qm.o .libs/eng1_qm_mpqc.o .libs/eng1_qm_mopac.o .libs/eng1_mm.o .libs/eng1_mm_tripos52.o .libs/tab_mm_tripos52.o .libs/eng1_mm_default.o .libs/tab_mm_default.o .libs/eng1_mm_prmfit.o .libs/tab_mm_prmfit.o .libs/eng1_sf.o .libs/eng1_sf_ua.o .libs/eng1_sf_cg.o .libs/eng2_qm_mm.o .libs/notice.o .libs/conjgrad.o .libs/intcrd.o .libs/search.o .libs/geomopt.o .libs/moldyn.o .libs/pop_ana.o .libs/sasaeval.o .libs/resonance.o -llapack -lblas -L/usr/lib -lmopac7 -L/usr/lib/i386-linux-gnu/mpich/lib -lmpichfort -lmpich -lpthread -lhwloc -L/usr/lib/gcc/i686-linux-gnu/14 -L/usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/14/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/14/crtendS.o /usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,relro -Wl,-soname -Wl,libghemical.so.5 -o .libs/libghemical.so.5.0.1 libtool: link: (cd ".libs" && rm -f "libghemical.so.5" && ln -s "libghemical.so.5.0.1" "libghemical.so.5") libtool: link: (cd ".libs" && rm -f "libghemical.so" && ln -s "libghemical.so.5.0.1" "libghemical.so") @@ -1915,7 +1950,7 @@ make[2]: Leaving directory '/build/reproducible-path/libghemical-3.0.0' make[1]: Leaving directory '/build/reproducible-path/libghemical-3.0.0' dh_auto_test - make -j11 check "TESTSUITEFLAGS=-j11 --verbose" VERBOSE=1 + make -j5 check "TESTSUITEFLAGS=-j5 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libghemical-3.0.0' Making check in src make[2]: Entering directory '/build/reproducible-path/libghemical-3.0.0/src' @@ -1987,7 +2022,7 @@ make[2]: Entering directory '/build/reproducible-path/libghemical-3.0.0/src' make[3]: Entering directory '/build/reproducible-path/libghemical-3.0.0/src' /usr/bin/mkdir -p '/build/reproducible-path/libghemical-3.0.0/debian/tmp/usr/lib/i386-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c libghemical.la '/build/reproducible-path/libghemical-3.0.0/debian/tmp/usr/lib/i386-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c libghemical.la '/build/reproducible-path/libghemical-3.0.0/debian/tmp/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c .libs/libghemical.so.5.0.1 /build/reproducible-path/libghemical-3.0.0/debian/tmp/usr/lib/i386-linux-gnu/libghemical.so.5.0.1 libtool: install: (cd /build/reproducible-path/libghemical-3.0.0/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libghemical.so.5.0.1 libghemical.so.5 || { rm -f libghemical.so.5 && ln -s libghemical.so.5.0.1 libghemical.so.5; }; }) libtool: install: (cd /build/reproducible-path/libghemical-3.0.0/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libghemical.so.5.0.1 libghemical.so || { rm -f libghemical.so && ln -s libghemical.so.5.0.1 libghemical.so; }; }) @@ -2080,7 +2115,7 @@ linguas="de fi mk pt_BR ru sq "; \ for lang in $linguas; do \ dir=/build/reproducible-path/libghemical-3.0.0/debian/tmp/usr/share/locale/$lang/LC_MESSAGES; \ - /bin/bash /build/reproducible-path/libghemical-3.0.0/install-sh -d $dir; \ + /bin/sh /build/reproducible-path/libghemical-3.0.0/install-sh -d $dir; \ if test -r $lang.gmo; then \ /usr/bin/install -c -m 644 $lang.gmo $dir/libghemical.mo; \ echo "installing $lang.gmo as $dir/libghemical.mo"; \ @@ -2128,10 +2163,10 @@ dh_perl dh_link dh_strip_nondeterminism - Normalized debian/libghemical-data/usr/share/locale/pt_BR/LC_MESSAGES/libghemical.mo Normalized debian/libghemical-data/usr/share/locale/sq/LC_MESSAGES/libghemical.mo - Normalized debian/libghemical-data/usr/share/locale/de/LC_MESSAGES/libghemical.mo Normalized debian/libghemical-data/usr/share/locale/fi/LC_MESSAGES/libghemical.mo + Normalized debian/libghemical-data/usr/share/locale/pt_BR/LC_MESSAGES/libghemical.mo + Normalized debian/libghemical-data/usr/share/locale/de/LC_MESSAGES/libghemical.mo Normalized debian/libghemical-data/usr/share/locale/mk/LC_MESSAGES/libghemical.mo Normalized debian/libghemical-data/usr/share/locale/ru/LC_MESSAGES/libghemical.mo dh_compress @@ -2156,25 +2191,25 @@ dh_strip dh_makeshlibs dh_shlibdeps -dpkg-shlibdeps: warning: symbol _ZN2sc20RenderedBallMoleculeC1ERKNS_3RefINS_6KeyValEEE used by debian/libghemical5t64/usr/lib/i386-linux-gnu/libghemical.so.5.0.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol _ZN2sc10QNewtonOptC1ERKNS_3RefINS_6KeyValEEE used by debian/libghemical5t64/usr/lib/i386-linux-gnu/libghemical.so.5.0.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol _ZN2sc8MaterialC1ERKNS_3RefINS_6KeyValEEE used by debian/libghemical5t64/usr/lib/i386-linux-gnu/libghemical.so.5.0.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol _ZN2sc16MolecularFormulaD1Ev used by debian/libghemical5t64/usr/lib/i386-linux-gnu/libghemical.so.5.0.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol _ZN2sc13ShmMessageGrpC1ERKNS_3RefINS_6KeyValEEE used by debian/libghemical5t64/usr/lib/i386-linux-gnu/libghemical.so.5.0.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol _ZN2sc22SCElementScalarProductC1Ev used by debian/libghemical5t64/usr/lib/i386-linux-gnu/libghemical.so.5.0.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol _ZN2sc12Wavefunction8integralEv used by debian/libghemical5t64/usr/lib/i386-linux-gnu/libghemical.so.5.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN2sc5OSSHFC1ERKNS_3RefINS_6KeyValEEE used by debian/libghemical5t64/usr/lib/i386-linux-gnu/libghemical.so.5.0.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol _ZN2sc12Wavefunction7densityERKNS_9SCVector3E used by debian/libghemical5t64/usr/lib/i386-linux-gnu/libghemical.so.5.0.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol _ZN2sc6HSOSHFC1ERKNS_3RefINS_6KeyValEEE used by debian/libghemical5t64/usr/lib/i386-linux-gnu/libghemical.so.5.0.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol _ZN2sc10MessageGrp22get_default_messagegrpEv used by debian/libghemical5t64/usr/lib/i386-linux-gnu/libghemical.so.5.0.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol _ZTVN2sc8RefCountE used by debian/libghemical5t64/usr/lib/i386-linux-gnu/libghemical.so.5.0.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol _ZN2sc19OneBodyWavefunction7orbitalERKNS_9SCVector3Ei used by debian/libghemical5t64/usr/lib/i386-linux-gnu/libghemical.so.5.0.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol _ZN2sc28KeyValValueRefDescribedClassD1Ev used by debian/libghemical5t64/usr/lib/i386-linux-gnu/libghemical.so.5.0.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol _ZN2sc22SCElementScalarProduct6resultEv used by debian/libghemical5t64/usr/lib/i386-linux-gnu/libghemical.so.5.0.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol _ZN2sc9NewtonOptC1ERKNS_3RefINS_6KeyValEEE used by debian/libghemical5t64/usr/lib/i386-linux-gnu/libghemical.so.5.0.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol _ZN2sc14RefSCDimensionC1ERKS0_ used by debian/libghemical5t64/usr/lib/i386-linux-gnu/libghemical.so.5.0.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol _ZN2sc15ReplSCMatrixKitC1ERKNS_3RefINS_6KeyValEEE used by debian/libghemical5t64/usr/lib/i386-linux-gnu/libghemical.so.5.0.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol _ZN2sc9ThreadGrp21set_default_threadgrpERKNS_3RefIS0_EE used by debian/libghemical5t64/usr/lib/i386-linux-gnu/libghemical.so.5.0.1 found in none of the libraries dpkg-shlibdeps: warning: 85 other similar warnings have been skipped (use -v to see them all) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb +dpkg-deb: building package 'libghemical5t64' in '../libghemical5t64_3.0.0-4.4_i386.deb'. dpkg-deb: building package 'libghemical-dev' in '../libghemical-dev_3.0.0-4.4_i386.deb'. dpkg-deb: building package 'libghemical5t64-dbgsym' in '../libghemical5t64-dbgsym_3.0.0-4.4_i386.deb'. dpkg-deb: building package 'libghemical-data' in '../libghemical-data_3.0.0-4.4_all.deb'. -dpkg-deb: building package 'libghemical5t64' in '../libghemical5t64_3.0.0-4.4_i386.deb'. dpkg-genbuildinfo --build=binary -O../libghemical_3.0.0-4.4_i386.buildinfo dpkg-genchanges --build=binary -O../libghemical_3.0.0-4.4_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -2182,12 +2217,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/12032/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/12032/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/59114 and its subdirectories -I: Current time: Fri Dec 13 05:14:43 -12 2024 -I: pbuilder-time-stamp: 1734110083 +I: removing directory /srv/workspace/pbuilder/12032 and its subdirectories +I: Current time: Fri Jan 16 13:39:10 +14 2026 +I: pbuilder-time-stamp: 1768520350