Diff of the two buildlogs: -- --- b1/build.log 2024-12-14 15:45:33.614728854 +0000 +++ b2/build.log 2024-12-14 16:45:09.464603608 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Jan 16 09:57:56 -12 2026 -I: pbuilder-time-stamp: 1768600676 +I: Current time: Sun Dec 15 05:45:42 +14 2024 +I: pbuilder-time-stamp: 1734191142 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -30,54 +30,86 @@ dpkg-source: info: applying do-not-install-potentials.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/93790/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/27771/tmp/hooks/D01_modify_environment starting +debug: Running on ionos12-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 14 15:46 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/27771/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/27771/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=10 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='ff1e555d2fc14b4f90a03584b62d7042' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='93790' - PS1='# ' - PS2='> ' + INVOCATION_ID=dbebd875c74441d09a5877d32372a016 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=27771 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.buWochGY/pbuilderrc_2OgL --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.buWochGY/b1 --logfile b1/build.log lammps_20240207+dfsg-2.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.buWochGY/pbuilderrc_gqCF --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.buWochGY/b2 --logfile b2/build.log lammps_20240207+dfsg-2.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos6-i386 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/93790/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/27771/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -953,7 +985,7 @@ Get: 758 http://deb.debian.org/debian unstable/main i386 texlive-pictures all 2024.20241115-1 [17.0 MB] Get: 759 http://deb.debian.org/debian unstable/main i386 texlive-latex-extra all 2024.20241115-1 [24.6 MB] Get: 760 http://deb.debian.org/debian unstable/main i386 voro++-dev i386 0.5+revert-to-0.4.6+dfsg1-1 [153 kB] -Fetched 747 MB in 14s (54.3 MB/s) +Fetched 747 MB in 46s (16.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libapparmor1:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19952 files and directories currently installed.) @@ -3382,8 +3414,8 @@ Setting up tzdata (2024b-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Fri Jan 16 21:59:34 UTC 2026. -Universal Time is now: Fri Jan 16 21:59:34 UTC 2026. +Local time is now: Sat Dec 14 15:53:39 UTC 2024. +Universal Time is now: Sat Dec 14 15:53:39 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libcap2-bin (1:2.66-5+b1) ... @@ -4281,7 +4313,11 @@ fakeroot is already the newest version (1.36-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/lammps-20240207+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../lammps_20240207+dfsg-2_source.changes +I: user script /srv/workspace/pbuilder/27771/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/27771/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/lammps-20240207+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../lammps_20240207+dfsg-2_source.changes dpkg-buildpackage: info: source package lammps dpkg-buildpackage: info: source version 20240207+dfsg-2 dpkg-buildpackage: info: source distribution unstable @@ -4549,12 +4585,12 @@ -- Using double precision FFTs -- Using threaded FFTs -- Using builtin distributed FFT algorithms --- Configuring done (7.5s) --- Generating done (0.4s) +-- Configuring done (54.2s) +-- Generating done (1.2s) -- Build files have been written to: /build/reproducible-path/lammps-20240207+dfsg/debian/build make[1]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg' dh_auto_build -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build - cd debian/build && make -j22 "INSTALL=install --strip-program=true" VERBOSE=1 + cd debian/build && make -j10 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' /usr/bin/cmake -P /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/VerifyGlobs.cmake /usr/bin/cmake -S/build/reproducible-path/lammps-20240207+dfsg/cmake -B/build/reproducible-path/lammps-20240207+dfsg/debian/build --check-build-system CMakeFiles/Makefile.cmake 0 @@ -4563,651 +4599,658 @@ make[2]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make -f CMakeFiles/fmt_format.h.dir/build.make CMakeFiles/fmt_format.h.dir/depend make -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/depend +make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build 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/build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/citeme.h.dir/DependInfo.cmake "--color=" +make -f CMakeFiles/gitversion.dir/build.make CMakeFiles/gitversion.dir/build make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/atc.dir/DependInfo.cmake "--color=" -make -f CMakeFiles/dihedral.h.dir/build.make CMakeFiles/dihedral.h.dir/depend -make -f CMakeFiles/domain.h.dir/build.make CMakeFiles/domain.h.dir/depend +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make -f CMakeFiles/h5md.dir/build.make CMakeFiles/h5md.dir/build make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/comm.h.dir/DependInfo.cmake "--color=" +/usr/bin/cmake -DLAMMPS_DIR="/build/reproducible-path/lammps-20240207+dfsg" -DGIT_EXECUTABLE="/usr/bin/git" -DGIT_FOUND="TRUE" -DLAMMPS_STYLE_HEADERS_DIR="/build/reproducible-path/lammps-20240207+dfsg/debian/build/styles" -P /build/reproducible-path/lammps-20240207+dfsg/cmake/Modules/generate_lmpgitversion.cmake make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/command.h.dir/DependInfo.cmake "--color=" -make -f CMakeFiles/error.h.dir/build.make CMakeFiles/error.h.dir/depend +make -f CMakeFiles/angle.h.dir/build.make CMakeFiles/angle.h.dir/depend +[ 0%] Generating includes/lammps/fmt/format.h +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/fmt/format.h 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+/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.cpp +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +-- Git Directory: /build/reproducible-path/lammps-20240207+dfsg/.git +-- Generating lmpgitversion.h... +[ 0%] Building CXX object 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-I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingEnergy.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingEnergy.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingEnergy.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingEnergy.cpp +[ 0%] Building C object CMakeFiles/h5md.dir/build/reproducible-path/lammps-20240207+dfsg/lib/h5md/src/ch5md.c.o +/usr/bin/cc -I/build/reproducible-path/lammps-20240207+dfsg/lib/h5md/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. 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"--color=" -make -f CMakeFiles/fix.h.dir/build.make CMakeFiles/fix.h.dir/depend +[ 0%] Built target fmt_format.h +make -f CMakeFiles/atom.h.dir/build.make CMakeFiles/atom.h.dir/depend +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/domain.h.dir/DependInfo.cmake "--color=" -make -f CMakeFiles/force.h.dir/build.make CMakeFiles/force.h.dir/depend +cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/fix.h.dir/DependInfo.cmake "--color=" -make -f CMakeFiles/input.h.dir/build.make CMakeFiles/input.h.dir/depend +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/atom.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/atom.h +[ 0%] Built target angle.h +make -f CMakeFiles/citeme.h.dir/build.make CMakeFiles/citeme.h.dir/depend make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake 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'/build/reproducible-path/lammps-20240207+dfsg/debian/build' -cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/improper.h.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/comm.h.dir/DependInfo.cmake "--color=" +[ 0%] Generating includes/lammps/citeme.h +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/citeme.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/citeme.h +[ 0%] Built target bond.h +make -f CMakeFiles/command.h.dir/build.make CMakeFiles/command.h.dir/depend make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/input.h.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/command.h.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make -f CMakeFiles/comm.h.dir/build.make CMakeFiles/comm.h.dir/build -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make -f CMakeFiles/fmt_format.h.dir/build.make CMakeFiles/fmt_format.h.dir/build -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make -f CMakeFiles/awpmd.dir/build.make CMakeFiles/awpmd.dir/build +make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make -f CMakeFiles/command.h.dir/build.make CMakeFiles/command.h.dir/build make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make -f CMakeFiles/h5md.dir/build.make CMakeFiles/h5md.dir/build -make -f CMakeFiles/gitversion.dir/build.make CMakeFiles/gitversion.dir/build -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/build +[ 0%] Generating includes/lammps/comm.h +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/comm.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/comm.h +[ 0%] Built target citeme.h +make -f CMakeFiles/compute.h.dir/build.make CMakeFiles/compute.h.dir/depend +make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/compute.h.dir/DependInfo.cmake "--color=" +[ 0%] Generating includes/lammps/command.h make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/command.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/command.h make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make -f CMakeFiles/compute.h.dir/build.make CMakeFiles/compute.h.dir/build make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make -f CMakeFiles/angle.h.dir/build.make CMakeFiles/angle.h.dir/build +[ 0%] Built target comm.h +make -f CMakeFiles/dihedral.h.dir/build.make CMakeFiles/dihedral.h.dir/depend +make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/dihedral.h.dir/DependInfo.cmake "--color=" +[ 0%] Generating includes/lammps/compute.h +/usr/bin/cmake -E copy_if_different 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CMakeFiles/atom.h.dir/build.make CMakeFiles/atom.h.dir/build +make -f CMakeFiles/dihedral.h.dir/build.make CMakeFiles/dihedral.h.dir/build make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +[ 0%] Built target compute.h +make -f CMakeFiles/error.h.dir/build.make CMakeFiles/error.h.dir/depend make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make -f CMakeFiles/atc.dir/build.make CMakeFiles/atc.dir/build make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/error.h.dir/DependInfo.cmake "--color=" +make -f CMakeFiles/domain.h.dir/build.make CMakeFiles/domain.h.dir/build make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -/usr/bin/cmake -DLAMMPS_DIR="/build/reproducible-path/lammps-20240207+dfsg" -DGIT_EXECUTABLE="/usr/bin/git" -DGIT_FOUND="TRUE" -DLAMMPS_STYLE_HEADERS_DIR="/build/reproducible-path/lammps-20240207+dfsg/debian/build/styles" -P /build/reproducible-path/lammps-20240207+dfsg/cmake/Modules/generate_lmpgitversion.cmake -make -f CMakeFiles/bond.h.dir/build.make CMakeFiles/bond.h.dir/build -make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make -f CMakeFiles/citeme.h.dir/build.make CMakeFiles/citeme.h.dir/build +[ 0%] Generating includes/lammps/dihedral.h +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/dihedral.h 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directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make -f CMakeFiles/error.h.dir/build.make CMakeFiles/error.h.dir/build make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make -f CMakeFiles/fix.h.dir/build.make CMakeFiles/fix.h.dir/build +[ 0%] Built target error.h make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make -f CMakeFiles/force.h.dir/build.make CMakeFiles/force.h.dir/build -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make -f CMakeFiles/group.h.dir/build.make CMakeFiles/group.h.dir/build -make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make -f CMakeFiles/improper.h.dir/build.make CMakeFiles/improper.h.dir/build -make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make -f CMakeFiles/force.h.dir/build.make CMakeFiles/force.h.dir/depend +[ 1%] Generating includes/lammps/exceptions.h +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/exceptions.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/exceptions.h make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake 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CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.cpp -[ 1%] Generating includes/lammps/improper.h -/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/group.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/group.h +cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build 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target improper.h -make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/memory.h.dir/DependInfo.cmake "--color=" -make -f CMakeFiles/modify.h.dir/build.make CMakeFiles/modify.h.dir/depend -make -f CMakeFiles/neighbor.h.dir/build.make CMakeFiles/neighbor.h.dir/depend -make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake 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'/build/reproducible-path/lammps-20240207+dfsg/debian/build' -/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/info.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/info.h make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make -f CMakeFiles/modify.h.dir/build.make CMakeFiles/modify.h.dir/build make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -[ 3%] Generating includes/lammps/library.h -/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/library.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/library.h -[ 3%] Generating includes/lammps/kspace.h -[ 3%] Generating includes/lammps/lammps.h -/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/kspace.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/kspace.h -[ 3%] Generating includes/lammps/lattice.h -/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/lammps.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/lammps.h -/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/lattice.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/lattice.h -[ 3%] Generating includes/lammps/lmppython.h -/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/lmppython.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/lmppython.h -[ 3%] Generating includes/lammps/lmptype.h -/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/lmptype.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/lmptype.h +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +[ 3%] Built target lmppython.h +make -f CMakeFiles/neighbor.h.dir/build.make CMakeFiles/neighbor.h.dir/depend +make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' [ 3%] Generating includes/lammps/memory.h -[ 3%] Generating includes/lammps/neighbor.h +cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/neighbor.h.dir/DependInfo.cmake "--color=" /usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/memory.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/memory.h -/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/neighbor.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/neighbor.h -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' [ 3%] Generating includes/lammps/modify.h /usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/modify.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/modify.h +[ 3%] Built target lmptype.h +make -f CMakeFiles/neigh_list.h.dir/build.make CMakeFiles/neigh_list.h.dir/depend +make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build 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Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -[ 3%] Built target info.h -[ 3%] Built target lattice.h -[ 3%] Built target kspace.h -make -f CMakeFiles/neigh_list.h.dir/build.make CMakeFiles/neigh_list.h.dir/depend -make -f CMakeFiles/output.h.dir/build.make CMakeFiles/output.h.dir/depend -[ 3%] Built target neighbor.h -[ 3%] Built target lammps.h +make -f CMakeFiles/neigh_list.h.dir/build.make CMakeFiles/neigh_list.h.dir/build +[ 3%] Built target memory.h make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make -f CMakeFiles/pair.h.dir/build.make CMakeFiles/pair.h.dir/depend -cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/neigh_list.h.dir/DependInfo.cmake "--color=" -[ 3%] Built target lmppython.h +make -f CMakeFiles/output.h.dir/build.make CMakeFiles/output.h.dir/depend +[ 3%] Generating includes/lammps/neighbor.h make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/output.h.dir/DependInfo.cmake "--color=" -make -f CMakeFiles/platform.h.dir/build.make CMakeFiles/platform.h.dir/depend +[ 3%] Built target modify.h +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/neighbor.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/neighbor.h +make -f CMakeFiles/pair.h.dir/build.make CMakeFiles/pair.h.dir/depend make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/pair.h.dir/DependInfo.cmake "--color=" -[ 3%] Built target memory.h +[ 4%] Generating includes/lammps/neigh_list.h +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/neigh_list.h 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Built target neighbor.h +make -f CMakeFiles/platform.h.dir/build.make CMakeFiles/platform.h.dir/depend make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/platform.h.dir/DependInfo.cmake "--color=" -[ 3%] Built target lmptype.h +[ 4%] Generating includes/lammps/pair.h +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/pair.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/pair.h +[ 4%] Building CXX object 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Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/pointers.h.dir/DependInfo.cmake "--color=" +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make -f CMakeFiles/platform.h.dir/build.make CMakeFiles/platform.h.dir/build make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake 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+make -f CMakeFiles/pointers.h.dir/build.make CMakeFiles/pointers.h.dir/build +make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/region.h.dir/DependInfo.cmake "--color=" +[ 4%] Generating includes/lammps/platform.h +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/platform.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/platform.h +[ 4%] Built target pair.h +make -f CMakeFiles/timer.h.dir/build.make CMakeFiles/timer.h.dir/depend +make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/timer.h.dir/DependInfo.cmake "--color=" +[ 4%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/colmatrix.cpp.o /usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/colmatrix.cpp.o -MF 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CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.cpp.o -make -f CMakeFiles/neigh_list.h.dir/build.make CMakeFiles/neigh_list.h.dir/build -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make -f CMakeFiles/output.h.dir/build.make CMakeFiles/output.h.dir/build -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.cpp -make -f CMakeFiles/pair.h.dir/build.make CMakeFiles/pair.h.dir/build -make -f CMakeFiles/platform.h.dir/build.make CMakeFiles/platform.h.dir/build +[ 4%] Generating includes/lammps/pointers.h make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make -f CMakeFiles/pointers.h.dir/build.make CMakeFiles/pointers.h.dir/build make -f CMakeFiles/region.h.dir/build.make CMakeFiles/region.h.dir/build +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/pointers.h 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'/build/reproducible-path/lammps-20240207+dfsg/debian/build' -[ 4%] Generating includes/lammps/pointers.h -/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/output.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/output.h -/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/platform.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/platform.h -/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/pair.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/pair.h +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' [ 4%] Generating includes/lammps/region.h -/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/pointers.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/pointers.h -/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/neigh_list.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/neigh_list.h /usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/region.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/region.h +[ 4%] Built target platform.h +make -f CMakeFiles/universe.h.dir/build.make CMakeFiles/universe.h.dir/depend +make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/universe.h.dir/DependInfo.cmake "--color=" [ 4%] Generating 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CMakeFiles/update.h.dir/build make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/universe.h.dir/DependInfo.cmake "--color=" make -f CMakeFiles/utils.h.dir/build.make CMakeFiles/utils.h.dir/depend make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake 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CMakeFiles/variable.h.dir/depend -make -f CMakeFiles/fmt_core.h.dir/build.make CMakeFiles/fmt_core.h.dir/depend +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/universe.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/universe.h make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/variable.h.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/fmt_core.h.dir/DependInfo.cmake "--color=" -[ 4%] Built target timer.h +[ 4%] Generating includes/lammps/update.h +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/update.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/update.h make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make -f CMakeFiles/update.h.dir/build.make CMakeFiles/update.h.dir/build make -f CMakeFiles/utils.h.dir/build.make CMakeFiles/utils.h.dir/build -make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make -f CMakeFiles/universe.h.dir/build.make CMakeFiles/universe.h.dir/build -make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -[ 4%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Transfer.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Transfer.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Transfer.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Transfer.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Transfer.cpp make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make -f CMakeFiles/fmt_core.h.dir/build.make CMakeFiles/fmt_core.h.dir/build +make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make -f CMakeFiles/variable.h.dir/build.make CMakeFiles/variable.h.dir/build make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -[ 4%] Generating includes/lammps/utils.h +[ 4%] Built target universe.h +make -f CMakeFiles/fmt_core.h.dir/build.make 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-DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferKernel.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferKernel.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferKernel.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferKernel.cpp -[ 4%] Generating includes/lammps/update.h -/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/update.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/update.h -[ 4%] Generating includes/lammps/universe.h -/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/universe.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/universe.h -[ 4%] Generating includes/lammps/fmt/core.h [ 5%] Generating includes/lammps/variable.h -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/fmt/core.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/fmt/core.h /usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/variable.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/variable.h +[ 5%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/eulerparameters.cpp.o +/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/eulerparameters.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/eulerparameters.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/eulerparameters.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/eulerparameters.cpp make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -[ 5%] Built target utils.h -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make -f CMakeFiles/fmt_core.h.dir/build.make CMakeFiles/fmt_core.h.dir/build +make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -[ 5%] Built target update.h -[ 5%] Built target universe.h +[ 5%] Built target utils.h +[ 5%] Generating includes/lammps/fmt/core.h +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/fmt/core.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/fmt/core.h [ 5%] Built target variable.h -[ 5%] Built target fmt_core.h [ 5%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/fastmatrixops.cpp.o -[ 5%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferPartitionOfUnity.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferPartitionOfUnity.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferPartitionOfUnity.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferPartitionOfUnity.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferPartitionOfUnity.cpp /usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/fastmatrixops.cpp.o 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferPartitionOfUnity.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferPartitionOfUnity.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferPartitionOfUnity.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferPartitionOfUnity.cpp +[ 8%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomToMoleculeTransfer.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomToMoleculeTransfer.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomToMoleculeTransfer.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomToMoleculeTransfer.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomToMoleculeTransfer.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.h:5, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.h:10, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingEnergy.h:5, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingEnergy.cpp:2: + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentumEnergy.h:5, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentumEnergy.cpp:2: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ -[ 9%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronChargeDensity.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat 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CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronFlux.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronFlux.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronFlux.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronFlux.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.h:5, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.h:10, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentumEnergy.h:5, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentumEnergy.cpp:2: + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentum.h:7, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentum.cpp:2: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ -[ 9%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronHeatCapacity.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronHeatCapacity.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronHeatCapacity.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronHeatCapacity.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronHeatCapacity.cpp -[ 9%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronHeatFlux.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronHeatFlux.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronHeatFlux.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronHeatFlux.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronHeatFlux.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomicRegulator.h:6, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomicRegulator.cpp:2: + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.h:5, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Transfer.h:6, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Transfer.cpp:2: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ +[ 9%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/BodyForce.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/BodyForce.cpp.o -MF 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-D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ConcentrationRegulator.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ConcentrationRegulator.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ConcentrationRegulator.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ConcentrationRegulator.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CauchyBorn.h:4, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CauchyBorn.cpp:1: 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/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CauchyBorn.cpp:1: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ +[ 9%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElasticTimeIntegrator.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT 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-ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp -[ 10%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldEulerIntegrator.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat 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CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Function.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Function.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Function.cpp -[ 10%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FundamentalAtomicQuantity.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FundamentalAtomicQuantity.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FundamentalAtomicQuantity.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FundamentalAtomicQuantity.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FundamentalAtomicQuantity.cpp -[ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/GhostManager.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/GhostManager.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/GhostManager.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/GhostManager.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/GhostManager.cpp -[ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ImplicitSolveOperator.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ImplicitSolveOperator.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ImplicitSolveOperator.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ImplicitSolveOperator.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ImplicitSolveOperator.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.h:6, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Element.cpp:3: @@ -5252,10 +5281,15 @@ /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ -[ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/InterscaleOperators.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/InterscaleOperators.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/InterscaleOperators.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/InterscaleOperators.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/InterscaleOperators.cpp -[ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KD_Tree.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KD_Tree.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KD_Tree.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KD_Tree.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/KD_Tree.cpp +In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModel.h:8, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelTwoTemperature.h:6, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelTwoTemperature.cpp:2: +/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': +/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] + 117 | return (*_baseV)(i); + | ~~~~~~~~~^~~ In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModel.h:8, @@ -5266,19 +5300,33 @@ /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ -[ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KernelFunction.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KernelFunction.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KernelFunction.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KernelFunction.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/KernelFunction.cpp -[ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KinetoThermostat.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KinetoThermostat.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KinetoThermostat.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KinetoThermostat.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/KinetoThermostat.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModel.h:8, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelTwoTemperature.h:6, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelTwoTemperature.cpp:2: + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelElectrostatic.h:7, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelElectrostatic.cpp:2: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ +[ 10%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp +[ 10%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldEulerIntegrator.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldEulerIntegrator.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldEulerIntegrator.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldEulerIntegrator.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldEulerIntegrator.cpp +In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Engine.h:9, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Engine.cpp:1: +/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': +/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] + 117 | return (*_baseV)(i); + | ~~~~~~~~~^~~ +[ 10%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldManager.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldManager.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldManager.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldManager.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldManager.cpp +[ 10%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Function.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Function.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Function.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Function.cpp.o -c 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/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FundamentalAtomicQuantity.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Element.h:8, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp:2: @@ -5293,74 +5341,69 @@ /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ -[ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Kinetostat.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security 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CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/GhostManager.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/GhostManager.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/GhostManager.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/GhostManager.cpp +[ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ImplicitSolveOperator.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ImplicitSolveOperator.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ImplicitSolveOperator.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ImplicitSolveOperator.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ImplicitSolveOperator.cpp +[ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/InterscaleOperators.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/InterscaleOperators.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/InterscaleOperators.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/InterscaleOperators.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/InterscaleOperators.cpp +[ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KD_Tree.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KD_Tree.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KD_Tree.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KD_Tree.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/KD_Tree.cpp +[ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KernelFunction.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KernelFunction.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KernelFunction.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KernelFunction.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/KernelFunction.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModel.h:8, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelElectrostatic.h:7, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelElectrostatic.cpp:2: + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ImplicitSolveOperator.h:6, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ImplicitSolveOperator.cpp:2: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ +[ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KinetoThermostat.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KinetoThermostat.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KinetoThermostat.cpp.o.d -o 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CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/LinearSolver.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/LinearSolver.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/LinearSolver.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/LinearSolver.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/LinearSolver.cpp [ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MPI_Wrappers.cpp.o 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-I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Material.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Material.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Material.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Material.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Engine.h:9, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Engine.cpp:1: -/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': -/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] - 117 | return (*_baseV)(i); - | ~~~~~~~~~^~~ -In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ImplicitSolveOperator.h:6, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ImplicitSolveOperator.cpp:2: + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/LammpsInterface.h:25, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/LammpsInterface.cpp:2: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ -[ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Material.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Material.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Material.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Material.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Material.cpp [ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Matrix.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Matrix.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Matrix.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Matrix.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Matrix.cpp [ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MeshReader.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MeshReader.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MeshReader.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MeshReader.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MeshReader.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/LammpsInterface.h:25, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/LammpsInterface.cpp:2: + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomicRegulator.h:6, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/KinetoThermostat.h:4, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/KinetoThermostat.cpp:1: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ -[ 11%] Linking CXX static library liblammps_awpmd.a -/usr/bin/cmake -P CMakeFiles/awpmd.dir/cmake_clean_target.cmake -/usr/bin/cmake -E cmake_link_script 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MoleculeSet.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MoleculeSet.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MoleculeSet.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MoleculeSet.cpp [ 12%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/NonLinearSolver.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 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/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ -[ 12%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/OutputManager.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/OutputManager.cpp.o -MF 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CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PaqAtcUtility.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PaqAtcUtility.cpp [ 12%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ParDiagonalMatrix.cpp.o @@ -5375,13 +5418,6 @@ /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PhysicsModel.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PhysicsModel.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PhysicsModel.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PhysicsModel.cpp [ 12%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PoissonSolver.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PoissonSolver.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PoissonSolver.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PoissonSolver.cpp.o -c 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Stress.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Stress.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Stress.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Stress.cpp -[ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ThermalTimeIntegrator.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT 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CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferLibrary.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferLibrary.cpp -[ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferOperator.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferOperator.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferOperator.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferOperator.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferOperator.cpp -[ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Vector.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Vector.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Vector.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Vector.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Vector.cpp -[ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ViscousStress.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ViscousStress.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ViscousStress.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ViscousStress.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ViscousStress.cpp -[ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationChargeDiffusion.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationChargeDiffusion.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationChargeDiffusion.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationChargeDiffusion.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationChargeDiffusion.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PhysicsModel.h:8, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PhysicsModel.cpp:1: @@ -5419,10 +5437,17 @@ /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ -[ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationDiffusion.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationDiffusion.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationDiffusion.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationDiffusion.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationDiffusion.cpp -[ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronContinuity.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronContinuity.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronContinuity.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronContinuity.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronContinuity.cpp +[ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ThermalTimeIntegrator.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ThermalTimeIntegrator.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ThermalTimeIntegrator.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ThermalTimeIntegrator.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ThermalTimeIntegrator.cpp +In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/LinearSolver.h:5, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PoissonSolver.h:6, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PoissonSolver.cpp:1: +/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': +/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] + 117 | return (*_baseV)(i); + | ~~~~~~~~~^~~ In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/LammpsInterface.h:25, @@ -5440,19 +5465,37 @@ /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ +[ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Thermostat.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Thermostat.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Thermostat.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Thermostat.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Thermostat.cpp +[ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeFilter.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat 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CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeIntegrator.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeIntegrator.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeIntegrator.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeIntegrator.cpp +[ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferLibrary.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferLibrary.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferLibrary.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferLibrary.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferLibrary.cpp +[ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferOperator.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferOperator.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferOperator.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferOperator.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferOperator.cpp +[ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Vector.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Vector.cpp.o -MF 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ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ +[ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ViscousStress.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ViscousStress.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ViscousStress.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ViscousStress.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ViscousStress.cpp +[ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationChargeDiffusion.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationChargeDiffusion.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationChargeDiffusion.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationChargeDiffusion.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationChargeDiffusion.cpp +[ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationDiffusion.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationDiffusion.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationDiffusion.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationDiffusion.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationDiffusion.cpp +[ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronContinuity.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronContinuity.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronContinuity.cpp.o.d -o 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-ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPhononTemperature.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPhononTemperature.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPhononTemperature.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPhononTemperature.cpp -[ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPoisson.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPoisson.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPoisson.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPoisson.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPoisson.cpp -In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquation.h:7, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronMomentum.h:7, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronMomentum.cpp:1: -/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': -/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] - 117 | return (*_baseV)(i); - | ~~~~~~~~~^~~ -In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomicRegulator.h:6, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Thermostat.h:4, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Thermostat.cpp:1: -/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': -/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] - 117 | return (*_baseV)(i); - | ~~~~~~~~~^~~ -[ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationSchrodinger.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationSchrodinger.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationSchrodinger.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationSchrodinger.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationSchrodinger.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/LammpsInterface.h:25, @@ -5511,6 +5526,27 @@ /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ +[ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronTemperature.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronTemperature.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronTemperature.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronTemperature.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronTemperature.cpp +[ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMassDiffusion.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMassDiffusion.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMassDiffusion.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMassDiffusion.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMassDiffusion.cpp +In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquation.h:7, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronMomentum.h:7, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronMomentum.cpp:1: +/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': +/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] + 117 | return (*_baseV)(i); + | ~~~~~~~~~^~~ +[ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMomentum.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT 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Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/dump_movie.cpp.o /usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLAMMPS_ZSTD -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_OPENMP -DLMP_PYTHON -DMPICH_SKIP_MPICXX -DNC_64BIT_DATA=0x0020 -DOMPI_SKIP_MPICXX -D_MPICC_H -Dkiss_fft_scalar=double -Dlammps_EXPORTS -I/build/reproducible-path/lammps-20240207+dfsg/src -I/build/reproducible-path/lammps-20240207+dfsg/src/ASPHERE -I/build/reproducible-path/lammps-20240207+dfsg/src/ATC -I/build/reproducible-path/lammps-20240207+dfsg/src/AWPMD -I/build/reproducible-path/lammps-20240207+dfsg/src/BOCS -I/build/reproducible-path/lammps-20240207+dfsg/src/BODY -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-DNA -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-SPICA -I/build/reproducible-path/lammps-20240207+dfsg/src/CLASS2 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-I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/include -I/build/reproducible-path/lammps-20240207+dfsg/lib/h5md/include -I/usr/include/hdf5/serial -isystem /usr/lib/i386-linux-gnu/mpich/include -isystem /usr/include/python3.12 -isystem /usr/include/voro++ -isystem /usr/include/vtk-9.3 -isystem /usr/lib/i386-linux-gnu/kim-api/mod -isystem /usr/include/kim-api -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -fopenmp -MD -MT CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/dump_movie.cpp.o -MF CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/dump_movie.cpp.o.d -o CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/dump_movie.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/src/dump_movie.cpp -/build/reproducible-path/lammps-20240207+dfsg/src/dihedral_write.cpp: In member function 'virtual void LAMMPS_NS::DihedralWrite::command(int, char**)': -/build/reproducible-path/lammps-20240207+dfsg/src/dihedral_write.cpp:154:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 154 | fgets(line, MAXLINE, coeffs); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ [ 23%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/dump_xyz.cpp.o /usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLAMMPS_ZSTD -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_OPENMP -DLMP_PYTHON -DMPICH_SKIP_MPICXX -DNC_64BIT_DATA=0x0020 -DOMPI_SKIP_MPICXX -D_MPICC_H -Dkiss_fft_scalar=double -Dlammps_EXPORTS -I/build/reproducible-path/lammps-20240207+dfsg/src 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[-Wunused-result] 188 | fgets(line,sizeof(line),in); @@ -7010,15 +7036,25 @@ /build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_readpot.cpp:110:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 110 | fgets(line,sizeof(line),in); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ +[ 70%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MGPT/pair_mgpt.cpp.o /build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_readpot.cpp:120:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 120 | fgets(line,sizeof(line),in); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_readpot.cpp:124:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 124 | fgets(line,sizeof(line),in); | 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/build/reproducible-path/lammps-20240207+dfsg/src/OPT/pair_eam_fs_opt.cpp @@ -8027,7 +8063,7 @@ -e 's,@LAMMPS_SOURCE_DIR@,/build/reproducible-path/lammps-20240207+dfsg/doc/../src,g' \ -e 's,@LAMMPS_PYTHON_DIR@,/build/reproducible-path/lammps-20240207+dfsg/doc/../python,g' \ -e 's,@LAMMPS_DOC_DIR@,/build/reproducible-path/lammps-20240207+dfsg/doc,g' /build/reproducible-path/lammps-20240207+dfsg/doc/utils/sphinx-config/conf.py.in > /build/reproducible-path/lammps-20240207+dfsg/doc/utils/sphinx-config/conf.py -WARNING: The directory '/nonexistent/first-build/.cache/pip' or its parent directory is not owned or is not writable by the current user. The cache has been disabled. Check the permissions and owner of that directory. If executing pip with sudo, you should use sudo's -H flag. +WARNING: The directory '/nonexistent/second-build/.cache/pip' or its parent directory is not owned or is not writable by the current user. The cache has been disabled. Check the permissions and owner of that directory. If executing pip with sudo, you should use sudo's -H flag. Obtaining file:///build/reproducible-path/lammps-20240207%2Bdfsg/doc/utils/converters Installing build dependencies: started Installing build dependencies: finished with status 'error' @@ -8036,12 +8072,12 @@ × pip subprocess to install build dependencies did not run successfully. │ exit code: 1 ╰─> [8 lines of output] - WARNING: The directory '/nonexistent/first-build/.cache/pip' or its parent directory is not owned or is not writable by the current user. The cache has been disabled. Check the permissions and owner of that directory. If executing pip with sudo, you should use sudo's -H flag. - WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/ - WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/ - WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/ - WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/ - WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/ + WARNING: The directory '/nonexistent/second-build/.cache/pip' or its parent directory is not owned or is not writable by the current user. The cache has been disabled. Check the permissions and owner of that directory. If executing pip with sudo, you should use sudo's -H flag. + WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/ + WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/ + WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/ + WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/ + WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/ ERROR: Could not find a version that satisfies the requirement setuptools>=40.8.0 (from versions: none) ERROR: No matching distribution found for setuptools>=40.8.0 [end of output] @@ -8066,56 +8102,43 @@ writing output... building [html]: targets for 987 source files that are out of date updating environment: [new config] 987 added, 0 changed, 0 removed -reading sources... 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[100%] units .. write_restart +reading sources... [ 3%] Bibliography .. Commands_pair +reading sources... [ 5%] Commands_parse .. Errors +reading sources... [ 8%] Errors_bugs .. Howto_granular +reading sources... [ 11%] Howto_grid .. Howto_viscosity +reading sources... [ 14%] Howto_viz .. Library_objects +reading sources... [ 16%] Library_properties .. Packages_list +reading sources... [ 19%] Python_atoms .. Speed_bench +reading sources... [ 22%] Speed_compare .. angle_gaussian +reading sources... [ 24%] angle_harmonic .. atc_electron_integration +reading sources... [ 27%] atc_equilibrium_start .. atc_mesh_create_nodeset +reading sources... [ 30%] atc_mesh_delete_elements .. atc_track_displacement +reading sources... [ 32%] atc_unfix .. bond_oxdna +reading sources... [ 35%] bond_quartic .. compute_chunk_atom +reading sources... [ 38%] compute_chunk_spread_atom .. compute_erotate_sphere_atom +reading sources... [ 41%] compute_event_displace .. compute_msd_nongauss +reading sources... [ 43%] compute_nbond_atom .. compute_smd_contact_radius +reading sources... [ 46%] compute_smd_damage .. compute_stress_cartesian +reading sources... [ 49%] compute_stress_curvilinear .. compute_viscosity_cos +reading sources... [ 51%] compute_voronoi_atom .. dihedral_write +reading sources... [ 54%] dihedral_zero .. fix_amoeba_pitorsion +reading sources... [ 57%] fix_append_atoms .. fix_deform +reading sources... [ 59%] fix_deposit .. fix_halt +reading sources... [ 62%] fix_heat .. fix_neb +reading sources... [ 65%] fix_neb_spin .. fix_nve_manifold_rattle +reading sources... [ 68%] fix_nve_noforce .. fix_print +reading sources... [ 70%] fix_propel_self .. fix_smd_integrate_ulsph +reading sources... [ 73%] fix_smd_move_triangulated_surface .. fix_viscous_sphere +reading sources... [ 76%] fix_wall .. improper_hybrid +reading sources... [ 78%] improper_inversion_harmonic .. neb +reading sources... [ 81%] neb_spin .. pair_class2 +reading sources... [ 84%] pair_coeff .. pair_gayberne +reading sources... [ 86%] pair_gran .. pair_lj_long +reading sources... [ 89%] pair_lj_relres .. pair_oxrna2 +reading sources... [ 92%] pair_pace .. pair_spin_dipole +reading sources... [ 95%] pair_spin_dmi .. pairs +reading sources... [ 97%] partition .. thermo +reading sources... [100%] thermo_modify .. write_restart WARNING: unknown directive or role name: f:mod /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1: ERROR: Unknown interpreted text role "f:mod". [docutils] @@ -10985,9 +11008,9 @@ checking consistency... /build/reproducible-path/lammps-20240207+dfsg/doc/src/angle_coeff.rst: document is referenced in multiple toctrees: ['angles', 'commands_list'], selecting: commands_list <- angle_coeff /build/reproducible-path/lammps-20240207+dfsg/doc/src/angle_style.rst: document is referenced in multiple toctrees: ['angles', 'commands_list'], selecting: commands_list <- angle_style /build/reproducible-path/lammps-20240207+dfsg/doc/src/angle_write.rst: document is referenced in multiple toctrees: ['angles', 'commands_list'], selecting: commands_list <- angle_write -/build/reproducible-path/lammps-20240207+dfsg/doc/src/bond_coeff.rst: document is referenced in multiple toctrees: ['commands_list', 'bonds'], selecting: commands_list <- bond_coeff -/build/reproducible-path/lammps-20240207+dfsg/doc/src/bond_style.rst: document is referenced in multiple toctrees: ['commands_list', 'bonds'], selecting: commands_list <- bond_style -/build/reproducible-path/lammps-20240207+dfsg/doc/src/bond_write.rst: document is referenced in multiple toctrees: ['commands_list', 'bonds'], selecting: commands_list <- bond_write +/build/reproducible-path/lammps-20240207+dfsg/doc/src/bond_coeff.rst: document is referenced in multiple toctrees: ['bonds', 'commands_list'], selecting: commands_list <- bond_coeff +/build/reproducible-path/lammps-20240207+dfsg/doc/src/bond_style.rst: document is referenced in multiple toctrees: ['bonds', 'commands_list'], selecting: commands_list <- bond_style +/build/reproducible-path/lammps-20240207+dfsg/doc/src/bond_write.rst: document is referenced in multiple toctrees: ['bonds', 'commands_list'], selecting: commands_list <- bond_write /build/reproducible-path/lammps-20240207+dfsg/doc/src/compute_modify.rst: document is referenced in multiple toctrees: ['commands_list', 'computes'], selecting: computes <- compute_modify /build/reproducible-path/lammps-20240207+dfsg/doc/src/dihedral_coeff.rst: document is referenced in multiple toctrees: ['commands_list', 'dihedrals'], selecting: dihedrals <- dihedral_coeff /build/reproducible-path/lammps-20240207+dfsg/doc/src/dihedral_style.rst: document is referenced in multiple toctrees: ['commands_list', 'dihedrals'], selecting: dihedrals <- dihedral_style @@ -11013,62 +11036,48 @@ preparing documents... done copying assets... copying static files... -Writing evaluated template result to /build/reproducible-path/lammps-20240207+dfsg/doc/html/_static/basic.css -Writing evaluated template result to /build/reproducible-path/lammps-20240207+dfsg/doc/html/_static/documentation_options.js Writing evaluated template result to /build/reproducible-path/lammps-20240207+dfsg/doc/html/_static/language_data.js +Writing evaluated template result to /build/reproducible-path/lammps-20240207+dfsg/doc/html/_static/documentation_options.js +Writing evaluated template result to /build/reproducible-path/lammps-20240207+dfsg/doc/html/_static/basic.css copying static files: done copying extra files... copying extra files: done copying assets: done -writing output... [ 2%] Build .. Commands_category -writing output... [ 4%] Commands_compute .. Developer_par_long -writing output... [ 6%] Developer_par_neigh .. Examples -writing output... [ 8%] Fortran .. Howto_granular -writing output... [ 10%] Howto_grid .. Howto_temperature -writing output... [ 12%] Howto_thermostat .. Intro_citing -writing output... [ 14%] Intro_features .. Modify -writing output... [ 16%] Modify_atom .. Packages_details -writing output... [ 18%] Packages_list .. Python_scatter -writing output... [ 20%] Python_trouble .. angle_amoeba -writing output... [ 22%] angle_charmm .. angle_mm3 -writing output... [ 24%] angle_none .. atc_control_thermal -writing output... [ 26%] atc_decomposition .. atc_lumped_lambda_solve -writing output... [ 28%] atc_mask_direction .. atc_output_volume_integral -writing output... [ 30%] atc_pair_interactions .. atc_write_restart -writing output... [ 32%] atom_modify .. bond_morse -writing output... [ 34%] bond_none .. compute_angle -writing output... [ 36%] compute_angle_local .. compute_count_type -writing output... [ 38%] compute_damage_atom .. compute_fep -writing output... [ 40%] compute_fep_ta .. compute_modify -writing output... [ 42%] compute_momentum .. compute_property_local -writing output... [ 44%] compute_ptm_atom .. compute_smd_tlsph_num_neighs -writing output... [ 46%] compute_smd_tlsph_shape .. compute_stress_mop -writing output... [ 48%] compute_tally .. compute_temp_uef -writing output... [ 50%] compute_ti .. dihedral_harmonic -writing output... [ 52%] dihedral_helix .. dump_h5md -writing output... [ 54%] dump_image .. fix_append_atoms -writing output... [ 56%] fix_atc .. fix_brownian -writing output... [ 58%] fix_charge_regulation .. fix_eos_table -writing output... [ 60%] fix_eos_table_rx .. fix_ipi -writing output... [ 62%] fix_langevin .. fix_neb -writing output... [ 64%] fix_neb_spin .. fix_nve_body -writing output... [ 66%] fix_nve_bpm_sphere .. fix_orient -writing output... [ 68%] fix_orient_eco .. fix_qeq -writing output... [ 70%] fix_qeq_comb .. fix_smd_integrate_tlsph -writing output... [ 72%] fix_smd_integrate_ulsph .. fix_thermal_conductivity -writing output... [ 74%] fix_ti_spring .. fix_widom -writing output... [ 76%] fixes .. improper_style -writing output... [ 78%] improper_umbrella .. minimize -writing output... [ 80%] molecule .. pair_bop -writing output... [ 82%] pair_born .. pair_dielectric -writing output... [ 84%] pair_dipole .. pair_gw -writing output... [ 86%] pair_harmonic_cut .. pair_lj_cut_tip4p -writing output... [ 88%] pair_lj_expand .. pair_modify -writing output... [ 90%] pair_momb .. pair_saip_metal -writing output... [ 92%] pair_sdpd_taitwater_isothermal .. pair_spin_magelec -writing output... [ 94%] pair_spin_neel .. pair_yukawa -writing output... [ 96%] pair_yukawa_colloid .. restart -writing output... [ 98%] run .. units +writing output... [ 3%] Build .. Commands_removed +writing output... [ 6%] Commands_structure .. Errors_debug +writing output... [ 8%] Errors_details .. Howto_library +writing output... [ 11%] Howto_manifold .. Install_conda +writing output... [ 14%] Install_git .. Modify +writing output... [ 17%] Modify_atom .. Python_execute +writing output... [ 19%] Python_ext .. Speed_packages +writing output... [ 22%] Speed_tips .. angle_style +writing output... [ 25%] angle_table .. atc_hardy_gradients +writing output... [ 28%] atc_hardy_kernel .. atc_output_volume_integral +writing output... [ 31%] atc_pair_interactions .. bond_fene +writing output... [ 33%] bond_fene_expand .. commands_list +writing output... [ 36%] compute .. compute_dilatation_atom +writing output... [ 39%] compute_dipole .. compute_improper_local +writing output... [ 42%] compute_inertia_chunk .. compute_property_local +writing output... [ 44%] compute_ptm_atom .. compute_smd_ulsph_strain +writing output... [ 47%] compute_smd_ulsph_strain_rate .. compute_temp_region +writing output... [ 50%] compute_temp_region_eff .. dihedral_multi_harmonic +writing output... [ 53%] dihedral_nharmonic .. fix_acks2_reaxff +writing output... [ 56%] fix_adapt .. fix_brownian +writing output... [ 58%] fix_charge_regulation .. fix_gcmc +writing output... [ 61%] fix_gld .. fix_momentum +writing output... [ 64%] fix_move .. fix_nve_eff +writing output... [ 67%] fix_nve_limit .. fix_press_berendsen +writing output... [ 69%] fix_press_langevin .. fix_smd_integrate_tlsph +writing output... [ 72%] fix_smd_integrate_ulsph .. fix_viscous_sphere +writing output... [ 75%] fix_wall .. improper_inversion_harmonic +writing output... [ 78%] improper_none .. neigh_modify +writing output... [ 81%] neighbor .. pair_comb +writing output... [ 83%] pair_cosine_squared .. pair_gw +writing output... [ 86%] pair_harmonic_cut .. pair_local_density +writing output... [ 89%] pair_lubricate .. pair_quip +writing output... [ 92%] pair_rann .. pair_sw +writing output... [ 94%] pair_sw_angle_table .. read_data +writing output... [ 97%] read_dump .. units writing output... [100%] variable .. write_restart generating indices... genindex py-modindex done @@ -14092,9 +14101,9 @@ checking consistency... /build/reproducible-path/lammps-20240207+dfsg/doc/src/angle_coeff.rst: document is referenced in multiple toctrees: ['angles', 'commands_list'], selecting: commands_list <- angle_coeff /build/reproducible-path/lammps-20240207+dfsg/doc/src/angle_style.rst: document is referenced in multiple toctrees: ['angles', 'commands_list'], selecting: commands_list <- angle_style /build/reproducible-path/lammps-20240207+dfsg/doc/src/angle_write.rst: document is referenced in multiple toctrees: ['angles', 'commands_list'], selecting: commands_list <- angle_write -/build/reproducible-path/lammps-20240207+dfsg/doc/src/bond_coeff.rst: document is referenced in multiple toctrees: ['commands_list', 'bonds'], selecting: commands_list <- bond_coeff -/build/reproducible-path/lammps-20240207+dfsg/doc/src/bond_style.rst: document is referenced in multiple toctrees: ['commands_list', 'bonds'], selecting: commands_list <- bond_style -/build/reproducible-path/lammps-20240207+dfsg/doc/src/bond_write.rst: document is referenced in multiple toctrees: ['commands_list', 'bonds'], selecting: commands_list <- bond_write +/build/reproducible-path/lammps-20240207+dfsg/doc/src/bond_coeff.rst: document is referenced in multiple toctrees: ['bonds', 'commands_list'], selecting: commands_list <- bond_coeff +/build/reproducible-path/lammps-20240207+dfsg/doc/src/bond_style.rst: document is referenced in multiple toctrees: ['bonds', 'commands_list'], selecting: commands_list <- bond_style +/build/reproducible-path/lammps-20240207+dfsg/doc/src/bond_write.rst: document is referenced in multiple toctrees: ['bonds', 'commands_list'], selecting: commands_list <- bond_write /build/reproducible-path/lammps-20240207+dfsg/doc/src/compute_modify.rst: document is referenced in multiple toctrees: ['commands_list', 'computes'], selecting: computes <- compute_modify /build/reproducible-path/lammps-20240207+dfsg/doc/src/dihedral_coeff.rst: document is referenced in multiple toctrees: ['commands_list', 'dihedrals'], selecting: dihedrals <- dihedral_coeff /build/reproducible-path/lammps-20240207+dfsg/doc/src/dihedral_style.rst: document is referenced in multiple toctrees: ['commands_list', 'dihedrals'], selecting: dihedrals <- dihedral_style @@ -14120,9 +14129,9 @@ preparing documents... done copying assets... copying static files... -Writing evaluated template result to /build/reproducible-path/lammps-20240207+dfsg/doc/html/_static/basic.css -Writing evaluated template result to /build/reproducible-path/lammps-20240207+dfsg/doc/html/_static/documentation_options.js Writing evaluated template result to /build/reproducible-path/lammps-20240207+dfsg/doc/html/_static/language_data.js +Writing evaluated template result to /build/reproducible-path/lammps-20240207+dfsg/doc/html/_static/documentation_options.js +Writing evaluated template result to /build/reproducible-path/lammps-20240207+dfsg/doc/html/_static/basic.css copying static files: done copying extra files... copying extra files: done @@ -14168,7 +14177,7 @@ 1 by 1 by 1 MPI processor grid Created 8141 atoms using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) - create_atoms CPU = 0.003 seconds + create_atoms CPU = 0.020 seconds 302 atoms in group lower 302 atoms in group upper 604 atoms in group boundary @@ -14229,20 +14238,20 @@ 4600 0.086766447 -3.0437627 0 -2.9634443 -1.0208785 9361.9925 4800 0.088195149 -3.0328502 0 -2.9512093 -1.0272063 9395.6122 5000 0.089415266 -3.0228825 0 -2.9401122 -1.0215336 9436.1637 -Loop time of 11.1273 on 1 procs for 5000 steps with 8141 atoms +Loop time of 37.7381 on 1 procs for 5000 steps with 8141 atoms -Performance: 116470.681 tau/day, 449.347 timesteps/s, 3.658 Matom-step/s -100.0% CPU use with 1 MPI tasks x 1 OpenMP threads +Performance: 34341.945 tau/day, 132.492 timesteps/s, 1.079 Matom-step/s +79.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- -Pair | 9.9198 | 9.9198 | 9.9198 | 0.0 | 89.15 -Neigh | 0.35392 | 0.35392 | 0.35392 | 0.0 | 3.18 -Comm | 0.0057124 | 0.0057124 | 0.0057124 | 0.0 | 0.05 -Output | 0.0012168 | 0.0012168 | 0.0012168 | 0.0 | 0.01 -Modify | 0.62774 | 0.62774 | 0.62774 | 0.0 | 5.64 -Other | | 0.2189 | | | 1.97 +Pair | 33.514 | 33.514 | 33.514 | 0.0 | 88.81 +Neigh | 1.143 | 1.143 | 1.143 | 0.0 | 3.03 +Comm | 0.037335 | 0.037335 | 0.037335 | 0.0 | 0.10 +Output | 0.024743 | 0.024743 | 0.024743 | 0.0 | 0.07 +Modify | 2.2265 | 2.2265 | 2.2265 | 0.0 | 5.90 +Other | | 0.7928 | | | 2.10 Nlocal: 8141 ave 8141 max 8141 min Histogram: 1 0 0 0 0 0 0 0 0 0 @@ -14255,7 +14264,7 @@ Ave neighs/atom = 8.7690701 Neighbor list builds = 100 Dangerous builds = 0 -Total wall time: 0:00:11 +Total wall time: 0:00:37 rm -rf test make[1]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg' dh_auto_test -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build -Nlammps -Nliblammps-dev -Nliblammps0t64 -Npython3-lammps @@ -14265,7 +14274,7 @@ dh_testroot -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build dh_prep -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build dh_auto_install -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build -Nlammps-doc -Nlammps-data -Nlammps-examples - cd debian/build && make -j22 install DESTDIR=/build/reproducible-path/lammps-20240207\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd debian/build && make -j10 install DESTDIR=/build/reproducible-path/lammps-20240207\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' /usr/bin/cmake -P /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/VerifyGlobs.cmake /usr/bin/cmake -S/build/reproducible-path/lammps-20240207+dfsg/cmake -B/build/reproducible-path/lammps-20240207+dfsg/debian/build --check-build-system CMakeFiles/Makefile.cmake 0 @@ -14346,36 +14355,36 @@ running build_py creating build/lib/lammps copying lammps/numpy_wrapper.py -> build/lib/lammps -copying lammps/core.py -> build/lib/lammps copying lammps/data.py -> build/lib/lammps +copying lammps/core.py -> build/lib/lammps +copying lammps/__init__.py -> build/lib/lammps copying lammps/formats.py -> build/lib/lammps copying lammps/constants.py -> build/lib/lammps copying lammps/pylammps.py -> build/lib/lammps -copying lammps/__init__.py -> build/lib/lammps creating build/lib/lammps/mliap copying lammps/mliap/pytorch.py -> build/lib/lammps/mliap -copying lammps/mliap/mliap_unified_abc.py -> build/lib/lammps/mliap -copying lammps/mliap/loader.py -> build/lib/lammps/mliap copying lammps/mliap/__init__.py -> build/lib/lammps/mliap +copying lammps/mliap/loader.py -> build/lib/lammps/mliap copying lammps/mliap/mliap_unified_lj.py -> build/lib/lammps/mliap +copying lammps/mliap/mliap_unified_abc.py -> build/lib/lammps/mliap installing to build/bdist.linux-i686/wheel running install running install_lib creating build/bdist.linux-i686/wheel creating build/bdist.linux-i686/wheel/lammps +copying build/lib/lammps/numpy_wrapper.py -> build/bdist.linux-i686/wheel/./lammps +copying build/lib/lammps/data.py -> build/bdist.linux-i686/wheel/./lammps creating build/bdist.linux-i686/wheel/lammps/mliap copying build/lib/lammps/mliap/pytorch.py -> build/bdist.linux-i686/wheel/./lammps/mliap -copying build/lib/lammps/mliap/mliap_unified_abc.py -> build/bdist.linux-i686/wheel/./lammps/mliap -copying build/lib/lammps/mliap/loader.py -> build/bdist.linux-i686/wheel/./lammps/mliap copying build/lib/lammps/mliap/__init__.py -> build/bdist.linux-i686/wheel/./lammps/mliap +copying build/lib/lammps/mliap/loader.py -> build/bdist.linux-i686/wheel/./lammps/mliap copying build/lib/lammps/mliap/mliap_unified_lj.py -> build/bdist.linux-i686/wheel/./lammps/mliap -copying build/lib/lammps/numpy_wrapper.py -> build/bdist.linux-i686/wheel/./lammps +copying build/lib/lammps/mliap/mliap_unified_abc.py -> build/bdist.linux-i686/wheel/./lammps/mliap copying build/lib/lammps/core.py -> build/bdist.linux-i686/wheel/./lammps -copying build/lib/lammps/data.py -> build/bdist.linux-i686/wheel/./lammps +copying build/lib/lammps/__init__.py -> build/bdist.linux-i686/wheel/./lammps copying build/lib/lammps/formats.py -> build/bdist.linux-i686/wheel/./lammps copying build/lib/lammps/constants.py -> build/bdist.linux-i686/wheel/./lammps copying build/lib/lammps/pylammps.py -> build/bdist.linux-i686/wheel/./lammps -copying build/lib/lammps/__init__.py -> build/bdist.linux-i686/wheel/./lammps running install_egg_info running egg_info creating lammps.egg-info @@ -14388,7 +14397,7 @@ Copying lammps.egg-info to build/bdist.linux-i686/wheel/./lammps-2024.2.7.egg-info running install_scripts creating build/bdist.linux-i686/wheel/lammps-2024.2.7.dist-info/WHEEL -creating '/build/reproducible-path/lammps-20240207+dfsg/.pybuild/cpython3_3.13_lammps/.tmp-obdxji8f/lammps-2024.2.7-py3-none-any.whl' and adding 'build/bdist.linux-i686/wheel' to it +creating '/build/reproducible-path/lammps-20240207+dfsg/.pybuild/cpython3_3.13_lammps/.tmp-zbrt__25/lammps-2024.2.7-py3-none-any.whl' and adding 'build/bdist.linux-i686/wheel' to it adding 'lammps/__init__.py' adding 'lammps/constants.py' adding 'lammps/core.py' @@ -14428,36 +14437,36 @@ running build_py creating build/lib/lammps copying lammps/numpy_wrapper.py -> build/lib/lammps -copying lammps/core.py -> build/lib/lammps copying lammps/data.py -> build/lib/lammps +copying lammps/core.py -> build/lib/lammps +copying lammps/__init__.py -> build/lib/lammps copying lammps/formats.py -> build/lib/lammps copying lammps/constants.py -> build/lib/lammps copying lammps/pylammps.py -> build/lib/lammps -copying lammps/__init__.py -> build/lib/lammps creating build/lib/lammps/mliap copying lammps/mliap/pytorch.py -> build/lib/lammps/mliap -copying lammps/mliap/mliap_unified_abc.py -> build/lib/lammps/mliap -copying lammps/mliap/loader.py -> build/lib/lammps/mliap copying lammps/mliap/__init__.py -> build/lib/lammps/mliap +copying lammps/mliap/loader.py -> build/lib/lammps/mliap copying lammps/mliap/mliap_unified_lj.py -> build/lib/lammps/mliap +copying lammps/mliap/mliap_unified_abc.py -> build/lib/lammps/mliap installing to build/bdist.linux-i686/wheel running install running install_lib creating build/bdist.linux-i686/wheel creating build/bdist.linux-i686/wheel/lammps +copying build/lib/lammps/numpy_wrapper.py -> build/bdist.linux-i686/wheel/./lammps +copying build/lib/lammps/data.py -> build/bdist.linux-i686/wheel/./lammps creating build/bdist.linux-i686/wheel/lammps/mliap copying build/lib/lammps/mliap/pytorch.py -> build/bdist.linux-i686/wheel/./lammps/mliap -copying build/lib/lammps/mliap/mliap_unified_abc.py -> build/bdist.linux-i686/wheel/./lammps/mliap -copying build/lib/lammps/mliap/loader.py -> build/bdist.linux-i686/wheel/./lammps/mliap copying build/lib/lammps/mliap/__init__.py -> build/bdist.linux-i686/wheel/./lammps/mliap +copying build/lib/lammps/mliap/loader.py -> build/bdist.linux-i686/wheel/./lammps/mliap copying build/lib/lammps/mliap/mliap_unified_lj.py -> build/bdist.linux-i686/wheel/./lammps/mliap -copying build/lib/lammps/numpy_wrapper.py -> build/bdist.linux-i686/wheel/./lammps +copying build/lib/lammps/mliap/mliap_unified_abc.py -> build/bdist.linux-i686/wheel/./lammps/mliap copying build/lib/lammps/core.py -> build/bdist.linux-i686/wheel/./lammps -copying build/lib/lammps/data.py -> build/bdist.linux-i686/wheel/./lammps +copying build/lib/lammps/__init__.py -> build/bdist.linux-i686/wheel/./lammps copying build/lib/lammps/formats.py -> build/bdist.linux-i686/wheel/./lammps copying build/lib/lammps/constants.py -> build/bdist.linux-i686/wheel/./lammps copying build/lib/lammps/pylammps.py -> build/bdist.linux-i686/wheel/./lammps -copying build/lib/lammps/__init__.py -> build/bdist.linux-i686/wheel/./lammps running install_egg_info running egg_info creating lammps.egg-info @@ -14470,7 +14479,7 @@ Copying lammps.egg-info to build/bdist.linux-i686/wheel/./lammps-2024.2.7.egg-info running install_scripts creating build/bdist.linux-i686/wheel/lammps-2024.2.7.dist-info/WHEEL -creating '/build/reproducible-path/lammps-20240207+dfsg/.pybuild/cpython3_3.12_lammps/.tmp-xap8z_wz/lammps-2024.2.7-py3-none-any.whl' and adding 'build/bdist.linux-i686/wheel' to it +creating '/build/reproducible-path/lammps-20240207+dfsg/.pybuild/cpython3_3.12_lammps/.tmp-9xwxytmu/lammps-2024.2.7-py3-none-any.whl' and adding 'build/bdist.linux-i686/wheel' to it adding 'lammps/__init__.py' adding 'lammps/constants.py' adding 'lammps/core.py' @@ -14534,7 +14543,7 @@ 1 by 1 by 1 MPI processor grid Created 4000 atoms using lattice units in orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) - create_atoms CPU = 0.001 seconds + create_atoms CPU = 0.006 seconds Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update: every = 20 steps, delay = 0 steps, check = no @@ -14556,20 +14565,20 @@ Step Temp E_pair E_mol TotEng Press 0 1.44 -6.7733681 0 -4.6139081 -5.0199732 100 0.75715334 -5.7581426 0 -4.6226965 0.20850222 -Loop time of 0.457168 on 1 procs for 100 steps with 4000 atoms +Loop time of 1.77101 on 1 procs for 100 steps with 4000 atoms -Performance: 94494.802 tau/day, 218.738 timesteps/s, 874.952 katom-step/s -100.0% CPU use with 1 MPI tasks x 1 OpenMP threads +Performance: 24392.915 tau/day, 56.465 timesteps/s, 225.860 katom-step/s +68.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- -Pair | 0.40101 | 0.40101 | 0.40101 | 0.0 | 87.72 -Neigh | 0.044256 | 0.044256 | 0.044256 | 0.0 | 9.68 -Comm | 0.0047166 | 0.0047166 | 0.0047166 | 0.0 | 1.03 -Output | 3.8566e-05 | 3.8566e-05 | 3.8566e-05 | 0.0 | 0.01 -Modify | 0.0058766 | 0.0058766 | 0.0058766 | 0.0 | 1.29 -Other | | 0.00127 | | | 0.28 +Pair | 1.5594 | 1.5594 | 1.5594 | 0.0 | 88.05 +Neigh | 0.14329 | 0.14329 | 0.14329 | 0.0 | 8.09 +Comm | 0.028082 | 0.028082 | 0.028082 | 0.0 | 1.59 +Output | 0.00031932 | 0.00031932 | 0.00031932 | 0.0 | 0.02 +Modify | 0.0214 | 0.0214 | 0.0214 | 0.0 | 1.21 +Other | | 0.01848 | | | 1.04 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 @@ -14592,7 +14601,7 @@ Natoms from get_natoms = 4000 Global coords from gather_atoms = 16.767988851705518 16.621004261651624 0.14158807746974902 Changed x[0][0] via scatter_atoms = 17.767988851705518 -Total wall time: 0:00:00 +Total wall time: 0:00:01 make[1]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg' dh_python3 -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build dh_installsystemduser -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build @@ -14608,3197 +14617,3197 @@ debian/rules execute_after_dh_fixperms-indep make[1]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg' find /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/ -type f -a -not -name *.sh -print -exec chmod 644 {} \; -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/deposit/in.deposit.molecule.rigid-small 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+/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/airebo/log.30Apr2019.rebo2.g++.4 +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/airebo/in.rebo2 +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/ellipse/log.27Nov18.ellipse.resquared.g++.4 +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/ellipse/in.ellipse.resquared +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/ellipse/log.27Nov18.ellipse.gayberne.g++.1 +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/ellipse/log.27Nov18.ellipse.resquared.g++.1 +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/ellipse/in.ellipse.gayberne +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/ellipse/log.27Nov18.ellipse.gayberne.g++.4 make[1]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg' dh_missing -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build debian/rules override_dh_dwz @@ -17817,14 +17826,14 @@ dh_md5sums -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build dh_builddeb -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build dpkg-deb: building package 'lammps-dbgsym' in '../lammps-dbgsym_20240207+dfsg-2_i386.deb'. -dpkg-deb: building package 'lammps' in '../lammps_20240207+dfsg-2_i386.deb'. -dpkg-deb: building package 'liblammps-dev' in '../liblammps-dev_20240207+dfsg-2_i386.deb'. dpkg-deb: building package 'liblammps0t64-dbgsym' in '../liblammps0t64-dbgsym_20240207+dfsg-2_i386.deb'. +dpkg-deb: building package 'lammps-examples' in '../lammps-examples_20240207+dfsg-2_all.deb'. +dpkg-deb: building package 'lammps-data' in '../lammps-data_20240207+dfsg-2_all.deb'. dpkg-deb: building package 'liblammps0t64' in '../liblammps0t64_20240207+dfsg-2_i386.deb'. -dpkg-deb: building package 'python3-lammps' in '../python3-lammps_20240207+dfsg-2_i386.deb'. +dpkg-deb: building package 'liblammps-dev' in '../liblammps-dev_20240207+dfsg-2_i386.deb'. dpkg-deb: building package 'lammps-doc' in '../lammps-doc_20240207+dfsg-2_all.deb'. -dpkg-deb: building package 'lammps-data' in '../lammps-data_20240207+dfsg-2_all.deb'. -dpkg-deb: building package 'lammps-examples' in '../lammps-examples_20240207+dfsg-2_all.deb'. +dpkg-deb: building package 'lammps' in '../lammps_20240207+dfsg-2_i386.deb'. +dpkg-deb: building package 'python3-lammps' in '../python3-lammps_20240207+dfsg-2_i386.deb'. dpkg-genbuildinfo --build=binary -O../lammps_20240207+dfsg-2_i386.buildinfo dpkg-genchanges --build=binary -O../lammps_20240207+dfsg-2_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -17832,12 +17841,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/27771/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/27771/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/93790 and its subdirectories -I: Current time: Fri Jan 16 10:08:31 -12 2026 -I: pbuilder-time-stamp: 1768601311 +I: removing directory /srv/workspace/pbuilder/27771 and its subdirectories +I: Current time: Sun Dec 15 06:45:08 +14 2024 +I: pbuilder-time-stamp: 1734194708