Diff of the two buildlogs: -- --- b1/build.log 2024-12-19 18:37:33.860868905 +0000 +++ b2/build.log 2024-12-19 19:01:43.459396964 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Jan 21 11:11:12 -12 2026 -I: pbuilder-time-stamp: 1769037072 +I: Current time: Fri Dec 20 08:37:38 +14 2024 +I: pbuilder-time-stamp: 1734633458 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -30,54 +30,86 @@ dpkg-source: info: applying reproducible_build.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/73570/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/47431/tmp/hooks/D01_modify_environment starting +debug: Running on ionos12-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 19 18:37 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/47431/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/47431/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=10 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='a12471cd75f64979ba221af3ea4a9600' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='73570' - PS1='# ' - PS2='> ' + INVOCATION_ID=60d29e9d7c2144f0a36634b493eb1236 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=47431 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.2Cz8DsF3/pbuilderrc_Bn8O --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.2Cz8DsF3/b1 --logfile b1/build.log infernal_1.1.5-3.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.2Cz8DsF3/pbuilderrc_k9EG --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.2Cz8DsF3/b2 --logfile b2/build.log infernal_1.1.5-3.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos16-i386 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/73570/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/47431/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -169,7 +201,7 @@ Get: 50 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 51 http://deb.debian.org/debian unstable/main i386 debhelper all 13.22 [919 kB] Get: 52 http://deb.debian.org/debian unstable/main i386 libperl4-corelibs-perl all 0.005-1 [39.0 kB] -Fetched 27.4 MB in 0s (57.0 MB/s) +Fetched 27.4 MB in 2s (16.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19953 files and directories currently installed.) @@ -360,8 +392,8 @@ Setting up tzdata (2024b-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Wed Jan 21 23:11:52 UTC 2026. -Universal Time is now: Wed Jan 21 23:11:52 UTC 2026. +Local time is now: Thu Dec 19 18:38:16 UTC 2024. +Universal Time is now: Thu Dec 19 18:38:16 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... @@ -406,7 +438,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/infernal-1.1.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../infernal_1.1.5-3_source.changes +I: user script /srv/workspace/pbuilder/47431/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/47431/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/infernal-1.1.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../infernal_1.1.5-3_source.changes dpkg-buildpackage: info: source package infernal dpkg-buildpackage: info: source version 1.1.5-3 dpkg-buildpackage: info: source distribution unstable @@ -627,7 +663,7 @@ debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/reproducible-path/infernal-1.1.5' dh_auto_build -a -- V=1 - make -j22 V=1 + make -j10 V=1 make[2]: Entering directory '/build/reproducible-path/infernal-1.1.5' make -C easel all make[3]: Entering directory '/build/reproducible-path/infernal-1.1.5/easel' @@ -994,47 +1030,47 @@ make[2]: Leaving directory '/build/reproducible-path/infernal-1.1.5' make[1]: Leaving directory '/build/reproducible-path/infernal-1.1.5' dh_auto_test - make -j22 check "TESTSUITEFLAGS=-j22 --verbose" VERBOSE=1 + make -j10 check "TESTSUITEFLAGS=-j10 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/infernal-1.1.5' SUBDIR easel make[2]: Entering directory '/build/reproducible-path/infernal-1.1.5/easel' - GEN esl_exponential_utest - GEN esl_graph_utest - GEN esl_getopts_utest - GEN esl_bitfield_utest + GEN esl_alloc_utest + GEN esl_cluster_utest GEN easel_utest - GEN esl_dmatrix_utest - GEN esl_dirichlet_utest - GEN esl_heap_utest - GEN esl_huffman_utest - GEN esl_histogram_utest - GEN esl_cpu_utest GEN esl_buffer_utest - GEN esl_cluster_utest - GEN esl_hmm_utest GEN esl_alphabet_utest - GEN esl_gamma_utest - GEN esl_fileparser_utest - GEN esl_alloc_utest - GEN esl_dsqdata_utest + GEN esl_cpu_utest + GEN esl_dirichlet_utest GEN esl_distance_utest - GEN esl_gumbel_utest + GEN esl_dmatrix_utest + GEN esl_bitfield_utest + GEN esl_dsqdata_utest + GEN esl_exponential_utest + GEN esl_fileparser_utest + GEN esl_gamma_utest GEN esl_gencode_utest - GEN esl_hyperexp_utest + GEN esl_getopts_utest + GEN esl_graph_utest + GEN esl_gumbel_utest + GEN esl_heap_utest + GEN esl_histogram_utest + GEN esl_hmm_utest + GEN esl_huffman_utest GEN esl_iset_utest + GEN esl_hyperexp_utest GEN esl_json_utest GEN esl_keyhash_utest + GEN esl_lognormal_utest GEN esl_matrixops_utest GEN esl_mem_utest - GEN esl_lognormal_utest GEN esl_minimizer_utest GEN esl_mixdchlet_utest GEN esl_msa_utest GEN esl_msacluster_utest GEN esl_msafile_utest - GEN esl_msafile_afa_utest GEN esl_msafile2_utest GEN esl_msafile_a2m_utest + GEN esl_msafile_afa_utest GEN esl_msafile_clustal_utest GEN esl_msafile_phylip_utest GEN esl_msafile_psiblast_utest @@ -1054,8 +1090,8 @@ GEN esl_scorematrix_utest GEN esl_sq_utest GEN esl_sqio_utest - GEN esl_stack_utest GEN esl_ssi_utest + GEN esl_stack_utest GEN esl_stats_utest GEN esl_stretchexp_utest GEN esl_tree_utest @@ -1082,40 +1118,40 @@ SUBDIR impl_sse CC itest_brute.o GEN generic_fwdback_chk_utest - GEN generic_msv_utest - GEN generic_viterbi_utest - GEN logsum_utest GEN generic_fwdback_utest - GEN modelconfig_utest - GEN build_utest + GEN generic_viterbi_utest GEN hmmer_utest + GEN build_utest + GEN generic_msv_utest GEN generic_stotrace_utest + GEN modelconfig_utest + GEN logsum_utest GEN seqmodel_utest - GEN p7_bg_utest GEN p7_alidisplay_utest + GEN p7_bg_utest GEN p7_domain_utest GEN p7_gmx_utest + GEN p7_gmxchk_utest + GEN p7_hit_utest GEN p7_hmmd_search_stats_utest + GEN p7_hmm_utest GEN p7_hmmfile_utest - GEN p7_gmxchk_utest GEN p7_profile_utest - GEN p7_hmm_utest GEN p7_tophits_utest - GEN p7_hit_utest GEN p7_trace_utest GEN p7_scoredata_utest GEN hmmpgmd2msa_utest GEN hmmd_search_status_utest GEN itest_brute SUBDIR impl_sse - GEN null2_utest - GEN stotrace_utest - GEN vitfilter_utest + GEN decoding_utest GEN io_utest + GEN stotrace_utest + GEN msvfilter_utest + GEN null2_utest GEN fwdback_utest GEN optacc_utest - GEN msvfilter_utest - GEN decoding_utest + GEN vitfilter_utest make[2]: Leaving directory '/build/reproducible-path/infernal-1.1.5/hmmer' SUBDIR src make[2]: Entering directory '/build/reproducible-path/infernal-1.1.5/src' @@ -1230,8 +1266,8 @@ System information: -Wed Jan 21 11:15:01 -12 2026 -Linux ionos16-i386 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux +Fri Dec 20 08:41:40 +14 2024 +Linux i-capture-the-hostname 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux make[2]: Leaving directory '/build/reproducible-path/infernal-1.1.5/easel' SUBDIR hmmer/testsuite make[2]: Entering directory '/build/reproducible-path/infernal-1.1.5/hmmer/testsuite' @@ -1550,8 +1586,8 @@ System information: -Wed Jan 21 11:15:56 -12 2026 -Linux ionos16-i386 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux +Fri Dec 20 08:42:13 +14 2024 +Linux i-capture-the-hostname 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux make[2]: Leaving directory '/build/reproducible-path/infernal-1.1.5/hmmer/testsuite' SUBDIR testsuite make[2]: Entering directory '/build/reproducible-path/infernal-1.1.5/testsuite' @@ -1733,15 +1769,15 @@ System information: -Wed Jan 21 12:58:02 -12 2026 -Linux ionos16-i386 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux +Fri Dec 20 09:00:22 +14 2024 +Linux i-capture-the-hostname 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux make[2]: Leaving directory '/build/reproducible-path/infernal-1.1.5/testsuite' make[1]: Leaving directory '/build/reproducible-path/infernal-1.1.5' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install-arch make[1]: Entering directory '/build/reproducible-path/infernal-1.1.5' -/usr/bin/make install -j24 AM_UPDATE_INFO_DIR=no V=1 prefix=/build/reproducible-path/infernal-1.1.5/debian/tmp +/usr/bin/make install -j13 AM_UPDATE_INFO_DIR=no V=1 prefix=/build/reproducible-path/infernal-1.1.5/debian/tmp make[2]: Entering directory '/build/reproducible-path/infernal-1.1.5' /usr/bin/install -c -d /build/reproducible-path/infernal-1.1.5/debian/tmp/bin /usr/bin/install -c -d /build/reproducible-path/infernal-1.1.5/debian/tmp/share/man/man1 @@ -1815,8 +1851,8 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'infernal' in '../infernal_1.1.5-3_i386.deb'. dpkg-deb: building package 'infernal-doc' in '../infernal-doc_1.1.5-3_all.deb'. +dpkg-deb: building package 'infernal' in '../infernal_1.1.5-3_i386.deb'. dpkg-deb: building package 'infernal-dbgsym' in '../infernal-dbgsym_1.1.5-3_i386.deb'. dpkg-genbuildinfo --build=binary -O../infernal_1.1.5-3_i386.buildinfo dpkg-genchanges --build=binary -O../infernal_1.1.5-3_i386.changes @@ -1825,12 +1861,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/47431/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/47431/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/73570 and its subdirectories -I: Current time: Wed Jan 21 13:00:32 -12 2026 -I: pbuilder-time-stamp: 1769043632 +I: removing directory /srv/workspace/pbuilder/47431 and its subdirectories +I: Current time: Fri Dec 20 09:01:42 +14 2024 +I: pbuilder-time-stamp: 1734634902