Diff of the two buildlogs: -- --- b1/build.log 2024-04-29 02:34:34.409403368 +0000 +++ b2/build.log 2024-04-29 02:54:10.291289585 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Apr 28 14:11:11 -12 2024 -I: pbuilder-time-stamp: 1714356671 +I: Current time: Sun Jun 1 22:57:37 +14 2025 +I: pbuilder-time-stamp: 1748768257 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -29,54 +29,86 @@ dpkg-source: info: applying reproducible_build.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/10147/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/127740/tmp/hooks/D01_modify_environment starting +debug: Running on ionos16-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 1 08:57 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/127740/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/127740/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=21 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='6a6a98fdae09465ba6b505140aabef6c' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='10147' - PS1='# ' - PS2='> ' + INVOCATION_ID=3786faf3892c4bf6a0801863e5584c6d + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=127740 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.mi5XZe4f/pbuilderrc_d1Kj --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.mi5XZe4f/b1 --logfile b1/build.log infernal_1.1.5-2.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.mi5XZe4f/pbuilderrc_xNhe --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.mi5XZe4f/b2 --logfile b2/build.log infernal_1.1.5-2.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos12-i386 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Apr 27 07:42 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/10147/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 31 14:06 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/127740/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -160,7 +192,7 @@ Get: 42 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 43 http://deb.debian.org/debian unstable/main i386 debhelper all 13.15.3 [901 kB] Get: 44 http://deb.debian.org/debian unstable/main i386 libperl4-corelibs-perl all 0.005-1 [39.0 kB] -Fetched 25.2 MB in 1s (44.4 MB/s) +Fetched 25.2 MB in 0s (80.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19679 files and directories currently installed.) @@ -321,8 +353,8 @@ Setting up tzdata (2024a-3) ... Current default time zone: 'Etc/UTC' -Local time is now: Mon Apr 29 02:11:41 UTC 2024. -Universal Time is now: Mon Apr 29 02:11:41 UTC 2024. +Local time is now: Sun Jun 1 08:58:02 UTC 2025. +Universal Time is now: Sun Jun 1 08:58:02 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... @@ -363,7 +395,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/infernal-1.1.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../infernal_1.1.5-2_source.changes +I: user script /srv/workspace/pbuilder/127740/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/127740/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/infernal-1.1.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../infernal_1.1.5-2_source.changes dpkg-buildpackage: info: source package infernal dpkg-buildpackage: info: source version 1.1.5-2 dpkg-buildpackage: info: source distribution unstable @@ -592,7 +628,7 @@ debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/reproducible-path/infernal-1.1.5' dh_auto_build -a -- V=1 - make -j11 V=1 + make -j21 V=1 make[2]: Entering directory '/build/reproducible-path/infernal-1.1.5' make -C easel all make[3]: Entering directory '/build/reproducible-path/infernal-1.1.5/easel' @@ -777,6 +813,24 @@ gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_gmxb.o -c p7_gmxb.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_gmxchk.o -c p7_gmxchk.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_hit.o -c p7_hit.c +gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_hmm.o -c p7_hmm.c +gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_hmmcache.o -c p7_hmmcache.c +gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_hmmd_search_stats.o -c p7_hmmd_search_stats.c +gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_hmmfile.o -c p7_hmmfile.c +gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_hmmwindow.o -c p7_hmmwindow.c +gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_pipeline.o -c p7_pipeline.c +gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_prior.o -c p7_prior.c +gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_profile.o -c p7_profile.c +gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_spensemble.o -c p7_spensemble.c +gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_tophits.o -c p7_tophits.c +gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_trace.o -c p7_trace.c +gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_scoredata.o -c p7_scoredata.c +gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o hmmpgmd2msa.o -c hmmpgmd2msa.c +gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o fm_alphabet.o -c fm_alphabet.c +gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o fm_general.o -c fm_general.c +gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o fm_sse.o -c fm_sse.c +gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o fm_ssv.o -c fm_ssv.c +gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o hmmalign.o -c hmmalign.c In file included from /usr/include/string.h:535, from hmmdmstr_shard.c:10: In function 'memset', @@ -788,6 +842,7 @@ 60 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/i386-linux-gnu/bits/string_fortified.h:59:10: note: in a call to built-in function '__builtin_memset' +gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o hmmbuild.o -c hmmbuild.c In file included from /usr/include/string.h:535, from hmmdmstr.c:10: In function 'memset', @@ -799,25 +854,6 @@ 60 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/i386-linux-gnu/bits/string_fortified.h:59:10: note: in a call to built-in function '__builtin_memset' -gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_hmm.o -c p7_hmm.c -gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_hmmcache.o -c p7_hmmcache.c -gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_hmmd_search_stats.o -c p7_hmmd_search_stats.c -gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_hmmfile.o -c p7_hmmfile.c -gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_hmmwindow.o -c p7_hmmwindow.c -gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_pipeline.o -c p7_pipeline.c -gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_prior.o -c p7_prior.c -gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_profile.o -c p7_profile.c -gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_spensemble.o -c p7_spensemble.c -gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_tophits.o -c p7_tophits.c -gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_trace.o -c p7_trace.c -gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o p7_scoredata.o -c p7_scoredata.c -gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o hmmpgmd2msa.o -c hmmpgmd2msa.c -gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o fm_alphabet.o -c fm_alphabet.c -gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o fm_general.o -c fm_general.c -gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o fm_sse.o -c fm_sse.c -gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o fm_ssv.o -c fm_ssv.c -gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o hmmalign.o -c hmmalign.c -gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o hmmbuild.o -c hmmbuild.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o hmmconvert.o -c hmmconvert.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o hmmemit.o -c hmmemit.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/infernal-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../../easel -I. -I. -I../libdivsufsort -o hmmfetch.o -c hmmfetch.c @@ -981,36 +1017,36 @@ make[2]: Leaving directory '/build/reproducible-path/infernal-1.1.5' make[1]: Leaving directory '/build/reproducible-path/infernal-1.1.5' dh_auto_test - make -j11 check "TESTSUITEFLAGS=-j11 --verbose" VERBOSE=1 + make -j21 check "TESTSUITEFLAGS=-j21 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/infernal-1.1.5' SUBDIR easel make[2]: Entering directory '/build/reproducible-path/infernal-1.1.5/easel' - GEN easel_utest - GEN esl_alloc_utest GEN esl_alphabet_utest - GEN esl_buffer_utest - GEN esl_cluster_utest GEN esl_bitfield_utest - GEN esl_cpu_utest + GEN esl_cluster_utest + GEN esl_fileparser_utest GEN esl_dirichlet_utest + GEN esl_cpu_utest GEN esl_distance_utest - GEN esl_dmatrix_utest GEN esl_dsqdata_utest - GEN esl_exponential_utest - GEN esl_fileparser_utest - GEN esl_gamma_utest + GEN esl_dmatrix_utest GEN esl_gencode_utest + GEN esl_buffer_utest + GEN esl_alloc_utest + GEN easel_utest + GEN esl_gamma_utest GEN esl_getopts_utest - GEN esl_graph_utest - GEN esl_gumbel_utest + GEN esl_exponential_utest GEN esl_heap_utest + GEN esl_gumbel_utest + GEN esl_graph_utest GEN esl_histogram_utest GEN esl_hmm_utest GEN esl_huffman_utest GEN esl_hyperexp_utest GEN esl_iset_utest - GEN esl_json_utest GEN esl_keyhash_utest + GEN esl_json_utest GEN esl_lognormal_utest GEN esl_matrixops_utest GEN esl_mem_utest @@ -1018,9 +1054,9 @@ GEN esl_mixdchlet_utest GEN esl_msa_utest GEN esl_msacluster_utest - GEN esl_msafile_utest GEN esl_msafile2_utest GEN esl_msafile_a2m_utest + GEN esl_msafile_utest GEN esl_msafile_afa_utest GEN esl_msafile_clustal_utest GEN esl_msafile_phylip_utest @@ -1029,16 +1065,16 @@ GEN esl_msafile_stockholm_utest GEN esl_msaweight_utest GEN esl_normal_utest - GEN esl_quicksort_utest GEN esl_random_utest + GEN esl_quicksort_utest GEN esl_rand64_utest GEN esl_randomseq_utest GEN esl_ratematrix_utest GEN esl_red_black_utest - GEN esl_regexp_utest GEN esl_recorder_utest - GEN esl_rootfinder_utest + GEN esl_regexp_utest GEN esl_scorematrix_utest + GEN esl_rootfinder_utest GEN esl_sq_utest GEN esl_sqio_utest GEN esl_ssi_utest @@ -1072,39 +1108,39 @@ SUBDIR impl_sse CC itest_brute.o GEN build_utest - GEN generic_fwdback_chk_utest GEN generic_fwdback_utest + GEN generic_fwdback_chk_utest GEN generic_msv_utest GEN generic_viterbi_utest - GEN generic_stotrace_utest GEN hmmer_utest GEN logsum_utest + GEN generic_stotrace_utest GEN modelconfig_utest - GEN seqmodel_utest GEN p7_alidisplay_utest - GEN p7_bg_utest + GEN seqmodel_utest GEN p7_domain_utest + GEN p7_bg_utest GEN p7_gmx_utest GEN p7_gmxchk_utest - GEN p7_hit_utest GEN p7_hmmd_search_stats_utest GEN p7_hmm_utest + GEN p7_hit_utest GEN p7_hmmfile_utest GEN p7_profile_utest - GEN p7_trace_utest GEN p7_tophits_utest + GEN p7_trace_utest GEN p7_scoredata_utest + GEN hmmd_search_status_utest GEN hmmpgmd2msa_utest GEN itest_brute - GEN hmmd_search_status_utest SUBDIR impl_sse make[4]: Entering directory '/build/reproducible-path/infernal-1.1.5/hmmer/src/impl_sse' - GEN fwdback_utest GEN decoding_utest - GEN msvfilter_utest + GEN fwdback_utest GEN io_utest - GEN optacc_utest + GEN msvfilter_utest GEN null2_utest + GEN optacc_utest GEN vitfilter_utest GEN stotrace_utest make[4]: Leaving directory '/build/reproducible-path/infernal-1.1.5/hmmer/src/impl_sse' @@ -1224,8 +1260,8 @@ System information: -Sun Apr 28 14:15:18 -12 2024 -Linux ionos12-i386 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux +Sun Jun 1 22:59:23 +14 2025 +Linux i-capture-the-hostname 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux make[3]: Leaving directory '/build/reproducible-path/infernal-1.1.5/easel/testsuite' make[2]: Leaving directory '/build/reproducible-path/infernal-1.1.5/easel' SUBDIR hmmer/testsuite @@ -1545,8 +1581,8 @@ System information: -Sun Apr 28 14:15:54 -12 2024 -Linux ionos12-i386 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux +Sun Jun 1 22:59:54 +14 2025 +Linux i-capture-the-hostname 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux make[2]: Leaving directory '/build/reproducible-path/infernal-1.1.5/hmmer/testsuite' SUBDIR testsuite make[2]: Entering directory '/build/reproducible-path/infernal-1.1.5/testsuite' @@ -1728,15 +1764,15 @@ System information: -Sun Apr 28 14:33:41 -12 2024 -Linux ionos12-i386 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux +Sun Jun 1 23:16:33 +14 2025 +Linux i-capture-the-hostname 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux make[2]: Leaving directory '/build/reproducible-path/infernal-1.1.5/testsuite' make[1]: Leaving directory '/build/reproducible-path/infernal-1.1.5' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install-arch make[1]: Entering directory '/build/reproducible-path/infernal-1.1.5' -/usr/bin/make install -j13 AM_UPDATE_INFO_DIR=no V=1 prefix=/build/reproducible-path/infernal-1.1.5/debian/tmp +/usr/bin/make install -j24 AM_UPDATE_INFO_DIR=no V=1 prefix=/build/reproducible-path/infernal-1.1.5/debian/tmp make[2]: Entering directory '/build/reproducible-path/infernal-1.1.5' /usr/bin/install -c -d /build/reproducible-path/infernal-1.1.5/debian/tmp/bin /usr/bin/install -c -d /build/reproducible-path/infernal-1.1.5/debian/tmp/share/man/man1 @@ -1821,12 +1857,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/127740/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/127740/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/10147 and its subdirectories -I: Current time: Sun Apr 28 14:34:33 -12 2024 -I: pbuilder-time-stamp: 1714358073 +I: removing directory /srv/workspace/pbuilder/127740 and its subdirectories +I: Current time: Sun Jun 1 23:17:09 +14 2025 +I: pbuilder-time-stamp: 1748769429