Diff of the two buildlogs: -- --- b1/build.log 2024-11-04 18:32:25.449638219 +0000 +++ b2/build.log 2024-11-04 18:34:52.388405350 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Dec 7 12:52:38 -12 2025 -I: pbuilder-time-stamp: 1765155158 +I: Current time: Tue Nov 5 08:32:28 +14 2024 +I: pbuilder-time-stamp: 1730745148 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -35,53 +35,85 @@ dpkg-source: info: applying trim-file-prefix.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/6191/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/29481/tmp/hooks/D01_modify_environment starting +debug: Running on infom07-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 4 18:32 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/29481/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/29481/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=5 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='0f90043985644c07a814748c54b96673' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='6191' - PS1='# ' - PS2='> ' + INVOCATION_ID=25e62c85163545e782aed15c334d1846 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=29481 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.JmYybj3L/pbuilderrc_aBvU --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.JmYybj3L/b1 --logfile b1/build.log htslib_1.20+ds-2.dsc' - SUDO_GID='111' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.JmYybj3L/pbuilderrc_kGjB --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.JmYybj3L/b2 --logfile b2/build.log htslib_1.20+ds-2.dsc' + SUDO_GID=111 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom08-i386 6.10.11+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.10.11-1~bpo12+1 (2024-10-03) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-26-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.112-1 (2024-09-30) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/6191/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/29481/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -210,7 +242,7 @@ Get: 77 http://deb.debian.org/debian unstable/main i386 libhtscodecs2 i386 1.6.1-1 [70.8 kB] Get: 78 http://deb.debian.org/debian unstable/main i386 libhtscodecs-dev i386 1.6.1-1 [2974 kB] Get: 79 http://deb.debian.org/debian unstable/main i386 liblzma-dev i386 5.6.3-1+b1 [328 kB] -Fetched 37.9 MB in 3s (14.6 MB/s) +Fetched 37.9 MB in 1s (35.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19954 files and directories currently installed.) @@ -541,7 +573,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/htslib-1.20+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../htslib_1.20+ds-2_source.changes +I: user script /srv/workspace/pbuilder/29481/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/29481/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/htslib-1.20+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../htslib_1.20+ds-2_source.changes dpkg-buildpackage: info: source package htslib dpkg-buildpackage: info: source version 1.20+ds-2 dpkg-buildpackage: info: source distribution unstable @@ -554,7 +590,7 @@ debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/htslib-1.20+ds' dh_auto_clean - make -j6 distclean + make -j5 distclean make[2]: Entering directory '/build/reproducible-path/htslib-1.20+ds' rm -f test/*.tmp test/*.tmp.* test/faidx/*.tmp* test/faidx/FAIL* \ test/longrefs/*.tmp.* test/tabix/*.tmp.* test/tabix/FAIL* \ @@ -696,7 +732,7 @@ CPPFLAGS="-I. -DSAMTOOLS=1 $(dpkg-buildflags --get CPPFLAGS)" \ PACKAGE_VERSION="1.20" \ libdir=/usr/lib/i386-linux-gnu - make -j6 "CFLAGS=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.20+ds=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" PACKAGE_VERSION=1.20 libdir=/usr/lib/i386-linux-gnu + make -j5 "CFLAGS=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.20+ds=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" PACKAGE_VERSION=1.20 libdir=/usr/lib/i386-linux-gnu make[2]: Entering directory '/build/reproducible-path/htslib-1.20+ds' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.20+ds=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kfunc.o kfunc.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.20+ds=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kstring.o kstring.c @@ -820,10 +856,10 @@ sed -n '/^static_libs=/s/[^=]*=/HTSLIB_static_LIBS = /p;/^static_ldflags=/s/[^=]*=/HTSLIB_static_LDFLAGS = /p' htslib.pc.tmp > htslib_static.mk sed -e 's#@-includedir@#'`pwd`'#g;s#@-libdir@#'`pwd`'#g' htslib.pc.tmp > htslib-uninstalled.pc gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.20+ds=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hts.o hts.c +gcc -shared -Wl,-soname,libhts.so.3 -Wl,-version-script,htslib.map -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o libhts.so kfunc.pico kstring.pico bcf_sr_sort.pico bgzf.pico errmod.pico faidx.pico header.pico hfile.pico hts.pico hts_expr.pico hts_os.pico md5.pico multipart.pico probaln.pico realn.pico regidx.pico region.pico sam.pico sam_mods.pico synced_bcf_reader.pico vcf_sweep.pico tbx.pico textutils.pico thread_pool.pico vcf.pico vcfutils.pico cram/cram_codecs.pico cram/cram_decode.pico cram/cram_encode.pico cram/cram_external.pico cram/cram_index.pico cram/cram_io.pico cram/cram_stats.pico cram/mFILE.pico cram/open_trace_file.pico cram/pooled_alloc.pico cram/string_alloc.pico plugin.pico -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/hts_endian test/hts_endian.o -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/plugins-dlhts test/plugins-dlhts.o -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_time_funcs test/test_time_funcs.o -gcc -shared -Wl,-soname,libhts.so.3 -Wl,-version-script,htslib.map -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o libhts.so kfunc.pico kstring.pico bcf_sr_sort.pico bgzf.pico errmod.pico faidx.pico header.pico hfile.pico hts.pico hts_expr.pico hts_os.pico md5.pico multipart.pico probaln.pico realn.pico regidx.pico region.pico sam.pico sam_mods.pico synced_bcf_reader.pico vcf_sweep.pico tbx.pico textutils.pico thread_pool.pico vcf.pico vcfutils.pico cram/cram_codecs.pico cram/cram_decode.pico cram/cram_encode.pico cram/cram_external.pico cram/cram_index.pico cram/cram_io.pico cram/cram_stats.pico cram/mFILE.pico cram/open_trace_file.pico cram/pooled_alloc.pico cram/string_alloc.pico plugin.pico -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread ln -sf libhts.so libhts.so.3 gcc -shared -Wl,-E -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o hfile_libcurl.so hfile_libcurl.pico libhts.so -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lcurl -lpthread gcc -shared -Wl,-E -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o hfile_gcs.so hfile_gcs.pico libhts.so -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread @@ -872,7 +908,7 @@ if find . -name "FAIL*" > /dev/null ; then \ for file in $(find . -name "FAIL*"); do echo ${file}; cat ${file}; done && false ; \ fi - make -j6 test "TESTSUITEFLAGS=-j6 --verbose" VERBOSE=1 "CFLAGS=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.20+ds=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" PACKAGE_VERSION=1.20 libdir=/usr/lib/i386-linux-gnu + make -j5 test "TESTSUITEFLAGS=-j5 --verbose" VERBOSE=1 "CFLAGS=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.20+ds=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" PACKAGE_VERSION=1.20 libdir=/usr/lib/i386-linux-gnu make[2]: Entering directory '/build/reproducible-path/htslib-1.20+ds' test/hts_endian test/test_expr @@ -1120,203 +1156,203 @@ bgzip --output 4 threads: .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view -l 0 -b -m 14 -x /tmp/ChVegwtDTp/index.bam.csi /build/reproducible-path/htslib-1.20+ds/test/index.sam > /tmp/ChVegwtDTp/index.bam + /build/reproducible-path/htslib-1.20+ds/test/test_view -l 0 -b -m 14 -x /tmp/_mJTUZ8j1l/index.bam.csi /build/reproducible-path/htslib-1.20+ds/test/index.sam > /tmp/_mJTUZ8j1l/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_index -c /tmp/ChVegwtDTp/index.bam + /build/reproducible-path/htslib-1.20+ds/test/test_index -c /tmp/_mJTUZ8j1l/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view -l 0 -b -m 0 -x /tmp/ChVegwtDTp/index.bam.bai /build/reproducible-path/htslib-1.20+ds/test/index.sam > /tmp/ChVegwtDTp/index.bam + /build/reproducible-path/htslib-1.20+ds/test/test_view -l 0 -b -m 0 -x /tmp/_mJTUZ8j1l/index.bam.bai /build/reproducible-path/htslib-1.20+ds/test/index.sam > /tmp/_mJTUZ8j1l/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_index -b /tmp/ChVegwtDTp/index.bam + /build/reproducible-path/htslib-1.20+ds/test/test_index -b /tmp/_mJTUZ8j1l/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view -l 0 -z -m 14 -x /tmp/ChVegwtDTp/index.sam.gz.csi /build/reproducible-path/htslib-1.20+ds/test/index.sam > /tmp/ChVegwtDTp/index.sam.gz + /build/reproducible-path/htslib-1.20+ds/test/test_view -l 0 -z -m 14 -x /tmp/_mJTUZ8j1l/index.sam.gz.csi /build/reproducible-path/htslib-1.20+ds/test/index.sam > /tmp/_mJTUZ8j1l/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_index -c /tmp/ChVegwtDTp/index.sam.gz + /build/reproducible-path/htslib-1.20+ds/test/test_index -c /tmp/_mJTUZ8j1l/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view -l 0 -z -m 0 -x /tmp/ChVegwtDTp/index.sam.gz.bai /build/reproducible-path/htslib-1.20+ds/test/index.sam > /tmp/ChVegwtDTp/index.sam.gz + /build/reproducible-path/htslib-1.20+ds/test/test_view -l 0 -z -m 0 -x /tmp/_mJTUZ8j1l/index.sam.gz.bai /build/reproducible-path/htslib-1.20+ds/test/index.sam > /tmp/_mJTUZ8j1l/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_index -b /tmp/ChVegwtDTp/index.sam.gz + /build/reproducible-path/htslib-1.20+ds/test/test_index -b /tmp/_mJTUZ8j1l/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view -l 0 -z -m 14 -x /tmp/ChVegwtDTp/index.sam.gz.csi /build/reproducible-path/htslib-1.20+ds/test/index_dos.sam > /tmp/ChVegwtDTp/index.sam.gz + /build/reproducible-path/htslib-1.20+ds/test/test_view -l 0 -z -m 14 -x /tmp/_mJTUZ8j1l/index.sam.gz.csi /build/reproducible-path/htslib-1.20+ds/test/index_dos.sam > /tmp/_mJTUZ8j1l/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_index -c /tmp/ChVegwtDTp/index.sam.gz + /build/reproducible-path/htslib-1.20+ds/test/test_index -c /tmp/_mJTUZ8j1l/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view -l 0 -z -m 0 -x /tmp/ChVegwtDTp/index.sam.gz.bai /build/reproducible-path/htslib-1.20+ds/test/index_dos.sam > /tmp/ChVegwtDTp/index.sam.gz + /build/reproducible-path/htslib-1.20+ds/test/test_view -l 0 -z -m 0 -x /tmp/_mJTUZ8j1l/index.sam.gz.bai /build/reproducible-path/htslib-1.20+ds/test/index_dos.sam > /tmp/_mJTUZ8j1l/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_index -b /tmp/ChVegwtDTp/index.sam.gz + /build/reproducible-path/htslib-1.20+ds/test/test_index -b /tmp/_mJTUZ8j1l/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view -l 0 -C -x /tmp/ChVegwtDTp/index.cram.crai /build/reproducible-path/htslib-1.20+ds/test/index.sam > /tmp/ChVegwtDTp/index.cram + /build/reproducible-path/htslib-1.20+ds/test/test_view -l 0 -C -x /tmp/_mJTUZ8j1l/index.cram.crai /build/reproducible-path/htslib-1.20+ds/test/index.sam > /tmp/_mJTUZ8j1l/index.cram .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_index /tmp/ChVegwtDTp/index.cram + /build/reproducible-path/htslib-1.20+ds/test/test_index /tmp/_mJTUZ8j1l/index.cram .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view -l 0 -b -m 14 -x /tmp/ChVegwtDTp/index.bcf.csi /build/reproducible-path/htslib-1.20+ds/test/index.vcf > /tmp/ChVegwtDTp/index.bcf + /build/reproducible-path/htslib-1.20+ds/test/test_view -l 0 -b -m 14 -x /tmp/_mJTUZ8j1l/index.bcf.csi /build/reproducible-path/htslib-1.20+ds/test/index.vcf > /tmp/_mJTUZ8j1l/index.bcf .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_index -c /tmp/ChVegwtDTp/index.bcf + /build/reproducible-path/htslib-1.20+ds/test/test_index -c /tmp/_mJTUZ8j1l/index.bcf .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view -l 0 -z -m 14 -x /tmp/ChVegwtDTp/index.vcf.gz.csi /build/reproducible-path/htslib-1.20+ds/test/index.vcf > /tmp/ChVegwtDTp/index.vcf.gz + /build/reproducible-path/htslib-1.20+ds/test/test_view -l 0 -z -m 14 -x /tmp/_mJTUZ8j1l/index.vcf.gz.csi /build/reproducible-path/htslib-1.20+ds/test/index.vcf > /tmp/_mJTUZ8j1l/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_index -c /tmp/ChVegwtDTp/index.vcf.gz + /build/reproducible-path/htslib-1.20+ds/test/test_index -c /tmp/_mJTUZ8j1l/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view -l 0 -z -m 0 -x /tmp/ChVegwtDTp/index.vcf.gz.tbi /build/reproducible-path/htslib-1.20+ds/test/index.vcf > /tmp/ChVegwtDTp/index.vcf.gz + /build/reproducible-path/htslib-1.20+ds/test/test_view -l 0 -z -m 0 -x /tmp/_mJTUZ8j1l/index.vcf.gz.tbi /build/reproducible-path/htslib-1.20+ds/test/index.vcf > /tmp/_mJTUZ8j1l/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_index -t /tmp/ChVegwtDTp/index.vcf.gz + /build/reproducible-path/htslib-1.20+ds/test/test_index -t /tmp/_mJTUZ8j1l/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/tabix /tmp/ChVegwtDTp/index.vcf.gz##idx##/tmp/ChVegwtDTp/index.vcf.gz.tbi 1:10000060-10000060 + /build/reproducible-path/htslib-1.20+ds/tabix /tmp/_mJTUZ8j1l/index.vcf.gz##idx##/tmp/_mJTUZ8j1l/index.vcf.gz.tbi 1:10000060-10000060 .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view /tmp/ChVegwtDTp/index2.bam 1:1000000-1000000 + /build/reproducible-path/htslib-1.20+ds/test/test_view /tmp/_mJTUZ8j1l/index2.bam 1:1000000-1000000 .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view /tmp/ChVegwtDTp/index2.bam 1:2000000-2000000 + /build/reproducible-path/htslib-1.20+ds/test/test_view /tmp/_mJTUZ8j1l/index2.bam 1:2000000-2000000 .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view /tmp/ChVegwtDTp/index2.bam 2:1000000-1000000 + /build/reproducible-path/htslib-1.20+ds/test/test_view /tmp/_mJTUZ8j1l/index2.bam 2:1000000-1000000 .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view /tmp/ChVegwtDTp/index2.bam 2:2000000-2000000 + /build/reproducible-path/htslib-1.20+ds/test/test_view /tmp/_mJTUZ8j1l/index2.bam 2:2000000-2000000 .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view -@4 -l 0 -b -m 14 -x /tmp/ChVegwtDTp/index.bam.csi /build/reproducible-path/htslib-1.20+ds/test/index.sam > /tmp/ChVegwtDTp/index.bam + /build/reproducible-path/htslib-1.20+ds/test/test_view -@4 -l 0 -b -m 14 -x /tmp/_mJTUZ8j1l/index.bam.csi /build/reproducible-path/htslib-1.20+ds/test/index.sam > /tmp/_mJTUZ8j1l/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_index -c /tmp/ChVegwtDTp/index.bam + /build/reproducible-path/htslib-1.20+ds/test/test_index -c /tmp/_mJTUZ8j1l/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view -@4 -l 0 -b -m 0 -x /tmp/ChVegwtDTp/index.bam.bai /build/reproducible-path/htslib-1.20+ds/test/index.sam > /tmp/ChVegwtDTp/index.bam + /build/reproducible-path/htslib-1.20+ds/test/test_view -@4 -l 0 -b -m 0 -x /tmp/_mJTUZ8j1l/index.bam.bai /build/reproducible-path/htslib-1.20+ds/test/index.sam > /tmp/_mJTUZ8j1l/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_index -b /tmp/ChVegwtDTp/index.bam + /build/reproducible-path/htslib-1.20+ds/test/test_index -b /tmp/_mJTUZ8j1l/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view -@4 -l 0 -z -m 14 -x /tmp/ChVegwtDTp/index.sam.gz.csi /build/reproducible-path/htslib-1.20+ds/test/index.sam > /tmp/ChVegwtDTp/index.sam.gz + /build/reproducible-path/htslib-1.20+ds/test/test_view -@4 -l 0 -z -m 14 -x /tmp/_mJTUZ8j1l/index.sam.gz.csi /build/reproducible-path/htslib-1.20+ds/test/index.sam > /tmp/_mJTUZ8j1l/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_index -c /tmp/ChVegwtDTp/index.sam.gz + /build/reproducible-path/htslib-1.20+ds/test/test_index -c /tmp/_mJTUZ8j1l/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view -@4 -l 0 -z -m 0 -x /tmp/ChVegwtDTp/index.sam.gz.bai /build/reproducible-path/htslib-1.20+ds/test/index.sam > /tmp/ChVegwtDTp/index.sam.gz + /build/reproducible-path/htslib-1.20+ds/test/test_view -@4 -l 0 -z -m 0 -x /tmp/_mJTUZ8j1l/index.sam.gz.bai /build/reproducible-path/htslib-1.20+ds/test/index.sam > /tmp/_mJTUZ8j1l/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_index -b /tmp/ChVegwtDTp/index.sam.gz + /build/reproducible-path/htslib-1.20+ds/test/test_index -b /tmp/_mJTUZ8j1l/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view -@4 -l 0 -z -m 14 -x /tmp/ChVegwtDTp/index.sam.gz.csi /build/reproducible-path/htslib-1.20+ds/test/index_dos.sam > /tmp/ChVegwtDTp/index.sam.gz + /build/reproducible-path/htslib-1.20+ds/test/test_view -@4 -l 0 -z -m 14 -x /tmp/_mJTUZ8j1l/index.sam.gz.csi /build/reproducible-path/htslib-1.20+ds/test/index_dos.sam > /tmp/_mJTUZ8j1l/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_index -c /tmp/ChVegwtDTp/index.sam.gz + /build/reproducible-path/htslib-1.20+ds/test/test_index -c /tmp/_mJTUZ8j1l/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view -@4 -l 0 -z -m 0 -x /tmp/ChVegwtDTp/index.sam.gz.bai /build/reproducible-path/htslib-1.20+ds/test/index_dos.sam > /tmp/ChVegwtDTp/index.sam.gz + /build/reproducible-path/htslib-1.20+ds/test/test_view -@4 -l 0 -z -m 0 -x /tmp/_mJTUZ8j1l/index.sam.gz.bai /build/reproducible-path/htslib-1.20+ds/test/index_dos.sam > /tmp/_mJTUZ8j1l/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_index -b /tmp/ChVegwtDTp/index.sam.gz + /build/reproducible-path/htslib-1.20+ds/test/test_index -b /tmp/_mJTUZ8j1l/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view -@4 -l 0 -C -x /tmp/ChVegwtDTp/index.cram.crai /build/reproducible-path/htslib-1.20+ds/test/index.sam > /tmp/ChVegwtDTp/index.cram + /build/reproducible-path/htslib-1.20+ds/test/test_view -@4 -l 0 -C -x /tmp/_mJTUZ8j1l/index.cram.crai /build/reproducible-path/htslib-1.20+ds/test/index.sam > /tmp/_mJTUZ8j1l/index.cram .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_index /tmp/ChVegwtDTp/index.cram + /build/reproducible-path/htslib-1.20+ds/test/test_index /tmp/_mJTUZ8j1l/index.cram .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view -@4 -l 0 -b -m 14 -x /tmp/ChVegwtDTp/index.bcf.csi /build/reproducible-path/htslib-1.20+ds/test/index.vcf > /tmp/ChVegwtDTp/index.bcf + /build/reproducible-path/htslib-1.20+ds/test/test_view -@4 -l 0 -b -m 14 -x /tmp/_mJTUZ8j1l/index.bcf.csi /build/reproducible-path/htslib-1.20+ds/test/index.vcf > /tmp/_mJTUZ8j1l/index.bcf .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_index -c /tmp/ChVegwtDTp/index.bcf + /build/reproducible-path/htslib-1.20+ds/test/test_index -c /tmp/_mJTUZ8j1l/index.bcf .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view -@4 -l 0 -z -m 14 -x /tmp/ChVegwtDTp/index.vcf.gz.csi /build/reproducible-path/htslib-1.20+ds/test/index.vcf > /tmp/ChVegwtDTp/index.vcf.gz + /build/reproducible-path/htslib-1.20+ds/test/test_view -@4 -l 0 -z -m 14 -x /tmp/_mJTUZ8j1l/index.vcf.gz.csi /build/reproducible-path/htslib-1.20+ds/test/index.vcf > /tmp/_mJTUZ8j1l/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_index -c /tmp/ChVegwtDTp/index.vcf.gz + /build/reproducible-path/htslib-1.20+ds/test/test_index -c /tmp/_mJTUZ8j1l/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view -@4 -l 0 -z -m 0 -x /tmp/ChVegwtDTp/index.vcf.gz.tbi /build/reproducible-path/htslib-1.20+ds/test/index.vcf > /tmp/ChVegwtDTp/index.vcf.gz + /build/reproducible-path/htslib-1.20+ds/test/test_view -@4 -l 0 -z -m 0 -x /tmp/_mJTUZ8j1l/index.vcf.gz.tbi /build/reproducible-path/htslib-1.20+ds/test/index.vcf > /tmp/_mJTUZ8j1l/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_index -t /tmp/ChVegwtDTp/index.vcf.gz + /build/reproducible-path/htslib-1.20+ds/test/test_index -t /tmp/_mJTUZ8j1l/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/tabix /tmp/ChVegwtDTp/index.vcf.gz##idx##/tmp/ChVegwtDTp/index.vcf.gz.tbi 1:10000060-10000060 + /build/reproducible-path/htslib-1.20+ds/tabix /tmp/_mJTUZ8j1l/index.vcf.gz##idx##/tmp/_mJTUZ8j1l/index.vcf.gz.tbi 1:10000060-10000060 .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view /tmp/ChVegwtDTp/index2.bam 1:1000000-1000000 + /build/reproducible-path/htslib-1.20+ds/test/test_view /tmp/_mJTUZ8j1l/index2.bam 1:1000000-1000000 .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view /tmp/ChVegwtDTp/index2.bam 1:2000000-2000000 + /build/reproducible-path/htslib-1.20+ds/test/test_view /tmp/_mJTUZ8j1l/index2.bam 1:2000000-2000000 .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view /tmp/ChVegwtDTp/index2.bam 2:1000000-1000000 + /build/reproducible-path/htslib-1.20+ds/test/test_view /tmp/_mJTUZ8j1l/index2.bam 2:1000000-1000000 .. ok test_index: - /build/reproducible-path/htslib-1.20+ds/test/test_view /tmp/ChVegwtDTp/index2.bam 2:2000000-2000000 + /build/reproducible-path/htslib-1.20+ds/test/test_view /tmp/_mJTUZ8j1l/index2.bam 2:2000000-2000000 .. ok test_view testing multi-ref CRAM modes: @@ -2485,7 +2521,7 @@ .. ok test_vcf_api: - /build/reproducible-path/htslib-1.20+ds/test/test-vcf-api /tmp/ChVegwtDTp/test-vcf-api.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-vcf-api /tmp/_mJTUZ8j1l/test-vcf-api.bcf .. ok test_bcf2vcf: @@ -2493,7 +2529,7 @@ .. ok test_vcf_sweep: - /build/reproducible-path/htslib-1.20+ds/test/test-vcf-sweep /tmp/ChVegwtDTp/test-vcf-api.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-vcf-sweep /tmp/_mJTUZ8j1l/test-vcf-api.bcf .. ok test_vcf_various: @@ -2521,169 +2557,169 @@ .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr.pl -t /tmp/ChVegwtDTp -s 74452500 + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr.pl -t /tmp/_mJTUZ8j1l -s 74452500 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr.pl -t /tmp/ChVegwtDTp -s 34270147 + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr.pl -t /tmp/_mJTUZ8j1l -s 34270147 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr.pl -t /tmp/ChVegwtDTp -s 11108528 + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr.pl -t /tmp/_mJTUZ8j1l -s 11108528 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr.pl -t /tmp/ChVegwtDTp -s 42233895 + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr.pl -t /tmp/_mJTUZ8j1l -s 42233895 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr.pl -t /tmp/ChVegwtDTp -s 8111117 + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr.pl -t /tmp/_mJTUZ8j1l -s 8111117 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr.pl -t /tmp/ChVegwtDTp -s 85644070 + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr.pl -t /tmp/_mJTUZ8j1l -s 85644070 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr.pl -t /tmp/ChVegwtDTp -s 49879942 + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr.pl -t /tmp/_mJTUZ8j1l -s 49879942 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr.pl -t /tmp/ChVegwtDTp -s 47881429 + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr.pl -t /tmp/_mJTUZ8j1l -s 47881429 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr.pl -t /tmp/ChVegwtDTp -s 69081244 + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr.pl -t /tmp/_mJTUZ8j1l -s 69081244 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr.pl -t /tmp/ChVegwtDTp -s 83459376 + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr.pl -t /tmp/_mJTUZ8j1l -s 83459376 .. ok test_bcf_sr_no_index: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr --no-index -p all --args /build/reproducible-path/htslib-1.20+ds/test/bcf-sr/merge.noidx.a.vcf /build/reproducible-path/htslib-1.20+ds/test/bcf-sr/merge.noidx.b.vcf /build/reproducible-path/htslib-1.20+ds/test/bcf-sr/merge.noidx.c.vcf 2> /tmp/ChVegwtDTp/no_index_1.err + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr --no-index -p all --args /build/reproducible-path/htslib-1.20+ds/test/bcf-sr/merge.noidx.a.vcf /build/reproducible-path/htslib-1.20+ds/test/bcf-sr/merge.noidx.b.vcf /build/reproducible-path/htslib-1.20+ds/test/bcf-sr/merge.noidx.c.vcf 2> /tmp/_mJTUZ8j1l/no_index_1.err .. ok test_bcf_sr_no_index: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr --no-index -p all --args /build/reproducible-path/htslib-1.20+ds/test/bcf-sr/merge.noidx.a.vcf /build/reproducible-path/htslib-1.20+ds/test/bcf-sr/merge.noidx.hdr_order.vcf > /tmp/ChVegwtDTp/no_index_2.out 2> /tmp/ChVegwtDTp/no_index_2.err (expected fail) + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr --no-index -p all --args /build/reproducible-path/htslib-1.20+ds/test/bcf-sr/merge.noidx.a.vcf /build/reproducible-path/htslib-1.20+ds/test/bcf-sr/merge.noidx.hdr_order.vcf > /tmp/_mJTUZ8j1l/no_index_2.out 2> /tmp/_mJTUZ8j1l/no_index_2.err (expected fail) .. ok test_bcf_sr_no_index: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr --no-index -p all --args /build/reproducible-path/htslib-1.20+ds/test/bcf-sr/merge.noidx.a.vcf /build/reproducible-path/htslib-1.20+ds/test/bcf-sr/merge.noidx.rec_order.vcf > /tmp/ChVegwtDTp/no_index_3.out 2> /tmp/ChVegwtDTp/no_index_3.err (expected fail) + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr --no-index -p all --args /build/reproducible-path/htslib-1.20+ds/test/bcf-sr/merge.noidx.a.vcf /build/reproducible-path/htslib-1.20+ds/test/bcf-sr/merge.noidx.rec_order.vcf > /tmp/_mJTUZ8j1l/no_index_3.out 2> /tmp/_mJTUZ8j1l/no_index_3.err (expected fail) .. ok test_bcf_sr_no_index: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr --no-index -p all --args /build/reproducible-path/htslib-1.20+ds/test/bcf-sr/merge.noidx.rec_order.vcf /build/reproducible-path/htslib-1.20+ds/test/bcf-sr/merge.noidx.a.vcf > /tmp/ChVegwtDTp/no_index_4.out 2> /tmp/ChVegwtDTp/no_index_4.err (expected fail) + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr --no-index -p all --args /build/reproducible-path/htslib-1.20+ds/test/bcf-sr/merge.noidx.rec_order.vcf /build/reproducible-path/htslib-1.20+ds/test/bcf-sr/merge.noidx.a.vcf > /tmp/_mJTUZ8j1l/no_index_4.out 2> /tmp/_mJTUZ8j1l/no_index_4.err (expected fail) .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test_view -b -p /tmp/ChVegwtDTp/weird-chr-names.vcf.bcf -x /tmp/ChVegwtDTp/weird-chr-names.vcf.bcf.csi /build/reproducible-path/htslib-1.20+ds/test/bcf-sr/weird-chr-names.vcf + /build/reproducible-path/htslib-1.20+ds/test/test_view -b -p /tmp/_mJTUZ8j1l/weird-chr-names.vcf.bcf -x /tmp/_mJTUZ8j1l/weird-chr-names.vcf.bcf.csi /build/reproducible-path/htslib-1.20+ds/test/bcf-sr/weird-chr-names.vcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/ChVegwtDTp/range_test_1.out.vcf -r '1' --args /tmp/ChVegwtDTp/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/_mJTUZ8j1l/range_test_1.out.vcf -r '1' --args /tmp/_mJTUZ8j1l/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/ChVegwtDTp/range_test_2.out.vcf -r '1:1-2' --args /tmp/ChVegwtDTp/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/_mJTUZ8j1l/range_test_2.out.vcf -r '1:1-2' --args /tmp/_mJTUZ8j1l/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/ChVegwtDTp/range_test_3.out.vcf -r '1:1,1:2' --args /tmp/ChVegwtDTp/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/_mJTUZ8j1l/range_test_3.out.vcf -r '1:1,1:2' --args /tmp/_mJTUZ8j1l/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/ChVegwtDTp/range_test_4.out.vcf -r '1:1-1' --args /tmp/ChVegwtDTp/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/_mJTUZ8j1l/range_test_4.out.vcf -r '1:1-1' --args /tmp/_mJTUZ8j1l/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/ChVegwtDTp/range_test_5.out.vcf -r '{1:1}' --args /tmp/ChVegwtDTp/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/_mJTUZ8j1l/range_test_5.out.vcf -r '{1:1}' --args /tmp/_mJTUZ8j1l/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/ChVegwtDTp/range_test_6.out.vcf -r '{1:1}:1-2' --args /tmp/ChVegwtDTp/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/_mJTUZ8j1l/range_test_6.out.vcf -r '{1:1}:1-2' --args /tmp/_mJTUZ8j1l/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/ChVegwtDTp/range_test_7.out.vcf -r '{1:1}:1,{1:1}:2' --args /tmp/ChVegwtDTp/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/_mJTUZ8j1l/range_test_7.out.vcf -r '{1:1}:1,{1:1}:2' --args /tmp/_mJTUZ8j1l/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/ChVegwtDTp/range_test_8.out.vcf -r '{1:1}:1-1' --args /tmp/ChVegwtDTp/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/_mJTUZ8j1l/range_test_8.out.vcf -r '{1:1}:1-1' --args /tmp/_mJTUZ8j1l/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/ChVegwtDTp/range_test_9.out.vcf -r '{1:1-1}' --args /tmp/ChVegwtDTp/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/_mJTUZ8j1l/range_test_9.out.vcf -r '{1:1-1}' --args /tmp/_mJTUZ8j1l/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/ChVegwtDTp/range_test_10.out.vcf -r '{1:1-1}:1-2' --args /tmp/ChVegwtDTp/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/_mJTUZ8j1l/range_test_10.out.vcf -r '{1:1-1}:1-2' --args /tmp/_mJTUZ8j1l/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/ChVegwtDTp/range_test_11.out.vcf -r '{1:1-1}:1,{1:1-1}:2' --args /tmp/ChVegwtDTp/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/_mJTUZ8j1l/range_test_11.out.vcf -r '{1:1-1}:1,{1:1-1}:2' --args /tmp/_mJTUZ8j1l/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/ChVegwtDTp/range_test_12.out.vcf -r '{1:1-1}:1-1' --args /tmp/ChVegwtDTp/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/_mJTUZ8j1l/range_test_12.out.vcf -r '{1:1-1}:1-1' --args /tmp/_mJTUZ8j1l/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/ChVegwtDTp/range_test_13.out.vcf -r '{1:1-1}-2' --args /tmp/ChVegwtDTp/weird-chr-names.vcf.bcf (expected fail) + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/_mJTUZ8j1l/range_test_13.out.vcf -r '{1:1-1}-2' --args /tmp/_mJTUZ8j1l/weird-chr-names.vcf.bcf (expected fail) [E::_regions_init_string] Could not parse the region(s): {1:1-1}-2 Failed to set regions .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/ChVegwtDTp/range_test_14.out.vcf -t '1' --args /tmp/ChVegwtDTp/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/_mJTUZ8j1l/range_test_14.out.vcf -t '1' --args /tmp/_mJTUZ8j1l/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/ChVegwtDTp/range_test_15.out.vcf -t '1:1-2' --args /tmp/ChVegwtDTp/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/_mJTUZ8j1l/range_test_15.out.vcf -t '1:1-2' --args /tmp/_mJTUZ8j1l/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/ChVegwtDTp/range_test_16.out.vcf -t '1:1,1:2' --args /tmp/ChVegwtDTp/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/_mJTUZ8j1l/range_test_16.out.vcf -t '1:1,1:2' --args /tmp/_mJTUZ8j1l/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/ChVegwtDTp/range_test_17.out.vcf -t '1:1-1' --args /tmp/ChVegwtDTp/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/_mJTUZ8j1l/range_test_17.out.vcf -t '1:1-1' --args /tmp/_mJTUZ8j1l/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/ChVegwtDTp/range_test_18.out.vcf -t '{1:1}' --args /tmp/ChVegwtDTp/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/_mJTUZ8j1l/range_test_18.out.vcf -t '{1:1}' --args /tmp/_mJTUZ8j1l/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/ChVegwtDTp/range_test_19.out.vcf -t '{1:1}:1-2' --args /tmp/ChVegwtDTp/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/_mJTUZ8j1l/range_test_19.out.vcf -t '{1:1}:1-2' --args /tmp/_mJTUZ8j1l/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/ChVegwtDTp/range_test_20.out.vcf -t '{1:1}:1,{1:1}:2' --args /tmp/ChVegwtDTp/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/_mJTUZ8j1l/range_test_20.out.vcf -t '{1:1}:1,{1:1}:2' --args /tmp/_mJTUZ8j1l/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/ChVegwtDTp/range_test_21.out.vcf -t '{1:1}:1-1' --args /tmp/ChVegwtDTp/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/_mJTUZ8j1l/range_test_21.out.vcf -t '{1:1}:1-1' --args /tmp/_mJTUZ8j1l/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/ChVegwtDTp/range_test_22.out.vcf -t '{1:1-1}' --args /tmp/ChVegwtDTp/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/_mJTUZ8j1l/range_test_22.out.vcf -t '{1:1-1}' --args /tmp/_mJTUZ8j1l/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/ChVegwtDTp/range_test_23.out.vcf -t '{1:1-1}:1-2' --args /tmp/ChVegwtDTp/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/_mJTUZ8j1l/range_test_23.out.vcf -t '{1:1-1}:1-2' --args /tmp/_mJTUZ8j1l/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/ChVegwtDTp/range_test_24.out.vcf -t '{1:1-1}:1,{1:1-1}:2' --args /tmp/ChVegwtDTp/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/_mJTUZ8j1l/range_test_24.out.vcf -t '{1:1-1}:1,{1:1-1}:2' --args /tmp/_mJTUZ8j1l/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/ChVegwtDTp/range_test_25.out.vcf -t '{1:1-1}:1-1' --args /tmp/ChVegwtDTp/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/_mJTUZ8j1l/range_test_25.out.vcf -t '{1:1-1}:1-1' --args /tmp/_mJTUZ8j1l/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/ChVegwtDTp/range_test_26.out.vcf -t '{1:1-1}-2' --args /tmp/ChVegwtDTp/weird-chr-names.vcf.bcf (expected fail) + /build/reproducible-path/htslib-1.20+ds/test/test-bcf-sr -O vcf -o /tmp/_mJTUZ8j1l/range_test_26.out.vcf -t '{1:1-1}-2' --args /tmp/_mJTUZ8j1l/weird-chr-names.vcf.bcf (expected fail) [E::_regions_init_string] Could not parse the region(s): {1:1-1}-2 Failed to set targets .. ok @@ -2693,15 +2729,15 @@ .. ok test_convert_padded_header: - /build/reproducible-path/htslib-1.20+ds/test/test_view -t ce.fa -C /tmp/ChVegwtDTp/headernul0.bam + /build/reproducible-path/htslib-1.20+ds/test/test_view -t ce.fa -C /tmp/_mJTUZ8j1l/headernul0.bam .. ok test_convert_padded_header: - /build/reproducible-path/htslib-1.20+ds/test/test_view -t ce.fa -C /tmp/ChVegwtDTp/headernul1.bam + /build/reproducible-path/htslib-1.20+ds/test/test_view -t ce.fa -C /tmp/_mJTUZ8j1l/headernul1.bam .. ok test_convert_padded_header: - /build/reproducible-path/htslib-1.20+ds/test/test_view -t ce.fa -C /tmp/ChVegwtDTp/headernul678.bam + /build/reproducible-path/htslib-1.20+ds/test/test_view -t ce.fa -C /tmp/_mJTUZ8j1l/headernul678.bam .. ok test_rebgzip: Alternate zlib/deflate library detected @@ -3080,7 +3116,7 @@ failed .. 0 make[2]: Leaving directory '/build/reproducible-path/htslib-1.20+ds' - rm -fr -- /tmp/dh-xdg-rundir-Zyv7qL9D + rm -fr -- /tmp/dh-xdg-rundir-BcFCPuR4 make[1]: Leaving directory '/build/reproducible-path/htslib-1.20+ds' rm -f debian/libhts-dev.debhelper.log debian/libhts3t64.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_auto_test-indep @@ -3103,15 +3139,15 @@ PACKAGE_VERSION="1.20" \ libdir=/usr/lib/i386-linux-gnu install -m0755 -d /build/reproducible-path/htslib-1.20\+ds/debian/tmp - make -j6 install DESTDIR=/build/reproducible-path/htslib-1.20\+ds/debian/tmp AM_UPDATE_INFO_DIR=no prefix=/usr "CFLAGS=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.20+ds=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" PACKAGE_VERSION=1.20 libdir=/usr/lib/i386-linux-gnu + make -j5 install DESTDIR=/build/reproducible-path/htslib-1.20\+ds/debian/tmp AM_UPDATE_INFO_DIR=no prefix=/usr "CFLAGS=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.20+ds=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" PACKAGE_VERSION=1.20 libdir=/usr/lib/i386-linux-gnu make[2]: Entering directory '/build/reproducible-path/htslib-1.20+ds' mkdir -p -m 755 /build/reproducible-path/htslib-1.20+ds/debian/tmp/usr/bin /build/reproducible-path/htslib-1.20+ds/debian/tmp/usr/include /build/reproducible-path/htslib-1.20+ds/debian/tmp/usr/include/htslib /build/reproducible-path/htslib-1.20+ds/debian/tmp/usr/lib/i386-linux-gnu /build/reproducible-path/htslib-1.20+ds/debian/tmp/usr/share/man/man1 /build/reproducible-path/htslib-1.20+ds/debian/tmp/usr/share/man/man5 /build/reproducible-path/htslib-1.20+ds/debian/tmp/usr/share/man/man7 /build/reproducible-path/htslib-1.20+ds/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig if test -n "/usr/lib/i386-linux-gnu/htslib"; then mkdir -p -m 755 /build/reproducible-path/htslib-1.20+ds/debian/tmp/usr/lib/i386-linux-gnu/htslib; fi install -p -m 644 libhts.so /build/reproducible-path/htslib-1.20+ds/debian/tmp/usr/lib/i386-linux-gnu/libhts.so.1.20 sed -e 's#@-includedir@#/usr/include#g;s#@-libdir@#/usr/lib/i386-linux-gnu#g;s#@-PACKAGE_VERSION@#1.20#g' htslib.pc.tmp > /build/reproducible-path/htslib-1.20+ds/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig/htslib.pc ln -sf libhts.so.1.20 /build/reproducible-path/htslib-1.20+ds/debian/tmp/usr/lib/i386-linux-gnu/libhts.so -ln -sf libhts.so.1.20 /build/reproducible-path/htslib-1.20+ds/debian/tmp/usr/lib/i386-linux-gnu/libhts.so.3 chmod 644 /build/reproducible-path/htslib-1.20+ds/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig/htslib.pc +ln -sf libhts.so.1.20 /build/reproducible-path/htslib-1.20+ds/debian/tmp/usr/lib/i386-linux-gnu/libhts.so.3 install -p annot-tsv bgzip htsfile tabix /build/reproducible-path/htslib-1.20+ds/debian/tmp/usr/bin if test -n "hfile_libcurl.so hfile_gcs.so hfile_s3.so hfile_s3_write.so"; then install -p hfile_libcurl.so hfile_gcs.so hfile_s3.so hfile_s3_write.so /build/reproducible-path/htslib-1.20+ds/debian/tmp/usr/lib/i386-linux-gnu/htslib; fi install -p -m 644 htslib/*.h /build/reproducible-path/htslib-1.20+ds/debian/tmp/usr/include/htslib @@ -3184,40 +3220,40 @@ install -m0755 -d debian/libhts-dev/usr/share/doc/libhts-dev install -p -m0644 debian/.debhelper/generated/libhts-dev/dh_installchangelogs.dch.trimmed debian/libhts-dev/usr/share/doc/libhts-dev/changelog.Debian install -p -m0644 NEWS debian/libhts-dev/usr/share/doc/libhts-dev/changelog - install -m0755 -d debian/libhts3t64/usr/share/doc/libhts3t64 - install -p -m0644 debian/.debhelper/generated/libhts3t64/dh_installchangelogs.dch.trimmed debian/libhts3t64/usr/share/doc/libhts3t64/changelog.Debian - install -p -m0644 NEWS debian/libhts3t64/usr/share/doc/libhts3t64/changelog install -m0755 -d debian/htslib-test/usr/share/doc/htslib-test install -p -m0644 debian/.debhelper/generated/htslib-test/dh_installchangelogs.dch.trimmed debian/htslib-test/usr/share/doc/htslib-test/changelog.Debian install -p -m0644 NEWS debian/htslib-test/usr/share/doc/htslib-test/changelog install -m0755 -d debian/tabix/usr/share/doc/tabix install -p -m0644 debian/.debhelper/generated/tabix/dh_installchangelogs.dch.trimmed debian/tabix/usr/share/doc/tabix/changelog.Debian install -p -m0644 NEWS debian/tabix/usr/share/doc/tabix/changelog + install -m0755 -d debian/libhts3t64/usr/share/doc/libhts3t64 + install -p -m0644 debian/.debhelper/generated/libhts3t64/dh_installchangelogs.dch.trimmed debian/libhts3t64/usr/share/doc/libhts3t64/changelog.Debian + install -p -m0644 NEWS debian/libhts3t64/usr/share/doc/libhts3t64/changelog make[1]: Leaving directory '/build/reproducible-path/htslib-1.20+ds' dh_installman + install -m0755 -d debian/libhts3t64/usr/share/man/man7/ + install -p -m0644 ./htslib-s3-plugin.7 debian/libhts3t64/usr/share/man/man7/htslib-s3-plugin.7 install -m0755 -d debian/tabix/usr/share/man/man1/ install -p -m0644 ./htsfile.1 debian/tabix/usr/share/man/man1/htsfile.1 install -m0755 -d debian/tabix/usr/share/man/man1/ install -p -m0644 ./tabix.1 debian/tabix/usr/share/man/man1/tabix.1 install -m0755 -d debian/tabix/usr/share/man/man1/ install -p -m0644 ./bgzip.1 debian/tabix/usr/share/man/man1/bgzip.1 - install -m0755 -d debian/libhts3t64/usr/share/man/man7/ - install -p -m0644 ./htslib-s3-plugin.7 debian/libhts3t64/usr/share/man/man7/htslib-s3-plugin.7 - man-recode --to-code UTF-8 --suffix .dh-new debian/libhts3t64/usr/share/man/man5/faidx.5 debian/libhts3t64/usr/share/man/man5/sam.5 man-recode --to-code UTF-8 --suffix .dh-new debian/libhts3t64/usr/share/man/man5/vcf.5 debian/libhts3t64/usr/share/man/man7/htslib-s3-plugin.7 man-recode --to-code UTF-8 --suffix .dh-new debian/tabix/usr/share/man/man1/bgzip.1 debian/tabix/usr/share/man/man1/htsfile.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/libhts3t64/usr/share/man/man5/faidx.5 debian/libhts3t64/usr/share/man/man5/sam.5 man-recode --to-code UTF-8 --suffix .dh-new debian/tabix/usr/share/man/man1/tabix.1 mv debian/tabix/usr/share/man/man1/tabix.1.dh-new debian/tabix/usr/share/man/man1/tabix.1 chmod 0644 -- debian/tabix/usr/share/man/man1/tabix.1 mv debian/libhts3t64/usr/share/man/man5/vcf.5.dh-new debian/libhts3t64/usr/share/man/man5/vcf.5 mv debian/libhts3t64/usr/share/man/man7/htslib-s3-plugin.7.dh-new debian/libhts3t64/usr/share/man/man7/htslib-s3-plugin.7 chmod 0644 -- debian/libhts3t64/usr/share/man/man5/vcf.5 debian/libhts3t64/usr/share/man/man7/htslib-s3-plugin.7 - mv debian/libhts3t64/usr/share/man/man5/faidx.5.dh-new debian/libhts3t64/usr/share/man/man5/faidx.5 - mv debian/libhts3t64/usr/share/man/man5/sam.5.dh-new debian/libhts3t64/usr/share/man/man5/sam.5 - chmod 0644 -- debian/libhts3t64/usr/share/man/man5/faidx.5 debian/libhts3t64/usr/share/man/man5/sam.5 mv debian/tabix/usr/share/man/man1/bgzip.1.dh-new debian/tabix/usr/share/man/man1/bgzip.1 mv debian/tabix/usr/share/man/man1/htsfile.1.dh-new debian/tabix/usr/share/man/man1/htsfile.1 chmod 0644 -- debian/tabix/usr/share/man/man1/bgzip.1 debian/tabix/usr/share/man/man1/htsfile.1 + mv debian/libhts3t64/usr/share/man/man5/faidx.5.dh-new debian/libhts3t64/usr/share/man/man5/faidx.5 + mv debian/libhts3t64/usr/share/man/man5/sam.5.dh-new debian/libhts3t64/usr/share/man/man5/sam.5 + chmod 0644 -- debian/libhts3t64/usr/share/man/man5/faidx.5 debian/libhts3t64/usr/share/man/man5/sam.5 dh_lintian install -m0755 -d debian/libhts3t64/usr/share/lintian/overrides install -p -m0644 debian/libhts3t64.lintian-overrides debian/libhts3t64/usr/share/lintian/overrides/libhts3t64 @@ -3238,19 +3274,19 @@ dh_strip_nondeterminism dh_compress cd debian/libhts-dev - cd debian/htslib-test cd debian/libhts3t64 + cd debian/htslib-test cd debian/tabix - chmod a-x usr/share/doc/htslib-test/changelog usr/share/doc/htslib-test/changelog.Debian - chmod a-x usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian - gzip -9nf usr/share/doc/htslib-test/changelog usr/share/doc/htslib-test/changelog.Debian - gzip -9nf usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian - chmod a-x usr/share/doc/libhts3t64/changelog usr/share/doc/libhts3t64/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 usr/share/man/man7/htslib-s3-plugin.7 chmod a-x usr/share/doc/tabix/changelog usr/share/doc/tabix/changelog.Debian usr/share/man/man1/bgzip.1 usr/share/man/man1/htsfile.1 usr/share/man/man1/tabix.1 gzip -9nf usr/share/doc/tabix/changelog usr/share/doc/tabix/changelog.Debian usr/share/man/man1/bgzip.1 usr/share/man/man1/htsfile.1 usr/share/man/man1/tabix.1 - gzip -9nf usr/share/doc/libhts3t64/changelog usr/share/doc/libhts3t64/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 usr/share/man/man7/htslib-s3-plugin.7 cd '/build/reproducible-path/htslib-1.20+ds' + chmod a-x usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian + gzip -9nf usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian + chmod a-x usr/share/doc/libhts3t64/changelog usr/share/doc/libhts3t64/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 usr/share/man/man7/htslib-s3-plugin.7 cd '/build/reproducible-path/htslib-1.20+ds' + chmod a-x usr/share/doc/htslib-test/changelog usr/share/doc/htslib-test/changelog.Debian + gzip -9nf usr/share/doc/libhts3t64/changelog usr/share/doc/libhts3t64/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 usr/share/man/man7/htslib-s3-plugin.7 + gzip -9nf usr/share/doc/htslib-test/changelog usr/share/doc/htslib-test/changelog.Debian cd '/build/reproducible-path/htslib-1.20+ds' cd '/build/reproducible-path/htslib-1.20+ds' rm -f debian/htslib-test.debhelper.log debian/libhts-dev.debhelper.log debian/libhts3t64.debhelper.log debian/tabix.debhelper.log @@ -3260,26 +3296,26 @@ find debian/libhts3t64 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libhts-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/htslib-test ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s - find debian/tabix ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s - find debian/tabix/usr/share/doc -type f -a -true -a ! -regex 'debian/tabix/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/htslib-test/usr/share/doc -type f -a -true -a ! -regex 'debian/htslib-test/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/libhts3t64/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts3t64/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/tabix ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libhts-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 - find debian/tabix/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 + find debian/libhts3t64/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts3t64/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/htslib-test/usr/share/doc -type f -a -true -a ! -regex 'debian/htslib-test/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/tabix/usr/share/doc -type f -a -true -a ! -regex 'debian/tabix/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libhts-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts3t64/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 - find debian/htslib-test/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 + find debian/libhts-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libhts-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libhts3t64/usr/share/man debian/libhts3t64/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/tabix/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/htslib-test/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/htslib-test/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libhts3t64 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/libhts-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/tabix/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 + find debian/htslib-test/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/tabix/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/htslib-test -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/libhts-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/libhts3t64/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w - find debian/libhts-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/tabix -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x + find debian/libhts3t64/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian -name simple_test_driver.sh -exec chmod +x \{\} \; make[1]: Leaving directory '/build/reproducible-path/htslib-1.20+ds' rm -f debian/htslib-test.debhelper.log debian/libhts-dev.debhelper.log debian/libhts3t64.debhelper.log debian/tabix.debhelper.log @@ -3290,10 +3326,10 @@ dh_missing make[1]: Leaving directory '/build/reproducible-path/htslib-1.20+ds' dh_dwz -a - install -m0755 -d debian/tabix/usr/lib/debug/.dwz/i386-linux-gnu - dwz -mdebian/tabix/usr/lib/debug/.dwz/i386-linux-gnu/tabix.debug -M/usr/lib/debug/.dwz/i386-linux-gnu/tabix.debug -- debian/tabix/usr/bin/bgzip debian/tabix/usr/bin/htsfile debian/tabix/usr/bin/tabix install -m0755 -d debian/libhts3t64/usr/lib/debug/.dwz/i386-linux-gnu dwz -mdebian/libhts3t64/usr/lib/debug/.dwz/i386-linux-gnu/libhts3t64.debug -M/usr/lib/debug/.dwz/i386-linux-gnu/libhts3t64.debug -- debian/libhts3t64/usr/lib/i386-linux-gnu/htslib/hfile_gcs.so debian/libhts3t64/usr/lib/i386-linux-gnu/htslib/hfile_libcurl.so debian/libhts3t64/usr/lib/i386-linux-gnu/htslib/hfile_s3.so debian/libhts3t64/usr/lib/i386-linux-gnu/htslib/hfile_s3_write.so debian/libhts3t64/usr/lib/i386-linux-gnu/libhts.so.1.20 + install -m0755 -d debian/tabix/usr/lib/debug/.dwz/i386-linux-gnu + dwz -mdebian/tabix/usr/lib/debug/.dwz/i386-linux-gnu/tabix.debug -M/usr/lib/debug/.dwz/i386-linux-gnu/tabix.debug -- debian/tabix/usr/bin/bgzip debian/tabix/usr/bin/htsfile debian/tabix/usr/bin/tabix dwz: debian/libhts3t64/usr/lib/i386-linux-gnu/libhts.so.1.20: DWARF compression not beneficial - old size 756310 new size 778420 objcopy --compress-debug-sections debian/libhts3t64/usr/lib/debug/.dwz/i386-linux-gnu/libhts3t64.debug chmod 0644 -- debian/libhts3t64/usr/lib/debug/.dwz/i386-linux-gnu/libhts3t64.debug @@ -3304,23 +3340,18 @@ make[1]: Entering directory '/build/reproducible-path/htslib-1.20+ds' # This is apparently important for the interpretation by ldc2 in sambamba dh_strip -Xlibhts.a - install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/8d - objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/tabix debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/8d/5c23262ade40459be19ad267429ac933da8337.debug - install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/ab - objcopy --only-keep-debug --compress-debug-sections debian/libhts3t64/usr/lib/i386-linux-gnu/libhts.so.1.20 debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/ab/67d8a4b3c921d15444e281a38fd798f6dbb43b.debug - chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/8d/5c23262ade40459be19ad267429ac933da8337.debug - strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/tabix - objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/8d/5c23262ade40459be19ad267429ac933da8337.debug debian/tabix/usr/bin/tabix install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/c2 objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/htsfile debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/c2/194f198bb4d603167b6c46ec0f0f70246fec9d.debug + install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/ab + objcopy --only-keep-debug --compress-debug-sections debian/libhts3t64/usr/lib/i386-linux-gnu/libhts.so.1.20 debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/ab/67d8a4b3c921d15444e281a38fd798f6dbb43b.debug + chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/c2/194f198bb4d603167b6c46ec0f0f70246fec9d.debug + strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/htsfile + objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/c2/194f198bb4d603167b6c46ec0f0f70246fec9d.debug debian/tabix/usr/bin/htsfile + install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/8d + objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/tabix debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/8d/5c23262ade40459be19ad267429ac933da8337.debug chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/ab/67d8a4b3c921d15444e281a38fd798f6dbb43b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3t64/usr/lib/i386-linux-gnu/libhts.so.1.20 objcopy --add-gnu-debuglink debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/ab/67d8a4b3c921d15444e281a38fd798f6dbb43b.debug debian/libhts3t64/usr/lib/i386-linux-gnu/libhts.so.1.20 - install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/e7 - objcopy --only-keep-debug --compress-debug-sections debian/libhts3t64/usr/lib/i386-linux-gnu/htslib/hfile_s3.so debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/e7/c1578b38ad559089bb7b197ae8c47b9b163f30.debug - chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/e7/c1578b38ad559089bb7b197ae8c47b9b163f30.debug - strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3t64/usr/lib/i386-linux-gnu/htslib/hfile_s3.so - objcopy --add-gnu-debuglink debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/e7/c1578b38ad559089bb7b197ae8c47b9b163f30.debug debian/libhts3t64/usr/lib/i386-linux-gnu/htslib/hfile_s3.so install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/1d objcopy --only-keep-debug --compress-debug-sections debian/libhts3t64/usr/lib/i386-linux-gnu/htslib/hfile_libcurl.so debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/1d/7709b891a0af121a86839f318932de51b354c6.debug chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/1d/7709b891a0af121a86839f318932de51b354c6.debug @@ -3331,6 +3362,11 @@ chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/6a/b47e50b7aaa538cdd00344b4f0f208d38517f6.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3t64/usr/lib/i386-linux-gnu/htslib/hfile_s3_write.so objcopy --add-gnu-debuglink debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/6a/b47e50b7aaa538cdd00344b4f0f208d38517f6.debug debian/libhts3t64/usr/lib/i386-linux-gnu/htslib/hfile_s3_write.so + install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/e7 + objcopy --only-keep-debug --compress-debug-sections debian/libhts3t64/usr/lib/i386-linux-gnu/htslib/hfile_s3.so debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/e7/c1578b38ad559089bb7b197ae8c47b9b163f30.debug + chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/e7/c1578b38ad559089bb7b197ae8c47b9b163f30.debug + strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3t64/usr/lib/i386-linux-gnu/htslib/hfile_s3.so + objcopy --add-gnu-debuglink debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/e7/c1578b38ad559089bb7b197ae8c47b9b163f30.debug debian/libhts3t64/usr/lib/i386-linux-gnu/htslib/hfile_s3.so install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/5a objcopy --only-keep-debug --compress-debug-sections debian/libhts3t64/usr/lib/i386-linux-gnu/htslib/hfile_gcs.so debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/5a/978015cc8d4df89e1fb24cfb40418d5c261f40.debug chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/5a/978015cc8d4df89e1fb24cfb40418d5c261f40.debug @@ -3339,13 +3375,13 @@ install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/libhts3t64/usr/lib/debug/.dwz/i386-linux-gnu debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/libhts3t64/usr/lib/debug/.dwz - chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/c2/194f198bb4d603167b6c46ec0f0f70246fec9d.debug - strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/htsfile rmdir -p --ignore-fail-on-non-empty debian/libhts3t64/usr/lib/debug - objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/c2/194f198bb4d603167b6c46ec0f0f70246fec9d.debug debian/tabix/usr/bin/htsfile install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/share/doc ln -s libhts3t64 debian/.debhelper/libhts3t64/dbgsym-root/usr/share/doc/libhts3t64-dbgsym install -m0755 -d debian/.debhelper/libhts3t64 + chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/8d/5c23262ade40459be19ad267429ac933da8337.debug + strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/tabix + objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/8d/5c23262ade40459be19ad267429ac933da8337.debug debian/tabix/usr/bin/tabix install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/f0 objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/bgzip debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/f0/02bafa8ee6c3e8a834aa33476ec13a96206b1f.debug chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/f0/02bafa8ee6c3e8a834aa33476ec13a96206b1f.debug @@ -3370,10 +3406,10 @@ rm -f debian/libhts-dev/DEBIAN/shlibs rm -f debian/tabix/DEBIAN/shlibs dh_shlibdeps -a - install -m0755 -d debian/libhts3t64/DEBIAN - dpkg-shlibdeps -Tdebian/libhts3t64.substvars debian/libhts3t64/usr/lib/i386-linux-gnu/libhts.so.1.20 debian/libhts3t64/usr/lib/i386-linux-gnu/htslib/hfile_s3.so debian/libhts3t64/usr/lib/i386-linux-gnu/htslib/hfile_libcurl.so debian/libhts3t64/usr/lib/i386-linux-gnu/htslib/hfile_s3_write.so debian/libhts3t64/usr/lib/i386-linux-gnu/htslib/hfile_gcs.so install -m0755 -d debian/tabix/DEBIAN - dpkg-shlibdeps -Tdebian/tabix.substvars debian/tabix/usr/bin/tabix debian/tabix/usr/bin/htsfile debian/tabix/usr/bin/bgzip + dpkg-shlibdeps -Tdebian/tabix.substvars debian/tabix/usr/bin/htsfile debian/tabix/usr/bin/tabix debian/tabix/usr/bin/bgzip + install -m0755 -d debian/libhts3t64/DEBIAN + dpkg-shlibdeps -Tdebian/libhts3t64.substvars debian/libhts3t64/usr/lib/i386-linux-gnu/libhts.so.1.20 debian/libhts3t64/usr/lib/i386-linux-gnu/htslib/hfile_libcurl.so debian/libhts3t64/usr/lib/i386-linux-gnu/htslib/hfile_s3_write.so debian/libhts3t64/usr/lib/i386-linux-gnu/htslib/hfile_s3.so debian/libhts3t64/usr/lib/i386-linux-gnu/htslib/hfile_gcs.so dh_installdeb install -m0755 -d debian/libhts3t64/DEBIAN install -p -m0644 debian/.debhelper/generated/libhts3t64/triggers debian/libhts3t64/DEBIAN/triggers @@ -3385,59 +3421,59 @@ echo misc:Depends= >> debian/libhts-dev.substvars echo misc:Pre-Depends= >> debian/libhts-dev.substvars dpkg-gencontrol -plibhts-dev -ldebian/changelog -Tdebian/libhts-dev.substvars -cdebian/control -Pdebian/libhts-dev - install -m0755 -d debian/libhts3t64/DEBIAN - echo misc:Depends= >> debian/libhts3t64.substvars - echo misc:Pre-Depends= >> debian/libhts3t64.substvars - install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/DEBIAN - dpkg-gencontrol -plibhts3t64 -ldebian/changelog -Tdebian/libhts3t64.substvars -cdebian/control -Pdebian/.debhelper/libhts3t64/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=libhts3t64-dbgsym "-DDepends=libhts3t64 (= \${binary:Version})" "-DDescription=debug symbols for libhts3t64" "-DBuild-Ids=1d7709b891a0af121a86839f318932de51b354c6 5a978015cc8d4df89e1fb24cfb40418d5c261f40 6ab47e50b7aaa538cdd00344b4f0f208d38517f6 ab67d8a4b3c921d15444e281a38fd798f6dbb43b e7c1578b38ad559089bb7b197ae8c47b9b163f30" -DSection=debug -UReplaces -UBreaks install -m0755 -d debian/tabix/DEBIAN echo misc:Depends= >> debian/tabix.substvars echo misc:Pre-Depends= >> debian/tabix.substvars install -m0755 -d debian/.debhelper/tabix/dbgsym-root/DEBIAN dpkg-gencontrol -ptabix -ldebian/changelog -Tdebian/tabix.substvars -cdebian/control -Pdebian/.debhelper/tabix/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=tabix-dbgsym "-DDepends=tabix (= \${binary:Version})" "-DDescription=debug symbols for tabix" "-DBuild-Ids=8d5c23262ade40459be19ad267429ac933da8337 c2194f198bb4d603167b6c46ec0f0f70246fec9d f002bafa8ee6c3e8a834aa33476ec13a96206b1f" -DSection=debug -UMulti-Arch -UReplaces -UBreaks + install -m0755 -d debian/libhts3t64/DEBIAN + echo misc:Depends= >> debian/libhts3t64.substvars + echo misc:Pre-Depends= >> debian/libhts3t64.substvars + install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/DEBIAN + dpkg-gencontrol -plibhts3t64 -ldebian/changelog -Tdebian/libhts3t64.substvars -cdebian/control -Pdebian/.debhelper/libhts3t64/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=libhts3t64-dbgsym "-DDepends=libhts3t64 (= \${binary:Version})" "-DDescription=debug symbols for libhts3t64" "-DBuild-Ids=1d7709b891a0af121a86839f318932de51b354c6 5a978015cc8d4df89e1fb24cfb40418d5c261f40 6ab47e50b7aaa538cdd00344b4f0f208d38517f6 ab67d8a4b3c921d15444e281a38fd798f6dbb43b e7c1578b38ad559089bb7b197ae8c47b9b163f30" -DSection=debug -UReplaces -UBreaks install -m0755 -d debian/htslib-test/DEBIAN echo misc:Depends= >> debian/htslib-test.substvars echo misc:Pre-Depends= >> debian/htslib-test.substvars dpkg-gencontrol -phtslib-test -ldebian/changelog -Tdebian/htslib-test.substvars -cdebian/control -Pdebian/htslib-test - chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/DEBIAN/control - dpkg-gencontrol -ptabix -ldebian/changelog -Tdebian/tabix.substvars -cdebian/control -Pdebian/tabix + chmod 0644 -- debian/libhts-dev/DEBIAN/control chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibhts3t64 -ldebian/changelog -Tdebian/libhts3t64.substvars -cdebian/control -Pdebian/libhts3t64 - chmod 0644 -- debian/libhts-dev/DEBIAN/control chmod 0644 -- debian/htslib-test/DEBIAN/control - chmod 0644 -- debian/tabix/DEBIAN/control + chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/DEBIAN/control + dpkg-gencontrol -ptabix -ldebian/changelog -Tdebian/tabix.substvars -cdebian/control -Pdebian/tabix chmod 0644 -- debian/libhts3t64/DEBIAN/control + chmod 0644 -- debian/tabix/DEBIAN/control dh_md5sums install -m0755 -d debian/libhts3t64/DEBIAN install -m0755 -d debian/libhts-dev/DEBIAN - install -m0755 -d debian/htslib-test/DEBIAN - cd debian/libhts-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums install -m0755 -d debian/tabix/DEBIAN + install -m0755 -d debian/htslib-test/DEBIAN cd debian/libhts3t64 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums - cd debian/htslib-test >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + cd debian/libhts-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/tabix >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + cd debian/htslib-test >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libhts3t64/DEBIAN/md5sums install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/DEBIAN - cd debian/.debhelper/libhts3t64/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums - chmod 0644 -- debian/libhts-dev/DEBIAN/md5sums - chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/DEBIAN/md5sums - chmod 0644 -- debian/htslib-test/DEBIAN/md5sums chmod 0644 -- debian/tabix/DEBIAN/md5sums install -m0755 -d debian/.debhelper/tabix/dbgsym-root/DEBIAN + cd debian/.debhelper/libhts3t64/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + chmod 0644 -- debian/libhts-dev/DEBIAN/md5sums cd debian/.debhelper/tabix/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + chmod 0644 -- debian/htslib-test/DEBIAN/md5sums + chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/libhts3t64 .. - dpkg-deb --root-owner-group --build debian/.debhelper/libhts3t64/dbgsym-root .. - dpkg-deb --root-owner-group --build debian/libhts-dev .. -dpkg-deb: building package 'libhts-dev' in '../libhts-dev_1.20+ds-2_i386.deb'. - dpkg-deb --root-owner-group --build debian/htslib-test .. - dpkg-deb --root-owner-group --build debian/.debhelper/tabix/dbgsym-root .. dpkg-deb --root-owner-group --build debian/tabix .. + dpkg-deb --root-owner-group --build debian/libhts-dev .. dpkg-deb: building package 'libhts3t64' in '../libhts3t64_1.20+ds-2_i386.deb'. -dpkg-deb: building package 'tabix-dbgsym' in '../tabix-dbgsym_1.20+ds-2_i386.deb'. dpkg-deb: building package 'tabix' in '../tabix_1.20+ds-2_i386.deb'. +dpkg-deb: building package 'libhts-dev' in '../libhts-dev_1.20+ds-2_i386.deb'. + dpkg-deb --root-owner-group --build debian/.debhelper/libhts3t64/dbgsym-root .. dpkg-deb: building package 'libhts3t64-dbgsym' in '../libhts3t64-dbgsym_1.20+ds-2_i386.deb'. + dpkg-deb --root-owner-group --build debian/.debhelper/tabix/dbgsym-root .. +dpkg-deb: building package 'tabix-dbgsym' in '../tabix-dbgsym_1.20+ds-2_i386.deb'. + dpkg-deb --root-owner-group --build debian/htslib-test .. dpkg-deb: building package 'htslib-test' in '../htslib-test_1.20+ds-2_all.deb'. dpkg-genbuildinfo --build=binary -O../htslib_1.20+ds-2_i386.buildinfo dpkg-genchanges --build=binary -O../htslib_1.20+ds-2_i386.changes @@ -3447,12 +3483,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/29481/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/29481/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/6191 and its subdirectories -I: Current time: Sun Dec 7 12:55:22 -12 2025 -I: pbuilder-time-stamp: 1765155322 +I: removing directory /srv/workspace/pbuilder/29481 and its subdirectories +I: Current time: Tue Nov 5 08:34:51 +14 2024 +I: pbuilder-time-stamp: 1730745291