Diff of the two buildlogs: -- --- b1/build.log 2024-10-31 09:16:49.341108637 +0000 +++ b2/build.log 2024-10-31 09:22:49.380326425 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Oct 30 21:10:59 -12 2024 -I: pbuilder-time-stamp: 1730365859 +I: Current time: Thu Dec 4 05:39:51 +14 2025 +I: pbuilder-time-stamp: 1764776391 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -37,53 +37,85 @@ dpkg-source: info: applying ignore-m32-m64.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/19061/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2607/tmp/hooks/D01_modify_environment starting +debug: Running on infom08-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 3 15:40 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2607/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2607/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=5 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='9ebe91e0ee53414a93441daba2797efe' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='19061' - PS1='# ' - PS2='> ' + INVOCATION_ID=853ed4f50db048739403b81d49a3ef03 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2607 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.qyzKE2uX/pbuilderrc_yrAb --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.qyzKE2uX/b1 --logfile b1/build.log genometools_1.6.5+ds-2.2.dsc' - SUDO_GID='111' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.qyzKE2uX/pbuilderrc_vrQh --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.qyzKE2uX/b2 --logfile b2/build.log genometools_1.6.5+ds-2.2.dsc' + SUDO_GID=111 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom07-i386 6.1.0-26-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.112-1 (2024-09-30) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.10.11+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.10.11-1~bpo12+1 (2024-10-03) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/19061/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2607/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -447,7 +479,7 @@ Get: 268 http://deb.debian.org/debian unstable/main i386 texlive-latex-recommended all 2024.20240829-2 [8845 kB] Get: 269 http://deb.debian.org/debian unstable/main i386 texlive-pictures all 2024.20240829-2 [17.0 MB] Get: 270 http://deb.debian.org/debian unstable/main i386 texlive-latex-extra all 2024.20240829-1 [20.9 MB] -Fetched 808 MB in 20s (41.3 MB/s) +Fetched 808 MB in 13s (63.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libfftw3-double3:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19955 files and directories currently installed.) @@ -1322,8 +1354,8 @@ Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' -Local time is now: Thu Oct 31 09:12:21 UTC 2024. -Universal Time is now: Thu Oct 31 09:12:21 UTC 2024. +Local time is now: Wed Dec 3 15:41:21 UTC 2025. +Universal Time is now: Wed Dec 3 15:41:21 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libsysprof-capture-4-dev:i386 (47.0-2) ... @@ -1616,7 +1648,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/genometools-1.6.5+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../genometools_1.6.5+ds-2.2_source.changes +I: user script /srv/workspace/pbuilder/2607/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/2607/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/genometools-1.6.5+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../genometools_1.6.5+ds-2.2_source.changes dpkg-buildpackage: info: source package genometools dpkg-buildpackage: info: source version 1.6.5+ds-2.2 dpkg-buildpackage: info: source distribution unstable @@ -1700,7 +1736,7 @@ cp debian/doc-imgs/*png www/genometools.org/htdocs/images cp www/genometools.org/htdocs/docs.html debian/ faketime -f "`TZ=UTC date -d @1714182112 +'%Y-%m-%d %H:%M:%S'`" dh_auto_build -- verbose=yes useshared=yes x32=no 64bit=no errorcheck=no all docs manuals - make -j6 "INSTALL=install --strip-program=true" verbose=yes useshared=yes x32=no 64bit=no errorcheck=no all docs manuals + make -j5 "INSTALL=install --strip-program=true" verbose=yes useshared=yes x32=no 64bit=no errorcheck=no all docs manuals make[2]: Entering directory '/build/reproducible-path/genometools-1.6.5+ds' echo '[create obj/gt_config.h]' [create obj/gt_config.h] @@ -1708,8 +1744,6 @@ test -d obj/src/core || mkdir -p obj/src/core test -d obj/src/core || mkdir -p obj/src/core test -d obj/src/core || mkdir -p obj/src/core -test -d obj/src/core || mkdir -p obj/src/core -test -d obj/src/core || mkdir -p obj/src/core (echo '#ifndef GT_CONFIG_H' ;\ echo '#define GT_CONFIG_H' ;\ echo '#define GT_CC "'`cc --version | head -n 1`\" ;\ @@ -1718,10 +1752,10 @@ sed -e 's/\([^\]\)"/\1\\"/g' -e 's/^"/\\"/g' -e 's/$/"/' \ -e 's/^/#define GT_CPPFLAGS "/'; \ echo '#define GT_VERSION "'`cat VERSION`\" ) > obj/gt_config.h -cc -c src/core/array.c -o obj/src/core/array.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/alphabet.c -o obj/src/core/alphabet.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/array.c -o obj/src/core/array.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/array2dim.c -o obj/src/core/array2dim.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/array3dim.c -o obj/src/core/array3dim.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/array2dim_sparse.c -o obj/src/core/array2dim_sparse.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cat VERSION | \ sed 's/\([0-9]*\)\.[0-9]*\.[0-9]*/#define GT_MAJOR_VERSION \1/' >> obj/gt_config.h @@ -1731,648 +1765,651 @@ sed 's/[0-9]*\.[0-9]*\.\([0-9]*\)/#define GT_MICRO_VERSION \1/' >> obj/gt_config.h echo '#endif' >> obj/gt_config.h test -d obj/src/core || mkdir -p obj/src/core -cc -c src/core/basename.c -o obj/src/core/basename.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/array3dim.c -o obj/src/core/array3dim.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/array2dim.c -o obj/src/core/array2dim.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/array2dim.o -test -d obj/src/core || mkdir -p obj/src/core -cc -c src/core/bioseq.c -o obj/src/core/bioseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/array3dim.c -o obj/src/core/array3dim.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/array3dim.o cc -c src/core/array2dim_sparse.c -o obj/src/core/array2dim_sparse.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/array2dim_sparse.o test -d obj/src/core || mkdir -p obj/src/core +cc -c src/core/basename.c -o obj/src/core/basename.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/core || mkdir -p obj/src/core +cc -c src/core/bioseq.c -o obj/src/core/bioseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/bioseq_col.c -o obj/src/core/bioseq_col.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/basename.c -o obj/src/core/basename.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/basename.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/bioseq_iterator.c -o obj/src/core/bioseq_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/basename.c -o obj/src/core/basename.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/basename.o +cc -c src/core/bioseq_iterator.c -o obj/src/core/bioseq_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bioseq_iterator.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/bitbuffer.c -o obj/src/core/bitbuffer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/bioseq_iterator.c -o obj/src/core/bioseq_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bioseq_iterator.o +cc -c src/core/bioseq_col.c -o obj/src/core/bioseq_col.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bioseq_col.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/bitpackstringop.c -o obj/src/core/bitpackstringop.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/bitbuffer.c -o obj/src/core/bitbuffer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bitbuffer.o +cc -c src/core/array.c -o obj/src/core/array.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/array.o test -d obj/src/core || mkdir -p obj/src/core -cc -c src/core/bioseq_col.c -o obj/src/core/bioseq_col.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bioseq_col.o cc -c src/core/bitpackstringop16.c -o obj/src/core/bitpackstringop16.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/bitbuffer.c -o obj/src/core/bitbuffer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bitbuffer.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/bitpackstringop32.c -o obj/src/core/bitpackstringop32.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/array.c -o obj/src/core/array.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/array.o +cc -c src/core/alphabet.c -o obj/src/core/alphabet.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/alphabet.o +cc -c src/core/bioseq.c -o obj/src/core/bioseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bioseq.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/bitpackstringop64.c -o obj/src/core/bitpackstringop64.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/bioseq.c -o obj/src/core/bioseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bioseq.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/bitpackstringop8.c -o obj/src/core/bitpackstringop8.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/alphabet.c -o obj/src/core/alphabet.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/alphabet.o +cc -c src/core/bitpackstringop.c -o obj/src/core/bitpackstringop.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bitpackstringop.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/bittab.c -o obj/src/core/bittab.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/bitpackstringop.c -o obj/src/core/bitpackstringop.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bitpackstringop.o +cc -c src/core/bitpackstringop16.c -o obj/src/core/bitpackstringop16.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bitpackstringop16.o +cc -c src/core/bittab.c -o obj/src/core/bittab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bittab.o +cc -c src/core/bitpackstringop32.c -o obj/src/core/bitpackstringop32.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bitpackstringop32.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/bool_matrix.c -o obj/src/core/bool_matrix.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/bool_matrix.c -o obj/src/core/bool_matrix.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bool_matrix.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/bsearch.c -o obj/src/core/bsearch.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/bittab.c -o obj/src/core/bittab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bittab.o -cc -c src/core/bitpackstringop16.c -o obj/src/core/bitpackstringop16.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bitpackstringop16.o -cc -c src/core/bsearch.c -o obj/src/core/bsearch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bsearch.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/byte_popcount.c -o obj/src/core/byte_popcount.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/bitpackstringop32.c -o obj/src/core/bitpackstringop32.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bitpackstringop32.o +cc -c src/core/bitpackstringop64.c -o obj/src/core/bitpackstringop64.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bitpackstringop64.o +cc -c src/core/byte_popcount.c -o obj/src/core/byte_popcount.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/byte_popcount.o +cc -c src/core/bool_matrix.c -o obj/src/core/bool_matrix.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bool_matrix.o +cc -c src/core/bitpackstringop8.c -o obj/src/core/bitpackstringop8.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bitpackstringop8.o test -d obj/src/core || mkdir -p obj/src/core test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/byte_select.c -o obj/src/core/byte_select.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/checkbitpackarray.c -o obj/src/core/checkbitpackarray.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/byte_popcount.c -o obj/src/core/byte_popcount.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/byte_popcount.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/checkbitpackstring-int.c -o obj/src/core/checkbitpackstring-int.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/byte_select.c -o obj/src/core/byte_select.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/byte_select.o -cc -c src/core/bitpackstringop64.c -o obj/src/core/bitpackstringop64.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bitpackstringop64.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/checkbitpackstring.c -o obj/src/core/checkbitpackstring.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/byte_select.c -o obj/src/core/byte_select.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/byte_select.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/checkbitpackstring16.c -o obj/src/core/checkbitpackstring16.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/core || mkdir -p obj/src/core -cc -c src/core/checkbitpackstring32.c -o obj/src/core/checkbitpackstring32.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/bitpackstringop8.c -o obj/src/core/bitpackstringop8.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bitpackstringop8.o +cc -c src/core/bsearch.c -o obj/src/core/bsearch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bsearch.o cc -c src/core/checkbitpackstring.c -o obj/src/core/checkbitpackstring.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/checkbitpackstring.o test -d obj/src/core || mkdir -p obj/src/core +test -d obj/src/core || mkdir -p obj/src/core +cc -c src/core/checkbitpackstring32.c -o obj/src/core/checkbitpackstring32.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/checkbitpackstring64.c -o obj/src/core/checkbitpackstring64.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/checkbitpackarray.c -o obj/src/core/checkbitpackarray.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/checkbitpackarray.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/checkbitpackstring8.c -o obj/src/core/checkbitpackstring8.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/checkbitpackarray.c -o obj/src/core/checkbitpackarray.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/checkbitpackarray.o +cc -c src/core/checkbitpackstring-int.c -o obj/src/core/checkbitpackstring-int.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/checkbitpackstring-int.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/class_alloc.c -o obj/src/core/class_alloc.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/checkbitpackstring64.c -o obj/src/core/checkbitpackstring64.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/checkbitpackstring64.o cc -c src/core/class_alloc.c -o obj/src/core/class_alloc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/class_alloc.o +cc -c src/core/checkbitpackstring32.c -o obj/src/core/checkbitpackstring32.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/checkbitpackstring32.o +cc -c src/core/checkbitpackstring16.c -o obj/src/core/checkbitpackstring16.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/checkbitpackstring16.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/class_alloc_lock.c -o obj/src/core/class_alloc_lock.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/class_alloc_lock.c -o obj/src/core/class_alloc_lock.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/class_alloc_lock.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/codon_iterator.c -o obj/src/core/codon_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/codon_iterator.c -o obj/src/core/codon_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/codon_iterator.o test -d obj/src/core || mkdir -p obj/src/core -cc -c src/core/codon_iterator_encseq.c -o obj/src/core/codon_iterator_encseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/checkbitpackstring-int.c -o obj/src/core/checkbitpackstring-int.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/checkbitpackstring-int.o -cc -c src/core/codon_iterator_encseq.c -o obj/src/core/codon_iterator_encseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/codon_iterator_encseq.o test -d obj/src/core || mkdir -p obj/src/core +cc -c src/core/codon_iterator_encseq.c -o obj/src/core/codon_iterator_encseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/codon_iterator_simple.c -o obj/src/core/codon_iterator_simple.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/checkbitpackstring32.c -o obj/src/core/checkbitpackstring32.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/checkbitpackstring32.o +cc -c src/core/class_alloc_lock.c -o obj/src/core/class_alloc_lock.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/class_alloc_lock.o +cc -c src/core/codon_iterator.c -o obj/src/core/codon_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/codon_iterator.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/colorspace.c -o obj/src/core/colorspace.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/combinatorics.c -o obj/src/core/combinatorics.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/checkbitpackstring64.c -o obj/src/core/checkbitpackstring64.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/checkbitpackstring64.o cc -c src/core/codon_iterator_simple.c -o obj/src/core/codon_iterator_simple.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/codon_iterator_simple.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/compact_ulong_store.c -o obj/src/core/compact_ulong_store.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/checkbitpackstring8.c -o obj/src/core/checkbitpackstring8.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/checkbitpackstring8.o +cc -c src/core/codon_iterator_encseq.c -o obj/src/core/codon_iterator_encseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/codon_iterator_encseq.o +cc -c src/core/colorspace.c -o obj/src/core/colorspace.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/colorspace.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/compat.c -o obj/src/core/compat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/colorspace.c -o obj/src/core/colorspace.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/colorspace.o -cc -c src/core/checkbitpackstring16.c -o obj/src/core/checkbitpackstring16.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/checkbitpackstring16.o test -d obj/src/core || mkdir -p obj/src/core -cc -c src/core/complement.c -o obj/src/core/complement.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/checkbitpackstring8.c -o obj/src/core/checkbitpackstring8.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/checkbitpackstring8.o -cc -c src/core/compat.c -o obj/src/core/compat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/compat.o -cc -c src/core/combinatorics.c -o obj/src/core/combinatorics.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/combinatorics.o test -d obj/src/core || mkdir -p obj/src/core +cc -c src/core/complement.c -o obj/src/core/complement.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/countingsort.c -o obj/src/core/countingsort.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/combinatorics.c -o obj/src/core/combinatorics.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/combinatorics.o +cc -c src/core/compact_ulong_store.c -o obj/src/core/compact_ulong_store.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/compact_ulong_store.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/cstr.c -o obj/src/core/cstr.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/compat.c -o obj/src/core/compat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/compat.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/cstr_array.c -o obj/src/core/cstr_array.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/complement.c -o obj/src/core/complement.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/complement.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/cstr_table.c -o obj/src/core/cstr_table.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/complement.c -o obj/src/core/complement.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/complement.o +cc -c src/core/countingsort.c -o obj/src/core/countingsort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/countingsort.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/csvline_reader.c -o obj/src/core/csvline_reader.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/compact_ulong_store.c -o obj/src/core/compact_ulong_store.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/compact_ulong_store.o -cc -c src/core/countingsort.c -o obj/src/core/countingsort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/countingsort.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/desc_buffer.c -o obj/src/core/desc_buffer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/cstr.c -o obj/src/core/cstr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/cstr.o +cc -c src/core/cstr_array.c -o obj/src/core/cstr_array.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/cstr_array.o +cc -c src/core/cstr_table.c -o obj/src/core/cstr_table.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/cstr_table.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/disc_distri.c -o obj/src/core/disc_distri.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/cstr_array.c -o obj/src/core/cstr_array.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/cstr_array.o -cc -c src/core/cstr.c -o obj/src/core/cstr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/cstr.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/dlist.c -o obj/src/core/dlist.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/dual-pivot-qsort.c -o obj/src/core/dual-pivot-qsort.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/cstr_table.c -o obj/src/core/cstr_table.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/cstr_table.o -test -d obj/src/core || mkdir -p obj/src/core -cc -c src/core/dyn_bittab.c -o obj/src/core/dyn_bittab.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/csvline_reader.c -o obj/src/core/csvline_reader.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/csvline_reader.o -cc -c src/core/disc_distri.c -o obj/src/core/disc_distri.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/disc_distri.o cc -c src/core/desc_buffer.c -o obj/src/core/desc_buffer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/desc_buffer.o test -d obj/src/core || mkdir -p obj/src/core +cc -c src/core/dyn_bittab.c -o obj/src/core/dyn_bittab.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/dynalloc.c -o obj/src/core/dynalloc.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/disc_distri.c -o obj/src/core/disc_distri.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/disc_distri.o +cc -c src/core/dual-pivot-qsort.c -o obj/src/core/dual-pivot-qsort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/dual-pivot-qsort.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/eansi.c -o obj/src/core/eansi.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/dynalloc.c -o obj/src/core/dynalloc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/dynalloc.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/ebzlib.c -o obj/src/core/ebzlib.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/dyn_bittab.c -o obj/src/core/dyn_bittab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/dyn_bittab.o -cc -c src/core/dual-pivot-qsort.c -o obj/src/core/dual-pivot-qsort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/dual-pivot-qsort.o -cc -c src/core/eansi.c -o obj/src/core/eansi.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/eansi.o -cc -c src/core/dynalloc.c -o obj/src/core/dynalloc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/dynalloc.o +cc -c src/core/ebzlib.c -o obj/src/core/ebzlib.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/ebzlib.o test -d obj/src/core || mkdir -p obj/src/core test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/encseq.c -o obj/src/core/encseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/ebzlib.c -o obj/src/core/ebzlib.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/ebzlib.o -cc -c src/core/encseq_access_type.c -o obj/src/core/encseq_access_type.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core +cc -c src/core/eansi.c -o obj/src/core/eansi.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/eansi.o +cc -c src/core/encseq_access_type.c -o obj/src/core/encseq_access_type.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/encseq_col.c -o obj/src/core/encseq_col.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/dlist.c -o obj/src/core/dlist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/dlist.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/encseq_metadata.c -o obj/src/core/encseq_metadata.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/encseq_options.c -o obj/src/core/encseq_options.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/dlist.c -o obj/src/core/dlist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/dlist.o +cc -c src/core/encseq_access_type.c -o obj/src/core/encseq_access_type.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/encseq_access_type.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/encseq_ptr.c -o obj/src/core/encseq_ptr.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/encseq_access_type.c -o obj/src/core/encseq_access_type.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/encseq_access_type.o +cc -c src/core/encseq_ptr.c -o obj/src/core/encseq_ptr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/encseq_ptr.o +cc -c src/core/encseq_metadata.c -o obj/src/core/encseq_metadata.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/encseq_metadata.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/endianess.c -o obj/src/core/endianess.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/endianess.c -o obj/src/core/endianess.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/endianess.o test -d obj/src/core || mkdir -p obj/src/core -cc -c src/core/encseq_ptr.c -o obj/src/core/encseq_ptr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/encseq_ptr.o cc -c src/core/error.c -o obj/src/core/error.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/encseq_options.c -o obj/src/core/encseq_options.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/encseq_options.o +cc -c src/core/endianess.c -o obj/src/core/endianess.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/endianess.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/example.c -o obj/src/core/example.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/encseq_metadata.c -o obj/src/core/encseq_metadata.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/encseq_metadata.o -cc -c src/core/example.c -o obj/src/core/example.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/example.o cc -c src/core/error.c -o obj/src/core/error.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/error.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/example_a.c -o obj/src/core/example_a.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/example.c -o obj/src/core/example.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/example.o test -d obj/src/core || mkdir -p obj/src/core -cc -c src/core/example_b.c -o obj/src/core/example_b.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core +cc -c src/core/example_b.c -o obj/src/core/example_b.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/ezlib.c -o obj/src/core/ezlib.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/example_a.c -o obj/src/core/example_a.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/example_a.o -cc -c src/core/encseq_options.c -o obj/src/core/encseq_options.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/encseq_options.o -cc -c src/core/encseq_col.c -o obj/src/core/encseq_col.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/encseq_col.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/fa.c -o obj/src/core/fa.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/core || mkdir -p obj/src/core +cc -c src/core/ezlib.c -o obj/src/core/ezlib.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/ezlib.o cc -c src/core/example_b.c -o obj/src/core/example_b.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/example_b.o +test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/fasta.c -o obj/src/core/fasta.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/ezlib.c -o obj/src/core/ezlib.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/ezlib.o test -d obj/src/core || mkdir -p obj/src/core +cc -c src/core/encseq_col.c -o obj/src/core/encseq_col.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/encseq_col.o cc -c src/core/fasta_reader.c -o obj/src/core/fasta_reader.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/fasta_reader_fsm.c -o obj/src/core/fasta_reader_fsm.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/fasta.c -o obj/src/core/fasta.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/fasta.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/fasta_reader_rec.c -o obj/src/core/fasta_reader_rec.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/fasta_reader.c -o obj/src/core/fasta_reader.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/fasta_reader.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/fasta_reader_seqit.c -o obj/src/core/fasta_reader_seqit.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/fasta.c -o obj/src/core/fasta.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/fasta.o +cc -c src/core/fasta_reader_rec.c -o obj/src/core/fasta_reader_rec.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/fasta_reader_rec.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/fastq.c -o obj/src/core/fastq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/fasta_reader_fsm.c -o obj/src/core/fasta_reader_fsm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/fasta_reader_fsm.o -cc -c src/core/fasta_reader_rec.c -o obj/src/core/fasta_reader_rec.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/fasta_reader_rec.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/file.c -o obj/src/core/file.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/fastq.c -o obj/src/core/fastq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/fastq.o cc -c src/core/fasta_reader_seqit.c -o obj/src/core/fasta_reader_seqit.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/fasta_reader_seqit.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/fileutils.c -o obj/src/core/fileutils.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/gc_content.c -o obj/src/core/gc_content.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/fastq.c -o obj/src/core/fastq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/fastq.o +cc -c src/core/file.c -o obj/src/core/file.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/file.o +cc -c src/core/gc_content.c -o obj/src/core/gc_content.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/gc_content.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/grep.c -o obj/src/core/grep.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/gc_content.c -o obj/src/core/gc_content.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/gc_content.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/gtdatapath.c -o obj/src/core/gtdatapath.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/fa.c -o obj/src/core/fa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/fa.o +cc -c src/core/fileutils.c -o obj/src/core/fileutils.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/fileutils.o cc -c src/core/gtdatapath.c -o obj/src/core/gtdatapath.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/gtdatapath.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/hashmap.c -o obj/src/core/hashmap.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/grep.c -o obj/src/core/grep.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/grep.o -cc -c src/core/fileutils.c -o obj/src/core/fileutils.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/fileutils.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/hashtable.c -o obj/src/core/hashtable.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/file.c -o obj/src/core/file.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/file.o test -d obj/src/core || mkdir -p obj/src/core +cc -c src/core/grep.c -o obj/src/core/grep.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/grep.o cc -c src/core/init.c -o obj/src/core/init.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/fa.c -o obj/src/core/fa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/fa.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/interval_tree.c -o obj/src/core/interval_tree.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/core || mkdir -p obj/src/core -cc -c src/core/io.c -o obj/src/core/io.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/hashmap.c -o obj/src/core/hashmap.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/hashmap.o cc -c src/core/init.c -o obj/src/core/init.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/init.o test -d obj/src/core || mkdir -p obj/src/core +cc -c src/core/io.c -o obj/src/core/io.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/log.c -o obj/src/core/log.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/log.c -o obj/src/core/log.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/log.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/logger.c -o obj/src/core/logger.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/log.c -o obj/src/core/log.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/log.o +cc -c src/core/io.c -o obj/src/core/io.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/io.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/ma.c -o obj/src/core/ma.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/io.c -o obj/src/core/io.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/io.o +cc -c src/core/hashtable.c -o obj/src/core/hashtable.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/hashtable.o +cc -c src/core/logger.c -o obj/src/core/logger.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/logger.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/mapspec.c -o obj/src/core/mapspec.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/logger.c -o obj/src/core/logger.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/logger.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/mathsupport.c -o obj/src/core/mathsupport.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/ma.c -o obj/src/core/ma.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/ma.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/md5_encoder.c -o obj/src/core/md5_encoder.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/hashtable.c -o obj/src/core/hashtable.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/hashtable.o +cc -c src/core/mathsupport.c -o obj/src/core/mathsupport.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/mathsupport.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/md5_fingerprint.c -o obj/src/core/md5_fingerprint.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/mathsupport.c -o obj/src/core/mathsupport.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/mathsupport.o -cc -c src/core/md5_fingerprint.c -o obj/src/core/md5_fingerprint.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/md5_fingerprint.o +cc -c src/core/interval_tree.c -o obj/src/core/interval_tree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/interval_tree.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/md5_seqid.c -o obj/src/core/md5_seqid.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/md5_fingerprint.c -o obj/src/core/md5_fingerprint.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/md5_fingerprint.o +cc -c src/core/md5_encoder.c -o obj/src/core/md5_encoder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/md5_encoder.o +cc -c src/core/mapspec.c -o obj/src/core/mapspec.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/mapspec.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/md5_tab.c -o obj/src/core/md5_tab.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/md5_seqid.c -o obj/src/core/md5_seqid.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/md5_seqid.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/msort.c -o obj/src/core/msort.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/mapspec.c -o obj/src/core/mapspec.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/mapspec.o +cc -c src/core/md5_seqid.c -o obj/src/core/md5_seqid.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/md5_seqid.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/multithread.c -o obj/src/core/multithread.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/md5_tab.c -o obj/src/core/md5_tab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/md5_tab.o -cc -c src/core/interval_tree.c -o obj/src/core/interval_tree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/interval_tree.o -cc -c src/core/md5_encoder.c -o obj/src/core/md5_encoder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/md5_encoder.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/option.c -o obj/src/core/option.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/core || mkdir -p obj/src/core +cc -c src/core/multithread.c -o obj/src/core/multithread.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/multithread.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/orf.c -o obj/src/core/orf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/output_file.c -o obj/src/core/output_file.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/multithread.c -o obj/src/core/multithread.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/multithread.o +cc -c src/core/md5_tab.c -o obj/src/core/md5_tab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/md5_tab.o test -d obj/src/core || mkdir -p obj/src/core -cc -c src/core/parseutils.c -o obj/src/core/parseutils.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/output_file.c -o obj/src/core/output_file.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/orf.c -o obj/src/core/orf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/orf.o cc -c src/core/output_file.c -o obj/src/core/output_file.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/output_file.o test -d obj/src/core || mkdir -p obj/src/core +cc -c src/core/parseutils.c -o obj/src/core/parseutils.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/password_entry.c -o obj/src/core/password_entry.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/msort.c -o obj/src/core/msort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/msort.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/phase.c -o obj/src/core/phase.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/phase.c -o obj/src/core/phase.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/phase.o cc -c src/core/password_entry.c -o obj/src/core/password_entry.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/password_entry.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/process.c -o obj/src/core/process.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/phase.c -o obj/src/core/phase.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/phase.o +cc -c src/core/process.c -o obj/src/core/process.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/process.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/progressbar.c -o obj/src/core/progressbar.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/process.c -o obj/src/core/process.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/process.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/qsort-ulong.c -o obj/src/core/qsort-ulong.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/parseutils.c -o obj/src/core/parseutils.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/parseutils.o -cc -c src/core/progressbar.c -o obj/src/core/progressbar.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/progressbar.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/qsort_r.c -o obj/src/core/qsort_r.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/progressbar.c -o obj/src/core/progressbar.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/progressbar.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/quality.c -o obj/src/core/quality.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/msort.c -o obj/src/core/msort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/msort.o +cc -c src/core/quality.c -o obj/src/core/quality.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/quality.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/queue.c -o obj/src/core/queue.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/qsort-ulong.c -o obj/src/core/qsort-ulong.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/qsort-ulong.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/radix_sort.c -o obj/src/core/radix_sort.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/quality.c -o obj/src/core/quality.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/quality.o +cc -c src/core/qsort_r.c -o obj/src/core/qsort_r.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/qsort_r.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/range.c -o obj/src/core/range.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/qsort_r.c -o obj/src/core/qsort_r.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/qsort_r.o +cc -c src/core/option.c -o obj/src/core/option.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/option.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/readmode.c -o obj/src/core/readmode.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/readmode.c -o obj/src/core/readmode.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/readmode.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/safearith.c -o obj/src/core/safearith.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/queue.c -o obj/src/core/queue.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/queue.o +cc -c src/core/safearith.c -o obj/src/core/safearith.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/safearith.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/score_function.c -o obj/src/core/score_function.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/range.c -o obj/src/core/range.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/range.o +cc -c src/core/queue.c -o obj/src/core/queue.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/queue.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/score_matrix.c -o obj/src/core/score_matrix.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/score_function.c -o obj/src/core/score_function.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/score_function.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/seq.c -o obj/src/core/seq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/safearith.c -o obj/src/core/safearith.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/safearith.o +cc -c src/core/seq.c -o obj/src/core/seq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/seq.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/seq_col.c -o obj/src/core/seq_col.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/seq.c -o obj/src/core/seq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/seq.o +cc -c src/core/range.c -o obj/src/core/range.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/range.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/seq_info_cache.c -o obj/src/core/seq_info_cache.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/seq_info_cache.c -o obj/src/core/seq_info_cache.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/seq_info_cache.o cc -c src/core/score_matrix.c -o obj/src/core/score_matrix.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/score_matrix.o cc -c src/core/seq_col.c -o obj/src/core/seq_col.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/seq_col.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/seq_iterator.c -o obj/src/core/seq_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/seq_iterator_fastq.c -o obj/src/core/seq_iterator_fastq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/seq_info_cache.c -o obj/src/core/seq_info_cache.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/seq_info_cache.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/seq_iterator_sequence_buffer.c -o obj/src/core/seq_iterator_sequence_buffer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/seq_iterator.c -o obj/src/core/seq_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/seq_iterator.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/sequence_buffer.c -o obj/src/core/sequence_buffer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/option.c -o obj/src/core/option.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/option.o cc -c src/core/seq_iterator_sequence_buffer.c -o obj/src/core/seq_iterator_sequence_buffer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/seq_iterator_sequence_buffer.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/sequence_buffer_dust.c -o obj/src/core/sequence_buffer_dust.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/seq_iterator_fastq.c -o obj/src/core/seq_iterator_fastq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/seq_iterator_fastq.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/sequence_buffer_embl.c -o obj/src/core/sequence_buffer_embl.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/seq_iterator_fastq.c -o obj/src/core/seq_iterator_fastq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/seq_iterator_fastq.o +cc -c src/core/sequence_buffer.c -o obj/src/core/sequence_buffer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sequence_buffer.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/sequence_buffer_fasta.c -o obj/src/core/sequence_buffer_fasta.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/sequence_buffer.c -o obj/src/core/sequence_buffer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sequence_buffer.o +cc -c src/core/sequence_buffer_embl.c -o obj/src/core/sequence_buffer_embl.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sequence_buffer_embl.o +cc -c src/core/sequence_buffer_dust.c -o obj/src/core/sequence_buffer_dust.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sequence_buffer_dust.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/sequence_buffer_fastq.c -o obj/src/core/sequence_buffer_fastq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/sequence_buffer_fasta.c -o obj/src/core/sequence_buffer_fasta.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sequence_buffer_fasta.o -cc -c src/core/sequence_buffer_dust.c -o obj/src/core/sequence_buffer_dust.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sequence_buffer_dust.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/sequence_buffer_gb.c -o obj/src/core/sequence_buffer_gb.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/sequence_buffer_fasta.c -o obj/src/core/sequence_buffer_fasta.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sequence_buffer_fasta.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/sequence_buffer_plain.c -o obj/src/core/sequence_buffer_plain.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/sequence_buffer_embl.c -o obj/src/core/sequence_buffer_embl.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sequence_buffer_embl.o +cc -c src/core/sequence_buffer_plain.c -o obj/src/core/sequence_buffer_plain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sequence_buffer_plain.o +cc -c src/core/sequence_buffer_fastq.c -o obj/src/core/sequence_buffer_fastq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sequence_buffer_fastq.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/showtime.c -o obj/src/core/showtime.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/sequence_buffer_fastq.c -o obj/src/core/sequence_buffer_fastq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sequence_buffer_fastq.o -cc -c src/core/showtime.c -o obj/src/core/showtime.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/showtime.o test -d obj/src/core || mkdir -p obj/src/core +cc -c src/core/sig.c -o obj/src/core/sig.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/showtime.c -o obj/src/core/showtime.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/showtime.o test -d obj/src/core || mkdir -p obj/src/core -cc -c src/core/radix_sort.c -o obj/src/core/radix_sort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/radix_sort.o cc -c src/core/spacepeak.c -o obj/src/core/spacepeak.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/sig.c -o obj/src/core/sig.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/sig.c -o obj/src/core/sig.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sig.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/splitter.c -o obj/src/core/splitter.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/sequence_buffer_plain.c -o obj/src/core/sequence_buffer_plain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sequence_buffer_plain.o +cc -c src/core/radix_sort.c -o obj/src/core/radix_sort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/radix_sort.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/str.c -o obj/src/core/str.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/sig.c -o obj/src/core/sig.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sig.o +cc -c src/core/spacepeak.c -o obj/src/core/spacepeak.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/spacepeak.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/str_array.c -o obj/src/core/str_array.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/spacepeak.c -o obj/src/core/spacepeak.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/spacepeak.o +cc -c src/core/splitter.c -o obj/src/core/splitter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/splitter.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/str_cache.c -o obj/src/core/str_cache.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/str_cache.c -o obj/src/core/str_cache.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/str_cache.o -test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/str_array.c -o obj/src/core/str_array.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/str_array.o +test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/strand.c -o obj/src/core/strand.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/str_cache.c -o obj/src/core/str_cache.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/str_cache.o +cc -c src/core/strand.c -o obj/src/core/strand.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/strand.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/strcmp.c -o obj/src/core/strcmp.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/strand.c -o obj/src/core/strand.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/strand.o -cc -c src/core/strcmp.c -o obj/src/core/strcmp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/strcmp.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/string_distri.c -o obj/src/core/string_distri.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/sequence_buffer_gb.c -o obj/src/core/sequence_buffer_gb.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sequence_buffer_gb.o +cc -c src/core/str.c -o obj/src/core/str.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/str.o test -d obj/src/core || mkdir -p obj/src/core +cc -c src/core/strcmp.c -o obj/src/core/strcmp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/strcmp.o cc -c src/core/symbol.c -o obj/src/core/symbol.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/splitter.c -o obj/src/core/splitter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/splitter.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/thread.c -o obj/src/core/thread.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/symbol.c -o obj/src/core/symbol.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/symbol.o -cc -c src/core/sequence_buffer_gb.c -o obj/src/core/sequence_buffer_gb.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sequence_buffer_gb.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/timer.c -o obj/src/core/timer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/string_distri.c -o obj/src/core/string_distri.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/string_distri.o +cc -c src/core/symbol.c -o obj/src/core/symbol.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/symbol.o +test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/tokenizer.c -o obj/src/core/tokenizer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/str.c -o obj/src/core/str.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/str.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/tool.c -o obj/src/core/tool.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/timer.c -o obj/src/core/timer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/timer.o +cc -c src/core/tool.c -o obj/src/core/tool.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/tool.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/tool_iterator.c -o obj/src/core/tool_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/thread.c -o obj/src/core/thread.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/thread.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/toolbox.c -o obj/src/core/toolbox.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/tool_iterator.c -o obj/src/core/tool_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/tool_iterator.o -cc -c src/core/tool.c -o obj/src/core/tool.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/tool.o -test -d obj/src/core || mkdir -p obj/src/core test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/tooldriver.c -o obj/src/core/tooldriver.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/trans_table.c -o obj/src/core/trans_table.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/tokenizer.c -o obj/src/core/tokenizer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/tokenizer.o +cc -c src/core/toolbox.c -o obj/src/core/toolbox.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/toolbox.o +test -d obj/src/core || mkdir -p obj/src/core +cc -c src/core/trans_table.c -o obj/src/core/trans_table.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/translator.c -o obj/src/core/translator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/timer.c -o obj/src/core/timer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/timer.o cc -c src/core/tooldriver.c -o obj/src/core/tooldriver.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/tooldriver.o -cc -c src/core/toolbox.c -o obj/src/core/toolbox.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/toolbox.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/unit_testing.c -o obj/src/core/unit_testing.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/unit_testing.c -o obj/src/core/unit_testing.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/unit_testing.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/version.c -o obj/src/core/version.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/version.c -o obj/src/core/version.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/version.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/versionfunc.c -o obj/src/core/versionfunc.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/unit_testing.c -o obj/src/core/unit_testing.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/unit_testing.o -cc -c src/core/version.c -o obj/src/core/version.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/version.o cc -c src/core/versionfunc.c -o obj/src/core/versionfunc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/versionfunc.o test -d obj/src/core || mkdir -p obj/src/core -test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/warning.c -o obj/src/core/warning.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/translator.c -o obj/src/core/translator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/translator.o +cc -c src/core/warning.c -o obj/src/core/warning.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/warning.o +test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/xansi.c -o obj/src/core/xansi.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/xbsd.c -o obj/src/core/xbsd.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/warning.c -o obj/src/core/warning.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/warning.o -test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/xbsd.c -o obj/src/core/xbsd.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/xbsd.o +test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/xbzlib.c -o obj/src/core/xbzlib.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/xansi.c -o obj/src/core/xansi.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/xansi.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/xposix.c -o obj/src/core/xposix.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/translator.c -o obj/src/core/translator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/translator.o cc -c src/core/xbzlib.c -o obj/src/core/xbzlib.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/xbzlib.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/xzlib.c -o obj/src/core/xzlib.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/xansi.c -o obj/src/core/xansi.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/xansi.o +cc -c src/core/xposix.c -o obj/src/core/xposix.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/xposix.o +cc -c src/core/xzlib.c -o obj/src/core/xzlib.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/xzlib.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/yarandom.c -o obj/src/core/yarandom.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/add_ids_stream.c -o obj/src/extended/add_ids_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/trans_table.c -o obj/src/core/trans_table.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/trans_table.o +cc -c src/extended/add_ids_stream.c -o obj/src/extended/add_ids_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/core/xposix.c -o obj/src/core/xposix.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/xposix.o cc -c src/extended/add_ids_visitor.c -o obj/src/extended/add_ids_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/yarandom.c -o obj/src/core/yarandom.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/yarandom.o -cc -c src/core/xzlib.c -o obj/src/core/xzlib.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/xzlib.o -test -d obj/src/extended || mkdir -p obj/src/extended test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/add_introns_stream.c -o obj/src/extended/add_introns_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/affinealign.c -o obj/src/extended/affinealign.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/add_ids_stream.c -o obj/src/extended/add_ids_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/add_ids_stream.o +cc -c src/extended/add_introns_stream.c -o obj/src/extended/add_introns_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/add_introns_stream.o +test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/affinealign.c -o obj/src/extended/affinealign.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/aligned_segment.c -o obj/src/extended/aligned_segment.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/add_ids_visitor.c -o obj/src/extended/add_ids_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/add_ids_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/aligned_segments_pile.c -o obj/src/extended/aligned_segments_pile.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/add_introns_stream.c -o obj/src/extended/add_introns_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/add_introns_stream.o +cc -c src/extended/aligned_segments_pile.c -o obj/src/extended/aligned_segments_pile.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/aligned_segments_pile.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/alignment.c -o obj/src/extended/alignment.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/add_ids_visitor.c -o obj/src/extended/add_ids_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/add_ids_visitor.o +cc -c src/extended/aligned_segment.c -o obj/src/extended/aligned_segment.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/aligned_segment.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/anno_db_gfflike.c -o obj/src/extended/anno_db_gfflike.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/aligned_segments_pile.c -o obj/src/extended/aligned_segments_pile.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/aligned_segments_pile.o +cc -c src/core/encseq.c -o obj/src/core/encseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/encseq.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/anno_db_schema.c -o obj/src/extended/anno_db_schema.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/anno_db_schema.c -o obj/src/extended/anno_db_schema.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/anno_db_schema.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/array_in_stream.c -o obj/src/extended/array_in_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/aligned_segment.c -o obj/src/extended/aligned_segment.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/aligned_segment.o +cc -c src/extended/array_in_stream.c -o obj/src/extended/array_in_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/array_in_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/array_out_stream.c -o obj/src/extended/array_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/array_in_stream.c -o obj/src/extended/array_in_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/array_in_stream.o +cc -c src/extended/array_out_stream.c -o obj/src/extended/array_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/array_out_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/assembly_stats_calculator.c -o obj/src/extended/assembly_stats_calculator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/array_out_stream.c -o obj/src/extended/array_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/array_out_stream.o +cc -c src/extended/affinealign.c -o obj/src/extended/affinealign.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/affinealign.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/bed_in_stream.c -o obj/src/extended/bed_in_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/affinealign.c -o obj/src/extended/affinealign.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/affinealign.o +cc -c src/extended/assembly_stats_calculator.c -o obj/src/extended/assembly_stats_calculator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/assembly_stats_calculator.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/bed_parser.c -o obj/src/extended/bed_parser.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/bed_in_stream.c -o obj/src/extended/bed_in_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/bed_in_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/bitinstream.c -o obj/src/extended/bitinstream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/assembly_stats_calculator.c -o obj/src/extended/assembly_stats_calculator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/assembly_stats_calculator.o +cc -c src/extended/bitinstream.c -o obj/src/extended/bitinstream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/bitinstream.o +cc -c src/extended/alignment.c -o obj/src/extended/alignment.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/alignment.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/bitoutstream.c -o obj/src/extended/bitoutstream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/alignment.c -o obj/src/extended/alignment.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/alignment.o -cc -c src/extended/bitinstream.c -o obj/src/extended/bitinstream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/bitinstream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/blast_process_call.c -o obj/src/extended/blast_process_call.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/thread.c -o obj/src/core/thread.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/thread.o +cc -c src/extended/bitoutstream.c -o obj/src/extended/bitoutstream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/bitoutstream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/buffer_stream.c -o obj/src/extended/buffer_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/bitoutstream.c -o obj/src/extended/bitoutstream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/bitoutstream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/cds_check_stream.c -o obj/src/extended/cds_check_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/anno_db_gfflike.c -o obj/src/extended/anno_db_gfflike.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/anno_db_gfflike.o cc -c src/extended/buffer_stream.c -o obj/src/extended/buffer_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/buffer_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/cds_check_visitor.c -o obj/src/extended/cds_check_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/cds_check_stream.c -o obj/src/extended/cds_check_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/cds_check_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/cds_stream.c -o obj/src/extended/cds_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/blast_process_call.c -o obj/src/extended/blast_process_call.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/blast_process_call.o +cc -c src/extended/cds_check_stream.c -o obj/src/extended/cds_check_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/cds_check_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/cds_visitor.c -o obj/src/extended/cds_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/blast_process_call.c -o obj/src/extended/blast_process_call.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/blast_process_call.o cc -c src/extended/cds_stream.c -o obj/src/extended/cds_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/cds_stream.o -cc -c src/extended/bed_parser.c -o obj/src/extended/bed_parser.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/bed_parser.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/chain.c -o obj/src/extended/chain.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/anno_db_gfflike.c -o obj/src/extended/anno_db_gfflike.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/anno_db_gfflike.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/check_boundaries_visitor.c -o obj/src/extended/check_boundaries_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/cds_check_visitor.c -o obj/src/extended/cds_check_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/cds_check_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/chseqids_stream.c -o obj/src/extended/chseqids_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/cds_check_visitor.c -o obj/src/extended/cds_check_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/cds_check_visitor.o cc -c src/extended/check_boundaries_visitor.c -o obj/src/extended/check_boundaries_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/check_boundaries_visitor.o cc -c src/extended/chain.c -o obj/src/extended/chain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/chain.o +cc -c src/extended/chseqids_stream.c -o obj/src/extended/chseqids_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/chseqids_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/clustered_set.c -o obj/src/extended/clustered_set.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/clustered_set_uf.c -o obj/src/extended/clustered_set_uf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/coin_hmm.c -o obj/src/extended/coin_hmm.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/bed_parser.c -o obj/src/extended/bed_parser.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/bed_parser.o cc -c src/extended/clustered_set.c -o obj/src/extended/clustered_set.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/clustered_set.o -cc -c src/extended/chseqids_stream.c -o obj/src/extended/chseqids_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/chseqids_stream.o -cc -c src/extended/cds_visitor.c -o obj/src/extended/cds_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/cds_visitor.o -cc -c src/extended/coin_hmm.c -o obj/src/extended/coin_hmm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/coin_hmm.o -test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/collect_ids_visitor.c -o obj/src/extended/collect_ids_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/comment_node.c -o obj/src/extended/comment_node.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/cds_visitor.c -o obj/src/extended/cds_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/cds_visitor.o +cc -c src/extended/collect_ids_visitor.c -o obj/src/extended/collect_ids_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/coin_hmm.c -o obj/src/extended/coin_hmm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/coin_hmm.o +cc -c src/extended/clustered_set_uf.c -o obj/src/extended/clustered_set_uf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/clustered_set_uf.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/compressed_bitsequence.c -o obj/src/extended/compressed_bitsequence.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/condenseq.c -o obj/src/extended/condenseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/collect_ids_visitor.c -o obj/src/extended/collect_ids_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/collect_ids_visitor.o -cc -c src/extended/comment_node.c -o obj/src/extended/comment_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/comment_node.o +test -d obj/src/extended || mkdir -p obj/src/extended test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/condenseq_creator.c -o obj/src/extended/condenseq_creator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/condenseq.c -o obj/src/extended/condenseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/condenseq_search_arguments.c -o obj/src/extended/condenseq_search_arguments.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/clustered_set_uf.c -o obj/src/extended/clustered_set_uf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/clustered_set_uf.o +cc -c src/extended/comment_node.c -o obj/src/extended/comment_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/comment_node.o +cc -c src/extended/condenseq_search_arguments.c -o obj/src/extended/condenseq_search_arguments.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/condenseq_search_arguments.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/consensus_sa.c -o obj/src/extended/consensus_sa.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/condenseq_search_arguments.c -o obj/src/extended/condenseq_search_arguments.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/condenseq_search_arguments.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/csa_gene.c -o obj/src/extended/csa_gene.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/csa_gene.c -o obj/src/extended/csa_gene.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/csa_gene.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/csa_splice_form.c -o obj/src/extended/csa_splice_form.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/csa_splice_form.c -o obj/src/extended/csa_splice_form.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/csa_splice_form.o +cc -c src/extended/consensus_sa.c -o obj/src/extended/consensus_sa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/consensus_sa.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/csa_stream.c -o obj/src/extended/csa_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/consensus_sa.c -o obj/src/extended/consensus_sa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/consensus_sa.o -cc -c src/extended/csa_stream.c -o obj/src/extended/csa_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/csa_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/csa_variable_strands.c -o obj/src/extended/csa_variable_strands.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/csa_stream.c -o obj/src/extended/csa_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/csa_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/csa_visitor.c -o obj/src/extended/csa_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/csa_variable_strands.c -o obj/src/extended/csa_variable_strands.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/csa_variable_strands.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/cstr_iterator.c -o obj/src/extended/cstr_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/cstr_iterator.c -o obj/src/extended/cstr_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/cstr_iterator.o cc -c src/extended/condenseq.c -o obj/src/extended/condenseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/condenseq.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/diagonalbandalign.c -o obj/src/extended/diagonalbandalign.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/compressed_bitsequence.c -o obj/src/extended/compressed_bitsequence.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/compressed_bitsequence.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/diagonalbandalign_affinegapcost.c -o obj/src/extended/diagonalbandalign_affinegapcost.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/csa_visitor.c -o obj/src/extended/csa_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/csa_visitor.o +cc -c src/extended/cstr_iterator.c -o obj/src/extended/cstr_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/cstr_iterator.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/dice_hmm.c -o obj/src/extended/dice_hmm.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/dice_hmm.c -o obj/src/extended/dice_hmm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/dice_hmm.o +cc -c src/extended/condenseq_creator.c -o obj/src/extended/condenseq_creator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/condenseq_creator.o test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/csa_visitor.c -o obj/src/extended/csa_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/csa_visitor.o +cc -c src/extended/dice_hmm.c -o obj/src/extended/dice_hmm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/dice_hmm.o cc -c src/extended/dot_out_stream.c -o obj/src/extended/dot_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/compressed_bitsequence.c -o obj/src/extended/compressed_bitsequence.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/compressed_bitsequence.o test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/dot_visitor.c -o obj/src/extended/dot_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/dot_out_stream.c -o obj/src/extended/dot_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/dot_out_stream.o test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/dot_visitor.c -o obj/src/extended/dot_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/dup_feature_stream.c -o obj/src/extended/dup_feature_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/condenseq_creator.c -o obj/src/extended/condenseq_creator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/condenseq_creator.o +cc -c src/extended/dot_out_stream.c -o obj/src/extended/dot_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/dot_out_stream.o cc -c src/extended/dup_feature_stream.c -o obj/src/extended/dup_feature_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/dup_feature_stream.o -cc -c src/extended/dot_visitor.c -o obj/src/extended/dot_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/dot_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/dup_feature_visitor.c -o obj/src/extended/dup_feature_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/dot_visitor.c -o obj/src/extended/dot_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/dot_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/editscript.c -o obj/src/extended/editscript.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/elias_gamma.c -o obj/src/extended/elias_gamma.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/elias_gamma.c -o obj/src/extended/elias_gamma.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/elias_gamma.o cc -c src/extended/dup_feature_visitor.c -o obj/src/extended/dup_feature_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/dup_feature_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/encdesc.c -o obj/src/extended/encdesc.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/encseq.c -o obj/src/core/encseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/encseq.o -cc -c src/extended/elias_gamma.c -o obj/src/extended/elias_gamma.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/elias_gamma.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/encdesc_header_io.c -o obj/src/extended/encdesc_header_io.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/diagonalbandalign.c -o obj/src/extended/diagonalbandalign.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/diagonalbandalign.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/eof_node.c -o obj/src/extended/eof_node.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/eof_node.c -o obj/src/extended/eof_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/eof_node.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/evaluator.c -o obj/src/extended/evaluator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/diagonalbandalign.c -o obj/src/extended/diagonalbandalign.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/diagonalbandalign.o +cc -c src/extended/encdesc_header_io.c -o obj/src/extended/encdesc_header_io.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/encdesc_header_io.o +cc -c src/extended/evaluator.c -o obj/src/extended/evaluator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/evaluator.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/extract_feature_sequence.c -o obj/src/extended/extract_feature_sequence.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/evaluator.c -o obj/src/extended/evaluator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/evaluator.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/extract_feature_stream.c -o obj/src/extended/extract_feature_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/extract_feature_sequence.c -o obj/src/extended/extract_feature_sequence.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/extract_feature_sequence.o +cc -c src/extended/extract_feature_stream.c -o obj/src/extended/extract_feature_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/extract_feature_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/extract_feature_visitor.c -o obj/src/extended/extract_feature_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/extract_feature_stream.c -o obj/src/extended/extract_feature_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/extract_feature_stream.o +cc -c src/extended/extract_feature_sequence.c -o obj/src/extended/extract_feature_sequence.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/extract_feature_sequence.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/fasta_header_iterator.c -o obj/src/extended/fasta_header_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/encdesc_header_io.c -o obj/src/extended/encdesc_header_io.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/encdesc_header_io.o +cc -c src/extended/extract_feature_visitor.c -o obj/src/extended/extract_feature_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/extract_feature_visitor.o +cc -c src/extended/fasta_header_iterator.c -o obj/src/extended/fasta_header_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/fasta_header_iterator.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/feature_in_stream.c -o obj/src/extended/feature_in_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/fasta_header_iterator.c -o obj/src/extended/fasta_header_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/fasta_header_iterator.o -cc -c src/extended/extract_feature_visitor.c -o obj/src/extended/extract_feature_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/extract_feature_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/feature_index.c -o obj/src/extended/feature_index.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/diagonalbandalign_affinegapcost.c -o obj/src/extended/diagonalbandalign_affinegapcost.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/diagonalbandalign_affinegapcost.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/feature_index_memory.c -o obj/src/extended/feature_index_memory.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/feature_in_stream.c -o obj/src/extended/feature_in_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_in_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/feature_info.c -o obj/src/extended/feature_info.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/feature_in_stream.c -o obj/src/extended/feature_in_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_in_stream.o +cc -c src/extended/feature_index_memory.c -o obj/src/extended/feature_index_memory.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_index_memory.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/feature_node.c -o obj/src/extended/feature_node.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/feature_index.c -o obj/src/extended/feature_index.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_index.o cc -c src/extended/feature_info.c -o obj/src/extended/feature_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_info.o +cc -c src/extended/encdesc.c -o obj/src/extended/encdesc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/encdesc.o test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/feature_node_iterator.c -o obj/src/extended/feature_node_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/feature_index_memory.c -o obj/src/extended/feature_index_memory.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_index_memory.o test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/feature_node_iterator.c -o obj/src/extended/feature_node_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/feature_node_observer.c -o obj/src/extended/feature_node_observer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/feature_node_iterator.c -o obj/src/extended/feature_node_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_node_iterator.o -cc -c src/extended/feature_index.c -o obj/src/extended/feature_index.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_index.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/feature_out_stream.c -o obj/src/extended/feature_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/feature_out_stream.c -o obj/src/extended/feature_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_out_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/feature_stream.c -o obj/src/extended/feature_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/feature_node_observer.c -o obj/src/extended/feature_node_observer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_node_observer.o +cc -c src/extended/feature_stream.c -o obj/src/extended/feature_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_stream.o test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/feature_out_stream.c -o obj/src/extended/feature_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_out_stream.o cc -c src/extended/feature_visitor.c -o obj/src/extended/feature_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/feature_stream.c -o obj/src/extended/feature_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_stream.o +cc -c src/extended/feature_node_iterator.c -o obj/src/extended/feature_node_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_node_iterator.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gap_str.c -o obj/src/extended/gap_str.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended @@ -2381,262 +2418,262 @@ test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gff3_escaping.c -o obj/src/extended/gff3_escaping.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/gap_str.c -o obj/src/extended/gap_str.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gap_str.o +cc -c src/extended/gff3_escaping.c -o obj/src/extended/gff3_escaping.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_escaping.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gff3_in_stream.c -o obj/src/extended/gff3_in_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/encdesc.c -o obj/src/extended/encdesc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/encdesc.o -cc -c src/extended/gff3_escaping.c -o obj/src/extended/gff3_escaping.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_escaping.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gff3_in_stream_plain.c -o obj/src/extended/gff3_in_stream_plain.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/gff3_in_stream.c -o obj/src/extended/gff3_in_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_in_stream.o +cc -c src/extended/editscript.c -o obj/src/extended/editscript.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/editscript.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gff3_linesorted_out_stream.c -o obj/src/extended/gff3_linesorted_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/gff3_in_stream.c -o obj/src/extended/gff3_in_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_in_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gff3_numsorted_out_stream.c -o obj/src/extended/gff3_numsorted_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/genome_node.c -o obj/src/extended/genome_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/genome_node.o -cc -c src/extended/gff3_numsorted_out_stream.c -o obj/src/extended/gff3_numsorted_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_numsorted_out_stream.o -test -d obj/src/extended || mkdir -p obj/src/extended test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gff3_out_stream.c -o obj/src/extended/gff3_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/gff3_output.c -o obj/src/extended/gff3_output.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/gff3_numsorted_out_stream.c -o obj/src/extended/gff3_numsorted_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_numsorted_out_stream.o cc -c src/extended/gff3_in_stream_plain.c -o obj/src/extended/gff3_in_stream_plain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_in_stream_plain.o cc -c src/extended/gff3_linesorted_out_stream.c -o obj/src/extended/gff3_linesorted_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_linesorted_out_stream.o test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/gff3_parser.c -o obj/src/extended/gff3_parser.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/gff3_output.c -o obj/src/extended/gff3_output.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/gff3_out_stream.c -o obj/src/extended/gff3_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_out_stream.o -cc -c src/extended/gff3_output.c -o obj/src/extended/gff3_output.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_output.o +test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/gff3_parser.c -o obj/src/extended/gff3_parser.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gff3_visitor.c -o obj/src/extended/gff3_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/globalchaining.c -o obj/src/extended/globalchaining.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/gff3_output.c -o obj/src/extended/gff3_output.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_output.o +cc -c src/extended/feature_node.c -o obj/src/extended/feature_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_node.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/golomb.c -o obj/src/extended/golomb.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/feature_node.c -o obj/src/extended/feature_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_node.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gtdatahelp.c -o obj/src/extended/gtdatahelp.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/gtdatahelp.c -o obj/src/extended/gtdatahelp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gtdatahelp.o -cc -c src/extended/golomb.c -o obj/src/extended/golomb.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/golomb.o +cc -c src/extended/globalchaining.c -o obj/src/extended/globalchaining.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/globalchaining.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gtf_in_stream.c -o obj/src/extended/gtf_in_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gtf_out_stream.c -o obj/src/extended/gtf_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/gtf_out_stream.c -o obj/src/extended/gtf_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gtf_out_stream.o -cc -c src/extended/globalchaining.c -o obj/src/extended/globalchaining.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/globalchaining.o -cc -c src/extended/editscript.c -o obj/src/extended/editscript.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/editscript.o -test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/golomb.c -o obj/src/extended/golomb.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/golomb.o +cc -c src/extended/gtf_in_stream.c -o obj/src/extended/gtf_in_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gtf_in_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gtf_parser.c -o obj/src/extended/gtf_parser.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/gtf_out_stream.c -o obj/src/extended/gtf_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gtf_out_stream.o +test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gtf_visitor.c -o obj/src/extended/gtf_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/gtf_in_stream.c -o obj/src/extended/gtf_in_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gtf_in_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/hcr.c -o obj/src/extended/hcr.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/gff3_visitor.c -o obj/src/extended/gff3_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/hmm.c -o obj/src/extended/hmm.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/gtf_visitor.c -o obj/src/extended/gtf_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gtf_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/hpol_processor.c -o obj/src/extended/hpol_processor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/gtf_visitor.c -o obj/src/extended/gtf_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gtf_visitor.o +cc -c src/extended/gtf_parser.c -o obj/src/extended/gtf_parser.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gtf_parser.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/huffcode.c -o obj/src/extended/huffcode.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/gtf_parser.c -o obj/src/extended/gtf_parser.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gtf_parser.o +cc -c src/extended/hcr.c -o obj/src/extended/hcr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/hcr.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/id_to_md5_stream.c -o obj/src/extended/id_to_md5_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/id_to_md5_stream.c -o obj/src/extended/id_to_md5_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/id_to_md5_stream.o +cc -c src/extended/huffcode.c -o obj/src/extended/huffcode.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/huffcode.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/id_to_md5_visitor.c -o obj/src/extended/id_to_md5_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/hmm.c -o obj/src/extended/hmm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/hmm.o cc -c src/extended/hpol_processor.c -o obj/src/extended/hpol_processor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/hpol_processor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/inter_feature_stream.c -o obj/src/extended/inter_feature_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/id_to_md5_visitor.c -o obj/src/extended/id_to_md5_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/id_to_md5_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/inter_feature_visitor.c -o obj/src/extended/inter_feature_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/intset.c -o obj/src/extended/intset.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/inter_feature_stream.c -o obj/src/extended/inter_feature_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/inter_feature_stream.o -cc -c src/extended/hcr.c -o obj/src/extended/hcr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/hcr.o +cc -c src/extended/id_to_md5_visitor.c -o obj/src/extended/id_to_md5_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/id_to_md5_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/intset_16.c -o obj/src/extended/intset_16.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/intset_32.c -o obj/src/extended/intset_32.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/huffcode.c -o obj/src/extended/huffcode.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/huffcode.o cc -c src/extended/inter_feature_visitor.c -o obj/src/extended/inter_feature_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/inter_feature_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/intset_8.c -o obj/src/extended/intset_8.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/intset.c -o obj/src/extended/intset.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/intset.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/intset_combined.c -o obj/src/extended/intset_combined.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/intset.c -o obj/src/extended/intset.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/intset.o +cc -c src/extended/intset_16.c -o obj/src/extended/intset_16.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/intset_16.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/io_function_pointers.c -o obj/src/extended/io_function_pointers.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/intset_combined.c -o obj/src/extended/intset_combined.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/intset_combined.o -test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/kmer_database.c -o obj/src/extended/kmer_database.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/io_function_pointers.c -o obj/src/extended/io_function_pointers.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/io_function_pointers.o cc -c src/extended/gff3_parser.c -o obj/src/extended/gff3_parser.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_parser.o +cc -c src/extended/io_function_pointers.c -o obj/src/extended/io_function_pointers.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/io_function_pointers.o test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/linearalign.c -o obj/src/extended/linearalign.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/kmer_database.c -o obj/src/extended/kmer_database.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/intset_combined.c -o obj/src/extended/intset_combined.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/intset_combined.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/linearalign_affinegapcost.c -o obj/src/extended/linearalign_affinegapcost.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/intset_16.c -o obj/src/extended/intset_16.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/intset_16.o test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/linspace_management.c -o obj/src/extended/linspace_management.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/intset_8.c -o obj/src/extended/intset_8.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/intset_8.o +cc -c src/extended/linearalign.c -o obj/src/extended/linearalign.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/intset_32.c -o obj/src/extended/intset_32.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/intset_32.o test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/linspace_management.c -o obj/src/extended/linspace_management.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/intset_8.c -o obj/src/extended/intset_8.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/intset_8.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/load_stream.c -o obj/src/extended/load_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/luahelper.c -o obj/src/extended/luahelper.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/load_stream.c -o obj/src/extended/load_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/load_stream.o cc -c src/extended/linspace_management.c -o obj/src/extended/linspace_management.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/linspace_management.o test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/linearalign.c -o obj/src/extended/linearalign.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/linearalign.o +cc -c src/extended/luahelper.c -o obj/src/extended/luahelper.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/luaserialize.c -o obj/src/extended/luaserialize.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/linearalign.c -o obj/src/extended/linearalign.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/linearalign.o +test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/mapping.c -o obj/src/extended/mapping.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/luahelper.c -o obj/src/extended/luahelper.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/luahelper.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/match.c -o obj/src/extended/match.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/mapping.c -o obj/src/extended/mapping.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/mapping.o +cc -c src/extended/linearalign_affinegapcost.c -o obj/src/extended/linearalign_affinegapcost.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/linearalign_affinegapcost.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/match_blast.c -o obj/src/extended/match_blast.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/linearalign_affinegapcost.c -o obj/src/extended/linearalign_affinegapcost.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/linearalign_affinegapcost.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/match_iterator.c -o obj/src/extended/match_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/match_blast.c -o obj/src/extended/match_blast.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_blast.o -cc -c src/extended/mapping.c -o obj/src/extended/mapping.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/mapping.o cc -c src/extended/match.c -o obj/src/extended/match.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match.o +cc -c src/extended/kmer_database.c -o obj/src/extended/kmer_database.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/kmer_database.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/match_iterator_blast.c -o obj/src/extended/match_iterator_blast.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/match_iterator.c -o obj/src/extended/match_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_iterator.o test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/match_iterator_last.c -o obj/src/extended/match_iterator_last.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/match_blast.c -o obj/src/extended/match_blast.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_blast.o +cc -c src/extended/luaserialize.c -o obj/src/extended/luaserialize.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/luaserialize.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/match_iterator_open.c -o obj/src/extended/match_iterator_open.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/match_iterator_last.c -o obj/src/extended/match_iterator_last.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/match_iterator.c -o obj/src/extended/match_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_iterator.o -cc -c src/extended/kmer_database.c -o obj/src/extended/kmer_database.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/kmer_database.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/match_iterator_sw.c -o obj/src/extended/match_iterator_sw.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/match_last.c -o obj/src/extended/match_last.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/match_iterator_open.c -o obj/src/extended/match_iterator_open.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_iterator_open.o +cc -c src/extended/match_last.c -o obj/src/extended/match_last.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_last.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/match_open.c -o obj/src/extended/match_open.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/luaserialize.c -o obj/src/extended/luaserialize.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/luaserialize.o +cc -c src/extended/match_iterator_blast.c -o obj/src/extended/match_iterator_blast.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_iterator_blast.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/match_sw.c -o obj/src/extended/match_sw.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/match_last.c -o obj/src/extended/match_last.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_last.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/match_visitor.c -o obj/src/extended/match_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/match_iterator_sw.c -o obj/src/extended/match_iterator_sw.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_iterator_sw.o +cc -c src/extended/match_sw.c -o obj/src/extended/match_sw.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_sw.o cc -c src/extended/match_open.c -o obj/src/extended/match_open.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_open.o -cc -c src/extended/match_iterator_blast.c -o obj/src/extended/match_iterator_blast.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_iterator_blast.o +cc -c src/extended/match_visitor.c -o obj/src/extended/match_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/maxcoordvalue.c -o obj/src/extended/maxcoordvalue.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/md5_to_id_stream.c -o obj/src/extended/md5_to_id_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/match_sw.c -o obj/src/extended/match_sw.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_sw.o -test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/md5_to_id_visitor.c -o obj/src/extended/md5_to_id_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/match_iterator_last.c -o obj/src/extended/match_iterator_last.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_iterator_last.o test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/md5set.c -o obj/src/extended/md5set.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/match_visitor.c -o obj/src/extended/match_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_visitor.o cc -c src/extended/md5_to_id_stream.c -o obj/src/extended/md5_to_id_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/md5_to_id_stream.o -cc -c src/extended/match_iterator_last.c -o obj/src/extended/match_iterator_last.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_iterator_last.o test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/md5_to_id_visitor.c -o obj/src/extended/md5_to_id_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/md5set.c -o obj/src/extended/md5set.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/merge_feature_stream.c -o obj/src/extended/merge_feature_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/merge_feature_visitor.c -o obj/src/extended/merge_feature_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/merge_feature_stream.c -o obj/src/extended/merge_feature_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/merge_feature_stream.o +cc -c src/extended/maxcoordvalue.c -o obj/src/extended/maxcoordvalue.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/maxcoordvalue.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/merge_stream.c -o obj/src/extended/merge_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/maxcoordvalue.c -o obj/src/extended/maxcoordvalue.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/maxcoordvalue.o -cc -c src/extended/merge_feature_stream.c -o obj/src/extended/merge_feature_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/merge_feature_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/meta_node.c -o obj/src/extended/meta_node.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/md5_to_id_visitor.c -o obj/src/extended/md5_to_id_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/md5_to_id_visitor.o +cc -c src/extended/md5set.c -o obj/src/extended/md5set.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/md5set.o +cc -c src/extended/merge_feature_visitor.c -o obj/src/extended/merge_feature_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/merge_feature_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/multi_sanitizer_visitor.c -o obj/src/extended/multi_sanitizer_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/meta_node.c -o obj/src/extended/meta_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/meta_node.o cc -c src/extended/multieoplist.c -o obj/src/extended/multieoplist.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/merge_feature_visitor.c -o obj/src/extended/merge_feature_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/merge_feature_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/mutate.c -o obj/src/extended/mutate.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/meta_node.c -o obj/src/extended/meta_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/meta_node.o -cc -c src/extended/merge_stream.c -o obj/src/extended/merge_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/merge_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/node_stream.c -o obj/src/extended/node_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/md5set.c -o obj/src/extended/md5set.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/md5set.o +cc -c src/extended/merge_stream.c -o obj/src/extended/merge_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/merge_stream.o +cc -c src/extended/multi_sanitizer_visitor.c -o obj/src/extended/multi_sanitizer_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/multi_sanitizer_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/node_visitor.c -o obj/src/extended/node_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/obo_parse_tree.c -o obj/src/extended/obo_parse_tree.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/multi_sanitizer_visitor.c -o obj/src/extended/multi_sanitizer_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/multi_sanitizer_visitor.o +cc -c src/extended/node_stream.c -o obj/src/extended/node_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/node_stream.o +cc -c src/extended/mutate.c -o obj/src/extended/mutate.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/mutate.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/obo_stanza.c -o obj/src/extended/obo_stanza.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/mutate.c -o obj/src/extended/mutate.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/mutate.o -cc -c src/extended/node_stream.c -o obj/src/extended/node_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/node_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/orf_finder_stream.c -o obj/src/extended/orf_finder_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/node_visitor.c -o obj/src/extended/node_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/node_visitor.o +cc -c src/extended/obo_stanza.c -o obj/src/extended/obo_stanza.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/obo_stanza.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/orf_finder_visitor.c -o obj/src/extended/orf_finder_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/obo_stanza.c -o obj/src/extended/obo_stanza.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/obo_stanza.o -cc -c src/extended/node_visitor.c -o obj/src/extended/node_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/node_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/orf_finder_stream.c -o obj/src/extended/orf_finder_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/orf_finder_stream.o cc -c src/extended/orf_iterator.c -o obj/src/extended/orf_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/orphanage.c -o obj/src/extended/orphanage.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/orf_finder_stream.c -o obj/src/extended/orf_finder_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/orf_finder_stream.o +cc -c src/extended/obo_parse_tree.c -o obj/src/extended/obo_parse_tree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/obo_parse_tree.o cc -c src/extended/orf_iterator.c -o obj/src/extended/orf_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/orf_iterator.o +cc -c src/extended/orphanage.c -o obj/src/extended/orphanage.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/orphanage.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/permute_words.c -o obj/src/extended/permute_words.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/popcount_tab.c -o obj/src/extended/popcount_tab.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/orf_finder_visitor.c -o obj/src/extended/orf_finder_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/orf_finder_visitor.o -cc -c src/extended/orphanage.c -o obj/src/extended/orphanage.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/orphanage.o -cc -c src/extended/permute_words.c -o obj/src/extended/permute_words.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/permute_words.o +cc -c src/extended/multieoplist.c -o obj/src/extended/multieoplist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/multieoplist.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/priority_queue.c -o obj/src/extended/priority_queue.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended -test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/ranked_list.c -o obj/src/extended/ranked_list.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/permute_words.c -o obj/src/extended/permute_words.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/permute_words.o +cc -c src/extended/orf_finder_visitor.c -o obj/src/extended/orf_finder_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/orf_finder_visitor.o +test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/rbtree.c -o obj/src/extended/rbtree.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/multieoplist.c -o obj/src/extended/multieoplist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/multieoplist.o -cc -c src/extended/obo_parse_tree.c -o obj/src/extended/obo_parse_tree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/obo_parse_tree.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/rcr.c -o obj/src/extended/rcr.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/priority_queue.c -o obj/src/extended/priority_queue.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/priority_queue.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/rdb.c -o obj/src/extended/rdb.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/ranked_list.c -o obj/src/extended/ranked_list.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/ranked_list.o +cc -c src/extended/popcount_tab.c -o obj/src/extended/popcount_tab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/popcount_tab.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/rdb_sqlite.c -o obj/src/extended/rdb_sqlite.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/priority_queue.c -o obj/src/extended/priority_queue.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/priority_queue.o test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/rdb.c -o obj/src/extended/rdb.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/rdb.o cc -c src/extended/rdb_visitor.c -o obj/src/extended/rdb_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/popcount_tab.c -o obj/src/extended/popcount_tab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/popcount_tab.o -test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/region_mapping.c -o obj/src/extended/region_mapping.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/rdb.c -o obj/src/extended/rdb.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/rdb.o +cc -c src/extended/rdb_visitor.c -o obj/src/extended/rdb_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/rdb_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/reconstructalignment.c -o obj/src/extended/reconstructalignment.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/rdb_visitor.c -o obj/src/extended/rdb_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/rdb_visitor.o +test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/region_mapping.c -o obj/src/extended/region_mapping.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/rdb_sqlite.c -o obj/src/extended/rdb_sqlite.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/rdb_sqlite.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/region_node.c -o obj/src/extended/region_node.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/region_node.c -o obj/src/extended/region_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/region_node.o +cc -c src/extended/reconstructalignment.c -o obj/src/extended/reconstructalignment.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/reconstructalignment.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/region_node_builder.c -o obj/src/extended/region_node_builder.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/rdb_sqlite.c -o obj/src/extended/rdb_sqlite.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/rdb_sqlite.o -cc -c src/extended/reconstructalignment.c -o obj/src/extended/reconstructalignment.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/reconstructalignment.o +cc -c src/extended/region_node_builder.c -o obj/src/extended/region_node_builder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/region_node_builder.o +cc -c src/extended/region_node.c -o obj/src/extended/region_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/region_node.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/regioncov_visitor.c -o obj/src/extended/regioncov_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/region_node_builder.c -o obj/src/extended/region_node_builder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/region_node_builder.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/regular_seqid.c -o obj/src/extended/regular_seqid.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/reverse.c -o obj/src/extended/reverse.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/region_mapping.c -o obj/src/extended/region_mapping.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/region_mapping.o -cc -c src/extended/reverse.c -o obj/src/extended/reverse.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/reverse.o cc -c src/extended/regular_seqid.c -o obj/src/extended/regular_seqid.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/regular_seqid.o -test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/rmq.c -o obj/src/extended/rmq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/regioncov_visitor.c -o obj/src/extended/regioncov_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/regioncov_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/reverse.c -o obj/src/extended/reverse.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/rbtree.c -o obj/src/extended/rbtree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/rbtree.o +test -d obj/src/extended || mkdir -p obj/src/extended +test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/rmq.c -o obj/src/extended/rmq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/safe_popen.c -o obj/src/extended/safe_popen.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/reverse.c -o obj/src/extended/reverse.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/reverse.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/sam_alignment.c -o obj/src/extended/sam_alignment.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended @@ -2648,93 +2685,93 @@ test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/samfile_iterator.c -o obj/src/extended/samfile_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/sam_alignment.c -o obj/src/extended/sam_alignment.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sam_alignment.o -cc -c src/extended/samfile_encseq_mapping.c -o obj/src/extended/samfile_encseq_mapping.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/samfile_encseq_mapping.o -cc -c src/extended/samfile_iterator.c -o obj/src/extended/samfile_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/samfile_iterator.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/sampling.c -o obj/src/extended/sampling.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/samfile_encseq_mapping.c -o obj/src/extended/samfile_encseq_mapping.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/samfile_encseq_mapping.o +cc -c src/extended/samfile_iterator.c -o obj/src/extended/samfile_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/samfile_iterator.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/scorehandler.c -o obj/src/extended/scorehandler.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/script_filter.c -o obj/src/extended/script_filter.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/rbtree.c -o obj/src/extended/rbtree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/rbtree.o +cc -c src/extended/rcr.c -o obj/src/extended/rcr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/rcr.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/script_wrapper_stream.c -o obj/src/extended/script_wrapper_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/sampling.c -o obj/src/extended/sampling.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sampling.o +test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/script_wrapper_visitor.c -o obj/src/extended/script_wrapper_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/script_wrapper_stream.c -o obj/src/extended/script_wrapper_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/script_wrapper_stream.o cc -c src/extended/scorehandler.c -o obj/src/extended/scorehandler.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/scorehandler.o +cc -c src/extended/rmq.c -o obj/src/extended/rmq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/rmq.o test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/script_wrapper_visitor.c -o obj/src/extended/script_wrapper_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/select_stream.c -o obj/src/extended/select_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/script_filter.c -o obj/src/extended/script_filter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/script_filter.o -cc -c src/extended/sampling.c -o obj/src/extended/sampling.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sampling.o -test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/select_visitor.c -o obj/src/extended/select_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/rmq.c -o obj/src/extended/rmq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/rmq.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/seqid2file.c -o obj/src/extended/seqid2file.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/script_filter.c -o obj/src/extended/script_filter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/script_filter.o +cc -c src/extended/script_wrapper_visitor.c -o obj/src/extended/script_wrapper_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/script_wrapper_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/seqid2seqnum_mapping.c -o obj/src/extended/seqid2seqnum_mapping.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/select_stream.c -o obj/src/extended/select_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/select_stream.o -cc -c src/extended/script_wrapper_visitor.c -o obj/src/extended/script_wrapper_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/script_wrapper_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/seqpos_classifier.c -o obj/src/extended/seqpos_classifier.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/rcr.c -o obj/src/extended/rcr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/rcr.o +cc -c src/extended/select_stream.c -o obj/src/extended/select_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/select_stream.o +cc -c src/extended/seqid2file.c -o obj/src/extended/seqid2file.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/seqid2file.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/sequence_node.c -o obj/src/extended/sequence_node.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/sequence_node_add_stream.c -o obj/src/extended/sequence_node_add_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/seqid2file.c -o obj/src/extended/seqid2file.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/seqid2file.o +cc -c src/extended/seqpos_classifier.c -o obj/src/extended/seqpos_classifier.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/seqpos_classifier.o +cc -c src/extended/select_visitor.c -o obj/src/extended/select_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/select_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/sequence_node_out_stream.c -o obj/src/extended/sequence_node_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/sequence_node_out_visitor.c -o obj/src/extended/sequence_node_out_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/sequence_node.c -o obj/src/extended/sequence_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sequence_node.o cc -c src/extended/sequence_node_add_stream.c -o obj/src/extended/sequence_node_add_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sequence_node_add_stream.o -cc -c src/extended/seqpos_classifier.c -o obj/src/extended/seqpos_classifier.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/seqpos_classifier.o -cc -c src/extended/sequence_node_out_stream.c -o obj/src/extended/sequence_node_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sequence_node_out_stream.o -test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/seqid2seqnum_mapping.c -o obj/src/extended/seqid2seqnum_mapping.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/seqid2seqnum_mapping.o test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/sequence_node_out_visitor.c -o obj/src/extended/sequence_node_out_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/set_source_visitor.c -o obj/src/extended/set_source_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/shredder.c -o obj/src/extended/shredder.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/seqid2seqnum_mapping.c -o obj/src/extended/seqid2seqnum_mapping.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/seqid2seqnum_mapping.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/snp_annotator_stream.c -o obj/src/extended/snp_annotator_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/sequence_node_out_stream.c -o obj/src/extended/sequence_node_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sequence_node_out_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/snp_annotator_visitor.c -o obj/src/extended/snp_annotator_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/sequence_node_out_visitor.c -o obj/src/extended/sequence_node_out_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sequence_node_out_visitor.o cc -c src/extended/set_source_visitor.c -o obj/src/extended/set_source_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/set_source_visitor.o -cc -c src/extended/select_visitor.c -o obj/src/extended/select_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/select_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/sort_stream.c -o obj/src/extended/sort_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/shredder.c -o obj/src/extended/shredder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/shredder.o cc -c src/extended/spec_results.c -o obj/src/extended/spec_results.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/sequence_node_out_visitor.c -o obj/src/extended/sequence_node_out_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sequence_node_out_visitor.o +cc -c src/extended/shredder.c -o obj/src/extended/shredder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/shredder.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/spec_visitor.c -o obj/src/extended/spec_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/snp_annotator_stream.c -o obj/src/extended/snp_annotator_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/snp_annotator_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/splice_site_info_stream.c -o obj/src/extended/splice_site_info_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/sort_stream.c -o obj/src/extended/sort_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sort_stream.o -cc -c src/extended/snp_annotator_stream.c -o obj/src/extended/snp_annotator_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/snp_annotator_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/splice_site_info_visitor.c -o obj/src/extended/splice_site_info_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/splice_site_info_stream.c -o obj/src/extended/splice_site_info_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/splice_site_info_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/splicedseq.c -o obj/src/extended/splicedseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/snp_annotator_visitor.c -o obj/src/extended/snp_annotator_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/snp_annotator_visitor.o +cc -c src/extended/spec_results.c -o obj/src/extended/spec_results.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/spec_results.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/squarealign.c -o obj/src/extended/squarealign.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/snp_annotator_visitor.c -o obj/src/extended/snp_annotator_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/snp_annotator_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/sspliced_alignment.c -o obj/src/extended/sspliced_alignment.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/spec_results.c -o obj/src/extended/spec_results.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/spec_results.o -cc -c src/extended/splicedseq.c -o obj/src/extended/splicedseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/splicedseq.o cc -c src/extended/splice_site_info_visitor.c -o obj/src/extended/splice_site_info_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/splice_site_info_visitor.o +cc -c src/extended/spec_visitor.c -o obj/src/extended/spec_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/spec_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/sspliced_alignment_parsing.c -o obj/src/extended/sspliced_alignment_parsing.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/stat_stream.c -o obj/src/extended/stat_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/splicedseq.c -o obj/src/extended/splicedseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/splicedseq.o +cc -c src/extended/sspliced_alignment.c -o obj/src/extended/sspliced_alignment.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sspliced_alignment.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/stat_visitor.c -o obj/src/extended/stat_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/sspliced_alignment.c -o obj/src/extended/sspliced_alignment.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sspliced_alignment.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/stream_evaluator.c -o obj/src/extended/stream_evaluator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/stat_stream.c -o obj/src/extended/stat_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/stat_stream.o @@ -2745,503 +2782,503 @@ test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/swalign.c -o obj/src/extended/swalign.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/spec_visitor.c -o obj/src/extended/spec_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/spec_visitor.o cc -c src/extended/tag_value_map.c -o obj/src/extended/tag_value_map.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/targetbest_select_stream.c -o obj/src/extended/targetbest_select_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/stat_visitor.c -o obj/src/extended/stat_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/stat_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/tidy_region_node_stream.c -o obj/src/extended/tidy_region_node_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/targetbest_select_stream.c -o obj/src/extended/targetbest_select_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/targetbest_select_stream.c -o obj/src/extended/targetbest_select_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/targetbest_select_stream.o cc -c src/extended/swalign.c -o obj/src/extended/swalign.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/swalign.o test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/tidy_region_node_stream.c -o obj/src/extended/tidy_region_node_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/tidy_region_node_visitor.c -o obj/src/extended/tidy_region_node_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/string_matching.c -o obj/src/extended/string_matching.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/string_matching.o +cc -c src/extended/tidy_region_node_stream.c -o obj/src/extended/tidy_region_node_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/tidy_region_node_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/tir_stream.c -o obj/src/extended/tir_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/tidy_region_node_stream.c -o obj/src/extended/tidy_region_node_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/tidy_region_node_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/transcript_bittabs.c -o obj/src/extended/transcript_bittabs.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/string_matching.c -o obj/src/extended/string_matching.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/string_matching.o -cc -c src/extended/transcript_bittabs.c -o obj/src/extended/transcript_bittabs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/transcript_bittabs.o cc -c src/extended/tidy_region_node_visitor.c -o obj/src/extended/tidy_region_node_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/tidy_region_node_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/transcript_counts.c -o obj/src/extended/transcript_counts.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/transcript_bittabs.c -o obj/src/extended/transcript_bittabs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/transcript_bittabs.o +cc -c src/extended/tag_value_map.c -o obj/src/extended/tag_value_map.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/tag_value_map.o +cc -c src/extended/transcript_counts.c -o obj/src/extended/transcript_counts.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/transcript_counts.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/transcript_evaluators.c -o obj/src/extended/transcript_evaluators.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/transcript_exons.c -o obj/src/extended/transcript_exons.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/tag_value_map.c -o obj/src/extended/tag_value_map.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/tag_value_map.o -cc -c src/extended/transcript_counts.c -o obj/src/extended/transcript_counts.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/transcript_counts.o -cc -c src/extended/transcript_evaluators.c -o obj/src/extended/transcript_evaluators.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/transcript_evaluators.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/transcript_used_exons.c -o obj/src/extended/transcript_used_exons.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/transcript_exons.c -o obj/src/extended/transcript_exons.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/transcript_exons.o +cc -c src/extended/transcript_evaluators.c -o obj/src/extended/transcript_evaluators.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/transcript_evaluators.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/type_checker.c -o obj/src/extended/type_checker.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended -test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/type_checker_builtin.c -o obj/src/extended/type_checker_builtin.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/type_checker_obo.c -o obj/src/extended/type_checker_obo.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/transcript_used_exons.c -o obj/src/extended/transcript_used_exons.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/transcript_used_exons.o test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/type_graph.c -o obj/src/extended/type_graph.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/type_checker_builtin.c -o obj/src/extended/type_checker_builtin.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/type_checker_builtin.o +cc -c src/extended/type_checker_obo.c -o obj/src/extended/type_checker_obo.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/stream_evaluator.c -o obj/src/extended/stream_evaluator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/stream_evaluator.o cc -c src/extended/type_checker.c -o obj/src/extended/type_checker.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/type_checker.o -cc -c src/extended/type_checker_obo.c -o obj/src/extended/type_checker_obo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/type_checker_obo.o +cc -c src/extended/type_checker_builtin.c -o obj/src/extended/type_checker_builtin.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/type_checker_builtin.o test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/type_node.c -o obj/src/extended/type_node.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/type_graph.c -o obj/src/extended/type_graph.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/typecheck_info.c -o obj/src/extended/typecheck_info.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/uint64hashtable.c -o obj/src/extended/uint64hashtable.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/stream_evaluator.c -o obj/src/extended/stream_evaluator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/stream_evaluator.o +cc -c src/extended/type_node.c -o obj/src/extended/type_node.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/tir_stream.c -o obj/src/extended/tir_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/tir_stream.o +cc -c src/extended/type_checker_obo.c -o obj/src/extended/type_checker_obo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/type_checker_obo.o test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/union_find.c -o obj/src/extended/union_find.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/uint64hashtable.c -o obj/src/extended/uint64hashtable.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/uniq_stream.c -o obj/src/extended/uniq_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/type_graph.c -o obj/src/extended/type_graph.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/type_graph.o +cc -c src/extended/union_find.c -o obj/src/extended/union_find.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/typecheck_info.c -o obj/src/extended/typecheck_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/typecheck_info.o test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/uniq_stream.c -o obj/src/extended/uniq_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/type_node.c -o obj/src/extended/type_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/type_node.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/visitor_stream.c -o obj/src/extended/visitor_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/wtree.c -o obj/src/extended/wtree.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/type_node.c -o obj/src/extended/type_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/type_node.o +cc -c src/extended/type_graph.c -o obj/src/extended/type_graph.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/type_graph.o test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/wtree_encseq.c -o obj/src/extended/wtree_encseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/uniq_stream.c -o obj/src/extended/uniq_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/uniq_stream.o +cc -c src/extended/wtree.c -o obj/src/extended/wtree.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/visitor_stream.c -o obj/src/extended/visitor_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/visitor_stream.o +cc -c src/extended/union_find.c -o obj/src/extended/union_find.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/union_find.o +cc -c src/extended/uniq_stream.c -o obj/src/extended/uniq_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/uniq_stream.o test -d obj/src/extended || mkdir -p obj/src/extended test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/wtree_encseq.c -o obj/src/extended/wtree_encseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/xrf_abbr_entry.c -o obj/src/extended/xrf_abbr_entry.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/uint64hashtable.c -o obj/src/extended/uint64hashtable.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/uint64hashtable.o cc -c src/extended/xrf_abbr_parse_tree.c -o obj/src/extended/xrf_abbr_parse_tree.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/union_find.c -o obj/src/extended/union_find.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/union_find.o cc -c src/extended/wtree.c -o obj/src/extended/wtree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/wtree.o test -d obj/src/extended || mkdir -p obj/src/extended -test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/xrf_checker.c -o obj/src/extended/xrf_checker.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/xrfcheck_info.c -o obj/src/extended/xrfcheck_info.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/uint64hashtable.c -o obj/src/extended/uint64hashtable.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/uint64hashtable.o cc -c src/extended/xrf_abbr_entry.c -o obj/src/extended/xrf_abbr_entry.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/xrf_abbr_entry.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua -test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/alphabet_lua.c -o obj/src/gtlua/alphabet_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/gtlua/annotationsketch_lua.c -o obj/src/gtlua/annotationsketch_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/xrf_checker.c -o obj/src/extended/xrf_checker.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/xrf_checker.o cc -c src/extended/xrfcheck_info.c -o obj/src/extended/xrfcheck_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/xrfcheck_info.o -cc -c src/gtlua/annotationsketch_lua.c -o obj/src/gtlua/annotationsketch_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/annotationsketch_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua -cc -c src/gtlua/bittab_lua.c -o obj/src/gtlua/bittab_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/gtlua/annotationsketch_lua.c -o obj/src/gtlua/annotationsketch_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/gtlua || mkdir -p obj/src/gtlua -cc -c src/gtlua/canvas_lua.c -o obj/src/gtlua/canvas_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/xrf_checker.c -o obj/src/extended/xrf_checker.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/xrf_checker.o +cc -c src/gtlua/bittab_lua.c -o obj/src/gtlua/bittab_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/gtlua/alphabet_lua.c -o obj/src/gtlua/alphabet_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/alphabet_lua.o +cc -c src/gtlua/annotationsketch_lua.c -o obj/src/gtlua/annotationsketch_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/annotationsketch_lua.o +cc -c src/extended/xrf_abbr_parse_tree.c -o obj/src/extended/xrf_abbr_parse_tree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/xrf_abbr_parse_tree.o +test -d obj/src/gtlua || mkdir -p obj/src/gtlua test -d obj/src/gtlua || mkdir -p obj/src/gtlua +cc -c src/extended/wtree_encseq.c -o obj/src/extended/wtree_encseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/wtree_encseq.o +cc -c src/gtlua/canvas_lua.c -o obj/src/gtlua/canvas_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/gtlua/cds_stream_lua.c -o obj/src/gtlua/cds_stream_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/gtlua/bittab_lua.c -o obj/src/gtlua/bittab_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/bittab_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/csa_stream_lua.c -o obj/src/gtlua/csa_stream_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/xrf_abbr_parse_tree.c -o obj/src/extended/xrf_abbr_parse_tree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/xrf_abbr_parse_tree.o -cc -c src/gtlua/bittab_lua.c -o obj/src/gtlua/bittab_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/bittab_lua.o -cc -c src/gtlua/canvas_lua.c -o obj/src/gtlua/canvas_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/canvas_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/diagram_lua.c -o obj/src/gtlua/diagram_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/gtlua/cds_stream_lua.c -o obj/src/gtlua/cds_stream_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/cds_stream_lua.o -cc -c src/gtlua/csa_stream_lua.c -o obj/src/gtlua/csa_stream_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/csa_stream_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/encseq_lua.c -o obj/src/gtlua/encseq_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/wtree_encseq.c -o obj/src/extended/wtree_encseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/wtree_encseq.o +cc -c src/gtlua/cds_stream_lua.c -o obj/src/gtlua/cds_stream_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/cds_stream_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/feature_index_lua.c -o obj/src/gtlua/feature_index_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/gtlua/canvas_lua.c -o obj/src/gtlua/canvas_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/canvas_lua.o +cc -c src/gtlua/csa_stream_lua.c -o obj/src/gtlua/csa_stream_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/csa_stream_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/feature_node_iterator_lua.c -o obj/src/gtlua/feature_node_iterator_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/gtlua/diagram_lua.c -o obj/src/gtlua/diagram_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/diagram_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/feature_stream_lua.c -o obj/src/gtlua/feature_stream_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/gtlua || mkdir -p obj/src/gtlua +cc -c src/gtlua/feature_index_lua.c -o obj/src/gtlua/feature_index_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/feature_index_lua.o cc -c src/gtlua/feature_visitor_lua.c -o obj/src/gtlua/feature_visitor_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/gtlua/diagram_lua.c -o obj/src/gtlua/diagram_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/diagram_lua.o cc -c src/gtlua/feature_node_iterator_lua.c -o obj/src/gtlua/feature_node_iterator_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/feature_node_iterator_lua.o -cc -c src/gtlua/feature_stream_lua.c -o obj/src/gtlua/feature_stream_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/feature_stream_lua.o -cc -c src/gtlua/feature_visitor_lua.c -o obj/src/gtlua/feature_visitor_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/feature_visitor_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/genome_node_lua.c -o obj/src/gtlua/genome_node_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/gtlua || mkdir -p obj/src/gtlua +cc -c src/gtlua/feature_stream_lua.c -o obj/src/gtlua/feature_stream_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/feature_stream_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/genome_stream_lua.c -o obj/src/gtlua/genome_stream_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/gtlua/feature_visitor_lua.c -o obj/src/gtlua/feature_visitor_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/feature_visitor_lua.o +test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/genome_visitor_lua.c -o obj/src/gtlua/genome_visitor_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/gt_lua.c -o obj/src/gtlua/gt_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/gtlua/feature_index_lua.c -o obj/src/gtlua/feature_index_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/feature_index_lua.o +cc -c src/gtlua/genome_visitor_lua.c -o obj/src/gtlua/genome_visitor_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/genome_visitor_lua.o cc -c src/gtlua/gt_lua.c -o obj/src/gtlua/gt_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/gt_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/gtcore_lua.c -o obj/src/gtlua/gtcore_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/gtext_lua.c -o obj/src/gtlua/gtext_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/gtlua/gtcore_lua.c -o obj/src/gtlua/gtcore_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/gtcore_lua.o -cc -c src/gtlua/gtext_lua.c -o obj/src/gtlua/gtext_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/gtext_lua.o -cc -c src/gtlua/genome_stream_lua.c -o obj/src/gtlua/genome_stream_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/genome_stream_lua.o -cc -c src/gtlua/genome_visitor_lua.c -o obj/src/gtlua/genome_visitor_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/genome_visitor_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/image_info_lua.c -o obj/src/gtlua/image_info_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/gtlua/genome_stream_lua.c -o obj/src/gtlua/genome_stream_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/genome_stream_lua.o +cc -c src/gtlua/gtext_lua.c -o obj/src/gtlua/gtext_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/gtext_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/layout_lua.c -o obj/src/gtlua/layout_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/gtlua/image_info_lua.c -o obj/src/gtlua/image_info_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/image_info_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/mathsupport_lua.c -o obj/src/gtlua/mathsupport_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/range_lua.c -o obj/src/gtlua/range_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/gtlua/mathsupport_lua.c -o obj/src/gtlua/mathsupport_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/mathsupport_lua.o -cc -c src/gtlua/layout_lua.c -o obj/src/gtlua/layout_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/layout_lua.o -cc -c src/gtlua/image_info_lua.c -o obj/src/gtlua/image_info_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/image_info_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/region_mapping_lua.c -o obj/src/gtlua/region_mapping_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/gtlua/layout_lua.c -o obj/src/gtlua/layout_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/layout_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/score_matrix_lua.c -o obj/src/gtlua/score_matrix_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/gtlua/region_mapping_lua.c -o obj/src/gtlua/region_mapping_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/region_mapping_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/stream_evaluator_lua.c -o obj/src/gtlua/stream_evaluator_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/gtlua/range_lua.c -o obj/src/gtlua/range_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/range_lua.o +cc -c src/gtlua/encseq_lua.c -o obj/src/gtlua/encseq_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/encseq_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/translate_lua.c -o obj/src/gtlua/translate_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/gtlua/stream_evaluator_lua.c -o obj/src/gtlua/stream_evaluator_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/stream_evaluator_lua.o +cc -c src/gtlua/genome_node_lua.c -o obj/src/gtlua/genome_node_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/genome_node_lua.o +cc -c src/gtlua/range_lua.c -o obj/src/gtlua/range_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/range_lua.o cc -c src/gtlua/score_matrix_lua.c -o obj/src/gtlua/score_matrix_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/score_matrix_lua.o -cc -c src/gtlua/encseq_lua.c -o obj/src/gtlua/encseq_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/encseq_lua.o +cc -c src/gtlua/stream_evaluator_lua.c -o obj/src/gtlua/stream_evaluator_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/stream_evaluator_lua.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/apmeoveridx.c -o obj/src/match/apmeoveridx.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match -cc -c src/match/asqg_writer.c -o obj/src/match/asqg_writer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/gtlua/translate_lua.c -o obj/src/gtlua/translate_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/translate_lua.o -cc -c src/gtlua/region_mapping_lua.c -o obj/src/gtlua/region_mapping_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/region_mapping_lua.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/bare-encseq.c -o obj/src/match/bare-encseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match +cc -c src/match/asqg_writer.c -o obj/src/match/asqg_writer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/bcktab.c -o obj/src/match/bcktab.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/gtlua/genome_node_lua.c -o obj/src/gtlua/genome_node_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/genome_node_lua.o +cc -c src/gtlua/translate_lua.c -o obj/src/gtlua/translate_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/translate_lua.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/cgr_spacedseed.c -o obj/src/match/cgr_spacedseed.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/apmeoveridx.c -o obj/src/match/apmeoveridx.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/apmeoveridx.o +cc -c src/match/asqg_writer.c -o obj/src/match/asqg_writer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/asqg_writer.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/chain2dim.c -o obj/src/match/chain2dim.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/asqg_writer.c -o obj/src/match/asqg_writer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/asqg_writer.o -cc -c src/match/apmeoveridx.c -o obj/src/match/apmeoveridx.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/apmeoveridx.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/chainofin.c -o obj/src/match/chainofin.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/bare-encseq.c -o obj/src/match/bare-encseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/bare-encseq.o +cc -c src/match/cgr_spacedseed.c -o obj/src/match/cgr_spacedseed.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/cgr_spacedseed.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/cutendpfx.c -o obj/src/match/cutendpfx.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/cgr_spacedseed.c -o obj/src/match/cgr_spacedseed.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/cgr_spacedseed.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/dbs_spaced_seeds.c -o obj/src/match/dbs_spaced_seeds.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/bare-encseq.c -o obj/src/match/bare-encseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/bare-encseq.o -cc -c src/match/chainofin.c -o obj/src/match/chainofin.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/chainofin.o +cc -c src/match/cutendpfx.c -o obj/src/match/cutendpfx.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/cutendpfx.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/diagband-struct.c -o obj/src/match/diagband-struct.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/cutendpfx.c -o obj/src/match/cutendpfx.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/cutendpfx.o +cc -c src/match/chainofin.c -o obj/src/match/chainofin.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/chainofin.o +cc -c src/match/dbs_spaced_seeds.c -o obj/src/match/dbs_spaced_seeds.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/dbs_spaced_seeds.o +cc -c src/match/bcktab.c -o obj/src/match/bcktab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/bcktab.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/diagbandseed.c -o obj/src/match/diagbandseed.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/diagband-struct.c -o obj/src/match/diagband-struct.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/diagband-struct.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/dist-short.c -o obj/src/match/dist-short.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/dbs_spaced_seeds.c -o obj/src/match/dbs_spaced_seeds.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/dbs_spaced_seeds.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/echoseq.c -o obj/src/match/echoseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/diagband-struct.c -o obj/src/match/diagband-struct.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/diagband-struct.o test -d obj/src/match || mkdir -p obj/src/match -cc -c src/match/dist-short.c -o obj/src/match/dist-short.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/dist-short.o cc -c src/match/eis-blockcomp-param.c -o obj/src/match/eis-blockcomp-param.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/eis-blockcomp-param.c -o obj/src/match/eis-blockcomp-param.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-blockcomp-param.o cc -c src/match/echoseq.c -o obj/src/match/echoseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/echoseq.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-blockcomp.c -o obj/src/match/eis-blockcomp.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/dist-short.c -o obj/src/match/dist-short.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/dist-short.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-bwtseq-construct.c -o obj/src/match/eis-bwtseq-construct.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/eis-blockcomp-param.c -o obj/src/match/eis-blockcomp-param.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-blockcomp-param.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-bwtseq-context-param.c -o obj/src/match/eis-bwtseq-context-param.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/bcktab.c -o obj/src/match/bcktab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/bcktab.o cc -c src/match/eis-bwtseq-context-param.c -o obj/src/match/eis-bwtseq-context-param.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-bwtseq-context-param.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-bwtseq-context.c -o obj/src/match/eis-bwtseq-context.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/chain2dim.c -o obj/src/match/chain2dim.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/chain2dim.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-bwtseq-extinfo.c -o obj/src/match/eis-bwtseq-extinfo.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/eis-bwtseq-construct.c -o obj/src/match/eis-bwtseq-construct.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-bwtseq-construct.o -cc -c src/match/chain2dim.c -o obj/src/match/chain2dim.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/chain2dim.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-bwtseq-param.c -o obj/src/match/eis-bwtseq-param.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/eis-bwtseq-param.c -o obj/src/match/eis-bwtseq-param.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-bwtseq-param.o +cc -c src/match/eis-bwtseq-context.c -o obj/src/match/eis-bwtseq-context.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-bwtseq-context.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-bwtseq-sass.c -o obj/src/match/eis-bwtseq-sass.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/eis-bwtseq-param.c -o obj/src/match/eis-bwtseq-param.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-bwtseq-param.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-bwtseq.c -o obj/src/match/eis-bwtseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/eis-bwtseq-sass.c -o obj/src/match/eis-bwtseq-sass.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-bwtseq-sass.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-encidxseq-construct.c -o obj/src/match/eis-encidxseq-construct.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/eis-bwtseq-context.c -o obj/src/match/eis-bwtseq-context.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-bwtseq-context.o +cc -c src/match/eis-bwtseq-extinfo.c -o obj/src/match/eis-bwtseq-extinfo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-bwtseq-extinfo.o +cc -c src/match/eis-bwtseq.c -o obj/src/match/eis-bwtseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-bwtseq.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-encidxseq-param.c -o obj/src/match/eis-encidxseq-param.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/eis-encidxseq-construct.c -o obj/src/match/eis-encidxseq-construct.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-encidxseq-construct.o -cc -c src/match/eis-encidxseq-param.c -o obj/src/match/eis-encidxseq-param.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-encidxseq-param.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-encidxseq.c -o obj/src/match/eis-encidxseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/eis-encidxseq-construct.c -o obj/src/match/eis-encidxseq-construct.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-encidxseq-construct.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-mrangealphabet.c -o obj/src/match/eis-mrangealphabet.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/eis-bwtseq-extinfo.c -o obj/src/match/eis-bwtseq-extinfo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-bwtseq-extinfo.o +cc -c src/match/eis-encidxseq-param.c -o obj/src/match/eis-encidxseq-param.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-encidxseq-param.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-sa-common.c -o obj/src/match/eis-sa-common.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/eis-mrangealphabet.c -o obj/src/match/eis-mrangealphabet.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-mrangealphabet.o -cc -c src/match/eis-sa-common.c -o obj/src/match/eis-sa-common.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-sa-common.o -cc -c src/match/eis-encidxseq.c -o obj/src/match/eis-encidxseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-encidxseq.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-seqblocktranslate.c -o obj/src/match/eis-seqblocktranslate.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/eis-sa-common.c -o obj/src/match/eis-sa-common.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-sa-common.o +cc -c src/match/eis-encidxseq.c -o obj/src/match/eis-encidxseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-encidxseq.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-seqranges.c -o obj/src/match/eis-seqranges.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match -cc -c src/match/eis-bwtseq.c -o obj/src/match/eis-bwtseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-bwtseq.o cc -c src/match/eis-sequencemultiread.c -o obj/src/match/eis-sequencemultiread.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/eis-seqblocktranslate.c -o obj/src/match/eis-seqblocktranslate.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-seqblocktranslate.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-specialsrank.c -o obj/src/match/eis-specialsrank.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/eis-sequencemultiread.c -o obj/src/match/eis-sequencemultiread.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-sequencemultiread.o cc -c src/match/eis-specialsrank.c -o obj/src/match/eis-specialsrank.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-specialsrank.o +cc -c src/match/eis-sequencemultiread.c -o obj/src/match/eis-sequencemultiread.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-sequencemultiread.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-suffixarray-interface.c -o obj/src/match/eis-suffixarray-interface.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-suffixerator-interface.c -o obj/src/match/eis-suffixerator-interface.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/eis-seqblocktranslate.c -o obj/src/match/eis-seqblocktranslate.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-seqblocktranslate.o +cc -c src/match/eis-suffixarray-interface.c -o obj/src/match/eis-suffixarray-interface.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-suffixarray-interface.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-voiditf.c -o obj/src/match/eis-voiditf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/eis-suffixarray-interface.c -o obj/src/match/eis-suffixarray-interface.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-suffixarray-interface.o +cc -c src/match/eis-suffixerator-interface.c -o obj/src/match/eis-suffixerator-interface.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-suffixerator-interface.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/encseq2offset.c -o obj/src/match/encseq2offset.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/eis-seqranges.c -o obj/src/match/eis-seqranges.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-seqranges.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/enum-patt.c -o obj/src/match/enum-patt.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/eis-suffixerator-interface.c -o obj/src/match/eis-suffixerator-interface.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-suffixerator-interface.o +cc -c src/match/enum-patt.c -o obj/src/match/enum-patt.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/enum-patt.o cc -c src/match/encseq2offset.c -o obj/src/match/encseq2offset.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/encseq2offset.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-bottomup.c -o obj/src/match/esa-bottomup.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/eis-blockcomp.c -o obj/src/match/eis-blockcomp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-blockcomp.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-dfs.c -o obj/src/match/esa-dfs.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/enum-patt.c -o obj/src/match/enum-patt.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/enum-patt.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-lcpintervals.c -o obj/src/match/esa-lcpintervals.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/eis-blockcomp.c -o obj/src/match/eis-blockcomp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-blockcomp.o +cc -c src/match/diagbandseed.c -o obj/src/match/diagbandseed.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/diagbandseed.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-map.c -o obj/src/match/esa-map.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/esa-dfs.c -o obj/src/match/esa-dfs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-dfs.o -cc -c src/match/esa-lcpintervals.c -o obj/src/match/esa-lcpintervals.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-lcpintervals.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-maxpairs.c -o obj/src/match/esa-maxpairs.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/esa-bottomup.c -o obj/src/match/esa-bottomup.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-bottomup.o +cc -c src/match/eis-voiditf.c -o obj/src/match/eis-voiditf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-voiditf.o +cc -c src/match/esa-lcpintervals.c -o obj/src/match/esa-lcpintervals.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-lcpintervals.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-merge.c -o obj/src/match/esa-merge.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/esa-bottomup.c -o obj/src/match/esa-bottomup.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-bottomup.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-minunique.c -o obj/src/match/esa-minunique.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/eis-voiditf.c -o obj/src/match/eis-voiditf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-voiditf.o -test -d obj/src/match || mkdir -p obj/src/match -cc -c src/match/esa-mmsearch.c -o obj/src/match/esa-mmsearch.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/esa-merge.c -o obj/src/match/esa-merge.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-merge.o cc -c src/match/esa-map.c -o obj/src/match/esa-map.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-map.o -cc -c src/match/esa-minunique.c -o obj/src/match/esa-minunique.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-minunique.o test -d obj/src/match || mkdir -p obj/src/match +cc -c src/match/esa-mmsearch.c -o obj/src/match/esa-mmsearch.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-scanprj.c -o obj/src/match/esa-scanprj.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-seqread.c -o obj/src/match/esa-seqread.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/esa-merge.c -o obj/src/match/esa-merge.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-merge.o +cc -c src/match/esa-minunique.c -o obj/src/match/esa-minunique.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-minunique.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-shulen.c -o obj/src/match/esa-shulen.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/diagbandseed.c -o obj/src/match/diagbandseed.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/diagbandseed.o +cc -c src/match/esa-scanprj.c -o obj/src/match/esa-scanprj.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-scanprj.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-splititv-simple.c -o obj/src/match/esa-splititv-simple.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/esa-scanprj.c -o obj/src/match/esa-scanprj.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-scanprj.o +cc -c src/match/esa-seqread.c -o obj/src/match/esa-seqread.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-seqread.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-splititv.c -o obj/src/match/esa-splititv.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/esa-seqread.c -o obj/src/match/esa-seqread.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-seqread.o +cc -c src/match/esa-maxpairs.c -o obj/src/match/esa-maxpairs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-maxpairs.o +cc -c src/match/esa-mmsearch.c -o obj/src/match/esa-mmsearch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-mmsearch.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-spmitvs.c -o obj/src/match/esa-spmitvs.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/esa-splititv-simple.c -o obj/src/match/esa-splititv-simple.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-splititv-simple.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-spmsk.c -o obj/src/match/esa-spmsk.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/esa-spmitvs.c -o obj/src/match/esa-spmitvs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-spmitvs.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa_lcpintervals_visitor.c -o obj/src/match/esa_lcpintervals_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/esa-maxpairs.c -o obj/src/match/esa-maxpairs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-maxpairs.o -cc -c src/match/esa-splititv.c -o obj/src/match/esa-splititv.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-splititv.o -cc -c src/match/esa-mmsearch.c -o obj/src/match/esa-mmsearch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-mmsearch.o +cc -c src/match/esa-spmitvs.c -o obj/src/match/esa-spmitvs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-spmitvs.o test -d obj/src/match || mkdir -p obj/src/match -cc -c src/match/esa_spmitvs_visitor.c -o obj/src/match/esa_spmitvs_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/esa_lcpintervals_visitor.c -o obj/src/match/esa_lcpintervals_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa_lcpintervals_visitor.o +cc -c src/match/esa_spmitvs_visitor.c -o obj/src/match/esa_spmitvs_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/esa-splititv.c -o obj/src/match/esa-splititv.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-splititv.o +cc -c src/match/esa-shulen.c -o obj/src/match/esa-shulen.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-shulen.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa_visitor.c -o obj/src/match/esa_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/firstcodes-accum.c -o obj/src/match/firstcodes-accum.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/firstcodes-cache.c -o obj/src/match/firstcodes-cache.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/esa_visitor.c -o obj/src/match/esa_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa_visitor.o cc -c src/match/esa_spmitvs_visitor.c -o obj/src/match/esa_spmitvs_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa_spmitvs_visitor.o -test -d obj/src/match || mkdir -p obj/src/match -cc -c src/match/firstcodes-insert.c -o obj/src/match/firstcodes-insert.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/esa_visitor.c -o obj/src/match/esa_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa_visitor.o cc -c src/match/esa-spmsk.c -o obj/src/match/esa-spmsk.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-spmsk.o test -d obj/src/match || mkdir -p obj/src/match +test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/firstcodes-psbuf.c -o obj/src/match/firstcodes-psbuf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/firstcodes-cache.c -o obj/src/match/firstcodes-cache.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes-cache.o +cc -c src/match/firstcodes-insert.c -o obj/src/match/firstcodes-insert.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match +cc -c src/match/firstcodes-cache.c -o obj/src/match/firstcodes-cache.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes-cache.o cc -c src/match/firstcodes-scan.c -o obj/src/match/firstcodes-scan.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/firstcodes-spacelog.c -o obj/src/match/firstcodes-spacelog.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/esa-shulen.c -o obj/src/match/esa-shulen.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-shulen.o +cc -c src/match/firstcodes-accum.c -o obj/src/match/firstcodes-accum.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes-accum.o cc -c src/match/firstcodes-psbuf.c -o obj/src/match/firstcodes-psbuf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes-psbuf.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/firstcodes-tab.c -o obj/src/match/firstcodes-tab.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/firstcodes-accum.c -o obj/src/match/firstcodes-accum.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes-accum.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/firstcodes.c -o obj/src/match/firstcodes.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/firstcodes-spacelog.c -o obj/src/match/firstcodes-spacelog.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes-spacelog.o +cc -c src/match/firstcodes-scan.c -o obj/src/match/firstcodes-scan.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes-scan.o +cc -c src/match/firstcodes-insert.c -o obj/src/match/firstcodes-insert.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes-insert.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/fmi-fwduni.c -o obj/src/match/fmi-fwduni.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/firstcodes-spacelog.c -o obj/src/match/firstcodes-spacelog.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes-spacelog.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/fmi-keyval.c -o obj/src/match/fmi-keyval.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/firstcodes-insert.c -o obj/src/match/firstcodes-insert.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes-insert.o -cc -c src/match/firstcodes-scan.c -o obj/src/match/firstcodes-scan.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes-scan.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/fmi-locate.c -o obj/src/match/fmi-locate.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/fmi-locate.c -o obj/src/match/fmi-locate.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-locate.o +cc -c src/match/fmi-fwduni.c -o obj/src/match/fmi-fwduni.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-fwduni.o +cc -c src/match/firstcodes-tab.c -o obj/src/match/firstcodes-tab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes-tab.o +cc -c src/match/fmi-keyval.c -o obj/src/match/fmi-keyval.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-keyval.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/fmi-map.c -o obj/src/match/fmi-map.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/fmi-fwduni.c -o obj/src/match/fmi-fwduni.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-fwduni.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/fmi-mapspec.c -o obj/src/match/fmi-mapspec.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/fmi-keyval.c -o obj/src/match/fmi-keyval.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-keyval.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/fmi-mkindex.c -o obj/src/match/fmi-mkindex.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/fmi-mapspec.c -o obj/src/match/fmi-mapspec.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-mapspec.o -cc -c src/match/fmi-locate.c -o obj/src/match/fmi-locate.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-locate.o -cc -c src/match/fmi-map.c -o obj/src/match/fmi-map.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-map.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/fmi-save.c -o obj/src/match/fmi-save.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/firstcodes-tab.c -o obj/src/match/firstcodes-tab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes-tab.o +cc -c src/match/fmi-mapspec.c -o obj/src/match/fmi-mapspec.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-mapspec.o +cc -c src/match/fmi-save.c -o obj/src/match/fmi-save.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-save.o +cc -c src/match/fmi-map.c -o obj/src/match/fmi-map.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-map.o +cc -c src/match/fmi-mkindex.c -o obj/src/match/fmi-mkindex.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-mkindex.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/fmi-sufbwtstream.c -o obj/src/match/fmi-sufbwtstream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/ft-eoplist.c -o obj/src/match/ft-eoplist.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/fmi-mkindex.c -o obj/src/match/fmi-mkindex.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-mkindex.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/ft-front-generation.c -o obj/src/match/ft-front-generation.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/ft-front-prune.c -o obj/src/match/ft-front-prune.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/fmi-save.c -o obj/src/match/fmi-save.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-save.o +cc -c src/match/firstcodes.c -o obj/src/match/firstcodes.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes.o +cc -c src/match/ft-front-generation.c -o obj/src/match/ft-front-generation.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/ft-front-generation.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/ft-polish.c -o obj/src/match/ft-polish.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/ft-polish.c -o obj/src/match/ft-polish.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/ft-polish.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/ft-trimstat.c -o obj/src/match/ft-trimstat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/fmi-sufbwtstream.c -o obj/src/match/fmi-sufbwtstream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-sufbwtstream.o -cc -c src/match/firstcodes.c -o obj/src/match/firstcodes.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes.o -test -d obj/src/match || mkdir -p obj/src/match test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/gfa_writer.c -o obj/src/match/gfa_writer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/giextract.c -o obj/src/match/giextract.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/ft-polish.c -o obj/src/match/ft-polish.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/ft-polish.o cc -c src/match/ft-trimstat.c -o obj/src/match/ft-trimstat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/ft-trimstat.o test -d obj/src/match || mkdir -p obj/src/match +cc -c src/match/giextract.c -o obj/src/match/giextract.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/greedyedist.c -o obj/src/match/greedyedist.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/gfa_writer.c -o obj/src/match/gfa_writer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/gfa_writer.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/greedyfwdmat.c -o obj/src/match/greedyfwdmat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/ft-front-generation.c -o obj/src/match/ft-front-generation.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/ft-front-generation.o +cc -c src/match/greedyedist.c -o obj/src/match/greedyedist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/greedyedist.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/hashfirstcodes.c -o obj/src/match/hashfirstcodes.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/greedyedist.c -o obj/src/match/greedyedist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/greedyedist.o +cc -c src/match/greedyfwdmat.c -o obj/src/match/greedyfwdmat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/greedyfwdmat.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/hlk-version.c -o obj/src/match/hlk-version.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/greedyfwdmat.c -o obj/src/match/greedyfwdmat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/greedyfwdmat.o +cc -c src/match/ft-eoplist.c -o obj/src/match/ft-eoplist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/ft-eoplist.o cc -c src/match/hlk-version.c -o obj/src/match/hlk-version.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/hlk-version.o -cc -c src/match/hashfirstcodes.c -o obj/src/match/hashfirstcodes.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/hashfirstcodes.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/hplstore.c -o obj/src/match/hplstore.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/hashfirstcodes.c -o obj/src/match/hashfirstcodes.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/hashfirstcodes.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/idx-limdfs.c -o obj/src/match/idx-limdfs.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/idxlocali.c -o obj/src/match/idxlocali.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/ft-eoplist.c -o obj/src/match/ft-eoplist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/ft-eoplist.o +cc -c src/match/hplstore.c -o obj/src/match/hplstore.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/hplstore.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/idxlocalidp.c -o obj/src/match/idxlocalidp.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/hplstore.c -o obj/src/match/hplstore.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/hplstore.o -cc -c src/match/idxlocali.c -o obj/src/match/idxlocali.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/idxlocali.o +cc -c src/match/giextract.c -o obj/src/match/giextract.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/giextract.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/idxlocalisw.c -o obj/src/match/idxlocalisw.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/idxlocali.c -o obj/src/match/idxlocali.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/idxlocali.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/index_options.c -o obj/src/match/index_options.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/giextract.c -o obj/src/match/giextract.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/giextract.o -test -d obj/src/match || mkdir -p obj/src/match -cc -c src/match/initbasepower.c -o obj/src/match/initbasepower.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/idxlocalidp.c -o obj/src/match/idxlocalidp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/idxlocalidp.o test -d obj/src/match || mkdir -p obj/src/match -cc -c src/match/initeqsvec.c -o obj/src/match/initeqsvec.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/initbasepower.c -o obj/src/match/initbasepower.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/initbasepower.c -o obj/src/match/initbasepower.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/initbasepower.o +cc -c src/match/idxlocalisw.c -o obj/src/match/idxlocalisw.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/idxlocalisw.o test -d obj/src/match || mkdir -p obj/src/match +test -d obj/src/match || mkdir -p obj/src/match +cc -c src/match/initeqsvec.c -o obj/src/match/initeqsvec.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/iter-window.c -o obj/src/match/iter-window.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/idxlocalisw.c -o obj/src/match/idxlocalisw.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/idxlocalisw.o cc -c src/match/initeqsvec.c -o obj/src/match/initeqsvec.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/initeqsvec.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/karlin_altschul_stat.c -o obj/src/match/karlin_altschul_stat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/index_options.c -o obj/src/match/index_options.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/index_options.o +cc -c src/match/iter-window.c -o obj/src/match/iter-window.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/iter-window.o +cc -c src/match/idx-limdfs.c -o obj/src/match/idx-limdfs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/idx-limdfs.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/kmer2string.c -o obj/src/match/kmer2string.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/lua_tools.c -o obj/src/match/lua_tools.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/kmer2string.c -o obj/src/match/kmer2string.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/kmer2string.o -cc -c src/match/iter-window.c -o obj/src/match/iter-window.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/iter-window.o test -d obj/src/match || mkdir -p obj/src/match -cc -c src/match/lua_tools.c -o obj/src/match/lua_tools.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/lua_tools.o cc -c src/match/marksubstring.c -o obj/src/match/marksubstring.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/kmer2string.c -o obj/src/match/kmer2string.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/kmer2string.o +cc -c src/match/lua_tools.c -o obj/src/match/lua_tools.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/lua_tools.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/merger-trie.c -o obj/src/match/merger-trie.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/mssufpat.c -o obj/src/match/mssufpat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/idx-limdfs.c -o obj/src/match/idx-limdfs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/idx-limdfs.o +cc -c src/match/ft-front-prune.c -o obj/src/match/ft-front-prune.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/ft-front-prune.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/myersapm.c -o obj/src/match/myersapm.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/marksubstring.c -o obj/src/match/marksubstring.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/marksubstring.o +cc -c src/match/mssufpat.c -o obj/src/match/mssufpat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/mssufpat.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/nullcols.c -o obj/src/match/nullcols.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/mssufpat.c -o obj/src/match/mssufpat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/mssufpat.o -cc -c src/match/myersapm.c -o obj/src/match/myersapm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/myersapm.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/optionargmode.c -o obj/src/match/optionargmode.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/nullcols.c -o obj/src/match/nullcols.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/nullcols.o +cc -c src/match/optionargmode.c -o obj/src/match/optionargmode.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/optionargmode.o +cc -c src/match/merger-trie.c -o obj/src/match/merger-trie.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/merger-trie.o test -d obj/src/match || mkdir -p obj/src/match +cc -c src/match/nullcols.c -o obj/src/match/nullcols.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/nullcols.o cc -c src/match/pck-count-nodes.c -o obj/src/match/pck-count-nodes.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/pckbucket.c -o obj/src/match/pckbucket.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/merger-trie.c -o obj/src/match/merger-trie.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/merger-trie.o +cc -c src/match/myersapm.c -o obj/src/match/myersapm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/myersapm.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/pckdfs.c -o obj/src/match/pckdfs.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/optionargmode.c -o obj/src/match/optionargmode.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/optionargmode.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/prsqualint.c -o obj/src/match/prsqualint.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/pck-count-nodes.c -o obj/src/match/pck-count-nodes.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/pck-count-nodes.o -cc -c src/match/karlin_altschul_stat.c -o obj/src/match/karlin_altschul_stat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/karlin_altschul_stat.o -cc -c src/match/ft-front-prune.c -o obj/src/match/ft-front-prune.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/ft-front-prune.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/pssm.c -o obj/src/match/pssm.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/karlin_altschul_stat.c -o obj/src/match/karlin_altschul_stat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/karlin_altschul_stat.o +cc -c src/match/prsqualint.c -o obj/src/match/prsqualint.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/prsqualint.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/querymatch-align.c -o obj/src/match/querymatch-align.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/pckbucket.c -o obj/src/match/pckbucket.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/pckbucket.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/querymatch-display.c -o obj/src/match/querymatch-display.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/prsqualint.c -o obj/src/match/prsqualint.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/prsqualint.o +cc -c src/match/pssm.c -o obj/src/match/pssm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/pssm.o cc -c src/match/pckdfs.c -o obj/src/match/pckdfs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/pckdfs.o -test -d obj/src/match || mkdir -p obj/src/match +cc -c src/match/pckbucket.c -o obj/src/match/pckbucket.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/pckbucket.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/querymatch.c -o obj/src/match/querymatch.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/radixsort_str.c -o obj/src/match/radixsort_str.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/randomcodes-correct.c -o obj/src/match/randomcodes-correct.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/pssm.c -o obj/src/match/pssm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/pssm.o +cc -c src/match/querymatch-align.c -o obj/src/match/querymatch-align.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/querymatch-align.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/randomcodes-find-seldom.c -o obj/src/match/randomcodes-find-seldom.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/randomcodes-correct.c -o obj/src/match/randomcodes-correct.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/randomcodes-correct.o +cc -c src/match/randomcodes-find-seldom.c -o obj/src/match/randomcodes-find-seldom.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/randomcodes-find-seldom.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/randomcodes-hpcorrect.c -o obj/src/match/randomcodes-hpcorrect.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/randomcodes-find-seldom.c -o obj/src/match/randomcodes-find-seldom.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/randomcodes-find-seldom.o -cc -c src/match/querymatch-align.c -o obj/src/match/querymatch-align.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/querymatch-align.o +cc -c src/match/randomcodes-correct.c -o obj/src/match/randomcodes-correct.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/randomcodes-correct.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/randomcodes-insert.c -o obj/src/match/randomcodes-insert.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/querymatch-display.c -o obj/src/match/querymatch-display.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/querymatch-display.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/randomcodes-sfx-partssuf.c -o obj/src/match/randomcodes-sfx-partssuf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/querymatch-display.c -o obj/src/match/querymatch-display.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/querymatch-display.o +cc -c src/match/randomcodes-insert.c -o obj/src/match/randomcodes-insert.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/randomcodes-insert.o +cc -c src/match/radixsort_str.c -o obj/src/match/radixsort_str.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/radixsort_str.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/randomcodes-tab.c -o obj/src/match/randomcodes-tab.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/randomcodes-insert.c -o obj/src/match/randomcodes-insert.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/randomcodes-insert.o cc -c src/match/querymatch.c -o obj/src/match/querymatch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/querymatch.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/randomcodes.c -o obj/src/match/randomcodes.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 @@ -3250,405 +3287,409 @@ cc -c src/match/randomcodes-sfx-partssuf.c -o obj/src/match/randomcodes-sfx-partssuf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/randomcodes-sfx-partssuf.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-contfind-bottomup.c -o obj/src/match/rdj-contfind-bottomup.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/radixsort_str.c -o obj/src/match/radixsort_str.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/radixsort_str.o cc -c src/match/randomcodes-tab.c -o obj/src/match/randomcodes-tab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/randomcodes-tab.o +cc -c src/match/rdj-cntlist.c -o obj/src/match/rdj-cntlist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-cntlist.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-contfinder.c -o obj/src/match/rdj-contfinder.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/rdj-cntlist.c -o obj/src/match/rdj-cntlist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-cntlist.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-contigpaths.c -o obj/src/match/rdj-contigpaths.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/randomcodes-hpcorrect.c -o obj/src/match/randomcodes-hpcorrect.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/randomcodes-hpcorrect.o +cc -c src/match/rdj-contigpaths.c -o obj/src/match/rdj-contigpaths.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-contigpaths.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-contigs-graph.c -o obj/src/match/rdj-contigs-graph.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/randomcodes-hpcorrect.c -o obj/src/match/randomcodes-hpcorrect.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/randomcodes-hpcorrect.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-contigs-writer.c -o obj/src/match/rdj-contigs-writer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/rdj-contigpaths.c -o obj/src/match/rdj-contigpaths.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-contigpaths.o +cc -c src/match/rdj-contigs-writer.c -o obj/src/match/rdj-contigs-writer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-contigs-writer.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-errfind.c -o obj/src/match/rdj-errfind.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/rdj-contigs-writer.c -o obj/src/match/rdj-contigs-writer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-contigs-writer.o +cc -c src/match/rdj-contfind-bottomup.c -o obj/src/match/rdj-contfind-bottomup.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-contfind-bottomup.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-ovlfind-bf.c -o obj/src/match/rdj-ovlfind-bf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/rdj-contfind-bottomup.c -o obj/src/match/rdj-contfind-bottomup.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-contfind-bottomup.o +cc -c src/match/randomcodes.c -o obj/src/match/randomcodes.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/randomcodes.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-ovlfind-dp.c -o obj/src/match/rdj-ovlfind-dp.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/rdj-contigs-graph.c -o obj/src/match/rdj-contigs-graph.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-contigs-graph.o +cc -c src/match/rdj-ovlfind-bf.c -o obj/src/match/rdj-ovlfind-bf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-ovlfind-bf.o cc -c src/match/rdj-errfind.c -o obj/src/match/rdj-errfind.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-errfind.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-ovlfind-gusfield.c -o obj/src/match/rdj-ovlfind-gusfield.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/rdj-ovlfind-bf.c -o obj/src/match/rdj-ovlfind-bf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-ovlfind-bf.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-ovlfind-kmp.c -o obj/src/match/rdj-ovlfind-kmp.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/randomcodes.c -o obj/src/match/randomcodes.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/randomcodes.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-pairwise.c -o obj/src/match/rdj-pairwise.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/rdj-ovlfind-gusfield.c -o obj/src/match/rdj-ovlfind-gusfield.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-ovlfind-gusfield.o -test -d obj/src/match || mkdir -p obj/src/match -cc -c src/match/rdj-spmfind.c -o obj/src/match/rdj-spmfind.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/rdj-contigs-graph.c -o obj/src/match/rdj-contigs-graph.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-contigs-graph.o cc -c src/match/rdj-ovlfind-dp.c -o obj/src/match/rdj-ovlfind-dp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-ovlfind-dp.o -cc -c src/match/rdj-ovlfind-kmp.c -o obj/src/match/rdj-ovlfind-kmp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-ovlfind-kmp.o test -d obj/src/match || mkdir -p obj/src/match +cc -c src/match/rdj-spmfind.c -o obj/src/match/rdj-spmfind.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/rdj-ovlfind-gusfield.c -o obj/src/match/rdj-ovlfind-gusfield.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-ovlfind-gusfield.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-spmlist.c -o obj/src/match/rdj-spmlist.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/rdj-ovlfind-kmp.c -o obj/src/match/rdj-ovlfind-kmp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-ovlfind-kmp.o +test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-spmproc.c -o obj/src/match/rdj-spmproc.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/rdj-pairwise.c -o obj/src/match/rdj-pairwise.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-pairwise.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-strgraph.c -o obj/src/match/rdj-strgraph.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/rdj-spmproc.c -o obj/src/match/rdj-spmproc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-spmproc.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-twobitenc-editor.c -o obj/src/match/rdj-twobitenc-editor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/rdj-pairwise.c -o obj/src/match/rdj-pairwise.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-pairwise.o +cc -c src/match/rdj-spmfind.c -o obj/src/match/rdj-spmfind.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-spmfind.o +cc -c src/match/rdj-contfinder.c -o obj/src/match/rdj-contfinder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-contfinder.o cc -c src/match/rdj-twobitenc-editor.c -o obj/src/match/rdj-twobitenc-editor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-twobitenc-editor.o test -d obj/src/match || mkdir -p obj/src/match -test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-version.c -o obj/src/match/rdj-version.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/reads2twobit.c -o obj/src/match/reads2twobit.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/rdj-version.c -o obj/src/match/rdj-version.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-version.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/reads_libraries_table.c -o obj/src/match/reads_libraries_table.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/reads_libraries_table.c -o obj/src/match/reads_libraries_table.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/reads_libraries_table.o +cc -c src/match/rdj-version.c -o obj/src/match/rdj-version.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-version.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rectangle-store.c -o obj/src/match/rectangle-store.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/rdj-contfinder.c -o obj/src/match/rdj-contfinder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-contfinder.o +cc -c src/match/rdj-spmlist.c -o obj/src/match/rdj-spmlist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-spmlist.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/revcompl.c -o obj/src/match/revcompl.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/rectangle-store.c -o obj/src/match/rectangle-store.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rectangle-store.o -test -d obj/src/match || mkdir -p obj/src/match +cc -c src/match/reads_libraries_table.c -o obj/src/match/reads_libraries_table.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/reads_libraries_table.o cc -c src/match/revcompl.c -o obj/src/match/revcompl.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/revcompl.o +test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/seed-extend-iter.c -o obj/src/match/seed-extend-iter.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/rdj-spmfind.c -o obj/src/match/rdj-spmfind.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-spmfind.o +cc -c src/match/rectangle-store.c -o obj/src/match/rectangle-store.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rectangle-store.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/seed-extend.c -o obj/src/match/seed-extend.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/seed_extend_parts.c -o obj/src/match/seed_extend_parts.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/seed_extend_parts.c -o obj/src/match/seed_extend_parts.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/seed_extend_parts.o cc -c src/match/seed-extend-iter.c -o obj/src/match/seed-extend-iter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/seed-extend-iter.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/seqabstract.c -o obj/src/match/seqabstract.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/seed_extend_parts.c -o obj/src/match/seed_extend_parts.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/seed_extend_parts.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/seqnumrelpos.c -o obj/src/match/seqnumrelpos.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/seqnumrelpos.c -o obj/src/match/seqnumrelpos.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/seqnumrelpos.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-apfxlen.c -o obj/src/match/sfx-apfxlen.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/rdj-spmlist.c -o obj/src/match/rdj-spmlist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-spmlist.o -test -d obj/src/match || mkdir -p obj/src/match -cc -c src/match/sfx-bentsedg.c -o obj/src/match/sfx-bentsedg.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/seqabstract.c -o obj/src/match/seqabstract.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/seqabstract.o test -d obj/src/match || mkdir -p obj/src/match -cc -c src/match/sfx-bltrie.c -o obj/src/match/sfx-bltrie.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/sfx-bentsedg.c -o obj/src/match/sfx-bentsedg.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/sfx-apfxlen.c -o obj/src/match/sfx-apfxlen.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-apfxlen.o cc -c src/match/seed-extend.c -o obj/src/match/seed-extend.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/seed-extend.o test -d obj/src/match || mkdir -p obj/src/match +cc -c src/match/sfx-bltrie.c -o obj/src/match/sfx-bltrie.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-copysort.c -o obj/src/match/sfx-copysort.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/sfx-copysort.c -o obj/src/match/sfx-copysort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-copysort.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-diffcov.c -o obj/src/match/sfx-diffcov.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/sfx-copysort.c -o obj/src/match/sfx-copysort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-copysort.o +cc -c src/match/sfx-bltrie.c -o obj/src/match/sfx-bltrie.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-bltrie.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-enumcodes.c -o obj/src/match/sfx-enumcodes.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/sfx-enumcodes.c -o obj/src/match/sfx-enumcodes.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-enumcodes.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-lcpvalues.c -o obj/src/match/sfx-lcpvalues.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/sfx-bltrie.c -o obj/src/match/sfx-bltrie.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-bltrie.o +cc -c src/match/reads2twobit.c -o obj/src/match/reads2twobit.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/reads2twobit.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-linlcp.c -o obj/src/match/sfx-linlcp.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/sfx-lcpvalues.c -o obj/src/match/sfx-lcpvalues.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-lcpvalues.o +cc -c src/match/sfx-bentsedg.c -o obj/src/match/sfx-bentsedg.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-bentsedg.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-lwcheck.c -o obj/src/match/sfx-lwcheck.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/sfx-bentsedg.c -o obj/src/match/sfx-bentsedg.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-bentsedg.o +cc -c src/match/sfx-lwcheck.c -o obj/src/match/sfx-lwcheck.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-lwcheck.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-mappedstr.c -o obj/src/match/sfx-mappedstr.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/reads2twobit.c -o obj/src/match/reads2twobit.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/reads2twobit.o +cc -c src/match/sfx-lcpvalues.c -o obj/src/match/sfx-lcpvalues.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-lcpvalues.o +cc -c src/match/sfx-linlcp.c -o obj/src/match/sfx-linlcp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-linlcp.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-maprange.c -o obj/src/match/sfx-maprange.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/sfx-lwcheck.c -o obj/src/match/sfx-lwcheck.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-lwcheck.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-opt.c -o obj/src/match/sfx-opt.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/sfx-linlcp.c -o obj/src/match/sfx-linlcp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-linlcp.o +cc -c src/match/sfx-opt.c -o obj/src/match/sfx-opt.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-opt.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-outprj.c -o obj/src/match/sfx-outprj.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/sfx-outprj.c -o obj/src/match/sfx-outprj.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-outprj.o -cc -c src/match/sfx-opt.c -o obj/src/match/sfx-opt.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-opt.o -cc -c src/match/sfx-diffcov.c -o obj/src/match/sfx-diffcov.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-diffcov.o cc -c src/match/sfx-maprange.c -o obj/src/match/sfx-maprange.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-maprange.o +cc -c src/match/sfx-mappedstr.c -o obj/src/match/sfx-mappedstr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-mappedstr.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-partssuf.c -o obj/src/match/sfx-partssuf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/sfx-outprj.c -o obj/src/match/sfx-outprj.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-outprj.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-radixsort.c -o obj/src/match/sfx-radixsort.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-run.c -o obj/src/match/sfx-run.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/sfx-diffcov.c -o obj/src/match/sfx-diffcov.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-diffcov.o +cc -c src/match/sfx-radixsort.c -o obj/src/match/sfx-radixsort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-radixsort.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-sain.c -o obj/src/match/sfx-sain.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/sfx-mappedstr.c -o obj/src/match/sfx-mappedstr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-mappedstr.o -cc -c src/match/sfx-radixsort.c -o obj/src/match/sfx-radixsort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-radixsort.o test -d obj/src/match || mkdir -p obj/src/match +cc -c src/match/rdj-strgraph.c -o obj/src/match/rdj-strgraph.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-strgraph.o cc -c src/match/sfx-shortreadsort.c -o obj/src/match/sfx-shortreadsort.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-suffixer.c -o obj/src/match/sfx-suffixer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/sfx-run.c -o obj/src/match/sfx-run.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-run.o cc -c src/match/sfx-partssuf.c -o obj/src/match/sfx-partssuf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-partssuf.o +cc -c src/match/sfx-run.c -o obj/src/match/sfx-run.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-run.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-suffixgetset.c -o obj/src/match/sfx-suffixgetset.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-suftaborder.c -o obj/src/match/sfx-suftaborder.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/sfx-suftaborder.c -o obj/src/match/sfx-suftaborder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-suftaborder.o +cc -c src/match/sfx-suffixgetset.c -o obj/src/match/sfx-suffixgetset.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-suffixgetset.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/shu-dfs.c -o obj/src/match/shu-dfs.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/sfx-suffixgetset.c -o obj/src/match/sfx-suffixgetset.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-suffixgetset.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/shu-divergence.c -o obj/src/match/shu-divergence.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/sfx-shortreadsort.c -o obj/src/match/sfx-shortreadsort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-shortreadsort.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/shu-encseq-gc.c -o obj/src/match/shu-encseq-gc.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/shu-divergence.c -o obj/src/match/shu-divergence.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/shu-divergence.o +cc -c src/match/shu-encseq-gc.c -o obj/src/match/shu-encseq-gc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/shu-encseq-gc.o +cc -c src/match/shu-dfs.c -o obj/src/match/shu-dfs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/shu-dfs.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/shu-genomediff.c -o obj/src/match/shu-genomediff.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/rdj-strgraph.c -o obj/src/match/rdj-strgraph.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-strgraph.o -cc -c src/match/shu-dfs.c -o obj/src/match/shu-dfs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/shu-dfs.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/shu_unitfile.c -o obj/src/match/shu_unitfile.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/shu-encseq-gc.c -o obj/src/match/shu-encseq-gc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/shu-encseq-gc.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/spaced-seeds.c -o obj/src/match/spaced-seeds.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/spaced-seeds.c -o obj/src/match/spaced-seeds.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/spaced-seeds.o +cc -c src/match/sfx-suffixer.c -o obj/src/match/sfx-suffixer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-suffixer.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/specialrank.c -o obj/src/match/specialrank.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/spaced-seeds.c -o obj/src/match/spaced-seeds.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/spaced-seeds.o +cc -c src/match/shu-genomediff.c -o obj/src/match/shu-genomediff.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/shu-genomediff.o cc -c src/match/shu_unitfile.c -o obj/src/match/shu_unitfile.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/shu_unitfile.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/spmsuftab.c -o obj/src/match/spmsuftab.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/squarededist.c -o obj/src/match/squarededist.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/specialrank.c -o obj/src/match/specialrank.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/specialrank.o -cc -c src/match/spmsuftab.c -o obj/src/match/spmsuftab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/spmsuftab.o -cc -c src/match/squarededist.c -o obj/src/match/squarededist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/squarededist.o -cc -c src/match/shu-genomediff.c -o obj/src/match/shu-genomediff.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/shu-genomediff.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/substriter.c -o obj/src/match/substriter.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/spmsuftab.c -o obj/src/match/spmsuftab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/spmsuftab.o +cc -c src/match/squarededist.c -o obj/src/match/squarededist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/squarededist.o +cc -c src/match/specialrank.c -o obj/src/match/specialrank.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/specialrank.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/tagerator.c -o obj/src/match/tagerator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/test-mappedstr.c -o obj/src/match/test-mappedstr.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/substriter.c -o obj/src/match/substriter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/substriter.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/test-maxpairs.c -o obj/src/match/test-maxpairs.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/substriter.c -o obj/src/match/substriter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/substriter.o +cc -c src/match/sfx-sain.c -o obj/src/match/sfx-sain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-sain.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/test-mergeesa.c -o obj/src/match/test-mergeesa.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/test-mappedstr.c -o obj/src/match/test-mappedstr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/test-mappedstr.o -cc -c src/match/test-maxpairs.c -o obj/src/match/test-maxpairs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/test-maxpairs.o +cc -c src/match/test-mergeesa.c -o obj/src/match/test-mergeesa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/test-mergeesa.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/test-mtrieins.c -o obj/src/match/test-mtrieins.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/test-pairwise.c -o obj/src/match/test-pairwise.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/test-mergeesa.c -o obj/src/match/test-mergeesa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/test-mergeesa.o -test -d obj/src/match || mkdir -p obj/src/match -cc -c src/match/turnwheels.c -o obj/src/match/turnwheels.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/test-mappedstr.c -o obj/src/match/test-mappedstr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/test-mappedstr.o +cc -c src/match/test-maxpairs.c -o obj/src/match/test-maxpairs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/test-maxpairs.o cc -c src/match/test-mtrieins.c -o obj/src/match/test-mtrieins.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/test-mtrieins.o test -d obj/src/match || mkdir -p obj/src/match -cc -c src/match/twobits2kmers.c -o obj/src/match/twobits2kmers.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/turnwheels.c -o obj/src/match/turnwheels.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/turnwheels.o cc -c src/match/test-pairwise.c -o obj/src/match/test-pairwise.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/test-pairwise.o -cc -c src/match/tagerator.c -o obj/src/match/tagerator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/tagerator.o +cc -c src/match/turnwheels.c -o obj/src/match/turnwheels.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/match || mkdir -p obj/src/match test -d obj/src/match || mkdir -p obj/src/match +cc -c src/match/twobits2kmers.c -o obj/src/match/twobits2kmers.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/tyr-map.c -o obj/src/match/tyr-map.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/tagerator.c -o obj/src/match/tagerator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/tagerator.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/tyr-mersplit.c -o obj/src/match/tyr-mersplit.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/tyr-mkindex.c -o obj/src/match/tyr-mkindex.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/twobits2kmers.c -o obj/src/match/twobits2kmers.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/twobits2kmers.o +cc -c src/match/turnwheels.c -o obj/src/match/turnwheels.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/turnwheels.o test -d obj/src/match || mkdir -p obj/src/match -cc -c src/match/tyr-map.c -o obj/src/match/tyr-map.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/tyr-map.o cc -c src/match/tyr-occratio.c -o obj/src/match/tyr-occratio.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/twobits2kmers.c -o obj/src/match/twobits2kmers.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/twobits2kmers.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/tyr-search.c -o obj/src/match/tyr-search.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/sfx-suffixer.c -o obj/src/match/sfx-suffixer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-suffixer.o -cc -c src/match/tyr-mersplit.c -o obj/src/match/tyr-mersplit.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/tyr-mersplit.o -cc -c src/match/tyr-mkindex.c -o obj/src/match/tyr-mkindex.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/tyr-mkindex.o +cc -c src/match/tyr-occratio.c -o obj/src/match/tyr-occratio.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/tyr-occratio.o +cc -c src/match/tyr-map.c -o obj/src/match/tyr-map.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/tyr-map.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/xdrop.c -o obj/src/match/xdrop.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/tyr-mkindex.c -o obj/src/match/tyr-mkindex.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/tyr-mkindex.o +cc -c src/match/tyr-search.c -o obj/src/match/tyr-search.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/tyr-search.o test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/gt_ltrclustering.c -o obj/src/ltr/gt_ltrclustering.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/ltr || mkdir -p obj/src/ltr -cc -c src/match/tyr-occratio.c -o obj/src/match/tyr-occratio.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/tyr-occratio.o cc -c src/ltr/gt_ltrdigest.c -o obj/src/ltr/gt_ltrdigest.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/gt_ltrharvest.c -o obj/src/ltr/gt_ltrharvest.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/tyr-search.c -o obj/src/match/tyr-search.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/tyr-search.o -cc -c src/match/sfx-sain.c -o obj/src/match/sfx-sain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-sain.o +cc -c src/match/tyr-mersplit.c -o obj/src/match/tyr-mersplit.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/tyr-mersplit.o cc -c src/ltr/gt_ltrclustering.c -o obj/src/ltr/gt_ltrclustering.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/gt_ltrclustering.o test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltr_classify_stream.c -o obj/src/ltr/ltr_classify_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/ltr || mkdir -p obj/src/ltr +cc -c src/ltr/gt_ltrdigest.c -o obj/src/ltr/gt_ltrdigest.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/gt_ltrdigest.o cc -c src/ltr/ltr_cluster_prepare_seq_visitor.c -o obj/src/ltr/ltr_cluster_prepare_seq_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/ltr/gt_ltrharvest.c -o obj/src/ltr/gt_ltrharvest.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/gt_ltrharvest.o test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltr_cluster_stream.c -o obj/src/ltr/ltr_cluster_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/ltr/gt_ltrdigest.c -o obj/src/ltr/gt_ltrdigest.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/gt_ltrdigest.o -cc -c src/ltr/gt_ltrharvest.c -o obj/src/ltr/gt_ltrharvest.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/gt_ltrharvest.o test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltr_four_char_motif.c -o obj/src/ltr/ltr_four_char_motif.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/ltr/ltr_classify_stream.c -o obj/src/ltr/ltr_classify_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltr_classify_stream.o test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltr_input_check_visitor.c -o obj/src/ltr/ltr_input_check_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/ltr/ltr_cluster_prepare_seq_visitor.c -o obj/src/ltr/ltr_cluster_prepare_seq_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltr_cluster_prepare_seq_visitor.o -test -d obj/src/ltr || mkdir -p obj/src/ltr -cc -c src/ltr/ltr_orf_annotator_stream.c -o obj/src/ltr/ltr_orf_annotator_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/xdrop.c -o obj/src/match/xdrop.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/xdrop.o cc -c src/ltr/ltr_four_char_motif.c -o obj/src/ltr/ltr_four_char_motif.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltr_four_char_motif.o -cc -c src/ltr/ltr_classify_stream.c -o obj/src/ltr/ltr_classify_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltr_classify_stream.o test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltr_refseq_match_stream.c -o obj/src/ltr/ltr_refseq_match_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/ltr/ltr_input_check_visitor.c -o obj/src/ltr/ltr_input_check_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltr_input_check_visitor.o test -d obj/src/ltr || mkdir -p obj/src/ltr -cc -c src/ltr/ltrdigest_file_out_stream.c -o obj/src/ltr/ltrdigest_file_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/ltr/ltr_orf_annotator_stream.c -o obj/src/ltr/ltr_orf_annotator_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/ltr || mkdir -p obj/src/ltr -cc -c src/ltr/ltrdigest_pbs_visitor.c -o obj/src/ltr/ltrdigest_pbs_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/ltr/ltr_input_check_visitor.c -o obj/src/ltr/ltr_input_check_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltr_input_check_visitor.o +cc -c src/ltr/ltrdigest_file_out_stream.c -o obj/src/ltr/ltrdigest_file_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/ltr/ltr_cluster_stream.c -o obj/src/ltr/ltr_cluster_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltr_cluster_stream.o cc -c src/ltr/ltr_orf_annotator_stream.c -o obj/src/ltr/ltr_orf_annotator_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltr_orf_annotator_stream.o test -d obj/src/ltr || mkdir -p obj/src/ltr +cc -c src/ltr/ltrdigest_pbs_visitor.c -o obj/src/ltr/ltrdigest_pbs_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltrdigest_pdom_visitor.c -o obj/src/ltr/ltrdigest_pdom_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltrdigest_ppt_visitor.c -o obj/src/ltr/ltrdigest_ppt_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/xdrop.c -o obj/src/match/xdrop.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/xdrop.o +cc -c src/ltr/ltr_refseq_match_stream.c -o obj/src/ltr/ltr_refseq_match_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltr_refseq_match_stream.o test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltrdigest_strand_assign_visitor.c -o obj/src/ltr/ltrdigest_strand_assign_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/ltr/ltr_refseq_match_stream.c -o obj/src/ltr/ltr_refseq_match_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltr_refseq_match_stream.o cc -c src/ltr/ltrdigest_strand_assign_visitor.c -o obj/src/ltr/ltrdigest_strand_assign_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrdigest_strand_assign_visitor.o -test -d obj/src/ltr || mkdir -p obj/src/ltr +cc -c src/ltr/ltrdigest_pbs_visitor.c -o obj/src/ltr/ltrdigest_pbs_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrdigest_pbs_visitor.o test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltrharvest_fasta_out_stream.c -o obj/src/ltr/ltrharvest_fasta_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltrharvest_fasta_out_visitor.c -o obj/src/ltr/ltrharvest_fasta_out_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/ltr/ltrdigest_pbs_visitor.c -o obj/src/ltr/ltrdigest_pbs_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrdigest_pbs_visitor.o +cc -c src/ltr/ltrdigest_file_out_stream.c -o obj/src/ltr/ltrdigest_file_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrdigest_file_out_stream.o cc -c src/ltr/ltrharvest_fasta_out_stream.c -o obj/src/ltr/ltrharvest_fasta_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrharvest_fasta_out_stream.o test -d obj/src/ltr || mkdir -p obj/src/ltr +cc -c src/ltr/ltrharvest_fasta_out_visitor.c -o obj/src/ltr/ltrharvest_fasta_out_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrharvest_fasta_out_visitor.o cc -c src/ltr/ltrharvest_stream.c -o obj/src/ltr/ltrharvest_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltrharvest_tabout_stream.c -o obj/src/ltr/ltrharvest_tabout_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/ltr/ltrdigest_ppt_visitor.c -o obj/src/ltr/ltrdigest_ppt_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrdigest_ppt_visitor.o -cc -c src/ltr/ltrdigest_file_out_stream.c -o obj/src/ltr/ltrdigest_file_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrdigest_file_out_stream.o test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltrharvest_tabout_visitor.c -o obj/src/ltr/ltrharvest_tabout_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/pdom_model_set.c -o obj/src/ltr/pdom_model_set.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/ltr/ltrharvest_tabout_stream.c -o obj/src/ltr/ltrharvest_tabout_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrharvest_tabout_stream.o -cc -c src/ltr/ltrharvest_fasta_out_visitor.c -o obj/src/ltr/ltrharvest_fasta_out_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrharvest_fasta_out_visitor.o test -d obj/src/mgth || mkdir -p obj/src/mgth cc -c src/mgth/metagenomethreader.c -o obj/src/mgth/metagenomethreader.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/ltr/ltrharvest_tabout_visitor.c -o obj/src/ltr/ltrharvest_tabout_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrharvest_tabout_visitor.o test -d obj/src/mgth || mkdir -p obj/src/mgth cc -c src/mgth/mg_codon.c -o obj/src/mgth/mg_codon.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/ltr/pdom_model_set.c -o obj/src/ltr/pdom_model_set.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/pdom_model_set.o +cc -c src/ltr/ltrdigest_pdom_visitor.c -o obj/src/ltr/ltrdigest_pdom_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrdigest_pdom_visitor.o cc -c src/mgth/mg_codon.c -o obj/src/mgth/mg_codon.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/mgth/mg_codon.o test -d obj/src/mgth || mkdir -p obj/src/mgth cc -c src/mgth/mg_combinedscore.c -o obj/src/mgth/mg_combinedscore.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/ltr/pdom_model_set.c -o obj/src/ltr/pdom_model_set.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/pdom_model_set.o test -d obj/src/mgth || mkdir -p obj/src/mgth cc -c src/mgth/mg_compute_gene_prediction.c -o obj/src/mgth/mg_compute_gene_prediction.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/ltr/ltrharvest_tabout_visitor.c -o obj/src/ltr/ltrharvest_tabout_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrharvest_tabout_visitor.o test -d obj/src/mgth || mkdir -p obj/src/mgth cc -c src/mgth/mg_computepath.c -o obj/src/mgth/mg_computepath.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/mgth/metagenomethreader.c -o obj/src/mgth/metagenomethreader.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/mgth/metagenomethreader.o test -d obj/src/mgth || mkdir -p obj/src/mgth cc -c src/mgth/mg_outputwriter.c -o obj/src/mgth/mg_outputwriter.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/ltr/ltrdigest_pdom_visitor.c -o obj/src/ltr/ltrdigest_pdom_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrdigest_pdom_visitor.o +cc -c src/ltr/ltrharvest_stream.c -o obj/src/ltr/ltrharvest_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrharvest_stream.o +cc -c src/mgth/mg_computepath.c -o obj/src/mgth/mg_computepath.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/mgth/mg_computepath.o test -d obj/src/mgth || mkdir -p obj/src/mgth cc -c src/mgth/mg_reverse.c -o obj/src/mgth/mg_reverse.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/mgth/mg_computepath.c -o obj/src/mgth/mg_computepath.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/mgth/mg_computepath.o test -d obj/src/mgth || mkdir -p obj/src/mgth cc -c src/mgth/mg_xmlparser.c -o obj/src/mgth/mg_xmlparser.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/mgth/mg_combinedscore.c -o obj/src/mgth/mg_combinedscore.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/mgth/mg_combinedscore.o -test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch -cc -c src/annotationsketch/block.c -o obj/src/annotationsketch/block.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/mgth/mg_reverse.c -o obj/src/mgth/mg_reverse.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/mgth/mg_reverse.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch -cc -c src/annotationsketch/canvas.c -o obj/src/annotationsketch/canvas.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/ltr/ltrharvest_stream.c -o obj/src/ltr/ltrharvest_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrharvest_stream.o +cc -c src/annotationsketch/block.c -o obj/src/annotationsketch/block.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/mgth/mg_compute_gene_prediction.c -o obj/src/mgth/mg_compute_gene_prediction.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/mgth/mg_compute_gene_prediction.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch +cc -c src/annotationsketch/canvas.c -o obj/src/annotationsketch/canvas.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/mgth/mg_outputwriter.c -o obj/src/mgth/mg_outputwriter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/mgth/mg_outputwriter.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/canvas_cairo.c -o obj/src/annotationsketch/canvas_cairo.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/canvas_cairo_context.c -o obj/src/annotationsketch/canvas_cairo_context.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/mgth/mg_xmlparser.c -o obj/src/mgth/mg_xmlparser.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/mgth/mg_xmlparser.o +cc -c src/annotationsketch/canvas_cairo_context.c -o obj/src/annotationsketch/canvas_cairo_context.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/canvas_cairo_context.o +cc -c src/annotationsketch/canvas.c -o obj/src/annotationsketch/canvas.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/canvas.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/canvas_cairo_file.c -o obj/src/annotationsketch/canvas_cairo_file.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/annotationsketch/canvas_cairo_context.c -o obj/src/annotationsketch/canvas_cairo_context.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/canvas_cairo_context.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/color.c -o obj/src/annotationsketch/color.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/annotationsketch/canvas_cairo_file.c -o obj/src/annotationsketch/canvas_cairo_file.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/canvas_cairo_file.o -cc -c src/annotationsketch/canvas.c -o obj/src/annotationsketch/canvas.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/canvas.o -cc -c src/annotationsketch/color.c -o obj/src/annotationsketch/color.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/color.o -cc -c src/mgth/mg_outputwriter.c -o obj/src/mgth/mg_outputwriter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/mgth/mg_outputwriter.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/coords.c -o obj/src/annotationsketch/coords.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch -cc -c src/annotationsketch/custom_track.c -o obj/src/annotationsketch/custom_track.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/annotationsketch/color.c -o obj/src/annotationsketch/color.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/color.o +cc -c src/annotationsketch/block.c -o obj/src/annotationsketch/block.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/block.o +cc -c src/annotationsketch/canvas_cairo_file.c -o obj/src/annotationsketch/canvas_cairo_file.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/canvas_cairo_file.o +cc -c src/annotationsketch/coords.c -o obj/src/annotationsketch/coords.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/coords.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/custom_track_example.c -o obj/src/annotationsketch/custom_track_example.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch +cc -c src/annotationsketch/custom_track.c -o obj/src/annotationsketch/custom_track.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch +cc -c src/annotationsketch/canvas_cairo.c -o obj/src/annotationsketch/canvas_cairo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/canvas_cairo.o cc -c src/annotationsketch/custom_track_gc_content.c -o obj/src/annotationsketch/custom_track_gc_content.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/annotationsketch/coords.c -o obj/src/annotationsketch/coords.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/coords.o -cc -c src/annotationsketch/block.c -o obj/src/annotationsketch/block.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/block.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/custom_track_script_wrapper.c -o obj/src/annotationsketch/custom_track_script_wrapper.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/diagram.c -o obj/src/annotationsketch/diagram.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/annotationsketch/custom_track.c -o obj/src/annotationsketch/custom_track.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/custom_track.o cc -c src/annotationsketch/custom_track_example.c -o obj/src/annotationsketch/custom_track_example.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/custom_track_example.o +cc -c src/annotationsketch/custom_track.c -o obj/src/annotationsketch/custom_track.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/custom_track.o cc -c src/annotationsketch/custom_track_script_wrapper.c -o obj/src/annotationsketch/custom_track_script_wrapper.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/custom_track_script_wrapper.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch -test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/drawing_range.c -o obj/src/annotationsketch/drawing_range.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/element.c -o obj/src/annotationsketch/element.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/annotationsketch/custom_track_gc_content.c -o obj/src/annotationsketch/custom_track_gc_content.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/custom_track_gc_content.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/graphics.c -o obj/src/annotationsketch/graphics.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/annotationsketch/custom_track_gc_content.c -o obj/src/annotationsketch/custom_track_gc_content.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/custom_track_gc_content.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/graphics_cairo.c -o obj/src/annotationsketch/graphics_cairo.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/annotationsketch/drawing_range.c -o obj/src/annotationsketch/drawing_range.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/drawing_range.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/gt_sketch.c -o obj/src/annotationsketch/gt_sketch.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/annotationsketch/canvas_cairo.c -o obj/src/annotationsketch/canvas_cairo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/canvas_cairo.o +cc -c src/annotationsketch/element.c -o obj/src/annotationsketch/element.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/element.o +cc -c src/annotationsketch/diagram.c -o obj/src/annotationsketch/diagram.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/diagram.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/gt_sketch_page.c -o obj/src/annotationsketch/gt_sketch_page.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/annotationsketch/element.c -o obj/src/annotationsketch/element.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/element.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/image_info.c -o obj/src/annotationsketch/image_info.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/annotationsketch/graphics.c -o obj/src/annotationsketch/graphics.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/graphics.o +test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch +cc -c src/annotationsketch/layout.c -o obj/src/annotationsketch/layout.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/annotationsketch/gt_sketch.c -o obj/src/annotationsketch/gt_sketch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/gt_sketch.o -cc -c src/annotationsketch/diagram.c -o obj/src/annotationsketch/diagram.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/diagram.o cc -c src/annotationsketch/image_info.c -o obj/src/annotationsketch/image_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/image_info.o cc -c src/annotationsketch/gt_sketch_page.c -o obj/src/annotationsketch/gt_sketch_page.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/gt_sketch_page.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch -cc -c src/annotationsketch/layout.c -o obj/src/annotationsketch/layout.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/line.c -o obj/src/annotationsketch/line.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/line_breaker.c -o obj/src/annotationsketch/line_breaker.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/line_breaker_bases.c -o obj/src/annotationsketch/line_breaker_bases.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/annotationsketch/graphics.c -o obj/src/annotationsketch/graphics.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/graphics.o +cc -c src/annotationsketch/line_breaker.c -o obj/src/annotationsketch/line_breaker.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/line_breaker.o +cc -c src/annotationsketch/graphics_cairo.c -o obj/src/annotationsketch/graphics_cairo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/graphics_cairo.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch +cc -c src/annotationsketch/layout.c -o obj/src/annotationsketch/layout.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/layout.o cc -c src/annotationsketch/line_breaker_captions.c -o obj/src/annotationsketch/line_breaker_captions.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/annotationsketch/line_breaker.c -o obj/src/annotationsketch/line_breaker.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/line_breaker.o cc -c src/annotationsketch/line_breaker_bases.c -o obj/src/annotationsketch/line_breaker_bases.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/line_breaker_bases.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/luastyle.c -o obj/src/annotationsketch/luastyle.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/rec_map.c -o obj/src/annotationsketch/rec_map.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/annotationsketch/luastyle.c -o obj/src/annotationsketch/luastyle.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/luastyle.o -cc -c src/annotationsketch/line_breaker_captions.c -o obj/src/annotationsketch/line_breaker_captions.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/line_breaker_captions.o cc -c src/annotationsketch/line.c -o obj/src/annotationsketch/line.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/line.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch +cc -c src/annotationsketch/luastyle.c -o obj/src/annotationsketch/luastyle.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/luastyle.o cc -c src/annotationsketch/style.c -o obj/src/annotationsketch/style.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/text_width_calculator.c -o obj/src/annotationsketch/text_width_calculator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/annotationsketch/line_breaker_captions.c -o obj/src/annotationsketch/line_breaker_captions.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/line_breaker_captions.o cc -c src/annotationsketch/rec_map.c -o obj/src/annotationsketch/rec_map.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/rec_map.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch -cc -c src/annotationsketch/layout.c -o obj/src/annotationsketch/layout.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/layout.o cc -c src/annotationsketch/text_width_calculator_cairo.c -o obj/src/annotationsketch/text_width_calculator_cairo.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch -cc -c src/annotationsketch/track.c -o obj/src/annotationsketch/track.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/annotationsketch/text_width_calculator.c -o obj/src/annotationsketch/text_width_calculator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/text_width_calculator.o echo '[gathering public API symbols to obj/public_symbols.lst]' [gathering public API symbols to obj/public_symbols.lst] +test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch printf "VERSION {\n\tglobal:\n" > obj/public_symbols.lst +cc -c src/annotationsketch/track.c -o obj/src/annotationsketch/track.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cat src/core/alphabet_api.h src/core/array2dim_api.h src/core/array2dim_sparse_api.h src/core/array3dim_api.h src/core/array_api.h src/core/arraydef_api.h src/core/assert_api.h src/core/basename_api.h src/core/bioseq_api.h src/core/bittab_api.h src/core/bool_matrix_api.h src/core/bsearch_api.h src/core/byte_popcount_api.h src/core/byte_select_api.h src/core/chardef_api.h src/core/class_alloc_api.h src/core/codon_api.h src/core/codon_iterator_api.h src/core/codon_iterator_encseq_api.h src/core/codon_iterator_simple_api.h src/core/compat_api.h src/core/countingsort_api.h src/core/cstr_api.h src/core/cstr_array_api.h src/core/cstr_table_api.h src/core/deprecated_api.h src/core/disc_distri_api.h src/core/divmodmul_api.h src/core/dlist_api.h src/core/encseq_api.h src/core/endianess_api.h src/core/ensure_api.h src/core/error_api.h src/core/fa_api.h src/core/fasta_api.h src/core/fasta_reader_api.h src/core/file_api.h src/core/fileutils_api.h src/core/fptr_api.h src/core/grep_api.h src/core/hashmap_api.h src/core/init_api.h src/core/interval_tree_api.h src/core/log_api.h src/core/logger_api.h src/core/ma_api.h src/core/mathsupport_api.h src/core/md5_encoder_api.h src/core/md5_fingerprint_api.h src/core/md5_seqid_api.h src/core/md5_tab_api.h src/core/minmax_api.h src/core/msort_api.h src/core/multithread_api.h src/core/option_api.h src/core/orf_api.h src/core/output_file_api.h src/core/parseutils_api.h src/core/phase_api.h src/core/qsort_r_api.h src/core/queue_api.h src/core/range_api.h src/core/readmode_api.h src/core/safearith_api.h src/core/score_matrix_api.h src/core/seq_api.h src/core/seq_iterator_api.h src/core/seq_iterator_fastq_api.h src/core/seq_iterator_sequence_buffer_api.h src/core/splitter_api.h src/core/str_api.h src/core/str_array_api.h src/core/str_cache_api.h src/core/strand_api.h src/core/strcmp_api.h src/core/symbol_api.h src/core/thread_api.h src/core/timer_api.h src/core/tool_api.h src/core/toolbox_api.h src/core/tooldriver_api.h src/core/trans_table_api.h src/core/translator_api.h src/core/types_api.h src/core/undef_api.h src/core/unit_testing_api.h src/core/unused_api.h src/core/version_api.h src/core/versionfunc_api.h src/core/warning_api.h src/core/xansi_api.h src/core/xposix_api.h src/core/yarandom_api.h src/extended/add_introns_stream_api.h src/extended/anno_db_gfflike_api.h src/extended/anno_db_schema_api.h src/extended/array_in_stream_api.h src/extended/array_out_stream_api.h src/extended/bed_in_stream_api.h src/extended/buffer_stream_api.h src/extended/cds_stream_api.h src/extended/cds_visitor_api.h src/extended/chain_api.h src/extended/check_boundaries_visitor_api.h src/extended/comment_node_api.h src/extended/consensus_sa_api.h src/extended/csa_stream_api.h src/extended/dup_feature_stream_api.h src/extended/eof_node_api.h src/extended/extract_feature_stream_api.h src/extended/feature_in_stream_api.h src/extended/feature_index_api.h src/extended/feature_index_memory_api.h src/extended/feature_node_api.h src/extended/feature_node_iterator_api.h src/extended/feature_out_stream_api.h src/extended/feature_stream_api.h src/extended/feature_type_api.h src/extended/genome_node_api.h src/extended/gff3_escaping_api.h src/extended/gff3_in_stream_api.h src/extended/gff3_out_stream_api.h src/extended/gff3_parser_api.h src/extended/gff3_visitor_api.h src/extended/globalchaining_api.h src/extended/gtf_in_stream_api.h src/extended/gtf_out_stream_api.h src/extended/id_to_md5_stream_api.h src/extended/inter_feature_stream_api.h src/extended/match_api.h src/extended/match_blast_api.h src/extended/match_iterator_api.h src/extended/match_last_api.h src/extended/match_open_api.h src/extended/match_sw_api.h src/extended/match_visitor_api.h src/extended/md5_to_id_stream_api.h src/extended/merge_feature_stream_api.h src/extended/merge_stream_api.h src/extended/meta_node_api.h src/extended/node_stream_api.h src/extended/node_visitor_api.h src/extended/orf_iterator_api.h src/extended/rbtree_api.h src/extended/rdb_api.h src/extended/rdb_mysql_api.h src/extended/rdb_sqlite_api.h src/extended/rdb_visitor_api.h src/extended/region_mapping_api.h src/extended/region_node_api.h src/extended/regular_seqid_api.h src/extended/reverse_api.h src/extended/script_filter_api.h src/extended/script_wrapper_stream_api.h src/extended/script_wrapper_visitor_api.h src/extended/select_stream_api.h src/extended/seqid2file_api.h src/extended/sequence_node_api.h src/extended/set_source_visitor_api.h src/extended/sort_stream_api.h src/extended/splice_site_info_stream_api.h src/extended/stat_stream_api.h src/extended/tag_value_map_api.h src/extended/type_checker_api.h src/extended/type_checker_builtin_api.h src/extended/type_checker_obo_api.h src/extended/uniq_stream_api.h src/extended/visitor_stream_api.h src/extended/xrf_checker_api.h src/ltr/ltr_classify_stream_api.h src/ltr/ltr_cluster_stream_api.h src/ltr/ltr_orf_annotator_stream_api.h src/ltr/ltr_refseq_match_stream_api.h src/annotationsketch/block_api.h src/annotationsketch/canvas_api.h src/annotationsketch/canvas_cairo_context_api.h src/annotationsketch/canvas_cairo_file_api.h src/annotationsketch/color_api.h src/annotationsketch/custom_track_api.h src/annotationsketch/custom_track_gc_content_api.h src/annotationsketch/custom_track_script_wrapper_api.h src/annotationsketch/diagram_api.h src/annotationsketch/feature_index_api.h src/annotationsketch/feature_index_memory_api.h src/annotationsketch/feature_stream_api.h src/annotationsketch/graphics_api.h src/annotationsketch/graphics_cairo_api.h src/annotationsketch/image_info_api.h src/annotationsketch/layout_api.h src/annotationsketch/rec_map_api.h src/annotationsketch/style_api.h src/annotationsketch/text_width_calculator_api.h src/annotationsketch/text_width_calculator_cairo_api.h | tr ' ' '\n' \ | grep -E '^(gt_[0-9a-zA-Z_]+)(\[|\()' \ | cut -d'[' -f1 | cut -d'(' -f1 | sort | uniq > obj/public_symbols.lst.src +test -d obj/src || mkdir -p obj/src +cc -c src/gt.c -o obj/src/gt.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/gt.c -o obj/src/gt.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gt.o cat src/core/alphabet.c src/core/array.c src/core/array2dim.c src/core/array2dim_sparse.c src/core/array3dim.c src/core/basename.c src/core/bioseq.c src/core/bioseq_col.c src/core/bioseq_iterator.c src/core/bitbuffer.c src/core/bitpackstringop.c src/core/bitpackstringop16.c src/core/bitpackstringop32.c src/core/bitpackstringop64.c src/core/bitpackstringop8.c src/core/bittab.c src/core/bool_matrix.c src/core/bsearch.c src/core/byte_popcount.c src/core/byte_select.c src/core/checkbitpackarray.c src/core/checkbitpackstring-int.c src/core/checkbitpackstring.c src/core/checkbitpackstring16.c src/core/checkbitpackstring32.c src/core/checkbitpackstring64.c src/core/checkbitpackstring8.c src/core/class_alloc.c src/core/class_alloc_lock.c src/core/codon_iterator.c src/core/codon_iterator_encseq.c src/core/codon_iterator_simple.c src/core/colorspace.c src/core/combinatorics.c src/core/compact_ulong_store.c src/core/compat.c src/core/complement.c src/core/countingsort.c src/core/cstr.c src/core/cstr_array.c src/core/cstr_table.c src/core/csvline_reader.c src/core/desc_buffer.c src/core/disc_distri.c src/core/dlist.c src/core/dual-pivot-qsort.c src/core/dyn_bittab.c src/core/dynalloc.c src/core/eansi.c src/core/ebzlib.c src/core/encseq.c src/core/encseq_access_type.c src/core/encseq_col.c src/core/encseq_metadata.c src/core/encseq_options.c src/core/encseq_ptr.c src/core/endianess.c src/core/error.c src/core/example.c src/core/example_a.c src/core/example_b.c src/core/ezlib.c src/core/fa.c src/core/fasta.c src/core/fasta_reader.c src/core/fasta_reader_fsm.c src/core/fasta_reader_rec.c src/core/fasta_reader_seqit.c src/core/fastq.c src/core/file.c src/core/fileutils.c src/core/gc_content.c src/core/grep.c src/core/gtdatapath.c src/core/hashmap.c src/core/hashtable.c src/core/init.c src/core/interval_tree.c src/core/io.c src/core/log.c src/core/logger.c src/core/ma.c src/core/mapspec.c src/core/mathsupport.c src/core/md5_encoder.c src/core/md5_fingerprint.c src/core/md5_seqid.c src/core/md5_tab.c src/core/msort.c src/core/multithread.c src/core/option.c src/core/orf.c src/core/output_file.c src/core/parseutils.c src/core/password_entry.c src/core/phase.c src/core/process.c src/core/progressbar.c src/core/qsort-ulong.c src/core/qsort_r.c src/core/quality.c src/core/queue.c src/core/radix_sort.c src/core/range.c src/core/readmode.c src/core/safearith.c src/core/score_function.c src/core/score_matrix.c src/core/seq.c src/core/seq_col.c src/core/seq_info_cache.c src/core/seq_iterator.c src/core/seq_iterator_fastq.c src/core/seq_iterator_sequence_buffer.c src/core/sequence_buffer.c src/core/sequence_buffer_dust.c src/core/sequence_buffer_embl.c src/core/sequence_buffer_fasta.c src/core/sequence_buffer_fastq.c src/core/sequence_buffer_gb.c src/core/sequence_buffer_plain.c src/core/showtime.c src/core/sig.c src/core/spacepeak.c src/core/splitter.c src/core/str.c src/core/str_array.c src/core/str_cache.c src/core/strand.c src/core/strcmp.c src/core/string_distri.c src/core/symbol.c src/core/thread.c src/core/timer.c src/core/tokenizer.c src/core/tool.c src/core/tool_iterator.c src/core/toolbox.c src/core/tooldriver.c src/core/trans_table.c src/core/translator.c src/core/unit_testing.c src/core/version.c src/core/versionfunc.c src/core/warning.c src/core/xansi.c src/core/xbsd.c src/core/xbzlib.c src/core/xposix.c src/core/xzlib.c src/core/yarandom.c src/extended/add_ids_stream.c src/extended/add_ids_visitor.c src/extended/add_introns_stream.c src/extended/affinealign.c src/extended/aligned_segment.c src/extended/aligned_segments_pile.c src/extended/alignment.c src/extended/anno_db_gfflike.c src/extended/anno_db_schema.c src/extended/array_in_stream.c src/extended/array_out_stream.c src/extended/assembly_stats_calculator.c src/extended/bed_in_stream.c src/extended/bed_parser.c src/extended/bitinstream.c src/extended/bitoutstream.c src/extended/blast_process_call.c src/extended/buffer_stream.c src/extended/cds_check_stream.c src/extended/cds_check_visitor.c src/extended/cds_stream.c src/extended/cds_visitor.c src/extended/chain.c src/extended/check_boundaries_visitor.c src/extended/chseqids_stream.c src/extended/clustered_set.c src/extended/clustered_set_uf.c src/extended/coin_hmm.c src/extended/collect_ids_visitor.c src/extended/comment_node.c src/extended/compressed_bitsequence.c src/extended/condenseq.c src/extended/condenseq_creator.c src/extended/condenseq_search_arguments.c src/extended/consensus_sa.c src/extended/csa_gene.c src/extended/csa_splice_form.c src/extended/csa_stream.c src/extended/csa_variable_strands.c src/extended/csa_visitor.c src/extended/cstr_iterator.c src/extended/diagonalbandalign.c src/extended/diagonalbandalign_affinegapcost.c src/extended/dice_hmm.c src/extended/dot_out_stream.c src/extended/dot_visitor.c src/extended/dup_feature_stream.c src/extended/dup_feature_visitor.c src/extended/editscript.c src/extended/elias_gamma.c src/extended/encdesc.c src/extended/encdesc_header_io.c src/extended/eof_node.c src/extended/evaluator.c src/extended/extract_feature_sequence.c src/extended/extract_feature_stream.c src/extended/extract_feature_visitor.c src/extended/fasta_header_iterator.c src/extended/feature_in_stream.c src/extended/feature_index.c src/extended/feature_index_memory.c src/extended/feature_info.c src/extended/feature_node.c src/extended/feature_node_iterator.c src/extended/feature_node_observer.c src/extended/feature_out_stream.c src/extended/feature_stream.c src/extended/feature_visitor.c src/extended/gap_str.c src/extended/genome_node.c src/extended/gff3_escaping.c src/extended/gff3_in_stream.c src/extended/gff3_in_stream_plain.c src/extended/gff3_linesorted_out_stream.c src/extended/gff3_numsorted_out_stream.c src/extended/gff3_out_stream.c src/extended/gff3_output.c src/extended/gff3_parser.c src/extended/gff3_visitor.c src/extended/globalchaining.c src/extended/golomb.c src/extended/gtdatahelp.c src/extended/gtf_in_stream.c src/extended/gtf_out_stream.c src/extended/gtf_parser.c src/extended/gtf_visitor.c src/extended/hcr.c src/extended/hmm.c src/extended/hpol_processor.c src/extended/huffcode.c src/extended/id_to_md5_stream.c src/extended/id_to_md5_visitor.c src/extended/inter_feature_stream.c src/extended/inter_feature_visitor.c src/extended/intset.c src/extended/intset_16.c src/extended/intset_32.c src/extended/intset_8.c src/extended/intset_combined.c src/extended/io_function_pointers.c src/extended/kmer_database.c src/extended/linearalign.c src/extended/linearalign_affinegapcost.c src/extended/linspace_management.c src/extended/load_stream.c src/extended/luahelper.c src/extended/luaserialize.c src/extended/mapping.c src/extended/match.c src/extended/match_blast.c src/extended/match_iterator.c src/extended/match_iterator_blast.c src/extended/match_iterator_last.c src/extended/match_iterator_open.c src/extended/match_iterator_sw.c src/extended/match_last.c src/extended/match_open.c src/extended/match_sw.c src/extended/match_visitor.c src/extended/maxcoordvalue.c src/extended/md5_to_id_stream.c src/extended/md5_to_id_visitor.c src/extended/md5set.c src/extended/merge_feature_stream.c src/extended/merge_feature_visitor.c src/extended/merge_stream.c src/extended/meta_node.c src/extended/multi_sanitizer_visitor.c src/extended/multieoplist.c src/extended/mutate.c src/extended/node_stream.c src/extended/node_visitor.c src/extended/obo_parse_tree.c src/extended/obo_stanza.c src/extended/orf_finder_stream.c src/extended/orf_finder_visitor.c src/extended/orf_iterator.c src/extended/orphanage.c src/extended/permute_words.c src/extended/popcount_tab.c src/extended/priority_queue.c src/extended/ranked_list.c src/extended/rbtree.c src/extended/rcr.c src/extended/rdb.c src/extended/rdb_sqlite.c src/extended/rdb_visitor.c src/extended/reconstructalignment.c src/extended/region_mapping.c src/extended/region_node.c src/extended/region_node_builder.c src/extended/regioncov_visitor.c src/extended/regular_seqid.c src/extended/reverse.c src/extended/rmq.c src/extended/safe_popen.c src/extended/sam_alignment.c src/extended/sam_query_name_iterator.c src/extended/samfile_encseq_mapping.c src/extended/samfile_iterator.c src/extended/sampling.c src/extended/scorehandler.c src/extended/script_filter.c src/extended/script_wrapper_stream.c src/extended/script_wrapper_visitor.c src/extended/select_stream.c src/extended/select_visitor.c src/extended/seqid2file.c src/extended/seqid2seqnum_mapping.c src/extended/seqpos_classifier.c src/extended/sequence_node.c src/extended/sequence_node_add_stream.c src/extended/sequence_node_out_stream.c src/extended/sequence_node_out_visitor.c src/extended/set_source_visitor.c src/extended/shredder.c src/extended/snp_annotator_stream.c src/extended/snp_annotator_visitor.c src/extended/sort_stream.c src/extended/spec_results.c src/extended/spec_visitor.c src/extended/splice_site_info_stream.c src/extended/splice_site_info_visitor.c src/extended/splicedseq.c src/extended/squarealign.c src/extended/sspliced_alignment.c src/extended/sspliced_alignment_parsing.c src/extended/stat_stream.c src/extended/stat_visitor.c src/extended/stream_evaluator.c src/extended/string_matching.c src/extended/swalign.c src/extended/tag_value_map.c src/extended/targetbest_select_stream.c src/extended/tidy_region_node_stream.c src/extended/tidy_region_node_visitor.c src/extended/tir_stream.c src/extended/transcript_bittabs.c src/extended/transcript_counts.c src/extended/transcript_evaluators.c src/extended/transcript_exons.c src/extended/transcript_used_exons.c src/extended/type_checker.c src/extended/type_checker_builtin.c src/extended/type_checker_obo.c src/extended/type_graph.c src/extended/type_node.c src/extended/typecheck_info.c src/extended/uint64hashtable.c src/extended/union_find.c src/extended/uniq_stream.c src/extended/visitor_stream.c src/extended/wtree.c src/extended/wtree_encseq.c src/extended/xrf_abbr_entry.c src/extended/xrf_abbr_parse_tree.c src/extended/xrf_checker.c src/extended/xrfcheck_info.c src/gtlua/alphabet_lua.c src/gtlua/annotationsketch_lua.c src/gtlua/bittab_lua.c src/gtlua/canvas_lua.c src/gtlua/cds_stream_lua.c src/gtlua/csa_stream_lua.c src/gtlua/diagram_lua.c src/gtlua/encseq_lua.c src/gtlua/feature_index_lua.c src/gtlua/feature_node_iterator_lua.c src/gtlua/feature_stream_lua.c src/gtlua/feature_visitor_lua.c src/gtlua/genome_node_lua.c src/gtlua/genome_stream_lua.c src/gtlua/genome_visitor_lua.c src/gtlua/gt_lua.c src/gtlua/gtcore_lua.c src/gtlua/gtext_lua.c src/gtlua/image_info_lua.c src/gtlua/layout_lua.c src/gtlua/mathsupport_lua.c src/gtlua/range_lua.c src/gtlua/region_mapping_lua.c src/gtlua/score_matrix_lua.c src/gtlua/stream_evaluator_lua.c src/gtlua/translate_lua.c src/match/apmeoveridx.c src/match/asqg_writer.c src/match/bare-encseq.c src/match/bcktab.c src/match/cgr_spacedseed.c src/match/chain2dim.c src/match/chainofin.c src/match/cutendpfx.c src/match/dbs_spaced_seeds.c src/match/diagband-struct.c src/match/diagbandseed.c src/match/dist-short.c src/match/echoseq.c src/match/eis-blockcomp-param.c src/match/eis-blockcomp.c src/match/eis-bwtseq-construct.c src/match/eis-bwtseq-context-param.c src/match/eis-bwtseq-context.c src/match/eis-bwtseq-extinfo.c src/match/eis-bwtseq-param.c src/match/eis-bwtseq-sass.c src/match/eis-bwtseq.c src/match/eis-encidxseq-construct.c src/match/eis-encidxseq-param.c src/match/eis-encidxseq.c src/match/eis-mrangealphabet.c src/match/eis-sa-common.c src/match/eis-seqblocktranslate.c src/match/eis-seqranges.c src/match/eis-sequencemultiread.c src/match/eis-specialsrank.c src/match/eis-suffixarray-interface.c src/match/eis-suffixerator-interface.c src/match/eis-voiditf.c src/match/encseq2offset.c src/match/enum-patt.c src/match/esa-bottomup.c src/match/esa-dfs.c src/match/esa-lcpintervals.c src/match/esa-map.c src/match/esa-maxpairs.c src/match/esa-merge.c src/match/esa-minunique.c src/match/esa-mmsearch.c src/match/esa-scanprj.c src/match/esa-seqread.c src/match/esa-shulen.c src/match/esa-splititv-simple.c src/match/esa-splititv.c src/match/esa-spmitvs.c src/match/esa-spmsk.c src/match/esa_lcpintervals_visitor.c src/match/esa_spmitvs_visitor.c src/match/esa_visitor.c src/match/firstcodes-accum.c src/match/firstcodes-cache.c src/match/firstcodes-insert.c src/match/firstcodes-psbuf.c src/match/firstcodes-scan.c src/match/firstcodes-spacelog.c src/match/firstcodes-tab.c src/match/firstcodes.c src/match/fmi-fwduni.c src/match/fmi-keyval.c src/match/fmi-locate.c src/match/fmi-map.c src/match/fmi-mapspec.c src/match/fmi-mkindex.c src/match/fmi-save.c src/match/fmi-sufbwtstream.c src/match/ft-eoplist.c src/match/ft-front-generation.c src/match/ft-front-prune.c src/match/ft-polish.c src/match/ft-trimstat.c src/match/gfa_writer.c src/match/giextract.c src/match/greedyedist.c src/match/greedyfwdmat.c src/match/hashfirstcodes.c src/match/hlk-version.c src/match/hplstore.c src/match/idx-limdfs.c src/match/idxlocali.c src/match/idxlocalidp.c src/match/idxlocalisw.c src/match/index_options.c src/match/initbasepower.c src/match/initeqsvec.c src/match/iter-window.c src/match/karlin_altschul_stat.c src/match/kmer2string.c src/match/lua_tools.c src/match/marksubstring.c src/match/merger-trie.c src/match/mssufpat.c src/match/myersapm.c src/match/nullcols.c src/match/optionargmode.c src/match/pck-count-nodes.c src/match/pckbucket.c src/match/pckdfs.c src/match/prsqualint.c src/match/pssm.c src/match/querymatch-align.c src/match/querymatch-display.c src/match/querymatch.c src/match/radixsort_str.c src/match/randomcodes-correct.c src/match/randomcodes-find-seldom.c src/match/randomcodes-hpcorrect.c src/match/randomcodes-insert.c src/match/randomcodes-sfx-partssuf.c src/match/randomcodes-tab.c src/match/randomcodes.c src/match/rdj-cntlist.c src/match/rdj-contfind-bottomup.c src/match/rdj-contfinder.c src/match/rdj-contigpaths.c src/match/rdj-contigs-graph.c src/match/rdj-contigs-writer.c src/match/rdj-errfind.c src/match/rdj-ovlfind-bf.c src/match/rdj-ovlfind-dp.c src/match/rdj-ovlfind-gusfield.c src/match/rdj-ovlfind-kmp.c src/match/rdj-pairwise.c src/match/rdj-spmfind.c src/match/rdj-spmlist.c src/match/rdj-spmproc.c src/match/rdj-strgraph.c src/match/rdj-twobitenc-editor.c src/match/rdj-version.c src/match/reads2twobit.c src/match/reads_libraries_table.c src/match/rectangle-store.c src/match/revcompl.c src/match/seed-extend-iter.c src/match/seed-extend.c src/match/seed_extend_parts.c src/match/seqabstract.c src/match/seqnumrelpos.c src/match/sfx-apfxlen.c src/match/sfx-bentsedg.c src/match/sfx-bltrie.c src/match/sfx-copysort.c src/match/sfx-diffcov.c src/match/sfx-enumcodes.c src/match/sfx-lcpvalues.c src/match/sfx-linlcp.c src/match/sfx-lwcheck.c src/match/sfx-mappedstr.c src/match/sfx-maprange.c src/match/sfx-opt.c src/match/sfx-outprj.c src/match/sfx-partssuf.c src/match/sfx-radixsort.c src/match/sfx-run.c src/match/sfx-sain.c src/match/sfx-shortreadsort.c src/match/sfx-suffixer.c src/match/sfx-suffixgetset.c src/match/sfx-suftaborder.c src/match/shu-dfs.c src/match/shu-divergence.c src/match/shu-encseq-gc.c src/match/shu-genomediff.c src/match/shu_unitfile.c src/match/spaced-seeds.c src/match/specialrank.c src/match/spmsuftab.c src/match/squarededist.c src/match/substriter.c src/match/tagerator.c src/match/test-mappedstr.c src/match/test-maxpairs.c src/match/test-mergeesa.c src/match/test-mtrieins.c src/match/test-pairwise.c src/match/turnwheels.c src/match/twobits2kmers.c src/match/tyr-map.c src/match/tyr-mersplit.c src/match/tyr-mkindex.c src/match/tyr-occratio.c src/match/tyr-search.c src/match/xdrop.c src/ltr/gt_ltrclustering.c src/ltr/gt_ltrdigest.c src/ltr/gt_ltrharvest.c src/ltr/ltr_classify_stream.c src/ltr/ltr_cluster_prepare_seq_visitor.c src/ltr/ltr_cluster_stream.c src/ltr/ltr_four_char_motif.c src/ltr/ltr_input_check_visitor.c src/ltr/ltr_orf_annotator_stream.c src/ltr/ltr_refseq_match_stream.c src/ltr/ltrdigest_file_out_stream.c src/ltr/ltrdigest_pbs_visitor.c src/ltr/ltrdigest_pdom_visitor.c src/ltr/ltrdigest_ppt_visitor.c src/ltr/ltrdigest_strand_assign_visitor.c src/ltr/ltrharvest_fasta_out_stream.c src/ltr/ltrharvest_fasta_out_visitor.c src/ltr/ltrharvest_stream.c src/ltr/ltrharvest_tabout_stream.c src/ltr/ltrharvest_tabout_visitor.c src/ltr/pdom_model_set.c src/mgth/metagenomethreader.c src/mgth/mg_codon.c src/mgth/mg_combinedscore.c src/mgth/mg_compute_gene_prediction.c src/mgth/mg_computepath.c src/mgth/mg_outputwriter.c src/mgth/mg_reverse.c src/mgth/mg_xmlparser.c src/annotationsketch/block.c src/annotationsketch/canvas.c src/annotationsketch/canvas_cairo.c src/annotationsketch/canvas_cairo_context.c src/annotationsketch/canvas_cairo_file.c src/annotationsketch/color.c src/annotationsketch/coords.c src/annotationsketch/custom_track.c src/annotationsketch/custom_track_example.c src/annotationsketch/custom_track_gc_content.c src/annotationsketch/custom_track_script_wrapper.c src/annotationsketch/diagram.c src/annotationsketch/drawing_range.c src/annotationsketch/element.c src/annotationsketch/graphics.c src/annotationsketch/graphics_cairo.c src/annotationsketch/gt_sketch.c src/annotationsketch/gt_sketch_page.c src/annotationsketch/image_info.c src/annotationsketch/layout.c src/annotationsketch/line.c src/annotationsketch/line_breaker.c src/annotationsketch/line_breaker_bases.c src/annotationsketch/line_breaker_captions.c src/annotationsketch/luastyle.c src/annotationsketch/rec_map.c src/annotationsketch/style.c src/annotationsketch/text_width_calculator.c src/annotationsketch/text_width_calculator_cairo.c src/annotationsketch/track.c | tr ' ' '\n' \ | grep -E '(gt_[0-9a-zA-Z_]+_p)(\[|\()' \ | cut -d'(' -f1 >> obj/public_symbols.lst.src -cc -c src/annotationsketch/graphics_cairo.c -o obj/src/annotationsketch/graphics_cairo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/graphics_cairo.o -cc -c src/annotationsketch/text_width_calculator.c -o obj/src/annotationsketch/text_width_calculator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/text_width_calculator.o +test -d obj/src || mkdir -p obj/src +cc -c src/gtr.c -o obj/src/gtr.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 for L in `cat obj/public_symbols.lst.src`; do \ printf "\t\t$L;\n" >> obj/public_symbols.lst; \ done; @@ -3656,401 +3697,396 @@ printf "\t\tgt_str_get_mem;\n" >> obj/public_symbols.lst printf '\tlocal: *;\n\t};\n' >> obj/public_symbols.lst test -d obj/src || mkdir -p obj/src -test -d obj/src || mkdir -p obj/src -cc -c src/gt.c -o obj/src/gt.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/gtr.c -o obj/src/gtr.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src || mkdir -p obj/src cc -c src/gtt.c -o obj/src/gtt.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/annotationsketch/text_width_calculator_cairo.c -o obj/src/annotationsketch/text_width_calculator_cairo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/text_width_calculator_cairo.o -cc -c src/gt.c -o obj/src/gt.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gt.o test -d obj/src || mkdir -p obj/src cc -c src/interactive.c -o obj/src/interactive.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/annotationsketch/track.c -o obj/src/annotationsketch/track.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/track.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_bed_to_gff3.c -o obj/src/tools/gt_bed_to_gff3.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_bed_to_gff3.c -o obj/src/tools/gt_bed_to_gff3.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_bed_to_gff3.o cc -c src/gtt.c -o obj/src/gtt.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtt.o -cc -c src/interactive.c -o obj/src/interactive.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/interactive.o +cc -c src/tools/gt_bed_to_gff3.c -o obj/src/tools/gt_bed_to_gff3.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_bed_to_gff3.o +cc -c src/gtr.c -o obj/src/gtr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtr.o +cc -c src/annotationsketch/style.c -o obj/src/annotationsketch/style.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/style.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_cds.c -o obj/src/tools/gt_cds.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/annotationsketch/track.c -o obj/src/annotationsketch/track.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/track.o +cc -c src/interactive.c -o obj/src/interactive.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/interactive.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_chain2dim.c -o obj/src/tools/gt_chain2dim.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_chseqids.c -o obj/src/tools/gt_chseqids.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/annotationsketch/style.c -o obj/src/annotationsketch/style.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/style.o test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/gtr.c -o obj/src/gtr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtr.o cc -c src/tools/gt_clean.c -o obj/src/tools/gt_clean.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_compreads.c -o obj/src/tools/gt_compreads.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_cds.c -o obj/src/tools/gt_cds.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_cds.o test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_chseqids.c -o obj/src/tools/gt_chseqids.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_chseqids.o cc -c src/tools/gt_compreads_compress.c -o obj/src/tools/gt_compreads_compress.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_compreads.c -o obj/src/tools/gt_compreads.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_compreads.o +cc -c src/tools/gt_chseqids.c -o obj/src/tools/gt_chseqids.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_chseqids.o +cc -c src/tools/gt_chain2dim.c -o obj/src/tools/gt_chain2dim.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_chain2dim.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_compreads_decompress.c -o obj/src/tools/gt_compreads_decompress.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_clean.c -o obj/src/tools/gt_clean.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_clean.o -cc -c src/tools/gt_compreads.c -o obj/src/tools/gt_compreads.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_compreads.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_compreads_refcompress.c -o obj/src/tools/gt_compreads_refcompress.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_compreads_refdecompress.c -o obj/src/tools/gt_compreads_refdecompress.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_compreads_compress.c -o obj/src/tools/gt_compreads_compress.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_compreads_compress.o +cc -c src/tools/gt_compreads_decompress.c -o obj/src/tools/gt_compreads_decompress.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_compreads_decompress.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_compressedbits.c -o obj/src/tools/gt_compressedbits.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_chain2dim.c -o obj/src/tools/gt_chain2dim.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_chain2dim.o test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_clean.c -o obj/src/tools/gt_clean.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_clean.o cc -c src/tools/gt_condenseq.c -o obj/src/tools/gt_condenseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_compreads_refdecompress.c -o obj/src/tools/gt_compreads_refdecompress.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_compreads_refdecompress.o -cc -c src/tools/gt_compreads_compress.c -o obj/src/tools/gt_compreads_compress.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_compreads_compress.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_condenseq_blast.c -o obj/src/tools/gt_condenseq_blast.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_compreads_decompress.c -o obj/src/tools/gt_compreads_decompress.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_compreads_decompress.o +cc -c src/tools/gt_condenseq.c -o obj/src/tools/gt_condenseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_condenseq.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_condenseq_compress.c -o obj/src/tools/gt_condenseq_compress.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_condenseq.c -o obj/src/tools/gt_condenseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_condenseq.o -cc -c src/tools/gt_compreads_refcompress.c -o obj/src/tools/gt_compreads_refcompress.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_compreads_refcompress.o +cc -c src/tools/gt_compreads_refdecompress.c -o obj/src/tools/gt_compreads_refdecompress.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_compreads_refdecompress.o cc -c src/tools/gt_compressedbits.c -o obj/src/tools/gt_compressedbits.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_compressedbits.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_condenseq_extract.c -o obj/src/tools/gt_condenseq_extract.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_compreads_refcompress.c -o obj/src/tools/gt_compreads_refcompress.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_compreads_refcompress.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_condenseq_hmmsearch.c -o obj/src/tools/gt_condenseq_hmmsearch.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_condenseq_info.c -o obj/src/tools/gt_condenseq_info.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_condenseq_compress.c -o obj/src/tools/gt_condenseq_compress.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_condenseq_compress.o +cc -c src/tools/gt_condenseq_extract.c -o obj/src/tools/gt_condenseq_extract.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_condenseq_extract.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_condenseq_search.c -o obj/src/tools/gt_condenseq_search.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_condenseq_info.c -o obj/src/tools/gt_condenseq_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_condenseq_info.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_congruence.c -o obj/src/tools/gt_congruence.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_condenseq_search.c -o obj/src/tools/gt_condenseq_search.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_condenseq_search.o -cc -c src/tools/gt_condenseq_compress.c -o obj/src/tools/gt_condenseq_compress.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_condenseq_compress.o -cc -c src/tools/gt_condenseq_extract.c -o obj/src/tools/gt_condenseq_extract.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_condenseq_extract.o +cc -c src/tools/gt_condenseq_info.c -o obj/src/tools/gt_condenseq_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_condenseq_info.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_consensus_sa.c -o obj/src/tools/gt_consensus_sa.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_condenseq_blast.c -o obj/src/tools/gt_condenseq_blast.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_condenseq_blast.o +cc -c src/tools/gt_congruence.c -o obj/src/tools/gt_congruence.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_congruence.o +cc -c src/tools/gt_condenseq_search.c -o obj/src/tools/gt_condenseq_search.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_condenseq_search.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_convertseq.c -o obj/src/tools/gt_convertseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_csa.c -o obj/src/tools/gt_csa.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_condenseq_blast.c -o obj/src/tools/gt_condenseq_blast.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_condenseq_blast.o cc -c src/tools/gt_condenseq_hmmsearch.c -o obj/src/tools/gt_condenseq_hmmsearch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_condenseq_hmmsearch.o -cc -c src/tools/gt_congruence.c -o obj/src/tools/gt_congruence.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_congruence.o -cc -c src/tools/gt_csa.c -o obj/src/tools/gt_csa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_csa.o cc -c src/tools/gt_consensus_sa.c -o obj/src/tools/gt_consensus_sa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_consensus_sa.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_dev.c -o obj/src/tools/gt_dev.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_csa.c -o obj/src/tools/gt_csa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_csa.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_dot.c -o obj/src/tools/gt_dot.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_dupfeat.c -o obj/src/tools/gt_dupfeat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_encseq.c -o obj/src/tools/gt_encseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_dev.c -o obj/src/tools/gt_dev.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_dev.o cc -c src/tools/gt_convertseq.c -o obj/src/tools/gt_convertseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_convertseq.o -cc -c src/tools/gt_encseq2spm.c -o obj/src/tools/gt_encseq2spm.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_encseq_bench.c -o obj/src/tools/gt_encseq_bench.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_dot.c -o obj/src/tools/gt_dot.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_dot.o cc -c src/tools/gt_dupfeat.c -o obj/src/tools/gt_dupfeat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_dupfeat.o cc -c src/tools/gt_encseq.c -o obj/src/tools/gt_encseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq.o -cc -c src/tools/gt_dev.c -o obj/src/tools/gt_dev.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_dev.o test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_encseq2spm.c -o obj/src/tools/gt_encseq2spm.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_encseq_bench.c -o obj/src/tools/gt_encseq_bench.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_encseq_bitextract.c -o obj/src/tools/gt_encseq_bitextract.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_encseq_check.c -o obj/src/tools/gt_encseq_check.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_encseq_decode.c -o obj/src/tools/gt_encseq_decode.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_encseq_bench.c -o obj/src/tools/gt_encseq_bench.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_bench.o +cc -c src/tools/gt_encseq2spm.c -o obj/src/tools/gt_encseq2spm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq2spm.o +cc -c src/tools/gt_encseq_check.c -o obj/src/tools/gt_encseq_check.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_check.o +cc -c src/tools/gt_encseq_bitextract.c -o obj/src/tools/gt_encseq_bitextract.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_bitextract.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_encseq_encode.c -o obj/src/tools/gt_encseq_encode.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_encseq_check.c -o obj/src/tools/gt_encseq_check.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_check.o -cc -c src/tools/gt_encseq2spm.c -o obj/src/tools/gt_encseq2spm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq2spm.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_encseq_info.c -o obj/src/tools/gt_encseq_info.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools +test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_encseq_md5.c -o obj/src/tools/gt_encseq_md5.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_encseq_bitextract.c -o obj/src/tools/gt_encseq_bitextract.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_bitextract.o -cc -c src/tools/gt_encseq_bench.c -o obj/src/tools/gt_encseq_bench.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_bench.o -cc -c src/tools/gt_encseq_encode.c -o obj/src/tools/gt_encseq_encode.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_encode.o +cc -c src/tools/gt_encseq_sample.c -o obj/src/tools/gt_encseq_sample.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_encseq_decode.c -o obj/src/tools/gt_encseq_decode.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_decode.o -cc -c src/tools/gt_encseq_md5.c -o obj/src/tools/gt_encseq_md5.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_md5.o test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_eval.c -o obj/src/tools/gt_eval.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_encseq_encode.c -o obj/src/tools/gt_encseq_encode.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_encode.o +cc -c src/tools/gt_eval.c -o obj/src/tools/gt_eval.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_eval.o +cc -c src/tools/gt_encseq_md5.c -o obj/src/tools/gt_encseq_md5.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_md5.o +cc -c src/tools/gt_encseq_sample.c -o obj/src/tools/gt_encseq_sample.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_sample.o test -d obj/src/tools || mkdir -p obj/src/tools test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_encseq_sample.c -o obj/src/tools/gt_encseq_sample.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_extractfeat.c -o obj/src/tools/gt_extractfeat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_eval.c -o obj/src/tools/gt_eval.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_extractseq.c -o obj/src/tools/gt_extractseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_extractfeat.c -o obj/src/tools/gt_extractfeat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_encseq_info.c -o obj/src/tools/gt_encseq_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_info.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_extracttarget.c -o obj/src/tools/gt_extracttarget.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_encseq_info.c -o obj/src/tools/gt_encseq_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_info.o -cc -c src/tools/gt_eval.c -o obj/src/tools/gt_eval.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_eval.o -cc -c src/tools/gt_extractfeat.c -o obj/src/tools/gt_extractfeat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_extractfeat.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_fastq_sample.c -o obj/src/tools/gt_fastq_sample.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_extractfeat.c -o obj/src/tools/gt_extractfeat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_extractfeat.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_featureindex.c -o obj/src/tools/gt_featureindex.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_fingerprint.c -o obj/src/tools/gt_fingerprint.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_extracttarget.c -o obj/src/tools/gt_extracttarget.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_extracttarget.o cc -c src/tools/gt_extractseq.c -o obj/src/tools/gt_extractseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_extractseq.o test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_fingerprint.c -o obj/src/tools/gt_fingerprint.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_gdiffcalc.c -o obj/src/tools/gt_gdiffcalc.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_encseq_sample.c -o obj/src/tools/gt_encseq_sample.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_sample.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_genomediff.c -o obj/src/tools/gt_genomediff.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_gff3.c -o obj/src/tools/gt_gff3.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_fastq_sample.c -o obj/src/tools/gt_fastq_sample.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_fastq_sample.o cc -c src/tools/gt_featureindex.c -o obj/src/tools/gt_featureindex.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_featureindex.o +cc -c src/tools/gt_fastq_sample.c -o obj/src/tools/gt_fastq_sample.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_fastq_sample.o test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_gff3.c -o obj/src/tools/gt_gff3.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_gff3_to_gtf.c -o obj/src/tools/gt_gff3_to_gtf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_gff3validator.c -o obj/src/tools/gt_gff3validator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_gff3_to_gtf.c -o obj/src/tools/gt_gff3_to_gtf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_gff3_to_gtf.o -cc -c src/tools/gt_gff3validator.c -o obj/src/tools/gt_gff3validator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_gff3validator.o +cc -c src/tools/gt_gdiffcalc.c -o obj/src/tools/gt_gdiffcalc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_gdiffcalc.o +cc -c src/tools/gt_genomediff.c -o obj/src/tools/gt_genomediff.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_genomediff.o +cc -c src/tools/gt_gff3.c -o obj/src/tools/gt_gff3.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_gff3.o cc -c src/tools/gt_fingerprint.c -o obj/src/tools/gt_fingerprint.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_fingerprint.o +cc -c src/tools/gt_gff3_to_gtf.c -o obj/src/tools/gt_gff3_to_gtf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_gff3_to_gtf.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_gtf_to_gff3.c -o obj/src/tools/gt_gtf_to_gff3.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_gff3.c -o obj/src/tools/gt_gff3.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_gff3.o +test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_gff3validator.c -o obj/src/tools/gt_gff3validator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_guessprot.c -o obj/src/tools/gt_guessprot.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_hop.c -o obj/src/tools/gt_hop.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_gdiffcalc.c -o obj/src/tools/gt_gdiffcalc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_gdiffcalc.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_id_to_md5.c -o obj/src/tools/gt_id_to_md5.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_genomediff.c -o obj/src/tools/gt_genomediff.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_genomediff.o +cc -c src/tools/gt_guessprot.c -o obj/src/tools/gt_guessprot.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_guessprot.o cc -c src/tools/gt_gtf_to_gff3.c -o obj/src/tools/gt_gtf_to_gff3.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_gtf_to_gff3.o +cc -c src/tools/gt_gff3validator.c -o obj/src/tools/gt_gff3validator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_gff3validator.o +cc -c src/tools/gt_id_to_md5.c -o obj/src/tools/gt_id_to_md5.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_id_to_md5.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_idxlocali.c -o obj/src/tools/gt_idxlocali.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_interfeat.c -o obj/src/tools/gt_interfeat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_inlineseq_add.c -o obj/src/tools/gt_inlineseq_add.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_guessprot.c -o obj/src/tools/gt_guessprot.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_guessprot.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_inlineseq_split.c -o obj/src/tools/gt_inlineseq_split.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_id_to_md5.c -o obj/src/tools/gt_id_to_md5.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_id_to_md5.o -cc -c src/tools/gt_interfeat.c -o obj/src/tools/gt_interfeat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_kmer_database.c -o obj/src/tools/gt_kmer_database.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_interfeat.c -o obj/src/tools/gt_interfeat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_interfeat.o cc -c src/tools/gt_inlineseq_add.c -o obj/src/tools/gt_inlineseq_add.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_inlineseq_add.o +cc -c src/tools/gt_inlineseq_split.c -o obj/src/tools/gt_inlineseq_split.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_inlineseq_split.o cc -c src/tools/gt_idxlocali.c -o obj/src/tools/gt_idxlocali.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_idxlocali.o test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_kmer_database.c -o obj/src/tools/gt_kmer_database.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_linspace_align.c -o obj/src/tools/gt_linspace_align.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_inlineseq_split.c -o obj/src/tools/gt_inlineseq_split.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_inlineseq_split.o -cc -c src/tools/gt_interfeat.c -o obj/src/tools/gt_interfeat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_interfeat.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_loccheck.c -o obj/src/tools/gt_loccheck.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_magicmatch.c -o obj/src/tools/gt_magicmatch.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_matchtool.c -o obj/src/tools/gt_matchtool.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_loccheck.c -o obj/src/tools/gt_loccheck.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_loccheck.o cc -c src/tools/gt_hop.c -o obj/src/tools/gt_hop.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_hop.o +cc -c src/tools/gt_magicmatch.c -o obj/src/tools/gt_magicmatch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_magicmatch.o +cc -c src/tools/gt_kmer_database.c -o obj/src/tools/gt_kmer_database.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_kmer_database.o test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_matstat.c -o obj/src/tools/gt_matstat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_matchtool.c -o obj/src/tools/gt_matchtool.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_md5_to_id.c -o obj/src/tools/gt_md5_to_id.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_magicmatch.c -o obj/src/tools/gt_magicmatch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_magicmatch.o test -d obj/src/tools || mkdir -p obj/src/tools +test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_matstat.c -o obj/src/tools/gt_matstat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_md5_to_id.c -o obj/src/tools/gt_md5_to_id.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_merge.c -o obj/src/tools/gt_merge.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_md5_to_id.c -o obj/src/tools/gt_md5_to_id.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_md5_to_id.o -cc -c src/tools/gt_kmer_database.c -o obj/src/tools/gt_kmer_database.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_kmer_database.o +cc -c src/tools/gt_linspace_align.c -o obj/src/tools/gt_linspace_align.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_linspace_align.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_mergeesa.c -o obj/src/tools/gt_mergeesa.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_merge.c -o obj/src/tools/gt_merge.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_merge.o +cc -c src/tools/gt_matchtool.c -o obj/src/tools/gt_matchtool.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_matchtool.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_mergefeat.c -o obj/src/tools/gt_mergefeat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_mergeesa.c -o obj/src/tools/gt_mergeesa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_mergeesa.o test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_matchtool.c -o obj/src/tools/gt_matchtool.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_matchtool.o -cc -c src/tools/gt_mgth.c -o obj/src/tools/gt_mgth.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_matstat.c -o obj/src/tools/gt_matstat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_matstat.o -cc -c src/tools/gt_mergeesa.c -o obj/src/tools/gt_mergeesa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_mergeesa.o +cc -c src/tools/gt_md5_to_id.c -o obj/src/tools/gt_md5_to_id.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_md5_to_id.o +cc -c src/tools/gt_mgth.c -o obj/src/tools/gt_mgth.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_mergefeat.c -o obj/src/tools/gt_mergefeat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_mergefeat.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_mkfeatureindex.c -o obj/src/tools/gt_mkfeatureindex.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_mkfmindex.c -o obj/src/tools/gt_mkfmindex.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_mmapandread.c -o obj/src/tools/gt_mmapandread.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_mgth.c -o obj/src/tools/gt_mgth.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_mgth.o -cc -c src/tools/gt_mergefeat.c -o obj/src/tools/gt_mergefeat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_mergefeat.o -cc -c src/tools/gt_mkfmindex.c -o obj/src/tools/gt_mkfmindex.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_mkfmindex.o test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_mmapandread.c -o obj/src/tools/gt_mmapandread.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_mkfmindex.c -o obj/src/tools/gt_mkfmindex.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_orffinder.c -o obj/src/tools/gt_orffinder.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_mkfeatureindex.c -o obj/src/tools/gt_mkfeatureindex.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_mkfeatureindex.o cc -c src/tools/gt_packedindex.c -o obj/src/tools/gt_packedindex.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_mkfmindex.c -o obj/src/tools/gt_mkfmindex.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_mkfmindex.o +cc -c src/tools/gt_mmapandread.c -o obj/src/tools/gt_mmapandread.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_mmapandread.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_packedindex_chk_integrity.c -o obj/src/tools/gt_packedindex_chk_integrity.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_mmapandread.c -o obj/src/tools/gt_mmapandread.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_mmapandread.o -cc -c src/tools/gt_mkfeatureindex.c -o obj/src/tools/gt_mkfeatureindex.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_mkfeatureindex.o -cc -c src/tools/gt_linspace_align.c -o obj/src/tools/gt_linspace_align.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_linspace_align.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_packedindex_chk_search.c -o obj/src/tools/gt_packedindex_chk_search.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_packedindex.c -o obj/src/tools/gt_packedindex.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_packedindex.o +cc -c src/tools/gt_orffinder.c -o obj/src/tools/gt_orffinder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_orffinder.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_packedindex_mkctxmap.c -o obj/src/tools/gt_packedindex_mkctxmap.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_packedindex_trsuftab.c -o obj/src/tools/gt_packedindex_trsuftab.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_packedindex_chk_integrity.c -o obj/src/tools/gt_packedindex_chk_integrity.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_packedindex_chk_integrity.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_paircmp.c -o obj/src/tools/gt_paircmp.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_packedindex_chk_integrity.c -o obj/src/tools/gt_packedindex_chk_integrity.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_packedindex_chk_integrity.o -cc -c src/tools/gt_orffinder.c -o obj/src/tools/gt_orffinder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_orffinder.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_parsexrf.c -o obj/src/tools/gt_parsexrf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_patternmatch.c -o obj/src/tools/gt_patternmatch.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_packedindex_trsuftab.c -o obj/src/tools/gt_packedindex_trsuftab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_packedindex_trsuftab.o cc -c src/tools/gt_packedindex_mkctxmap.c -o obj/src/tools/gt_packedindex_mkctxmap.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_packedindex_mkctxmap.o +cc -c src/tools/gt_packedindex_chk_search.c -o obj/src/tools/gt_packedindex_chk_search.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_packedindex_chk_search.o +cc -c src/tools/gt_packedindex_trsuftab.c -o obj/src/tools/gt_packedindex_trsuftab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_packedindex_trsuftab.o cc -c src/tools/gt_parsexrf.c -o obj/src/tools/gt_parsexrf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_parsexrf.o test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_prebwt.c -o obj/src/tools/gt_prebwt.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_patternmatch.c -o obj/src/tools/gt_patternmatch.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_readjoiner.c -o obj/src/tools/gt_readjoiner.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_prebwt.c -o obj/src/tools/gt_prebwt.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_readjoiner_asqg.c -o obj/src/tools/gt_readjoiner_asqg.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_paircmp.c -o obj/src/tools/gt_paircmp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_paircmp.o -cc -c src/tools/gt_readjoiner.c -o obj/src/tools/gt_readjoiner.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner.o +test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_readjoiner.c -o obj/src/tools/gt_readjoiner.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_prebwt.c -o obj/src/tools/gt_prebwt.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_prebwt.o +cc -c src/tools/gt_readjoiner.c -o obj/src/tools/gt_readjoiner.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner.o +cc -c src/tools/gt_paircmp.c -o obj/src/tools/gt_paircmp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_paircmp.o test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_patternmatch.c -o obj/src/tools/gt_patternmatch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_patternmatch.o cc -c src/tools/gt_readjoiner_assembly.c -o obj/src/tools/gt_readjoiner_assembly.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_packedindex_chk_search.c -o obj/src/tools/gt_packedindex_chk_search.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_packedindex_chk_search.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_readjoiner_cgraph.c -o obj/src/tools/gt_readjoiner_cgraph.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_readjoiner_asqg.c -o obj/src/tools/gt_readjoiner_asqg.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_asqg.o +cc -c src/tools/gt_patternmatch.c -o obj/src/tools/gt_patternmatch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_patternmatch.o test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_readjoiner_cnttest.c -o obj/src/tools/gt_readjoiner_cnttest.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_readjoiner_cnttest.c -o obj/src/tools/gt_readjoiner_cnttest.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_readjoiner_correct.c -o obj/src/tools/gt_readjoiner_correct.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_readjoiner_gfa.c -o obj/src/tools/gt_readjoiner_gfa.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_readjoiner_correct.c -o obj/src/tools/gt_readjoiner_correct.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_correct.o -cc -c src/tools/gt_readjoiner_asqg.c -o obj/src/tools/gt_readjoiner_asqg.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_asqg.o +cc -c src/tools/gt_readjoiner_cgraph.c -o obj/src/tools/gt_readjoiner_cgraph.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_cgraph.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_readjoiner_graph.c -o obj/src/tools/gt_readjoiner_graph.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_readjoiner_correct.c -o obj/src/tools/gt_readjoiner_correct.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_correct.o cc -c src/tools/gt_readjoiner_cnttest.c -o obj/src/tools/gt_readjoiner_cnttest.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_cnttest.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_readjoiner_overlap.c -o obj/src/tools/gt_readjoiner_overlap.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_readjoiner_cgraph.c -o obj/src/tools/gt_readjoiner_cgraph.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_cgraph.o +cc -c src/tools/gt_readjoiner_assembly.c -o obj/src/tools/gt_readjoiner_assembly.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_assembly.o test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_readjoiner_gfa.c -o obj/src/tools/gt_readjoiner_gfa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_gfa.o cc -c src/tools/gt_readjoiner_prefilter.c -o obj/src/tools/gt_readjoiner_prefilter.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_readjoiner_spmtest.c -o obj/src/tools/gt_readjoiner_spmtest.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_readjoiner_gfa.c -o obj/src/tools/gt_readjoiner_gfa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_gfa.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_readreads.c -o obj/src/tools/gt_readreads.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_readjoiner_overlap.c -o obj/src/tools/gt_readjoiner_overlap.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_overlap.o -cc -c src/tools/gt_readjoiner_assembly.c -o obj/src/tools/gt_readjoiner_assembly.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_assembly.o -test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_readjoiner_graph.c -o obj/src/tools/gt_readjoiner_graph.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_graph.o cc -c src/tools/gt_readjoiner_spmtest.c -o obj/src/tools/gt_readjoiner_spmtest.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_spmtest.o +cc -c src/tools/gt_readreads.c -o obj/src/tools/gt_readreads.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readreads.o +test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_regioncov.c -o obj/src/tools/gt_regioncov.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_repfind.c -o obj/src/tools/gt_repfind.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_sain.c -o obj/src/tools/gt_sain.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_readjoiner_graph.c -o obj/src/tools/gt_readjoiner_graph.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_graph.o -cc -c src/tools/gt_readreads.c -o obj/src/tools/gt_readreads.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readreads.o cc -c src/tools/gt_regioncov.c -o obj/src/tools/gt_regioncov.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_regioncov.o +cc -c src/tools/gt_readjoiner_prefilter.c -o obj/src/tools/gt_readjoiner_prefilter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_prefilter.o +cc -c src/tools/gt_readjoiner_overlap.c -o obj/src/tools/gt_readjoiner_overlap.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_overlap.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_sam_interface.c -o obj/src/tools/gt_sam_interface.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_script_filter.c -o obj/src/tools/gt_script_filter.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_seed_extend.c -o obj/src/tools/gt_seed_extend.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_readjoiner_prefilter.c -o obj/src/tools/gt_readjoiner_prefilter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_prefilter.o -test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_select.c -o obj/src/tools/gt_select.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_sain.c -o obj/src/tools/gt_sain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_sain.o cc -c src/tools/gt_sam_interface.c -o obj/src/tools/gt_sam_interface.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_sam_interface.o cc -c src/tools/gt_script_filter.c -o obj/src/tools/gt_script_filter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_script_filter.o test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_select.c -o obj/src/tools/gt_select.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_seq.c -o obj/src/tools/gt_seq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_seqcorrect.c -o obj/src/tools/gt_seqcorrect.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_sain.c -o obj/src/tools/gt_sain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_sain.o +cc -c src/tools/gt_repfind.c -o obj/src/tools/gt_repfind.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_repfind.o +cc -c src/tools/gt_select.c -o obj/src/tools/gt_select.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_select.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_seqfilter.c -o obj/src/tools/gt_seqfilter.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_select.c -o obj/src/tools/gt_select.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_select.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_seqids.c -o obj/src/tools/gt_seqids.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_seq.c -o obj/src/tools/gt_seq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seq.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_seqlensort.c -o obj/src/tools/gt_seqlensort.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_seqids.c -o obj/src/tools/gt_seqids.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqids.o -cc -c src/tools/gt_repfind.c -o obj/src/tools/gt_repfind.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_repfind.o cc -c src/tools/gt_seqfilter.c -o obj/src/tools/gt_seqfilter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqfilter.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_seqmutate.c -o obj/src/tools/gt_seqmutate.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_seqids.c -o obj/src/tools/gt_seqids.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqids.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_seqorder.c -o obj/src/tools/gt_seqorder.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_seqstat.c -o obj/src/tools/gt_seqstat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_seqlensort.c -o obj/src/tools/gt_seqlensort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqlensort.o -cc -c src/tools/gt_seed_extend.c -o obj/src/tools/gt_seed_extend.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seed_extend.o cc -c src/tools/gt_seqmutate.c -o obj/src/tools/gt_seqmutate.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqmutate.o test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_seqstat.c -o obj/src/tools/gt_seqstat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_seqtransform.c -o obj/src/tools/gt_seqtransform.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_seed_extend.c -o obj/src/tools/gt_seed_extend.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seed_extend.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_seqtranslate.c -o obj/src/tools/gt_seqtranslate.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_seqtransform.c -o obj/src/tools/gt_seqtransform.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqtransform.o +cc -c src/tools/gt_seqorder.c -o obj/src/tools/gt_seqorder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqorder.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_sequniq.c -o obj/src/tools/gt_sequniq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_seqcorrect.c -o obj/src/tools/gt_seqcorrect.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqcorrect.o -cc -c src/tools/gt_seqtransform.c -o obj/src/tools/gt_seqtransform.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqtransform.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_sfxmap.c -o obj/src/tools/gt_sfxmap.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_show_seedext.c -o obj/src/tools/gt_show_seedext.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_seqorder.c -o obj/src/tools/gt_seqorder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqorder.o +cc -c src/tools/gt_seqcorrect.c -o obj/src/tools/gt_seqcorrect.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqcorrect.o cc -c src/tools/gt_seqtranslate.c -o obj/src/tools/gt_seqtranslate.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqtranslate.o +cc -c src/tools/gt_seqstat.c -o obj/src/tools/gt_seqstat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqstat.o test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_show_seedext.c -o obj/src/tools/gt_show_seedext.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_sequniq.c -o obj/src/tools/gt_sequniq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_sequniq.o -cc -c src/tools/gt_shredder.c -o obj/src/tools/gt_shredder.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_shulen.c -o obj/src/tools/gt_shulen.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_seqstat.c -o obj/src/tools/gt_seqstat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqstat.o test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_shredder.c -o obj/src/tools/gt_shredder.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_shulen.c -o obj/src/tools/gt_shulen.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_simreads.c -o obj/src/tools/gt_simreads.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_skproto.c -o obj/src/tools/gt_skproto.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_show_seedext.c -o obj/src/tools/gt_show_seedext.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_show_seedext.o cc -c src/tools/gt_shredder.c -o obj/src/tools/gt_shredder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_shredder.o -test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_shulen.c -o obj/src/tools/gt_shulen.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_shulen.o +test -d obj/src/tools || mkdir -p obj/src/tools +test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_skproto.c -o obj/src/tools/gt_skproto.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_snpper.c -o obj/src/tools/gt_snpper.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_sortbench.c -o obj/src/tools/gt_sortbench.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_simreads.c -o obj/src/tools/gt_simreads.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_simreads.o +cc -c src/tools/gt_snpper.c -o obj/src/tools/gt_snpper.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_snpper.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_speck.c -o obj/src/tools/gt_speck.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_skproto.c -o obj/src/tools/gt_skproto.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_skproto.o -cc -c src/tools/gt_snpper.c -o obj/src/tools/gt_snpper.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_snpper.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_splicesiteinfo.c -o obj/src/tools/gt_splicesiteinfo.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_skproto.c -o obj/src/tools/gt_skproto.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_skproto.o +cc -c src/tools/gt_splicesiteinfo.c -o obj/src/tools/gt_splicesiteinfo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_splicesiteinfo.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_splitfasta.c -o obj/src/tools/gt_splitfasta.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_splicesiteinfo.c -o obj/src/tools/gt_splicesiteinfo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_splicesiteinfo.o -cc -c src/tools/gt_simreads.c -o obj/src/tools/gt_simreads.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_simreads.o test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_speck.c -o obj/src/tools/gt_speck.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_speck.o cc -c src/tools/gt_stat.c -o obj/src/tools/gt_stat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_speck.c -o obj/src/tools/gt_speck.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_speck.o +cc -c src/tools/gt_stat.c -o obj/src/tools/gt_stat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_stat.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_suffixerator.c -o obj/src/tools/gt_suffixerator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_tagerator.c -o obj/src/tools/gt_tagerator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_sfxmap.c -o obj/src/tools/gt_sfxmap.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_sfxmap.o +test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_splitfasta.c -o obj/src/tools/gt_splitfasta.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_splitfasta.o -cc -c src/tools/gt_suffixerator.c -o obj/src/tools/gt_suffixerator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_suffixerator.o -cc -c src/tools/gt_stat.c -o obj/src/tools/gt_stat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_stat.o +cc -c src/tools/gt_tagerator.c -o obj/src/tools/gt_tagerator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_tallymer.c -o obj/src/tools/gt_tallymer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_tallymer.c -o obj/src/tools/gt_tallymer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_template.c -o obj/src/tools/gt_template.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_suffixerator.c -o obj/src/tools/gt_suffixerator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_suffixerator.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_tir.c -o obj/src/tools/gt_tir.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_tagerator.c -o obj/src/tools/gt_tagerator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_tagerator.o cc -c src/tools/gt_template.c -o obj/src/tools/gt_template.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_template.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_trieins.c -o obj/src/tools/gt_trieins.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_tagerator.c -o obj/src/tools/gt_tagerator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_tagerator.o test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_trieins.c -o obj/src/tools/gt_trieins.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_trieins.o cc -c src/tools/gt_uniq.c -o obj/src/tools/gt_uniq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_sfxmap.c -o obj/src/tools/gt_sfxmap.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_sfxmap.o cc -c src/tools/gt_tir.c -o obj/src/tools/gt_tir.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_tir.o -cc -c src/tools/gt_trieins.c -o obj/src/tools/gt_trieins.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_trieins.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_wtree.c -o obj/src/tools/gt_wtree.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools @@ -4058,49 +4094,49 @@ cc -c src/tools/gt_uniq.c -o obj/src/tools/gt_uniq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_uniq.o test -d obj/src/examples || mkdir -p obj/src/examples cc -c src/examples/custom_stream.c -o obj/src/examples/custom_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_wtree.c -o obj/src/tools/gt_wtree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_wtree.o test -d obj/src/examples || mkdir -p obj/src/examples cc -c src/examples/gff3sort.c -o obj/src/examples/gff3sort.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_wtree.c -o obj/src/tools/gt_wtree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_wtree.o +cc -c src/tools/gt_tallymer.c -o obj/src/tools/gt_tallymer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_tallymer.o test -d obj/src/examples || mkdir -p obj/src/examples cc -c src/examples/gff3validator.c -o obj/src/examples/gff3validator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/examples/custom_stream.c -o obj/src/examples/custom_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/custom_stream.o cc -c src/examples/gff3sort.c -o obj/src/examples/gff3sort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/gff3sort.o +cc -c src/examples/gff3validator.c -o obj/src/examples/gff3validator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/gff3validator.o test -d obj/src/examples || mkdir -p obj/src/examples cc -c src/examples/noop.c -o obj/src/examples/noop.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/examples || mkdir -p obj/src/examples cc -c src/examples/sketch_constructed.c -o obj/src/examples/sketch_constructed.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_tallymer.c -o obj/src/tools/gt_tallymer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_tallymer.o -cc -c src/examples/noop.c -o obj/src/examples/noop.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/noop.o -cc -c src/examples/gff3validator.c -o obj/src/examples/gff3validator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/gff3validator.o -cc -c src/tools/gt_wtree_bench.c -o obj/src/tools/gt_wtree_bench.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_wtree_bench.o test -d obj/src/examples || mkdir -p obj/src/examples cc -c src/examples/sketch_parsed_with_ctrack.c -o obj/src/examples/sketch_parsed_with_ctrack.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/examples || mkdir -p obj/src/examples -cc -c src/examples/sketch_constructed.c -o obj/src/examples/sketch_constructed.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/sketch_constructed.o +cc -c src/examples/noop.c -o obj/src/examples/noop.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/noop.o test -d obj/src/examples || mkdir -p obj/src/examples cc -c src/examples/sketch_parsed_with_ordering.c -o obj/src/examples/sketch_parsed_with_ordering.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_wtree_bench.c -o obj/src/tools/gt_wtree_bench.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_wtree_bench.o +cc -c src/tools/gt_sortbench.c -o obj/src/tools/gt_sortbench.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_sortbench.o +cc -c src/examples/sketch_parsed_with_ctrack.c -o obj/src/examples/sketch_parsed_with_ctrack.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/sketch_parsed_with_ctrack.o +test -d obj/src/examples || mkdir -p obj/src/examples cc -c src/examples/sketch_parsed.c -o obj/src/examples/sketch_parsed.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/examples/sketch_parsed_with_ordering.c -o obj/src/examples/sketch_parsed_with_ordering.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/sketch_parsed_with_ordering.o test -d lib || mkdir -p lib ar r lib/libgenometools.a obj/src/core/alphabet.o obj/src/core/array.o obj/src/core/array2dim.o obj/src/core/array2dim_sparse.o obj/src/core/array3dim.o obj/src/core/basename.o obj/src/core/bioseq.o obj/src/core/bioseq_col.o obj/src/core/bioseq_iterator.o obj/src/core/bitbuffer.o obj/src/core/bitpackstringop.o obj/src/core/bitpackstringop16.o obj/src/core/bitpackstringop32.o obj/src/core/bitpackstringop64.o obj/src/core/bitpackstringop8.o obj/src/core/bittab.o obj/src/core/bool_matrix.o obj/src/core/bsearch.o obj/src/core/byte_popcount.o obj/src/core/byte_select.o obj/src/core/checkbitpackarray.o obj/src/core/checkbitpackstring-int.o obj/src/core/checkbitpackstring.o obj/src/core/checkbitpackstring16.o obj/src/core/checkbitpackstring32.o obj/src/core/checkbitpackstring64.o obj/src/core/checkbitpackstring8.o obj/src/core/class_alloc.o obj/src/core/class_alloc_lock.o obj/src/core/codon_iterator.o obj/src/core/codon_iterator_encseq.o obj/src/core/codon_iterator_simple.o obj/src/core/colorspace.o obj/src/core/combinatorics.o obj/src/core/compact_ulong_store.o obj/src/core/compat.o obj/src/core/complement.o obj/src/core/countingsort.o obj/src/core/cstr.o obj/src/core/cstr_array.o obj/src/core/cstr_table.o obj/src/core/csvline_reader.o obj/src/core/desc_buffer.o obj/src/core/disc_distri.o obj/src/core/dlist.o obj/src/core/dual-pivot-qsort.o obj/src/core/dyn_bittab.o obj/src/core/dynalloc.o obj/src/core/eansi.o obj/src/core/ebzlib.o obj/src/core/encseq.o obj/src/core/encseq_access_type.o obj/src/core/encseq_col.o obj/src/core/encseq_metadata.o obj/src/core/encseq_options.o obj/src/core/encseq_ptr.o obj/src/core/endianess.o obj/src/core/error.o obj/src/core/example.o obj/src/core/example_a.o obj/src/core/example_b.o obj/src/core/ezlib.o obj/src/core/fa.o obj/src/core/fasta.o obj/src/core/fasta_reader.o obj/src/core/fasta_reader_fsm.o obj/src/core/fasta_reader_rec.o obj/src/core/fasta_reader_seqit.o obj/src/core/fastq.o obj/src/core/file.o obj/src/core/fileutils.o obj/src/core/gc_content.o obj/src/core/grep.o obj/src/core/gtdatapath.o obj/src/core/hashmap.o obj/src/core/hashtable.o obj/src/core/init.o obj/src/core/interval_tree.o obj/src/core/io.o obj/src/core/log.o obj/src/core/logger.o obj/src/core/ma.o obj/src/core/mapspec.o obj/src/core/mathsupport.o obj/src/core/md5_encoder.o obj/src/core/md5_fingerprint.o obj/src/core/md5_seqid.o obj/src/core/md5_tab.o obj/src/core/msort.o obj/src/core/multithread.o obj/src/core/option.o obj/src/core/orf.o obj/src/core/output_file.o obj/src/core/parseutils.o obj/src/core/password_entry.o obj/src/core/phase.o obj/src/core/process.o obj/src/core/progressbar.o obj/src/core/qsort-ulong.o obj/src/core/qsort_r.o obj/src/core/quality.o obj/src/core/queue.o obj/src/core/radix_sort.o obj/src/core/range.o obj/src/core/readmode.o obj/src/core/safearith.o obj/src/core/score_function.o obj/src/core/score_matrix.o obj/src/core/seq.o obj/src/core/seq_col.o obj/src/core/seq_info_cache.o obj/src/core/seq_iterator.o obj/src/core/seq_iterator_fastq.o obj/src/core/seq_iterator_sequence_buffer.o obj/src/core/sequence_buffer.o obj/src/core/sequence_buffer_dust.o obj/src/core/sequence_buffer_embl.o obj/src/core/sequence_buffer_fasta.o obj/src/core/sequence_buffer_fastq.o obj/src/core/sequence_buffer_gb.o obj/src/core/sequence_buffer_plain.o obj/src/core/showtime.o obj/src/core/sig.o obj/src/core/spacepeak.o obj/src/core/splitter.o obj/src/core/str.o obj/src/core/str_array.o obj/src/core/str_cache.o obj/src/core/strand.o obj/src/core/strcmp.o obj/src/core/string_distri.o obj/src/core/symbol.o obj/src/core/thread.o obj/src/core/timer.o obj/src/core/tokenizer.o obj/src/core/tool.o obj/src/core/tool_iterator.o obj/src/core/toolbox.o obj/src/core/tooldriver.o obj/src/core/trans_table.o obj/src/core/translator.o obj/src/core/unit_testing.o obj/src/core/version.o obj/src/core/versionfunc.o obj/src/core/warning.o obj/src/core/xansi.o obj/src/core/xbsd.o obj/src/core/xbzlib.o obj/src/core/xposix.o obj/src/core/xzlib.o obj/src/core/yarandom.o obj/src/extended/add_ids_stream.o obj/src/extended/add_ids_visitor.o obj/src/extended/add_introns_stream.o obj/src/extended/affinealign.o obj/src/extended/aligned_segment.o obj/src/extended/aligned_segments_pile.o obj/src/extended/alignment.o obj/src/extended/anno_db_gfflike.o obj/src/extended/anno_db_schema.o obj/src/extended/array_in_stream.o obj/src/extended/array_out_stream.o obj/src/extended/assembly_stats_calculator.o obj/src/extended/bed_in_stream.o obj/src/extended/bed_parser.o obj/src/extended/bitinstream.o obj/src/extended/bitoutstream.o obj/src/extended/blast_process_call.o obj/src/extended/buffer_stream.o obj/src/extended/cds_check_stream.o obj/src/extended/cds_check_visitor.o obj/src/extended/cds_stream.o obj/src/extended/cds_visitor.o obj/src/extended/chain.o obj/src/extended/check_boundaries_visitor.o obj/src/extended/chseqids_stream.o obj/src/extended/clustered_set.o obj/src/extended/clustered_set_uf.o obj/src/extended/coin_hmm.o obj/src/extended/collect_ids_visitor.o obj/src/extended/comment_node.o obj/src/extended/compressed_bitsequence.o obj/src/extended/condenseq.o obj/src/extended/condenseq_creator.o obj/src/extended/condenseq_search_arguments.o obj/src/extended/consensus_sa.o obj/src/extended/csa_gene.o obj/src/extended/csa_splice_form.o obj/src/extended/csa_stream.o obj/src/extended/csa_variable_strands.o obj/src/extended/csa_visitor.o obj/src/extended/cstr_iterator.o obj/src/extended/diagonalbandalign.o obj/src/extended/diagonalbandalign_affinegapcost.o obj/src/extended/dice_hmm.o obj/src/extended/dot_out_stream.o obj/src/extended/dot_visitor.o obj/src/extended/dup_feature_stream.o obj/src/extended/dup_feature_visitor.o obj/src/extended/editscript.o obj/src/extended/elias_gamma.o obj/src/extended/encdesc.o obj/src/extended/encdesc_header_io.o obj/src/extended/eof_node.o obj/src/extended/evaluator.o obj/src/extended/extract_feature_sequence.o obj/src/extended/extract_feature_stream.o obj/src/extended/extract_feature_visitor.o obj/src/extended/fasta_header_iterator.o obj/src/extended/feature_in_stream.o obj/src/extended/feature_index.o obj/src/extended/feature_index_memory.o obj/src/extended/feature_info.o obj/src/extended/feature_node.o obj/src/extended/feature_node_iterator.o obj/src/extended/feature_node_observer.o obj/src/extended/feature_out_stream.o obj/src/extended/feature_stream.o obj/src/extended/feature_visitor.o obj/src/extended/gap_str.o obj/src/extended/genome_node.o obj/src/extended/gff3_escaping.o obj/src/extended/gff3_in_stream.o obj/src/extended/gff3_in_stream_plain.o obj/src/extended/gff3_linesorted_out_stream.o obj/src/extended/gff3_numsorted_out_stream.o obj/src/extended/gff3_out_stream.o obj/src/extended/gff3_output.o obj/src/extended/gff3_parser.o obj/src/extended/gff3_visitor.o obj/src/extended/globalchaining.o obj/src/extended/golomb.o obj/src/extended/gtdatahelp.o obj/src/extended/gtf_in_stream.o obj/src/extended/gtf_out_stream.o obj/src/extended/gtf_parser.o obj/src/extended/gtf_visitor.o obj/src/extended/hcr.o obj/src/extended/hmm.o obj/src/extended/hpol_processor.o obj/src/extended/huffcode.o obj/src/extended/id_to_md5_stream.o obj/src/extended/id_to_md5_visitor.o obj/src/extended/inter_feature_stream.o obj/src/extended/inter_feature_visitor.o obj/src/extended/intset.o obj/src/extended/intset_16.o obj/src/extended/intset_32.o obj/src/extended/intset_8.o obj/src/extended/intset_combined.o obj/src/extended/io_function_pointers.o obj/src/extended/kmer_database.o obj/src/extended/linearalign.o obj/src/extended/linearalign_affinegapcost.o obj/src/extended/linspace_management.o obj/src/extended/load_stream.o obj/src/extended/luahelper.o obj/src/extended/luaserialize.o obj/src/extended/mapping.o obj/src/extended/match.o obj/src/extended/match_blast.o obj/src/extended/match_iterator.o obj/src/extended/match_iterator_blast.o obj/src/extended/match_iterator_last.o obj/src/extended/match_iterator_open.o obj/src/extended/match_iterator_sw.o obj/src/extended/match_last.o obj/src/extended/match_open.o obj/src/extended/match_sw.o obj/src/extended/match_visitor.o obj/src/extended/maxcoordvalue.o obj/src/extended/md5_to_id_stream.o obj/src/extended/md5_to_id_visitor.o obj/src/extended/md5set.o obj/src/extended/merge_feature_stream.o obj/src/extended/merge_feature_visitor.o obj/src/extended/merge_stream.o obj/src/extended/meta_node.o obj/src/extended/multi_sanitizer_visitor.o obj/src/extended/multieoplist.o obj/src/extended/mutate.o obj/src/extended/node_stream.o obj/src/extended/node_visitor.o obj/src/extended/obo_parse_tree.o obj/src/extended/obo_stanza.o obj/src/extended/orf_finder_stream.o obj/src/extended/orf_finder_visitor.o obj/src/extended/orf_iterator.o obj/src/extended/orphanage.o obj/src/extended/permute_words.o obj/src/extended/popcount_tab.o obj/src/extended/priority_queue.o obj/src/extended/ranked_list.o obj/src/extended/rbtree.o obj/src/extended/rcr.o obj/src/extended/rdb.o obj/src/extended/rdb_sqlite.o obj/src/extended/rdb_visitor.o obj/src/extended/reconstructalignment.o obj/src/extended/region_mapping.o obj/src/extended/region_node.o obj/src/extended/region_node_builder.o obj/src/extended/regioncov_visitor.o obj/src/extended/regular_seqid.o obj/src/extended/reverse.o obj/src/extended/rmq.o obj/src/extended/safe_popen.o obj/src/extended/sam_alignment.o obj/src/extended/sam_query_name_iterator.o obj/src/extended/samfile_encseq_mapping.o obj/src/extended/samfile_iterator.o obj/src/extended/sampling.o obj/src/extended/scorehandler.o obj/src/extended/script_filter.o obj/src/extended/script_wrapper_stream.o obj/src/extended/script_wrapper_visitor.o obj/src/extended/select_stream.o obj/src/extended/select_visitor.o obj/src/extended/seqid2file.o obj/src/extended/seqid2seqnum_mapping.o obj/src/extended/seqpos_classifier.o obj/src/extended/sequence_node.o obj/src/extended/sequence_node_add_stream.o obj/src/extended/sequence_node_out_stream.o obj/src/extended/sequence_node_out_visitor.o obj/src/extended/set_source_visitor.o obj/src/extended/shredder.o obj/src/extended/snp_annotator_stream.o obj/src/extended/snp_annotator_visitor.o obj/src/extended/sort_stream.o obj/src/extended/spec_results.o obj/src/extended/spec_visitor.o obj/src/extended/splice_site_info_stream.o obj/src/extended/splice_site_info_visitor.o obj/src/extended/splicedseq.o obj/src/extended/squarealign.o obj/src/extended/sspliced_alignment.o obj/src/extended/sspliced_alignment_parsing.o obj/src/extended/stat_stream.o obj/src/extended/stat_visitor.o obj/src/extended/stream_evaluator.o obj/src/extended/string_matching.o obj/src/extended/swalign.o obj/src/extended/tag_value_map.o obj/src/extended/targetbest_select_stream.o obj/src/extended/tidy_region_node_stream.o obj/src/extended/tidy_region_node_visitor.o obj/src/extended/tir_stream.o obj/src/extended/transcript_bittabs.o obj/src/extended/transcript_counts.o obj/src/extended/transcript_evaluators.o obj/src/extended/transcript_exons.o obj/src/extended/transcript_used_exons.o obj/src/extended/type_checker.o obj/src/extended/type_checker_builtin.o obj/src/extended/type_checker_obo.o obj/src/extended/type_graph.o obj/src/extended/type_node.o obj/src/extended/typecheck_info.o obj/src/extended/uint64hashtable.o obj/src/extended/union_find.o obj/src/extended/uniq_stream.o obj/src/extended/visitor_stream.o obj/src/extended/wtree.o obj/src/extended/wtree_encseq.o obj/src/extended/xrf_abbr_entry.o obj/src/extended/xrf_abbr_parse_tree.o obj/src/extended/xrf_checker.o obj/src/extended/xrfcheck_info.o obj/src/gtlua/alphabet_lua.o obj/src/gtlua/annotationsketch_lua.o obj/src/gtlua/bittab_lua.o obj/src/gtlua/canvas_lua.o obj/src/gtlua/cds_stream_lua.o obj/src/gtlua/csa_stream_lua.o obj/src/gtlua/diagram_lua.o obj/src/gtlua/encseq_lua.o obj/src/gtlua/feature_index_lua.o obj/src/gtlua/feature_node_iterator_lua.o obj/src/gtlua/feature_stream_lua.o obj/src/gtlua/feature_visitor_lua.o obj/src/gtlua/genome_node_lua.o obj/src/gtlua/genome_stream_lua.o obj/src/gtlua/genome_visitor_lua.o obj/src/gtlua/gt_lua.o obj/src/gtlua/gtcore_lua.o obj/src/gtlua/gtext_lua.o obj/src/gtlua/image_info_lua.o obj/src/gtlua/layout_lua.o obj/src/gtlua/mathsupport_lua.o obj/src/gtlua/range_lua.o obj/src/gtlua/region_mapping_lua.o obj/src/gtlua/score_matrix_lua.o obj/src/gtlua/stream_evaluator_lua.o obj/src/gtlua/translate_lua.o obj/src/match/apmeoveridx.o obj/src/match/asqg_writer.o obj/src/match/bare-encseq.o obj/src/match/bcktab.o obj/src/match/cgr_spacedseed.o obj/src/match/chain2dim.o obj/src/match/chainofin.o obj/src/match/cutendpfx.o obj/src/match/dbs_spaced_seeds.o obj/src/match/diagband-struct.o obj/src/match/diagbandseed.o obj/src/match/dist-short.o obj/src/match/echoseq.o obj/src/match/eis-blockcomp-param.o obj/src/match/eis-blockcomp.o obj/src/match/eis-bwtseq-construct.o obj/src/match/eis-bwtseq-context-param.o obj/src/match/eis-bwtseq-context.o obj/src/match/eis-bwtseq-extinfo.o obj/src/match/eis-bwtseq-param.o obj/src/match/eis-bwtseq-sass.o obj/src/match/eis-bwtseq.o obj/src/match/eis-encidxseq-construct.o obj/src/match/eis-encidxseq-param.o obj/src/match/eis-encidxseq.o obj/src/match/eis-mrangealphabet.o obj/src/match/eis-sa-common.o obj/src/match/eis-seqblocktranslate.o obj/src/match/eis-seqranges.o obj/src/match/eis-sequencemultiread.o obj/src/match/eis-specialsrank.o obj/src/match/eis-suffixarray-interface.o obj/src/match/eis-suffixerator-interface.o obj/src/match/eis-voiditf.o obj/src/match/encseq2offset.o obj/src/match/enum-patt.o obj/src/match/esa-bottomup.o obj/src/match/esa-dfs.o obj/src/match/esa-lcpintervals.o obj/src/match/esa-map.o obj/src/match/esa-maxpairs.o obj/src/match/esa-merge.o obj/src/match/esa-minunique.o obj/src/match/esa-mmsearch.o obj/src/match/esa-scanprj.o obj/src/match/esa-seqread.o obj/src/match/esa-shulen.o obj/src/match/esa-splititv-simple.o obj/src/match/esa-splititv.o obj/src/match/esa-spmitvs.o obj/src/match/esa-spmsk.o obj/src/match/esa_lcpintervals_visitor.o obj/src/match/esa_spmitvs_visitor.o obj/src/match/esa_visitor.o obj/src/match/firstcodes-accum.o obj/src/match/firstcodes-cache.o obj/src/match/firstcodes-insert.o obj/src/match/firstcodes-psbuf.o obj/src/match/firstcodes-scan.o obj/src/match/firstcodes-spacelog.o obj/src/match/firstcodes-tab.o obj/src/match/firstcodes.o obj/src/match/fmi-fwduni.o obj/src/match/fmi-keyval.o obj/src/match/fmi-locate.o obj/src/match/fmi-map.o obj/src/match/fmi-mapspec.o obj/src/match/fmi-mkindex.o obj/src/match/fmi-save.o obj/src/match/fmi-sufbwtstream.o obj/src/match/ft-eoplist.o obj/src/match/ft-front-generation.o obj/src/match/ft-front-prune.o obj/src/match/ft-polish.o obj/src/match/ft-trimstat.o obj/src/match/gfa_writer.o obj/src/match/giextract.o obj/src/match/greedyedist.o obj/src/match/greedyfwdmat.o obj/src/match/hashfirstcodes.o obj/src/match/hlk-version.o obj/src/match/hplstore.o obj/src/match/idx-limdfs.o obj/src/match/idxlocali.o obj/src/match/idxlocalidp.o obj/src/match/idxlocalisw.o obj/src/match/index_options.o obj/src/match/initbasepower.o obj/src/match/initeqsvec.o obj/src/match/iter-window.o obj/src/match/karlin_altschul_stat.o obj/src/match/kmer2string.o obj/src/match/lua_tools.o obj/src/match/marksubstring.o obj/src/match/merger-trie.o obj/src/match/mssufpat.o obj/src/match/myersapm.o obj/src/match/nullcols.o obj/src/match/optionargmode.o obj/src/match/pck-count-nodes.o obj/src/match/pckbucket.o obj/src/match/pckdfs.o obj/src/match/prsqualint.o obj/src/match/pssm.o obj/src/match/querymatch-align.o obj/src/match/querymatch-display.o obj/src/match/querymatch.o obj/src/match/radixsort_str.o obj/src/match/randomcodes-correct.o obj/src/match/randomcodes-find-seldom.o obj/src/match/randomcodes-hpcorrect.o obj/src/match/randomcodes-insert.o obj/src/match/randomcodes-sfx-partssuf.o obj/src/match/randomcodes-tab.o obj/src/match/randomcodes.o obj/src/match/rdj-cntlist.o obj/src/match/rdj-contfind-bottomup.o obj/src/match/rdj-contfinder.o obj/src/match/rdj-contigpaths.o obj/src/match/rdj-contigs-graph.o obj/src/match/rdj-contigs-writer.o obj/src/match/rdj-errfind.o obj/src/match/rdj-ovlfind-bf.o obj/src/match/rdj-ovlfind-dp.o obj/src/match/rdj-ovlfind-gusfield.o obj/src/match/rdj-ovlfind-kmp.o obj/src/match/rdj-pairwise.o obj/src/match/rdj-spmfind.o obj/src/match/rdj-spmlist.o obj/src/match/rdj-spmproc.o obj/src/match/rdj-strgraph.o obj/src/match/rdj-twobitenc-editor.o obj/src/match/rdj-version.o obj/src/match/reads2twobit.o obj/src/match/reads_libraries_table.o obj/src/match/rectangle-store.o obj/src/match/revcompl.o obj/src/match/seed-extend-iter.o obj/src/match/seed-extend.o obj/src/match/seed_extend_parts.o obj/src/match/seqabstract.o obj/src/match/seqnumrelpos.o obj/src/match/sfx-apfxlen.o obj/src/match/sfx-bentsedg.o obj/src/match/sfx-bltrie.o obj/src/match/sfx-copysort.o obj/src/match/sfx-diffcov.o obj/src/match/sfx-enumcodes.o obj/src/match/sfx-lcpvalues.o obj/src/match/sfx-linlcp.o obj/src/match/sfx-lwcheck.o obj/src/match/sfx-mappedstr.o obj/src/match/sfx-maprange.o obj/src/match/sfx-opt.o obj/src/match/sfx-outprj.o obj/src/match/sfx-partssuf.o obj/src/match/sfx-radixsort.o obj/src/match/sfx-run.o obj/src/match/sfx-sain.o obj/src/match/sfx-shortreadsort.o obj/src/match/sfx-suffixer.o obj/src/match/sfx-suffixgetset.o obj/src/match/sfx-suftaborder.o obj/src/match/shu-dfs.o obj/src/match/shu-divergence.o obj/src/match/shu-encseq-gc.o obj/src/match/shu-genomediff.o obj/src/match/shu_unitfile.o obj/src/match/spaced-seeds.o obj/src/match/specialrank.o obj/src/match/spmsuftab.o obj/src/match/squarededist.o obj/src/match/substriter.o obj/src/match/tagerator.o obj/src/match/test-mappedstr.o obj/src/match/test-maxpairs.o obj/src/match/test-mergeesa.o obj/src/match/test-mtrieins.o obj/src/match/test-pairwise.o obj/src/match/turnwheels.o obj/src/match/twobits2kmers.o obj/src/match/tyr-map.o obj/src/match/tyr-mersplit.o obj/src/match/tyr-mkindex.o obj/src/match/tyr-occratio.o obj/src/match/tyr-search.o obj/src/match/xdrop.o obj/src/ltr/gt_ltrclustering.o obj/src/ltr/gt_ltrdigest.o obj/src/ltr/gt_ltrharvest.o obj/src/ltr/ltr_classify_stream.o obj/src/ltr/ltr_cluster_prepare_seq_visitor.o obj/src/ltr/ltr_cluster_stream.o obj/src/ltr/ltr_four_char_motif.o obj/src/ltr/ltr_input_check_visitor.o obj/src/ltr/ltr_orf_annotator_stream.o obj/src/ltr/ltr_refseq_match_stream.o obj/src/ltr/ltrdigest_file_out_stream.o obj/src/ltr/ltrdigest_pbs_visitor.o obj/src/ltr/ltrdigest_pdom_visitor.o obj/src/ltr/ltrdigest_ppt_visitor.o obj/src/ltr/ltrdigest_strand_assign_visitor.o obj/src/ltr/ltrharvest_fasta_out_stream.o obj/src/ltr/ltrharvest_fasta_out_visitor.o obj/src/ltr/ltrharvest_stream.o obj/src/ltr/ltrharvest_tabout_stream.o obj/src/ltr/ltrharvest_tabout_visitor.o obj/src/ltr/pdom_model_set.o obj/src/mgth/metagenomethreader.o obj/src/mgth/mg_codon.o obj/src/mgth/mg_combinedscore.o obj/src/mgth/mg_compute_gene_prediction.o obj/src/mgth/mg_computepath.o obj/src/mgth/mg_outputwriter.o obj/src/mgth/mg_reverse.o obj/src/mgth/mg_xmlparser.o obj/src/annotationsketch/block.o obj/src/annotationsketch/canvas.o obj/src/annotationsketch/canvas_cairo.o obj/src/annotationsketch/canvas_cairo_context.o obj/src/annotationsketch/canvas_cairo_file.o obj/src/annotationsketch/color.o obj/src/annotationsketch/coords.o obj/src/annotationsketch/custom_track.o obj/src/annotationsketch/custom_track_example.o obj/src/annotationsketch/custom_track_gc_content.o obj/src/annotationsketch/custom_track_script_wrapper.o obj/src/annotationsketch/diagram.o obj/src/annotationsketch/drawing_range.o obj/src/annotationsketch/element.o obj/src/annotationsketch/graphics.o obj/src/annotationsketch/graphics_cairo.o obj/src/annotationsketch/gt_sketch.o obj/src/annotationsketch/gt_sketch_page.o obj/src/annotationsketch/image_info.o obj/src/annotationsketch/layout.o obj/src/annotationsketch/line.o obj/src/annotationsketch/line_breaker.o obj/src/annotationsketch/line_breaker_bases.o obj/src/annotationsketch/line_breaker_captions.o obj/src/annotationsketch/luastyle.o obj/src/annotationsketch/rec_map.o obj/src/annotationsketch/style.o obj/src/annotationsketch/text_width_calculator.o obj/src/annotationsketch/text_width_calculator_cairo.o obj/src/annotationsketch/track.o -ar: creating lib/libgenometools.a test -d lib || mkdir -p lib +ar: creating lib/libgenometools.a cc -Wl,-z,relro -Wl,-z,now -L/usr/local/lib -Wl,--version-script=obj/public_symbols.lst \ -Llib -shared \ -Wl,-soname,libgenometools.so.0 obj/src/core/alphabet.o obj/src/core/array.o obj/src/core/array2dim.o obj/src/core/array2dim_sparse.o obj/src/core/array3dim.o obj/src/core/basename.o obj/src/core/bioseq.o obj/src/core/bioseq_col.o obj/src/core/bioseq_iterator.o obj/src/core/bitbuffer.o obj/src/core/bitpackstringop.o obj/src/core/bitpackstringop16.o obj/src/core/bitpackstringop32.o obj/src/core/bitpackstringop64.o obj/src/core/bitpackstringop8.o obj/src/core/bittab.o obj/src/core/bool_matrix.o obj/src/core/bsearch.o obj/src/core/byte_popcount.o obj/src/core/byte_select.o obj/src/core/checkbitpackarray.o obj/src/core/checkbitpackstring-int.o obj/src/core/checkbitpackstring.o obj/src/core/checkbitpackstring16.o obj/src/core/checkbitpackstring32.o obj/src/core/checkbitpackstring64.o obj/src/core/checkbitpackstring8.o obj/src/core/class_alloc.o obj/src/core/class_alloc_lock.o obj/src/core/codon_iterator.o obj/src/core/codon_iterator_encseq.o obj/src/core/codon_iterator_simple.o obj/src/core/colorspace.o obj/src/core/combinatorics.o obj/src/core/compact_ulong_store.o obj/src/core/compat.o obj/src/core/complement.o obj/src/core/countingsort.o obj/src/core/cstr.o obj/src/core/cstr_array.o obj/src/core/cstr_table.o obj/src/core/csvline_reader.o obj/src/core/desc_buffer.o obj/src/core/disc_distri.o obj/src/core/dlist.o obj/src/core/dual-pivot-qsort.o obj/src/core/dyn_bittab.o obj/src/core/dynalloc.o obj/src/core/eansi.o obj/src/core/ebzlib.o obj/src/core/encseq.o obj/src/core/encseq_access_type.o obj/src/core/encseq_col.o obj/src/core/encseq_metadata.o obj/src/core/encseq_options.o obj/src/core/encseq_ptr.o obj/src/core/endianess.o obj/src/core/error.o obj/src/core/example.o obj/src/core/example_a.o obj/src/core/example_b.o obj/src/core/ezlib.o obj/src/core/fa.o obj/src/core/fasta.o obj/src/core/fasta_reader.o obj/src/core/fasta_reader_fsm.o obj/src/core/fasta_reader_rec.o obj/src/core/fasta_reader_seqit.o obj/src/core/fastq.o obj/src/core/file.o obj/src/core/fileutils.o obj/src/core/gc_content.o obj/src/core/grep.o obj/src/core/gtdatapath.o obj/src/core/hashmap.o obj/src/core/hashtable.o obj/src/core/init.o obj/src/core/interval_tree.o obj/src/core/io.o obj/src/core/log.o obj/src/core/logger.o obj/src/core/ma.o obj/src/core/mapspec.o obj/src/core/mathsupport.o obj/src/core/md5_encoder.o obj/src/core/md5_fingerprint.o obj/src/core/md5_seqid.o obj/src/core/md5_tab.o obj/src/core/msort.o obj/src/core/multithread.o obj/src/core/option.o obj/src/core/orf.o obj/src/core/output_file.o obj/src/core/parseutils.o obj/src/core/password_entry.o obj/src/core/phase.o obj/src/core/process.o obj/src/core/progressbar.o obj/src/core/qsort-ulong.o obj/src/core/qsort_r.o obj/src/core/quality.o obj/src/core/queue.o obj/src/core/radix_sort.o obj/src/core/range.o obj/src/core/readmode.o obj/src/core/safearith.o obj/src/core/score_function.o obj/src/core/score_matrix.o obj/src/core/seq.o obj/src/core/seq_col.o obj/src/core/seq_info_cache.o obj/src/core/seq_iterator.o obj/src/core/seq_iterator_fastq.o obj/src/core/seq_iterator_sequence_buffer.o obj/src/core/sequence_buffer.o obj/src/core/sequence_buffer_dust.o obj/src/core/sequence_buffer_embl.o obj/src/core/sequence_buffer_fasta.o obj/src/core/sequence_buffer_fastq.o obj/src/core/sequence_buffer_gb.o obj/src/core/sequence_buffer_plain.o obj/src/core/showtime.o obj/src/core/sig.o obj/src/core/spacepeak.o obj/src/core/splitter.o obj/src/core/str.o obj/src/core/str_array.o obj/src/core/str_cache.o obj/src/core/strand.o obj/src/core/strcmp.o obj/src/core/string_distri.o obj/src/core/symbol.o obj/src/core/thread.o obj/src/core/timer.o obj/src/core/tokenizer.o obj/src/core/tool.o obj/src/core/tool_iterator.o obj/src/core/toolbox.o obj/src/core/tooldriver.o obj/src/core/trans_table.o obj/src/core/translator.o obj/src/core/unit_testing.o obj/src/core/version.o obj/src/core/versionfunc.o obj/src/core/warning.o obj/src/core/xansi.o obj/src/core/xbsd.o obj/src/core/xbzlib.o obj/src/core/xposix.o obj/src/core/xzlib.o obj/src/core/yarandom.o obj/src/extended/add_ids_stream.o obj/src/extended/add_ids_visitor.o obj/src/extended/add_introns_stream.o obj/src/extended/affinealign.o obj/src/extended/aligned_segment.o obj/src/extended/aligned_segments_pile.o obj/src/extended/alignment.o obj/src/extended/anno_db_gfflike.o obj/src/extended/anno_db_schema.o obj/src/extended/array_in_stream.o obj/src/extended/array_out_stream.o obj/src/extended/assembly_stats_calculator.o obj/src/extended/bed_in_stream.o obj/src/extended/bed_parser.o obj/src/extended/bitinstream.o obj/src/extended/bitoutstream.o obj/src/extended/blast_process_call.o obj/src/extended/buffer_stream.o obj/src/extended/cds_check_stream.o obj/src/extended/cds_check_visitor.o obj/src/extended/cds_stream.o obj/src/extended/cds_visitor.o obj/src/extended/chain.o obj/src/extended/check_boundaries_visitor.o obj/src/extended/chseqids_stream.o obj/src/extended/clustered_set.o obj/src/extended/clustered_set_uf.o obj/src/extended/coin_hmm.o obj/src/extended/collect_ids_visitor.o obj/src/extended/comment_node.o obj/src/extended/compressed_bitsequence.o obj/src/extended/condenseq.o obj/src/extended/condenseq_creator.o obj/src/extended/condenseq_search_arguments.o obj/src/extended/consensus_sa.o obj/src/extended/csa_gene.o obj/src/extended/csa_splice_form.o obj/src/extended/csa_stream.o obj/src/extended/csa_variable_strands.o obj/src/extended/csa_visitor.o obj/src/extended/cstr_iterator.o obj/src/extended/diagonalbandalign.o obj/src/extended/diagonalbandalign_affinegapcost.o obj/src/extended/dice_hmm.o obj/src/extended/dot_out_stream.o obj/src/extended/dot_visitor.o obj/src/extended/dup_feature_stream.o obj/src/extended/dup_feature_visitor.o obj/src/extended/editscript.o obj/src/extended/elias_gamma.o obj/src/extended/encdesc.o obj/src/extended/encdesc_header_io.o obj/src/extended/eof_node.o obj/src/extended/evaluator.o obj/src/extended/extract_feature_sequence.o obj/src/extended/extract_feature_stream.o obj/src/extended/extract_feature_visitor.o obj/src/extended/fasta_header_iterator.o obj/src/extended/feature_in_stream.o obj/src/extended/feature_index.o obj/src/extended/feature_index_memory.o obj/src/extended/feature_info.o obj/src/extended/feature_node.o obj/src/extended/feature_node_iterator.o obj/src/extended/feature_node_observer.o obj/src/extended/feature_out_stream.o obj/src/extended/feature_stream.o obj/src/extended/feature_visitor.o obj/src/extended/gap_str.o obj/src/extended/genome_node.o obj/src/extended/gff3_escaping.o obj/src/extended/gff3_in_stream.o obj/src/extended/gff3_in_stream_plain.o obj/src/extended/gff3_linesorted_out_stream.o obj/src/extended/gff3_numsorted_out_stream.o obj/src/extended/gff3_out_stream.o obj/src/extended/gff3_output.o obj/src/extended/gff3_parser.o obj/src/extended/gff3_visitor.o obj/src/extended/globalchaining.o obj/src/extended/golomb.o obj/src/extended/gtdatahelp.o obj/src/extended/gtf_in_stream.o obj/src/extended/gtf_out_stream.o obj/src/extended/gtf_parser.o obj/src/extended/gtf_visitor.o obj/src/extended/hcr.o obj/src/extended/hmm.o obj/src/extended/hpol_processor.o obj/src/extended/huffcode.o obj/src/extended/id_to_md5_stream.o obj/src/extended/id_to_md5_visitor.o obj/src/extended/inter_feature_stream.o obj/src/extended/inter_feature_visitor.o obj/src/extended/intset.o obj/src/extended/intset_16.o obj/src/extended/intset_32.o obj/src/extended/intset_8.o obj/src/extended/intset_combined.o obj/src/extended/io_function_pointers.o obj/src/extended/kmer_database.o obj/src/extended/linearalign.o obj/src/extended/linearalign_affinegapcost.o obj/src/extended/linspace_management.o obj/src/extended/load_stream.o obj/src/extended/luahelper.o obj/src/extended/luaserialize.o obj/src/extended/mapping.o obj/src/extended/match.o obj/src/extended/match_blast.o obj/src/extended/match_iterator.o obj/src/extended/match_iterator_blast.o obj/src/extended/match_iterator_last.o obj/src/extended/match_iterator_open.o obj/src/extended/match_iterator_sw.o obj/src/extended/match_last.o obj/src/extended/match_open.o obj/src/extended/match_sw.o obj/src/extended/match_visitor.o obj/src/extended/maxcoordvalue.o obj/src/extended/md5_to_id_stream.o obj/src/extended/md5_to_id_visitor.o obj/src/extended/md5set.o obj/src/extended/merge_feature_stream.o obj/src/extended/merge_feature_visitor.o obj/src/extended/merge_stream.o obj/src/extended/meta_node.o obj/src/extended/multi_sanitizer_visitor.o obj/src/extended/multieoplist.o obj/src/extended/mutate.o obj/src/extended/node_stream.o obj/src/extended/node_visitor.o obj/src/extended/obo_parse_tree.o obj/src/extended/obo_stanza.o obj/src/extended/orf_finder_stream.o obj/src/extended/orf_finder_visitor.o obj/src/extended/orf_iterator.o obj/src/extended/orphanage.o obj/src/extended/permute_words.o obj/src/extended/popcount_tab.o obj/src/extended/priority_queue.o obj/src/extended/ranked_list.o obj/src/extended/rbtree.o obj/src/extended/rcr.o obj/src/extended/rdb.o obj/src/extended/rdb_sqlite.o obj/src/extended/rdb_visitor.o obj/src/extended/reconstructalignment.o obj/src/extended/region_mapping.o obj/src/extended/region_node.o obj/src/extended/region_node_builder.o obj/src/extended/regioncov_visitor.o obj/src/extended/regular_seqid.o obj/src/extended/reverse.o obj/src/extended/rmq.o obj/src/extended/safe_popen.o obj/src/extended/sam_alignment.o obj/src/extended/sam_query_name_iterator.o obj/src/extended/samfile_encseq_mapping.o obj/src/extended/samfile_iterator.o obj/src/extended/sampling.o obj/src/extended/scorehandler.o obj/src/extended/script_filter.o obj/src/extended/script_wrapper_stream.o obj/src/extended/script_wrapper_visitor.o obj/src/extended/select_stream.o obj/src/extended/select_visitor.o obj/src/extended/seqid2file.o obj/src/extended/seqid2seqnum_mapping.o obj/src/extended/seqpos_classifier.o obj/src/extended/sequence_node.o obj/src/extended/sequence_node_add_stream.o obj/src/extended/sequence_node_out_stream.o obj/src/extended/sequence_node_out_visitor.o obj/src/extended/set_source_visitor.o obj/src/extended/shredder.o obj/src/extended/snp_annotator_stream.o obj/src/extended/snp_annotator_visitor.o obj/src/extended/sort_stream.o obj/src/extended/spec_results.o obj/src/extended/spec_visitor.o obj/src/extended/splice_site_info_stream.o obj/src/extended/splice_site_info_visitor.o obj/src/extended/splicedseq.o obj/src/extended/squarealign.o obj/src/extended/sspliced_alignment.o obj/src/extended/sspliced_alignment_parsing.o obj/src/extended/stat_stream.o obj/src/extended/stat_visitor.o obj/src/extended/stream_evaluator.o obj/src/extended/string_matching.o obj/src/extended/swalign.o obj/src/extended/tag_value_map.o obj/src/extended/targetbest_select_stream.o obj/src/extended/tidy_region_node_stream.o obj/src/extended/tidy_region_node_visitor.o obj/src/extended/tir_stream.o obj/src/extended/transcript_bittabs.o obj/src/extended/transcript_counts.o obj/src/extended/transcript_evaluators.o obj/src/extended/transcript_exons.o obj/src/extended/transcript_used_exons.o obj/src/extended/type_checker.o obj/src/extended/type_checker_builtin.o obj/src/extended/type_checker_obo.o obj/src/extended/type_graph.o obj/src/extended/type_node.o obj/src/extended/typecheck_info.o obj/src/extended/uint64hashtable.o obj/src/extended/union_find.o obj/src/extended/uniq_stream.o obj/src/extended/visitor_stream.o obj/src/extended/wtree.o obj/src/extended/wtree_encseq.o obj/src/extended/xrf_abbr_entry.o obj/src/extended/xrf_abbr_parse_tree.o obj/src/extended/xrf_checker.o obj/src/extended/xrfcheck_info.o obj/src/gtlua/alphabet_lua.o obj/src/gtlua/annotationsketch_lua.o obj/src/gtlua/bittab_lua.o obj/src/gtlua/canvas_lua.o obj/src/gtlua/cds_stream_lua.o obj/src/gtlua/csa_stream_lua.o obj/src/gtlua/diagram_lua.o obj/src/gtlua/encseq_lua.o obj/src/gtlua/feature_index_lua.o obj/src/gtlua/feature_node_iterator_lua.o obj/src/gtlua/feature_stream_lua.o obj/src/gtlua/feature_visitor_lua.o obj/src/gtlua/genome_node_lua.o obj/src/gtlua/genome_stream_lua.o obj/src/gtlua/genome_visitor_lua.o obj/src/gtlua/gt_lua.o obj/src/gtlua/gtcore_lua.o obj/src/gtlua/gtext_lua.o obj/src/gtlua/image_info_lua.o obj/src/gtlua/layout_lua.o obj/src/gtlua/mathsupport_lua.o obj/src/gtlua/range_lua.o obj/src/gtlua/region_mapping_lua.o obj/src/gtlua/score_matrix_lua.o obj/src/gtlua/stream_evaluator_lua.o obj/src/gtlua/translate_lua.o obj/src/match/apmeoveridx.o obj/src/match/asqg_writer.o obj/src/match/bare-encseq.o obj/src/match/bcktab.o obj/src/match/cgr_spacedseed.o obj/src/match/chain2dim.o obj/src/match/chainofin.o obj/src/match/cutendpfx.o obj/src/match/dbs_spaced_seeds.o obj/src/match/diagband-struct.o obj/src/match/diagbandseed.o obj/src/match/dist-short.o obj/src/match/echoseq.o obj/src/match/eis-blockcomp-param.o obj/src/match/eis-blockcomp.o obj/src/match/eis-bwtseq-construct.o obj/src/match/eis-bwtseq-context-param.o obj/src/match/eis-bwtseq-context.o obj/src/match/eis-bwtseq-extinfo.o obj/src/match/eis-bwtseq-param.o obj/src/match/eis-bwtseq-sass.o obj/src/match/eis-bwtseq.o obj/src/match/eis-encidxseq-construct.o obj/src/match/eis-encidxseq-param.o obj/src/match/eis-encidxseq.o obj/src/match/eis-mrangealphabet.o obj/src/match/eis-sa-common.o obj/src/match/eis-seqblocktranslate.o obj/src/match/eis-seqranges.o obj/src/match/eis-sequencemultiread.o obj/src/match/eis-specialsrank.o obj/src/match/eis-suffixarray-interface.o obj/src/match/eis-suffixerator-interface.o obj/src/match/eis-voiditf.o obj/src/match/encseq2offset.o obj/src/match/enum-patt.o obj/src/match/esa-bottomup.o obj/src/match/esa-dfs.o obj/src/match/esa-lcpintervals.o obj/src/match/esa-map.o obj/src/match/esa-maxpairs.o obj/src/match/esa-merge.o obj/src/match/esa-minunique.o obj/src/match/esa-mmsearch.o obj/src/match/esa-scanprj.o obj/src/match/esa-seqread.o obj/src/match/esa-shulen.o obj/src/match/esa-splititv-simple.o obj/src/match/esa-splititv.o obj/src/match/esa-spmitvs.o obj/src/match/esa-spmsk.o obj/src/match/esa_lcpintervals_visitor.o obj/src/match/esa_spmitvs_visitor.o obj/src/match/esa_visitor.o obj/src/match/firstcodes-accum.o obj/src/match/firstcodes-cache.o obj/src/match/firstcodes-insert.o obj/src/match/firstcodes-psbuf.o obj/src/match/firstcodes-scan.o obj/src/match/firstcodes-spacelog.o obj/src/match/firstcodes-tab.o obj/src/match/firstcodes.o obj/src/match/fmi-fwduni.o obj/src/match/fmi-keyval.o obj/src/match/fmi-locate.o obj/src/match/fmi-map.o obj/src/match/fmi-mapspec.o obj/src/match/fmi-mkindex.o obj/src/match/fmi-save.o obj/src/match/fmi-sufbwtstream.o obj/src/match/ft-eoplist.o obj/src/match/ft-front-generation.o obj/src/match/ft-front-prune.o obj/src/match/ft-polish.o obj/src/match/ft-trimstat.o obj/src/match/gfa_writer.o obj/src/match/giextract.o obj/src/match/greedyedist.o obj/src/match/greedyfwdmat.o obj/src/match/hashfirstcodes.o obj/src/match/hlk-version.o obj/src/match/hplstore.o obj/src/match/idx-limdfs.o obj/src/match/idxlocali.o obj/src/match/idxlocalidp.o obj/src/match/idxlocalisw.o obj/src/match/index_options.o obj/src/match/initbasepower.o obj/src/match/initeqsvec.o obj/src/match/iter-window.o obj/src/match/karlin_altschul_stat.o obj/src/match/kmer2string.o obj/src/match/lua_tools.o obj/src/match/marksubstring.o obj/src/match/merger-trie.o obj/src/match/mssufpat.o obj/src/match/myersapm.o obj/src/match/nullcols.o obj/src/match/optionargmode.o obj/src/match/pck-count-nodes.o obj/src/match/pckbucket.o obj/src/match/pckdfs.o obj/src/match/prsqualint.o obj/src/match/pssm.o obj/src/match/querymatch-align.o obj/src/match/querymatch-display.o obj/src/match/querymatch.o obj/src/match/radixsort_str.o obj/src/match/randomcodes-correct.o obj/src/match/randomcodes-find-seldom.o obj/src/match/randomcodes-hpcorrect.o obj/src/match/randomcodes-insert.o obj/src/match/randomcodes-sfx-partssuf.o obj/src/match/randomcodes-tab.o obj/src/match/randomcodes.o obj/src/match/rdj-cntlist.o obj/src/match/rdj-contfind-bottomup.o obj/src/match/rdj-contfinder.o obj/src/match/rdj-contigpaths.o obj/src/match/rdj-contigs-graph.o obj/src/match/rdj-contigs-writer.o obj/src/match/rdj-errfind.o obj/src/match/rdj-ovlfind-bf.o obj/src/match/rdj-ovlfind-dp.o obj/src/match/rdj-ovlfind-gusfield.o obj/src/match/rdj-ovlfind-kmp.o obj/src/match/rdj-pairwise.o obj/src/match/rdj-spmfind.o obj/src/match/rdj-spmlist.o obj/src/match/rdj-spmproc.o obj/src/match/rdj-strgraph.o obj/src/match/rdj-twobitenc-editor.o obj/src/match/rdj-version.o obj/src/match/reads2twobit.o obj/src/match/reads_libraries_table.o obj/src/match/rectangle-store.o obj/src/match/revcompl.o obj/src/match/seed-extend-iter.o obj/src/match/seed-extend.o obj/src/match/seed_extend_parts.o obj/src/match/seqabstract.o obj/src/match/seqnumrelpos.o obj/src/match/sfx-apfxlen.o obj/src/match/sfx-bentsedg.o obj/src/match/sfx-bltrie.o obj/src/match/sfx-copysort.o obj/src/match/sfx-diffcov.o obj/src/match/sfx-enumcodes.o obj/src/match/sfx-lcpvalues.o obj/src/match/sfx-linlcp.o obj/src/match/sfx-lwcheck.o obj/src/match/sfx-mappedstr.o obj/src/match/sfx-maprange.o obj/src/match/sfx-opt.o obj/src/match/sfx-outprj.o obj/src/match/sfx-partssuf.o obj/src/match/sfx-radixsort.o obj/src/match/sfx-run.o obj/src/match/sfx-sain.o obj/src/match/sfx-shortreadsort.o obj/src/match/sfx-suffixer.o obj/src/match/sfx-suffixgetset.o obj/src/match/sfx-suftaborder.o obj/src/match/shu-dfs.o obj/src/match/shu-divergence.o obj/src/match/shu-encseq-gc.o obj/src/match/shu-genomediff.o obj/src/match/shu_unitfile.o obj/src/match/spaced-seeds.o obj/src/match/specialrank.o obj/src/match/spmsuftab.o obj/src/match/squarededist.o obj/src/match/substriter.o obj/src/match/tagerator.o obj/src/match/test-mappedstr.o obj/src/match/test-maxpairs.o obj/src/match/test-mergeesa.o obj/src/match/test-mtrieins.o obj/src/match/test-pairwise.o obj/src/match/turnwheels.o obj/src/match/twobits2kmers.o obj/src/match/tyr-map.o obj/src/match/tyr-mersplit.o obj/src/match/tyr-mkindex.o obj/src/match/tyr-occratio.o obj/src/match/tyr-search.o obj/src/match/xdrop.o obj/src/ltr/gt_ltrclustering.o obj/src/ltr/gt_ltrdigest.o obj/src/ltr/gt_ltrharvest.o obj/src/ltr/ltr_classify_stream.o obj/src/ltr/ltr_cluster_prepare_seq_visitor.o obj/src/ltr/ltr_cluster_stream.o obj/src/ltr/ltr_four_char_motif.o obj/src/ltr/ltr_input_check_visitor.o obj/src/ltr/ltr_orf_annotator_stream.o obj/src/ltr/ltr_refseq_match_stream.o obj/src/ltr/ltrdigest_file_out_stream.o obj/src/ltr/ltrdigest_pbs_visitor.o obj/src/ltr/ltrdigest_pdom_visitor.o obj/src/ltr/ltrdigest_ppt_visitor.o obj/src/ltr/ltrdigest_strand_assign_visitor.o obj/src/ltr/ltrharvest_fasta_out_stream.o obj/src/ltr/ltrharvest_fasta_out_visitor.o obj/src/ltr/ltrharvest_stream.o obj/src/ltr/ltrharvest_tabout_stream.o obj/src/ltr/ltrharvest_tabout_visitor.o obj/src/ltr/pdom_model_set.o obj/src/mgth/metagenomethreader.o obj/src/mgth/mg_codon.o obj/src/mgth/mg_combinedscore.o obj/src/mgth/mg_compute_gene_prediction.o obj/src/mgth/mg_computepath.o obj/src/mgth/mg_outputwriter.o obj/src/mgth/mg_reverse.o obj/src/mgth/mg_xmlparser.o obj/src/annotationsketch/block.o obj/src/annotationsketch/canvas.o obj/src/annotationsketch/canvas_cairo.o obj/src/annotationsketch/canvas_cairo_context.o obj/src/annotationsketch/canvas_cairo_file.o obj/src/annotationsketch/color.o obj/src/annotationsketch/coords.o obj/src/annotationsketch/custom_track.o obj/src/annotationsketch/custom_track_example.o obj/src/annotationsketch/custom_track_gc_content.o obj/src/annotationsketch/custom_track_script_wrapper.o obj/src/annotationsketch/diagram.o obj/src/annotationsketch/drawing_range.o obj/src/annotationsketch/element.o obj/src/annotationsketch/graphics.o obj/src/annotationsketch/graphics_cairo.o obj/src/annotationsketch/gt_sketch.o obj/src/annotationsketch/gt_sketch_page.o obj/src/annotationsketch/image_info.o obj/src/annotationsketch/layout.o obj/src/annotationsketch/line.o obj/src/annotationsketch/line_breaker.o obj/src/annotationsketch/line_breaker_bases.o obj/src/annotationsketch/line_breaker_captions.o obj/src/annotationsketch/luastyle.o obj/src/annotationsketch/rec_map.o obj/src/annotationsketch/style.o obj/src/annotationsketch/text_width_calculator.o obj/src/annotationsketch/text_width_calculator_cairo.o obj/src/annotationsketch/track.o \ -o lib/libgenometools.so.0 -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -lm -lpthread -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 /usr/lib/libbam.a -cc -c src/examples/sketch_parsed_with_ctrack.c -o obj/src/examples/sketch_parsed_with_ctrack.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/sketch_parsed_with_ctrack.o -cc -c src/examples/sketch_parsed_with_ordering.c -o obj/src/examples/sketch_parsed_with_ordering.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/sketch_parsed_with_ordering.o cc -c src/examples/sketch_parsed.c -o obj/src/examples/sketch_parsed.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/sketch_parsed.o -cc -c src/tools/gt_sortbench.c -o obj/src/tools/gt_sortbench.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_sortbench.o +cc -c src/examples/sketch_constructed.c -o obj/src/examples/sketch_constructed.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/sketch_constructed.o test -d bin || mkdir -p bin test -d bin/examples || mkdir -p bin/examples -test -d bin/examples || mkdir -p bin/examples -test -d bin/examples || mkdir -p bin/examples -test -d bin/examples || mkdir -p bin/examples -cc -Wl,-z,relro -Wl,-z,now -L/usr/local/lib -Llib obj/src/gt.o obj/src/gtr.o obj/src/gtt.o obj/src/interactive.o obj/src/tools/gt_bed_to_gff3.o obj/src/tools/gt_cds.o obj/src/tools/gt_chain2dim.o obj/src/tools/gt_chseqids.o obj/src/tools/gt_clean.o obj/src/tools/gt_compreads.o obj/src/tools/gt_compreads_compress.o obj/src/tools/gt_compreads_decompress.o obj/src/tools/gt_compreads_refcompress.o obj/src/tools/gt_compreads_refdecompress.o obj/src/tools/gt_compressedbits.o obj/src/tools/gt_condenseq.o obj/src/tools/gt_condenseq_blast.o obj/src/tools/gt_condenseq_compress.o obj/src/tools/gt_condenseq_extract.o obj/src/tools/gt_condenseq_hmmsearch.o obj/src/tools/gt_condenseq_info.o obj/src/tools/gt_condenseq_search.o obj/src/tools/gt_congruence.o obj/src/tools/gt_consensus_sa.o obj/src/tools/gt_convertseq.o obj/src/tools/gt_csa.o obj/src/tools/gt_dev.o obj/src/tools/gt_dot.o obj/src/tools/gt_dupfeat.o obj/src/tools/gt_encseq.o obj/src/tools/gt_encseq2spm.o obj/src/tools/gt_encseq_bench.o obj/src/tools/gt_encseq_bitextract.o obj/src/tools/gt_encseq_check.o obj/src/tools/gt_encseq_decode.o obj/src/tools/gt_encseq_encode.o obj/src/tools/gt_encseq_info.o obj/src/tools/gt_encseq_md5.o obj/src/tools/gt_encseq_sample.o obj/src/tools/gt_eval.o obj/src/tools/gt_extractfeat.o obj/src/tools/gt_extractseq.o obj/src/tools/gt_extracttarget.o obj/src/tools/gt_fastq_sample.o obj/src/tools/gt_featureindex.o obj/src/tools/gt_fingerprint.o obj/src/tools/gt_gdiffcalc.o obj/src/tools/gt_genomediff.o obj/src/tools/gt_gff3.o obj/src/tools/gt_gff3_to_gtf.o obj/src/tools/gt_gff3validator.o obj/src/tools/gt_gtf_to_gff3.o obj/src/tools/gt_guessprot.o obj/src/tools/gt_hop.o obj/src/tools/gt_id_to_md5.o obj/src/tools/gt_idxlocali.o obj/src/tools/gt_inlineseq_add.o obj/src/tools/gt_inlineseq_split.o obj/src/tools/gt_interfeat.o obj/src/tools/gt_kmer_database.o obj/src/tools/gt_linspace_align.o obj/src/tools/gt_loccheck.o obj/src/tools/gt_magicmatch.o obj/src/tools/gt_matchtool.o obj/src/tools/gt_matstat.o obj/src/tools/gt_md5_to_id.o obj/src/tools/gt_merge.o obj/src/tools/gt_mergeesa.o obj/src/tools/gt_mergefeat.o obj/src/tools/gt_mgth.o obj/src/tools/gt_mkfeatureindex.o obj/src/tools/gt_mkfmindex.o obj/src/tools/gt_mmapandread.o obj/src/tools/gt_orffinder.o obj/src/tools/gt_packedindex.o obj/src/tools/gt_packedindex_chk_integrity.o obj/src/tools/gt_packedindex_chk_search.o obj/src/tools/gt_packedindex_mkctxmap.o obj/src/tools/gt_packedindex_trsuftab.o obj/src/tools/gt_paircmp.o obj/src/tools/gt_parsexrf.o obj/src/tools/gt_patternmatch.o obj/src/tools/gt_prebwt.o obj/src/tools/gt_readjoiner.o obj/src/tools/gt_readjoiner_asqg.o obj/src/tools/gt_readjoiner_assembly.o obj/src/tools/gt_readjoiner_cgraph.o obj/src/tools/gt_readjoiner_cnttest.o obj/src/tools/gt_readjoiner_correct.o obj/src/tools/gt_readjoiner_gfa.o obj/src/tools/gt_readjoiner_graph.o obj/src/tools/gt_readjoiner_overlap.o obj/src/tools/gt_readjoiner_prefilter.o obj/src/tools/gt_readjoiner_spmtest.o obj/src/tools/gt_readreads.o obj/src/tools/gt_regioncov.o obj/src/tools/gt_repfind.o obj/src/tools/gt_sain.o obj/src/tools/gt_sam_interface.o obj/src/tools/gt_script_filter.o obj/src/tools/gt_seed_extend.o obj/src/tools/gt_select.o obj/src/tools/gt_seq.o obj/src/tools/gt_seqcorrect.o obj/src/tools/gt_seqfilter.o obj/src/tools/gt_seqids.o obj/src/tools/gt_seqlensort.o obj/src/tools/gt_seqmutate.o obj/src/tools/gt_seqorder.o obj/src/tools/gt_seqstat.o obj/src/tools/gt_seqtransform.o obj/src/tools/gt_seqtranslate.o obj/src/tools/gt_sequniq.o obj/src/tools/gt_sfxmap.o obj/src/tools/gt_show_seedext.o obj/src/tools/gt_shredder.o obj/src/tools/gt_shulen.o obj/src/tools/gt_simreads.o obj/src/tools/gt_skproto.o obj/src/tools/gt_snpper.o obj/src/tools/gt_sortbench.o obj/src/tools/gt_speck.o obj/src/tools/gt_splicesiteinfo.o obj/src/tools/gt_splitfasta.o obj/src/tools/gt_stat.o obj/src/tools/gt_suffixerator.o obj/src/tools/gt_tagerator.o obj/src/tools/gt_tallymer.o obj/src/tools/gt_template.o obj/src/tools/gt_tir.o obj/src/tools/gt_trieins.o obj/src/tools/gt_uniq.o obj/src/tools/gt_wtree.o obj/src/tools/gt_wtree_bench.o lib/libgenometools.a -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 -o bin/gt cc -Wl,-z,relro -Wl,-z,now -L/usr/local/lib -Llib obj/src/examples/custom_stream.o lib/libgenometools.a /usr/lib/libbam.a -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 -o bin/examples/custom_stream +cc -Wl,-z,relro -Wl,-z,now -L/usr/local/lib -Llib obj/src/gt.o obj/src/gtr.o obj/src/gtt.o obj/src/interactive.o obj/src/tools/gt_bed_to_gff3.o obj/src/tools/gt_cds.o obj/src/tools/gt_chain2dim.o obj/src/tools/gt_chseqids.o obj/src/tools/gt_clean.o obj/src/tools/gt_compreads.o obj/src/tools/gt_compreads_compress.o obj/src/tools/gt_compreads_decompress.o obj/src/tools/gt_compreads_refcompress.o obj/src/tools/gt_compreads_refdecompress.o obj/src/tools/gt_compressedbits.o obj/src/tools/gt_condenseq.o obj/src/tools/gt_condenseq_blast.o obj/src/tools/gt_condenseq_compress.o obj/src/tools/gt_condenseq_extract.o obj/src/tools/gt_condenseq_hmmsearch.o obj/src/tools/gt_condenseq_info.o obj/src/tools/gt_condenseq_search.o obj/src/tools/gt_congruence.o obj/src/tools/gt_consensus_sa.o obj/src/tools/gt_convertseq.o obj/src/tools/gt_csa.o obj/src/tools/gt_dev.o obj/src/tools/gt_dot.o obj/src/tools/gt_dupfeat.o obj/src/tools/gt_encseq.o obj/src/tools/gt_encseq2spm.o obj/src/tools/gt_encseq_bench.o obj/src/tools/gt_encseq_bitextract.o obj/src/tools/gt_encseq_check.o obj/src/tools/gt_encseq_decode.o obj/src/tools/gt_encseq_encode.o obj/src/tools/gt_encseq_info.o obj/src/tools/gt_encseq_md5.o obj/src/tools/gt_encseq_sample.o obj/src/tools/gt_eval.o obj/src/tools/gt_extractfeat.o obj/src/tools/gt_extractseq.o obj/src/tools/gt_extracttarget.o obj/src/tools/gt_fastq_sample.o obj/src/tools/gt_featureindex.o obj/src/tools/gt_fingerprint.o obj/src/tools/gt_gdiffcalc.o obj/src/tools/gt_genomediff.o obj/src/tools/gt_gff3.o obj/src/tools/gt_gff3_to_gtf.o obj/src/tools/gt_gff3validator.o obj/src/tools/gt_gtf_to_gff3.o obj/src/tools/gt_guessprot.o obj/src/tools/gt_hop.o obj/src/tools/gt_id_to_md5.o obj/src/tools/gt_idxlocali.o obj/src/tools/gt_inlineseq_add.o obj/src/tools/gt_inlineseq_split.o obj/src/tools/gt_interfeat.o obj/src/tools/gt_kmer_database.o obj/src/tools/gt_linspace_align.o obj/src/tools/gt_loccheck.o obj/src/tools/gt_magicmatch.o obj/src/tools/gt_matchtool.o obj/src/tools/gt_matstat.o obj/src/tools/gt_md5_to_id.o obj/src/tools/gt_merge.o obj/src/tools/gt_mergeesa.o obj/src/tools/gt_mergefeat.o obj/src/tools/gt_mgth.o obj/src/tools/gt_mkfeatureindex.o obj/src/tools/gt_mkfmindex.o obj/src/tools/gt_mmapandread.o obj/src/tools/gt_orffinder.o obj/src/tools/gt_packedindex.o obj/src/tools/gt_packedindex_chk_integrity.o obj/src/tools/gt_packedindex_chk_search.o obj/src/tools/gt_packedindex_mkctxmap.o obj/src/tools/gt_packedindex_trsuftab.o obj/src/tools/gt_paircmp.o obj/src/tools/gt_parsexrf.o obj/src/tools/gt_patternmatch.o obj/src/tools/gt_prebwt.o obj/src/tools/gt_readjoiner.o obj/src/tools/gt_readjoiner_asqg.o obj/src/tools/gt_readjoiner_assembly.o obj/src/tools/gt_readjoiner_cgraph.o obj/src/tools/gt_readjoiner_cnttest.o obj/src/tools/gt_readjoiner_correct.o obj/src/tools/gt_readjoiner_gfa.o obj/src/tools/gt_readjoiner_graph.o obj/src/tools/gt_readjoiner_overlap.o obj/src/tools/gt_readjoiner_prefilter.o obj/src/tools/gt_readjoiner_spmtest.o obj/src/tools/gt_readreads.o obj/src/tools/gt_regioncov.o obj/src/tools/gt_repfind.o obj/src/tools/gt_sain.o obj/src/tools/gt_sam_interface.o obj/src/tools/gt_script_filter.o obj/src/tools/gt_seed_extend.o obj/src/tools/gt_select.o obj/src/tools/gt_seq.o obj/src/tools/gt_seqcorrect.o obj/src/tools/gt_seqfilter.o obj/src/tools/gt_seqids.o obj/src/tools/gt_seqlensort.o obj/src/tools/gt_seqmutate.o obj/src/tools/gt_seqorder.o obj/src/tools/gt_seqstat.o obj/src/tools/gt_seqtransform.o obj/src/tools/gt_seqtranslate.o obj/src/tools/gt_sequniq.o obj/src/tools/gt_sfxmap.o obj/src/tools/gt_show_seedext.o obj/src/tools/gt_shredder.o obj/src/tools/gt_shulen.o obj/src/tools/gt_simreads.o obj/src/tools/gt_skproto.o obj/src/tools/gt_snpper.o obj/src/tools/gt_sortbench.o obj/src/tools/gt_speck.o obj/src/tools/gt_splicesiteinfo.o obj/src/tools/gt_splitfasta.o obj/src/tools/gt_stat.o obj/src/tools/gt_suffixerator.o obj/src/tools/gt_tagerator.o obj/src/tools/gt_tallymer.o obj/src/tools/gt_template.o obj/src/tools/gt_tir.o obj/src/tools/gt_trieins.o obj/src/tools/gt_uniq.o obj/src/tools/gt_wtree.o obj/src/tools/gt_wtree_bench.o lib/libgenometools.a -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 -o bin/gt +test -d bin/examples || mkdir -p bin/examples cc -Wl,-z,relro -Wl,-z,now -L/usr/local/lib -Llib obj/src/examples/gff3sort.o lib/libgenometools.a /usr/lib/libbam.a -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 -o bin/examples/gff3sort +test -d bin/examples || mkdir -p bin/examples cc -Wl,-z,relro -Wl,-z,now -L/usr/local/lib -Llib obj/src/examples/gff3validator.o lib/libgenometools.a /usr/lib/libbam.a -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 -o bin/examples/gff3validator +test -d bin/examples || mkdir -p bin/examples cc -Wl,-z,relro -Wl,-z,now -L/usr/local/lib -Llib obj/src/examples/noop.o lib/libgenometools.a /usr/lib/libbam.a -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 -o bin/examples/noop test -d bin/examples || mkdir -p bin/examples cc -Wl,-z,relro -Wl,-z,now -L/usr/local/lib -Llib obj/src/examples/sketch_constructed.o lib/libgenometools.a /usr/lib/libbam.a -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 -o bin/examples/sketch_constructed @@ -8220,34 +8256,26 @@ make[3]: Entering directory '/build/reproducible-path/genometools-1.6.5+ds/doc/manuals' test -e readjoiner-pdf.aux && mv readjoiner-pdf.aux readjoiner.aux test -e hop-pdf.aux && mv hop-pdf.aux hop.aux -test -e ltrharvest-pdf.aux && mv ltrharvest-pdf.aux ltrharvest.aux -test -e ltrdigest-pdf.aux && mv ltrdigest-pdf.aux ltrdigest.aux make[3]: [Makefile:39: readjoiner-pdf.aux] Error 1 (ignored) pdflatex readjoiner.tex && rm readjoiner.pdf make[3]: [Makefile:40: hop-pdf.aux] Error 1 (ignored) pdflatex hop.tex && rm hop.pdf -test -e uniquesub-pdf.aux && mv uniquesub-pdf.aux uniquesub.aux +test -e ltrharvest-pdf.aux && mv ltrharvest-pdf.aux ltrharvest.aux +faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... make[3]: [Makefile:39: ltrharvest-pdf.aux] Error 1 (ignored) pdflatex ltrharvest.tex && rm ltrharvest.pdf -make[3]: [Makefile:40: ltrdigest-pdf.aux] Error 1 (ignored) +test -e ltrdigest-pdf.aux && mv ltrdigest-pdf.aux ltrdigest.aux +make[3]: [Makefile:39: ltrdigest-pdf.aux] Error 1 (ignored) pdflatex ltrdigest.tex && rm ltrdigest.pdf -test -e matstat-pdf.aux && mv matstat-pdf.aux matstat.aux +test -e uniquesub-pdf.aux && mv uniquesub-pdf.aux uniquesub.aux make[3]: [Makefile:39: uniquesub-pdf.aux] Error 1 (ignored) pdflatex uniquesub.tex && rm uniquesub.pdf -make[3]: [Makefile:40: matstat-pdf.aux] Error 1 (ignored) -pdflatex matstat.tex && rm matstat.pdf -faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. -This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. +faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... +faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. 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+(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)entering extended mode +(./ltrharvest.tex +LaTeX2e <2024-06-01> patch level 2 +L3 programming layer <2024-08-16> +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls) +Document Class: article 2024/02/08 v1.4n Standard LaTeX document class +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty))) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty) No file readjoiner.aux. *geometry* driver: auto-detecting *geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map -No file uniquesub.aux. -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) -No file ltrdigest.aux. +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstpatch.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg))) +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (./optionman.sty +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)entering extended mode +(./uniquesub.tex +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty +LaTeX2e <2024-06-01> patch level 2 +L3 programming layer <2024-08-16> +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls +Document Class: article 2024/02/08 v1.4n Standard LaTeX document class +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def))) +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstpatch.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg +No file hop.aux. *geometry* driver: auto-detecting *geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) -Underfull \hbox (badness 10000) in paragraph at lines 47--47 -[]$\OT1/pcr/m/n/14.4 http : / / nar . oxfordjournals . org / cgi / content / +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd))) +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty +[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map)) (./optionman.sty) +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty} +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstpatch.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty{)/usr/share/texlive/texmf- +dist/fonts/enc/dvips/base/8r.enc}] +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg) -[1 -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map) +LaTeX Warning: Citation `EKW07' on page 1 undefined on input line 54. + + +Overfull \hbox (12.44974pt too wide) in paragraph at lines 52--56 +\OT1/ptm/m/n/12 se-quence fea-tures of LTR retro-trans-posons in pre-dicted can +-di-dates, like those re-ported by\OT1/ptm/m/it/12 LTRharvest \OT1/ptm/m/n/12 [ +[]]. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) -LaTeX Warning: Citation `GRAE:NIE:KUR:HUY:BIR:STU:FLI:2007' on page 1 undefined - on input line 64. +LaTeX Warning: Citation `gff3' on page 1 undefined on input line 69. -[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map) -No file matstat.aux. -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) -[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}{/usr/share/texlive/texmf- -dist/fonts/enc/dvips/base/8r.enc}] +LaTeX Warning: Citation `genometools' on page 1 undefined on input line 75. -LaTeX Warning: Citation `HOP' on page 1 undefined on input line 42. +LaTeX Warning: Citation `hmmer' on page 1 undefined on input line 78. -LaTeX Warning: Citation `genometools' on page 1 undefined on input line 71. +LaTeX Warning: Citation `pfam' on page 1 undefined on input line 80. -[1] -Overfull \hbox (37.48308pt too wide) in paragraph at lines 132--140 -[]\OT1/ptm/m/n/12 It is usu-ally quite easy to pre-pare the map-ping as re-quir -ed. Say the reads to be cor-rected are \OT1/pcr/m/n/12 f[]reads.fastq -Overfull \hbox (32.30313pt too wide) in paragraph at lines 146--146 -[]\OT1/pcr/m/n/10 > bwa sampe cognate.fas -f map.sam f_reads.sai r_reads.sai f_ -reads.fastq r_reads.fastq[] +LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 106. -[2] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) -Overfull \hbox (14.55139pt too wide) in paragraph at lines 208--213 -\OT1/ptm/m/n/12 The pre-fix added by HOP (in this case \OT1/pcr/m/n/12 hop\OT1/ -ptm/m/n/12 , which is the de-fault) can be changed us-ing the \OT1/pcr/m/n/12 - -outprefix -[3] -[4] (./hop.aux) +[1 (./optionman.sty)] +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) +No file ltrharvest.aux. +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)) +[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map -LaTeX Warning: There were undefined references. +LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 120. -LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. +LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 127. - ) -(see the transcript file for additional information) -Output written on hop.pdf (5 pages, 70378 bytes). -Transcript written on hop.log. -mv hop.aux hop-pdf.aux -test -e mgth-pdf.aux && mv mgth-pdf.aux mgth.aux -make[3]: [Makefile:39: mgth-pdf.aux] Error 1 (ignored) -pdflatex mgth.tex && rm mgth.pdf -}}{/usr/share/texlive/texmf- -dist/fonts/enc/dvips/base/8r.enc}{/usr/share/texlive/texmf- -dist/fonts/enc/dvips/base/8r.enc}]]faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... +LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 134. -LaTeX Warning: Citation `LTRharvesturl' on page 1 undefined on input line 51. +LaTeX Warning: Reference `overviewOpt' on page 2 undefined on input line 166. -LaTeX Warning: Citation `EKW07' on page 1 undefined on input line 53. +[2 +No file uniquesub.aux. +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd)] +[3] +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) +[4] + +LaTeX Warning: Citation `GRAE:NIE:KUR:HUY:BIR:STU:FLI:2007' on page 1 undefined + on input line 64. -LaTeX Warning: Citation `AKO04' on page 1 undefined on input line 57. +[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map +Overfull \hbox (18.22491pt too wide) in paragraph at lines 283--291 +\OT1/ptm/m/n/12 trans-po-son it-self (\OT1/pcr/m/n/12 LTR[]retrotransposon \OT1 +/ptm/m/n/12 type) and the pre-dicted LTRs (\OT1/pcr/m/n/12 long[]terminal[]repe +at -LaTeX Warning: Citation `genometools' on page 1 undefined on input line 71. +Underfull \hbox (badness 10000) in paragraph at lines 283--291 -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) + +[5] +[6}{/usr/share/texlive/texmf- +dist/fonts/enc/dvips/base/8r.enc}]] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omspcr.fd) +[7 LaTeX Warning: Citation `MYE:2005' on page 1 undefined on input line 57. @@ -8496,78 +8495,112 @@ []\OT1/ptm/m/n/12 The \OT1/ptm/m/it/12 Read-joiner \OT1/ptm/m/n/12 tools are ru n us-ing the fol-low-ing syn-tax: \OT1/pcr/m/n/12 gt readjoiner \OT1/ptm/m/n/12 , -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)] [1] - -LaTeX Warning: Reference `overviewOpt' on page 1 undefined on input line 106. - - -LaTeX Warning: Reference `Examples' on page 1 undefined on input line 205. - - -[1 +[8] Underfull \hbox (badness 4132) in paragraph at lines 185--188 []\OT1/ptm/m/n/12 a single-end li-brary plus an in-ter-leaved -[2}{/usr/share/texlive/texmf- -dist/fonts/enc/dvips/base/8r.enc]}] +[2 +Overfull \hbox (34.70291pt too wide) in paragraph at lines 564--565 +[]\OT1/pcr/m/n/12 gt suffixerator -tis -des -dna -ssp -db genome.fas -indexname + genome.fas -LaTeX Warning: Citation `MYE:2005' on page 3 undefined on input line 211. +Overfull \hbox (6.71515pt too wide) in paragraph at lines 570--576 +[]\OT1/ptm/m/n/12 We will also as-sume that the HMM files to be used are called + \OT1/pcr/m/n/12 HMM1.hmm\OT1/ptm/m/n/12 , \OT1/pcr/m/n/12 HMM2.hmm \OT1/ptm/m/ +n/12 and \OT1/pcr/m/n/12 HMM3.hmm\OT1/ptm/m/n/12 , +Overfull \hbox (24.62292pt too wide) in paragraph at lines 577--587 +\OT1/pcr/m/n/12 -hmms HMM*.hmm -outfileprefix mygenome-ltrs ltrs[]sorted.gff3 g +enome.fas -[3] -[2] +[9] -LaTeX Warning: Citation `EKW07' on page 1 undefined on input line 54. +LaTeX Warning: Citation `MYE:2005' on page 3 undefined on input line 211. -Overfull \hbox (12.44974pt too wide) in paragraph at lines 52--56 -\OT1/ptm/m/n/12 se-quence fea-tures of LTR retro-trans-posons in pre-dicted can --di-dates, like those re-ported by\OT1/ptm/m/it/12 LTRharvest \OT1/ptm/m/n/12 [ -[]]. -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)]}{/usr/share/texlive/texmf- -dist/fonts/enc/dvips/base/8r.enc} +[3]] +[10] (./ltrdigest.aux) -LaTeX Warning: Citation `MYE:2005' on page 4 undefined on input line 261. +LaTeX Warning: There were undefined references. -[4]] +LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. -LaTeX Warning: Citation `gff3' on page 1 undefined on input line 69. + ) +(see the transcript file for additional information)]/usr/share/texlive/texmf-d +ist/fonts/type1/public/amsfonts/cm/cmmi12.pfb>>>>< +/usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmri8a.pfb}{/usr/share/texlive/texmf- +dist/fonts/enc/dvips/base/8r.enc}]> +Output written on readjoiner.pdf (8 pages, 116067 bytes). +Transcript written on readjoiner.log. -LaTeX Warning: Citation `gff3' on page 3 undefined on input line 249. +LaTeX Warning: Citation `HOP' on page 1 undefined on input line 42. -[3] -LaTeX Warning: Citation `Edena' on page 5 undefined on input line 328. +LaTeX Warning: Citation `genometools' on page 1 undefined on input line 71. -[5]] +[1}{/usr/share/texlive/texmf- +dist/fonts/enc/dvips/base/8r.enc}]] Overfull \hbox (8.18253pt too wide) in paragraph at lines 129--133 \OT1/ptm/m/n/12 loaded from $\OT1/pcr/m/n/12 ftp : / / ftp . ensembl . org / pu b / current _ fasta / homo _ sapiens _ 47 _ 36i / -[2 -[4] -[6]] -[3] -[7] (./uniquesub.aux) (./readjoiner.aux) +[2mv readjoiner.aux readjoiner-pdf.aux + +Overfull \hbox (37.48308pt too wide) in paragraph at lines 132--140 +[]\OT1/ptm/m/n/12 It is usu-ally quite easy to pre-pare the map-ping as re-quir +ed. Say the reads to be cor-rected are \OT1/pcr/m/n/12 f[]reads.fastq + +Overfull \hbox (32.30313pt too wide) in paragraph at lines 146--146 +[]\OT1/pcr/m/n/10 > bwa sampe cognate.fas -f map.sam f_reads.sai r_reads.sai f_ +reads.fastq r_reads.fastq[] + +[2]test -e matstat-pdf.aux && mv matstat-pdf.aux matstat.aux +] +[3] (./uniquesub.aux) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) LaTeX Warning: There were undefined references. @@ -8576,7 +8609,37 @@ ) (see the transcript file for additional information) +[4]< (./hop.aux/usr/share/texlive/texmf-dis +t/fonts/type1/urw/times/utmri8a.pfb) LaTeX Warning: There were undefined references. @@ -8585,32 +8648,43 @@ ) (see the transcript file for additional information) +ist/fonts/type1/urw/courier/ucrr8a.pfb>>]faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... +Output written on uniquesub.pdf (3 pages, 106254 bytes). +Transcript written on uniquesub.log. -LaTeX Warning: Reference `overviewOpt' on page 2 undefined on input line 166. +LaTeX Warning: Citation `gff3' on page 3 undefined on input line 249. + + +[3 +Output written on hop.pdf (5 pages, 70378 bytes). +Transcript written on hop.log. +mv uniquesub.aux uniquesub-pdf.aux +test -e mgth-pdf.aux && mv mgth-pdf.aux mgth.aux +]mv hop.aux hop-pdf.aux +make[3]: [Makefile:41: mgth-pdf.aux] Error 1 (ignored) +pdflatex mgth.tex && rm mgth.pdf + +[4]test -e packedindex-pdf.aux && mv packedindex-pdf.aux packedindex.aux +make[3]: [Makefile:39: packedindex-pdf.aux] Error 1 (ignored) +pdflatex packedindex.tex && rm packedindex.pdf + +[5] +Output written on ltrdigest.pdf (11 pages, 198479 bytes). +Transcript written on ltrdigest.log. -[2]>> LaTeX Warning: Reference `different-options' on page 6 undefined on input line 493. @@ -8627,9 +8701,8 @@ LaTeX Warning: Citation `vmatch' on page 6 undefined on input line 502. -[6 +[6]faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... + Overfull \hbox (38.30313pt too wide) in paragraph at lines 545--545 []\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) s(rLTR) e(rLTR ) l(rLTR) sim(LTRs) seq-nr[] @@ -8638,19 +8711,7 @@ []\OT1/pcr/m/n/10 # args=-index chr02.19970727.fsa -v -out pred-chr02.fsa -outi nner pred-inner-chr02.fsa[] -[7 -Overfull \hbox (18.22491pt too wide) in paragraph at lines 283--291 -\OT1/ptm/m/n/12 trans-po-son it-self (\OT1/pcr/m/n/12 LTR[]retrotransposon \OT1 -/ptm/m/n/12 type) and the pre-dicted LTRs (\OT1/pcr/m/n/12 long[]terminal[]repe -at - -Underfull \hbox (badness 10000) in paragraph at lines 283--291 - - -[5>> +[7] Overfull \hbox (38.30313pt too wide) in paragraph at lines 605--605 []\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) s(rLTR) e(rLTR ) l(rLTR) sim(LTRs) seq-nr[] @@ -8664,7 +8725,6 @@ mat 2 -mis -2 -ins -3 [8] -[6 Overfull \hbox (266.30313pt too wide) in paragraph at lines 666--666 []\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) TSD l(TSD) m(l LTR) s(rLTR) e(rLTR) l(rLTR) TSD l(TSD) m(rLTR) sim(LTRs) seq-nr[] @@ -8676,7 +8736,7 @@ []\OT1/pcr/m/n/10 $ gt ltrharvest -index chrAll.19971001.fsa -seed 100 -minlenl tr 100 -maxlenltr 1000 -[9]] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omspcr.fd) +[9] LaTeX Warning: Citation `vmatch' on page 10 undefined on input line 770. @@ -8692,14 +8752,11 @@ LaTeX Warning: Citation `vmatch' on page 10 undefined on input line 792. -[10] -[7] -Output written on uniquesub.pdf (3 pages, 106254 bytes). -Transcript written on uniquesub.log. - -Output written on readjoiner.pdf (8 pages, 116067 bytes). -Transcript written on readjoiner.log. - +[10mv ltrdigest.aux ltrdigest-pdf.aux +test -e repfind-pdf.aux && mv repfind-pdf.aux repfind.aux +make[3]: [Makefile:39: repfind-pdf.aux] Error 1 (ignored) +pdflatex repfind.tex && rm repfind.pdf +] Underfull \hbox (badness 10000) in paragraph at lines 824--826 []\OT1/ptm/m/sc/12 GFF3\OT1/ptm/m/n/12 , tab de-lim-ited file for-mat for genom e an-no-ta-tion. $\OT1/pcr/m/n/12 http : / / www . @@ -8708,48 +8765,8 @@ [][] [11] -[12This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. -] (./ltrharvest.aux) -[8 +[12] (./ltrharvest.aux)faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -LaTeX Warning: There were undefined references. - - -LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. - - ) -(see the transcript file for additional information)mv uniquesub.aux uniquesub-pdf.aux -] -[10> ->>}{/usr/share/texlive/texmf- -dist/fonts/enc/dvips/base/8r.encfaketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... ->}>< (./matstat.aux/usr/share/texlive/texmf-dist/fonts/type1/urw/time -s/utmbi8a.pfb) ) -(see the transcript file for additional information)>< -/usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmri8a.pfb> +This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. + Output written on ltrharvest.pdf (13 pages, 171089 bytes). Transcript written on ltrharvest.log. -> read1.fna ->echo ">" > read2.fna +mv ltrharvest.aux ltrharvest-pdf.aux +head -n 6999 ../../testdata/at1MB > read1.fna +echo ">" > read2.fna +This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. tail -n 6945 ../../testdata/at1MB >> read2.fna - -Output written on ltrdigest.pdf (11 pages, 198479 bytes). -Transcript written on ltrdigest.log. +This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. cp ../../testdata/U89959_genomic.fas U89959.fna ../../bin/gt packedindex mkindex -dna -dir rev -parts 12 -bsize 10 \ -sprank -locfreq 32 -tis -ssp -indexname pck-human\ -db ../../testdata/at1MB -mv ltrdigest.aux ltrdigest-pdf.aux -cp ../../testdata/Q1.gz Q1.gz -test -e genomediff-pdf.aux && mv genomediff-pdf.aux genomediff.aux - -Output written on matstat.pdf (2 pages, 100174 bytes). -Transcript written on matstat.log. -make[3]: [Makefile:39: genomediff-pdf.aux] Error 1 (ignored) -pdflatex genomediff.tex && rm genomediff.pdf -mv matstat.aux matstat-pdf.aux -test -e readjoiner-pdf.aux && mv readjoiner-pdf.aux readjoiner.aux -faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -bibtex readjoiner -This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. -This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. entering extended mode (./mgth.tex LaTeX2e <2024-06-01> patch level 2 @@ -8833,151 +8816,115 @@ (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. -) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)This is BibTeX, Version 0.99d (TeX Live 2025/dev/Debian) -The top-level auxiliary file: readjoiner.aux -I found no \bibdata command---while reading file readjoiner.aux -I found no \bibstyle command---while reading file readjoiner.aux -(There were 2 error messages) -make[3]: [Makefile:33: readjoiner-pdf.bbl] Error 2 (ignored) -test -e readjoiner-pdf.bbl || touch readjoiner-pdf.bbl - +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)entering extended mode +(./matstat.tex (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)diff readjoiner-pdf.bbl readjoiner.bbl || mv readjoiner.bbl readjoiner-pdf.bbl && rm -f readjoiner.bbl - -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.stymv readjoiner.aux readjoiner-pdf.aux -test -e hop-pdf.aux && mv hop-pdf.aux hop.aux -bibtex hop - +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) +LaTeX2e <2024-06-01> patch level 2 +L3 programming layer <2024-08-16> 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+(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) (./optionman.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty) No file mgth.aux. *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def [Loading MPS to PDF converter (version 2006.09.02).] -) -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.styThis is BibTeX, Version 0.99d (TeX Live 2025/dev/Debian) -The top-level auxiliary file: hop.aux -I found no \bibdata command---while reading file hop.aux -I found no \bibstyle command---while reading file hop.aux -(There were 2 error messages) -) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.stymake[3]: [Makefile:33: hop-pdf.bbl] Error 2 (ignored) -test -e hop-pdf.bbl || touch hop-pdf.bbl - -(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty)))diff hop-pdf.bbl hop.bbl || mv hop.bbl hop-pdf.bbl && rm -f hop.bbl - -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)) -[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.mapmv hop.aux hop-pdf.aux - -(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.stytest -e ltrharvest-pdf.aux && mv ltrharvest-pdf.aux ltrharvest.aux - (./optionman.sty)bibtex ltrharvest - +) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty +(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))) (/usr/share/texlive/texmf-dist/tex/latex/listings/lstpatch.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.defentering extended mode -(./genomediff.tex) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg))) -LaTeX2e <2024-06-01> patch level 2 -L3 programming layer <2024-08-16> -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls -Document Class: article 2024/02/08 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo -No file repfind.aux. +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) +[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map +No file matstat.aux. *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty))) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg))) +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (/usr/share/texlive/texmf-dist/tex/latex/comment/comment.sty -Excluding comment 'comment')) (./optionman.sty) +Excluding comment 'comment') (./optionman.sty) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty) -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) No file packedindex.aux. *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) -[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map) -(/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty) -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.styThis is BibTeX, Version 0.99d (TeX Live 2025/dev/Debian) -The top-level auxiliary file: ltrharvest.aux -I found no \bibdata command---while reading file ltrharvest.aux -I found no \bibstyle command---while reading file ltrharvest.aux -(There were 2 error messages) -make[3]: [Makefile:33: ltrharvest-pdf.bbl] Error 2 (ignored) -test -e ltrharvest-pdf.bbl || touch ltrharvest-pdf.bbl -diff ltrharvest-pdf.bbl ltrharvest.bbl || mv ltrharvest.bbl ltrharvest-pdf.bbl && rm -f ltrharvest.bbl -mv ltrharvest.aux ltrharvest-pdf.aux -test -e ltrdigest-pdf.aux && mv ltrdigest-pdf.aux ltrdigest.aux - -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstpatch.sty)bibtex ltrdigest - -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) -(./optionman.sty) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) -(/usr/share/texlive/texmf-dist/tex/latex/booktabs/booktabs.sty) -(/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty}{/usr/share/texlive/texmf- -dist/fonts/enc/dvips/base/8r.enc}] +[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.mapentering extended mode +(./repfind.tex +LaTeX2e <2024-06-01> patch level 2 +L3 programming layer <2024-08-16> +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls +Document Class: article 2024/02/08 v1.4n Standard LaTeX document class +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty}{/usr/share/texlive/texmf- +dist/fonts/enc/dvips/base/8r.enc})] LaTeX Warning: Citation `krause' on page 1 undefined on input line 51. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty LaTeX Warning: Citation `genometools' on page 1 undefined on input line 58. -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) -(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) -(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)) +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) LaTeX Warning: Citation `genometools' on page 1 undefined on input line 98. @@ -8987,8 +8934,7 @@ ions). There are two dif-fer-ent in-stal-la-tion op-tions for the \OT1/ptm/m/it /12 Genome- -[1]) -(/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx) +[1] (./optionman.sty) LaTeX Warning: Reference `overviewOpt' on page 2 undefined on input line 123. @@ -8998,17 +8944,17 @@ d BLAST-hit file, \OT1/pcr/m/n/10.95 Metagenome-Filename \OT1/ptm/m/n/12 the FA STA -[2]) +[2] +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd Overfull \hbox (1.2452pt too wide) in paragraph at lines 256--257 []\OT1/ptm/m/n/12 . If this op- LaTeX Warning: Reference `Examples' on page 3 undefined on input line 263. -[3 -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty]}{/usr/share/texlive/texmf- -dist/fonts/enc/dvips/base/8r.enc} (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omlptm.fd) -[4]]) +[3]) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omlptm.fd) +[4)] Overfull \hbox (13.12135pt too wide) in paragraph at lines 439--439 []\OT1/ptm/m/n/10.95 tataaaatagccaaatctgagcctaaaagcccttggatatccatgatttagaacgaac catcccctcttattcaggagaagttttctgaactcttcaacatcctcga...| @@ -9016,9 +8962,7 @@ Overfull \hbox (7.99995pt too wide) in paragraph at lines 429--443 [] -[5 -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty] -[2] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) +[5] Overfull \hbox (13.12135pt too wide) in paragraph at lines 452--452 []\OT1/ptm/m/n/10.95 tataaaatagccaaatctgagcctaaaagcccttggatatccatgatttagaacgaac catcccctcttattcaggagaagttttctgaactcttcaacatcctcga...| @@ -9051,29 +8995,27 @@ Overfull \hbox (1.15051pt too wide) in paragraph at lines 509--509 []\OT1/ptm/m/n/12 - -[6] -[7] -Overfull \hbox (72.74506pt too wide) in paragraph at lines 126--129 -[]\OT1/ptm/m/n/12 Suppose the in-put se-quence $\OML/cmm/m/it/12 S \OT1/cmr/m/n -/12 = \OML/cmm/m/it/12 gagctcgagcgctgct$ \OT1/ptm/m/n/12 is con-tained in the f -ile \OT1/pcr/m/n/12 Repfind-example.fna\OT1/ptm/m/n/12 . +[6 +No file repfind.aux. +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd)}] +[7{/usr/share/texlive/texmf- +dist/fonts/enc/dvips/base/8r.enc}] +[1 -Overfull \hbox (91.74632pt too wide) in paragraph at lines 130--130 -[]\OT1/pcr/m/n/10 gt suffixerator -db repfinf-sample.seq -indexname repidx -dna - -suf -tis -lcp -ssp -pl +LaTeX Warning: Citation `oai:CiteSeerPSU:481302' on page 1 undefined on input l +ine 51. -[3 (./mgth.aux)]This is BibTeX, Version 0.99d (TeX Live 2025/dev/Debian) -The top-level auxiliary file: ltrdigest.aux -The style file: unsrt.bst -I found no \bibdata command---while reading file ltrdigest.aux -Warning--I didn't find a database entry for "EKW07" -Warning--I didn't find a database entry for "gff3" -Warning--I didn't find a database entry for "genometools" -Warning--I didn't find a database entry for "hmmer" -Warning--I didn't find a database entry for "pfam" -(There was 1 error message) + +LaTeX Warning: Citation `journals/talg/FerraginaMMN07' on page 1 undefined on i +nput line 53. +LaTeX Warning: Citation `genometools' on page 1 undefined on input line 56. + +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd] (./mgth.aux) + LaTeX Warning: There were undefined references. @@ -9081,123 +9023,144 @@ ) (see the transcript file for additional information) -Overfull \hbox (5.17455pt too wide) in paragraph at lines 163--166 -[]\OT1/ptm/m/n/12 Kurtz, S., Choud-huri, J. V., Ohle-busch, E., Schleier-ma-che -r, C., Stoye, J., Giegerich, - -LaTeX Warning: Reference `forwardEQ' on page 4 undefined on input line 196. +ist/fonts/type1/public/amsfonts/cm/cmmi10.pfb>){/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map +[1] +[2<]/usr/share/texlive/texmf-dist/fonts/type1/u +rw/times/utmri8a.pfb> +Overfull \hbox (5.0115pt too wide) in paragraph at lines 252--257 +\OT1/ptm/m/n/12 The \OT1/pcr/b/n/12 mkctxmap \OT1/ptm/m/n/12 sub-tool fa-cil-i- +tates late build-ing of a re-verse lookup ta-ble, it can use the \OT1/pcr/m/sl/ +12 prefix.suf -LaTeX Warning: Reference `reversedEQ' on page 4 undefined on input line 196. +LaTeX Warning: Reference `sec:packedindex:mkindex' on page 3 undefined on input + line 278. +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/omsptm.fd)}{/usr/share/texlive/texmf- +dist/fonts/enc/dvips/base/8r.enc} +[3]] -LaTeX Warning: Reference `forwardEQ' on page 4 undefined on input line 200. +LaTeX Warning: Reference `sec:packedindex:examples' on page 4 undefined on inpu +t line 310. -LaTeX Warning: Reference `reversedEQ' on page 4 undefined on input line 200. +[4] +Output written on mgth.pdf (8 pages, 140780 bytes). +Transcript written on mgth.log. +Overfull \hbox (8.18253pt too wide) in paragraph at lines 122--126 +\OT1/ptm/m/n/12 loaded from $\OT1/pcr/m/n/12 ftp : / / ftp . ensembl . org / pu +b / current _ fasta / homo _ sapiens _ 47 _ 36i / -[4] +[2 -LaTeX Warning: There were undefined references. +LaTeX Warning: Citation `gttestdata' on page 5 undefined on input line 432. -LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. +Overfull \hbox (37.00337pt too wide) in paragraph at lines 441--445 +[]\OT1/ptm/m/n/12 First com-pute the \OT1/ptm/m/it/12 packedin-dex \OT1/ptm/m/n +/12 in-dex file (this as-sumes \OT1/pcr/m/sl/12 chr01.19960731.fsa.gz \OT1/ptm/ +m/n/12 has been copied/linked - ) +[5] (./matstat.aux)] ) (see the transcript file for additional information) \begin{thebibliography}{} -> -> \end{thebibliography} ->mv ltrdigest.aux ltrdigest-pdf.aux - ->test -e uniquesub-pdf.aux && mv uniquesub-pdf.aux uniquesub.aux -bibtex uniquesub - -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def>)}{/usr/share/texlive/texmf- -dist/fonts/enc/dvips/base/8r.enc}] - -LaTeX Warning: Citation `oai:CiteSeerPSU:481302' on page 1 undefined on input l -ine 51. +ist/fonts/type1/public/amsfonts/cm/cmmi12.pfb>>></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmb8a.pfb>cp ../../testdata/Q1.gz Q1.gz -[Loading MPS to PDF converter (version 2006.09.02).] -) -[1mv mgth.aux mgth-pdf.aux -]test -e matstat-pdf.aux && mv matstat-pdf.aux matstat.aux +Output written on packedindex.pdf (7 pages, 169097 bytes). +Transcript written on packedindex.log. +mv packedindex.aux packedindex-pdf.aux +test -e genomediff-pdf.aux && mv genomediff-pdf.aux genomediff.aux -[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map -[2bibtex matstat -mv repfind.aux repfind-pdf.aux -]test -e mgth-pdf.aux && mv mgth-pdf.aux mgth.aux +Output written on matstat.pdf (2 pages, 100174 bytes). +Transcript written on matstat.log. +make[3]: [Makefile:39: genomediff-pdf.aux] Error 1 (ignored) +pdflatex genomediff.tex && rm genomediff.pdf +test -e readjoiner-pdf.aux && mv readjoiner-pdf.aux readjoiner.aux +bibtex readjoiner +mv matstat.aux matstat-pdf.aux +test -e hop-pdf.aux && mv hop-pdf.aux hop.aux +faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... +bibtex hop +This is BibTeX, Version 0.99d (TeX Live 2025/dev/Debian) +The top-level auxiliary file: readjoiner.aux +I found no \bibdata command---while reading file readjoiner.aux +I found no \bibstyle command---while reading file readjoiner.aux +(There were 2 error messages) +make[3]: [Makefile:33: readjoiner-pdf.bbl] Error 2 (ignored) +test -e readjoiner-pdf.bbl || touch readjoiner-pdf.bbl +diff readjoiner-pdf.bbl readjoiner.bbl || mv readjoiner.bbl readjoiner-pdf.bbl && rm -f readjoiner.bbl +}{/usr/share/texlive/texmf- +dist/fonts/enc/dvips/base/8r.enc}] +[2] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) +Overfull \hbox (72.74506pt too wide) in paragraph at lines 126--129 +[]\OT1/ptm/m/n/12 Suppose the in-put se-quence $\OML/cmm/m/it/12 S \OT1/cmr/m/n +/12 = \OML/cmm/m/it/12 gagctcgagcgctgct$ \OT1/ptm/m/n/12 is con-tained in the f +ile \OT1/pcr/m/n/12 Repfind-example.fna\OT1/ptm/m/n/12 . -Overfull \hbox (5.0115pt too wide) in paragraph at lines 252--257 -\OT1/ptm/m/n/12 The \OT1/pcr/b/n/12 mkctxmap \OT1/ptm/m/n/12 sub-tool fa-cil-i- -tates late build-ing of a re-verse lookup ta-ble, it can use the \OT1/pcr/m/sl/ -12 prefix.suf +Overfull \hbox (91.74632pt too wide) in paragraph at lines 130--130 +[]\OT1/pcr/m/n/10 gt suffixerator -db repfinf-sample.seq -indexname repidx -dna + -suf -tis -lcp -ssp -pl -LaTeX Warning: Reference `sec:packedindex:mkindex' on page 3 undefined on input - line 278. +[3mv readjoiner.aux readjoiner-pdf.aux +]test -e ltrharvest-pdf.aux && mv ltrharvest-pdf.aux ltrharvest.aux +bibtex ltrharvest -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/omsptm.fd)bibtex mgth +Overfull \hbox (5.17455pt too wide) in paragraph at lines 163--166 +[]\OT1/ptm/m/n/12 Kurtz, S., Choud-huri, J. V., Ohle-busch, E., Schleier-ma-che +r, C., Stoye, J., Giegerich, -[3] +LaTeX Warning: Reference `forwardEQ' on page 4 undefined on input line 196. -LaTeX Warning: Reference `sec:packedindex:examples' on page 4 undefined on inpu -t line 310. +LaTeX Warning: Reference `reversedEQ' on page 4 undefined on input line 196. -[4] -LaTeX Warning: Citation `gttestdata' on page 5 undefined on input line 432. +LaTeX Warning: Reference `forwardEQ' on page 4 undefined on input line 200. -Overfull \hbox (37.00337pt too wide) in paragraph at lines 441--445 -[]\OT1/ptm/m/n/12 First com-pute the \OT1/ptm/m/it/12 packedin-dex \OT1/ptm/m/n -/12 in-dex file (this as-sumes \OT1/pcr/m/sl/12 chr01.19960731.fsa.gz \OT1/ptm/ -m/n/12 has been copied/linked +LaTeX Warning: Reference `reversedEQ' on page 4 undefined on input line 200. -[5] -No file packedindex.bbl. -[6] (./packedindex.aux) +[4] (./repfind.aux) LaTeX Warning: There were undefined references. @@ -9206,88 +9169,179 @@ ) (see the transcript file for additional information) +Output written on repfind.pdf (4 pages, 111595 bytes). +Transcript written on repfind.log. +mv repfind.aux repfind-pdf.aux +test -e ltrdigest-pdf.aux && mv ltrdigest-pdf.aux ltrdigest.aux +bibtex ltrdigest +This is BibTeX, Version 0.99d (TeX Live 2025/dev/Debian) +The top-level auxiliary file: ltrharvest.aux +I found no \bibdata command---while reading file ltrharvest.aux +I found no \bibstyle command---while reading file ltrharvest.aux +(There were 2 error messages) +make[3]: [Makefile:33: ltrharvest-pdf.bbl] Error 2 (ignored) +test -e ltrharvest-pdf.bbl || touch ltrharvest-pdf.bbl +diff ltrharvest-pdf.bbl ltrharvest.bbl || mv ltrharvest.bbl ltrharvest-pdf.bbl && rm -f ltrharvest.bbl +mv ltrharvest.aux ltrharvest-pdf.aux +test -e uniquesub-pdf.aux && mv uniquesub-pdf.aux uniquesub.aux +bibtex uniquesub +This is BibTeX, Version 0.99d (TeX Live 2025/dev/Debian) +The top-level auxiliary file: hop.aux +I found no \bibdata command---while reading file hop.aux +I found no \bibstyle command---while reading file hop.aux +(There were 2 error messages) +make[3]: [Makefile:32: hop-pdf.bbl] Error 2 (ignored) +test -e hop-pdf.bbl || touch hop-pdf.bbl +diff hop-pdf.bbl hop.bbl || mv hop.bbl hop-pdf.bbl && rm -f hop.bbl +mv hop.aux hop-pdf.aux +test -e matstat-pdf.aux && mv matstat-pdf.aux matstat.aux +bibtex matstat +This is BibTeX, Version 0.99d (TeX Live 2025/dev/Debian) +The top-level auxiliary file: ltrdigest.aux +The style file: unsrt.bst +I found no \bibdata command---while reading file ltrdigest.aux +Warning--I didn't find a database entry for "EKW07" +Warning--I didn't find a database entry for "gff3" +Warning--I didn't find a database entry for "genometools" +Warning--I didn't find a database entry for "hmmer" +Warning--I didn't find a database entry for "pfam" +(There was 1 error message) +make[3]: [Makefile:32: ltrdigest-pdf.bbl] Error 2 (ignored) +test -e ltrdigest-pdf.bbl || touch ltrdigest-pdf.bbl +This is BibTeX, Version 0.99d (TeX Live 2025/dev/Debian) The top-level auxiliary file: uniquesub.aux I found no \bibdata command---while reading file uniquesub.aux I found no \bibstyle command---while reading file uniquesub.aux (There were 2 error messages) ->make[3]: [Makefile:33: uniquesub-pdf.bbl] Error 2 (ignored) +diff ltrdigest-pdf.bbl ltrdigest.bbl || mv ltrdigest.bbl ltrdigest-pdf.bbl && rm -f ltrdigest.bbl +0a1,3 +> \begin{thebibliography}{} +> +> \end{thebibliography} +make[3]: [Makefile:35: uniquesub-pdf.bbl] Error 2 (ignored) test -e uniquesub-pdf.bbl || touch uniquesub-pdf.bbl -diff uniquesub-pdf.bbl uniquesub.bbl || mv uniquesub.bbl uniquesub-pdf.bbl && rm -f uniquesub.bbl -test -e repfind-pdf.aux && mv repfind-pdf.aux repfind.aux -This is BibTeX, Version 0.99d (TeX Live 2025/dev/Debian) +diff uniquesub-pdf.bbl uniquesub.bbl || mv uniquesub.bbl uniquesub-pdf.bbl && rm -f uniquesub.bbl +mv ltrdigest.aux ltrdigest-pdf.aux +entering extended mode +(./genomediff.tex +LaTeX2e <2024-06-01> patch level 2 +L3 programming layer <2024-08-16> +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls +Document Class: article 2024/02/08 v1.4n Standard LaTeX document class +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo))test -e mgth-pdf.aux && mv mgth-pdf.aux mgth.aux + +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)bibtex mgth + +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))mv uniquesub.aux uniquesub-pdf.aux +test -e packedindex-pdf.aux && mv packedindex-pdf.aux packedindex.aux +) +(/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.stybibtex packedindex +) +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstpatch.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) +(./optionman.sty) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) +(/usr/share/texlive/texmf-dist/tex/latex/booktabs/booktabs.sty) +(/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty +(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) +(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.defThis is BibTeX, Version 0.99d (TeX Live 2025/dev/Debian) +The top-level auxiliary file: packedindex.aux +The style file: unsrt.bst +Database file #1: gtmanuals.bib +)test -e packedindex-pdf.bbl || touch packedindex-pdf.bbl + +(/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx)This is BibTeX, Version 0.99d (TeX Live 2025/dev/Debian) +The top-level auxiliary file: mgth.aux +I found no \bibdata command---while reading file mgth.aux +I found no \bibstyle command---while reading file mgth.aux +(There were 2 error messages) +)make[3]: [Makefile:34: mgth-pdf.bbl] Error 2 (ignored) +test -e mgth-pdf.bbl || touch mgth-pdf.bbl + +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.stydiff packedindex-pdf.bbl packedindex.bbl || mv packedindex.bbl packedindex-pdf.bbl && rm -f packedindex.bbl +This is BibTeX, Version 0.99d (TeX Live 2025/dev/Debian) The top-level auxiliary file: matstat.aux I found no \citation commands---while reading file matstat.aux I found no \bibdata command---while reading file matstat.aux I found no \bibstyle command---while reading file matstat.aux (There were 3 error messages) -make[3]: [Makefile:33: matstat-pdf.bbl] Error 2 (ignored) +diff mgth-pdf.bbl mgth.bbl || mv mgth.bbl mgth-pdf.bbl && rm -f mgth.bbl +make[3]: [Makefile:35: matstat-pdf.bbl] Error 2 (ignored) test -e matstat-pdf.bbl || touch matstat-pdf.bbl diff matstat-pdf.bbl matstat.bbl || mv matstat.bbl matstat-pdf.bbl && rm -f matstat.bbl -This is BibTeX, Version 0.99d (TeX Live 2025/dev/Debian) -The top-level auxiliary file: mgth.aux -I found no \bibdata command---while reading file mgth.aux -I found no \bibstyle command---while reading file mgth.aux -(There were 2 error messages) -make[3]: [Makefile:35: mgth-pdf.bbl] Error 2 (ignored) -test -e mgth-pdf.bbl || touch mgth-pdf.bbl +0a1,21 +> \begin{thebibliography}{1} +> +> \bibitem{oai:CiteSeerPSU:481302} +> Paolo Ferragina and Giovanni Manzini. +> \newblock Opportunistic data structures with applications, September~03 2000. +> +> \bibitem{journals/talg/FerraginaMMN07} +> Paolo Ferragina, Giovanni Manzini, Veli M{\"a}kinen, and Gonzalo Navarro. +> \newblock Compressed representations of sequences and full-text indexes. +> \newblock {\em ACM Transactions on Algorithms}, 3(2), 2007. +> +> \bibitem{genometools} +> Gordon Gremme. +> \newblock The \textsc{GenomeTools} genome analysis system. +> \newblock \url{http://genometools.org}. +> +> \bibitem{gttestdata} +> \textsc{GenomeTools} test data set. +> \newblock \url{git://genometools.org/gttestdata.git}. +> +> \end{thebibliography} +mv mgth.aux mgth-pdf.aux +) +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.stytest -e repfind-pdf.aux && mv repfind-pdf.aux repfind.aux +) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)mv packedindex.aux packedindex-pdf.aux -Output written on packedindex.pdf (7 pages, 169097 bytes). -Transcript written on packedindex.log. -mv matstat.aux matstat-pdf.aux -diff mgth-pdf.bbl mgth.bbl || mv mgth.bbl mgth-pdf.bbl && rm -f mgth.bbl +No file genomediff.aux. +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkiimv matstat.aux matstat-pdf.aux + +[Loading MPS to PDF converter (version 2006.09.02).] +)bibtex repfind ./findemptyoutfiles.sh -mv packedindex.aux packedindex-pdf.aux -mv mgth.aux mgth-pdf.aux -test -e readjoiner-pdf.aux && mv readjoiner-pdf.aux readjoiner.aux -test -e hop-pdf.aux && mv hop-pdf.aux hop.aux -test -e hop-pdf.bbl && mv hop-pdf.bbl hop.bbl + +[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.maptest -e readjoiner-pdf.aux && mv readjoiner-pdf.aux readjoiner.aux test -e readjoiner-pdf.bbl && mv readjoiner-pdf.bbl readjoiner.bbl -pdflatex hop.tex pdflatex readjoiner.tex faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -./execcommand.pl tallymer.tex > tallymer-tmp.tex This is BibTeX, Version 0.99d (TeX Live 2025/dev/Debian) The top-level auxiliary file: repfind.aux I found no \citation commands---while reading file repfind.aux I found no \bibdata command---while reading file repfind.aux I found no \bibstyle command---while reading file repfind.aux (There were 3 error messages) -# file output/gt-suffixerator--dna--pl--tis--suf--lcp--v--parts-4--db-read1.fna-read2.fna--indexname-reads.out already exists -# file output/gt-tallymer-occratio--output-unique-nonunique--minmersize-10--maxmersize-20--esa-reads.out already exists -# file output/gt-tallymer-occratio--output-unique-relative--minmersize-10--maxmersize-20--esa-reads.out already exists -# file output/gt-tallymer-occratio--output-unique-nonunique--mersizes-10-13-17--esa-reads.out already exists -# file output/gt-tallymer-mkindex--mersize-19--minocc-40--esa-reads.out already exists -# file output/gt-tallymer-mkindex--mersize-19--minocc-4--indexname-tyr-reads--counts--pl--esa-reads.out already exists -# file output/gt-tallymer-search--output-qseqnum-qpos-counts-sequence--tyr-tyr-reads--q-U89959.fna.out already exists make[3]: [Makefile:32: repfind-pdf.bbl] Error 2 (ignored) test -e repfind-pdf.bbl || touch repfind-pdf.bbl -test -e ltrharvest-pdf.aux && mv ltrharvest-pdf.aux ltrharvest.aux diff repfind-pdf.bbl repfind.bbl || mv repfind.bbl repfind-pdf.bbl && rm -f repfind.bbl -test -e ltrharvest-pdf.bbl && mv ltrharvest-pdf.bbl ltrharvest.bbl mv repfind.aux repfind-pdf.aux -pdflatex ltrharvest.tex -test -e ltrdigest-pdf.aux && mv ltrdigest-pdf.aux ltrdigest.aux -test -e ltrdigest-pdf.bbl && mv ltrdigest-pdf.bbl ltrdigest.bbl -pdflatex ltrdigest.tex -faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... +test -e hop-pdf.aux && mv hop-pdf.aux hop.aux +test -e hop-pdf.bbl && mv hop-pdf.bbl hop.bbl +pdflatex hop.tex faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -}] +This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. +}]./execcommand.pl tallymer.tex > tallymer-tmp.tex + LaTeX Warning: Citation `HAU:DOM:WIE:2008' on page 1 undefined on input line 90 . @@ -9303,160 +9357,117 @@ LaTeX Warning: Citation `genometools' on page 1 undefined on input line 98. -(/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd)This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. - +(/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) [1] LaTeX Warning: Reference `tab:gdopts' on page 2 undefined on input line 165. -(/usr/share/texlive/texmf-dist/tex/latex/base/omscmr.fd)This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. +(/usr/share/texlive/texmf-dist/tex/latex/base/omscmr.fd# file output/gt-suffixerator--dna--pl--tis--suf--lcp--v--parts-4--db-read1.fna-read2.fna--indexname-reads.out already exists +# file output/gt-tallymer-occratio--output-unique-nonunique--minmersize-10--maxmersize-20--esa-reads.out already exists +# file output/gt-tallymer-occratio--output-unique-relative--minmersize-10--maxmersize-20--esa-reads.out already exists +# file output/gt-tallymer-occratio--output-unique-nonunique--mersizes-10-13-17--esa-reads.out already exists +# file output/gt-tallymer-mkindex--mersize-19--minocc-40--esa-reads.out already exists +# file output/gt-tallymer-mkindex--mersize-19--minocc-4--indexname-tyr-reads--counts--pl--esa-reads.out already exists +# file output/gt-tallymer-search--output-qseqnum-qpos-counts-sequence--tyr-tyr-reads--q-U89959.fna.out already exists +)test -e ltrharvest-pdf.aux && mv ltrharvest-pdf.aux ltrharvest.aux -[2] +[2test -e ltrharvest-pdf.bbl && mv ltrharvest-pdf.bbl ltrharvest.bbl +] LaTeX Warning: Reference `code:lua' on page 3 undefined on input line 241. -[3]This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. - -[4]This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) +[3]pdflatex ltrharvest.tex +This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. +[4] Overfull \hbox (35.00766pt too wide) in paragraph at lines 324--325 [][][][][][][][][][][][][][][][][][][][][][][][] No file genomediff.bbl. [5] (./genomediff.aux) kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 tctt1200 +faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... entering extended mode -(./hop.tex +(./readjoiner.tex LaTeX2e <2024-06-01> patch level 2 L3 programming layer <2024-08-16> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2024/02/08 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)entering extended mode -(./readjoiner.tex +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. +) +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.stytest -e ltrdigest-pdf.aux && mv ltrdigest-pdf.aux ltrdigest.aux +test -e ltrdigest-pdf.bbl && mv ltrdigest-pdf.bbl ltrdigest.bbl +pdflatex ltrdigest.tex + +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstpatch.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (./optionman.sty)faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... + +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)entering extended mode +(./hop.tex +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def LaTeX2e <2024-06-01> patch level 2 L3 programming layer <2024-08-16> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) Document Class: article 2024/02/08 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo) +(./readjoiner.aux))) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))entering extended mode -(./ltrharvest.tex -LaTeX2e <2024-06-01> patch level 2 -L3 programming layer <2024-08-16> -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls) -Document Class: article 2024/02/08 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo) -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)entering extended mode -(./ltrdigest.tex) -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) +[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map) +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.styThis is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. + +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstpatch.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)entering extended mode +(./ltrharvest.tex) LaTeX2e <2024-06-01> patch level 2 L3 programming layer <2024-08-16> -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls) +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2024/02/08 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty))) (./optionman.sty) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty)) -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty) -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty) -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty))) -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty) -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty) -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty)) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstpatch.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg))) -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) +(./hop.aux)) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstpatch.sty)) (./optionman.sty -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) -(/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty))) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)) (./optionman.sty +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)} +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty){/usr/share/texlive/texmf- +dist/fonts/enc/dvips/base/8r.enc}] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty -(./hop.aux) -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstpatch.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)) -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstpatch.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg) -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd)) -(./readjoiner.aux) -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) -[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map) (./optionman.sty -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg))) -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (./optionman.sty) -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) -[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) -(./ltrharvest.aux) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) -(./ltrdigest.aux) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) -Underfull \hbox (badness 10000) in paragraph at lines 47--47 -[]$\OT1/pcr/m/n/14.4 http : / / nar . oxfordjournals . org / cgi / content / - -[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}{/usr/share/texlive/texmf- -dist/fonts/enc/dvips/base/8r.enc}] -[1]}{/usr/share/texlive/texmf- -dist/fonts/enc/dvips/base/8r.enc}] -Overfull \hbox (37.48308pt too wide) in paragraph at lines 132--140 -[]\OT1/ptm/m/n/12 It is usu-ally quite easy to pre-pare the map-ping as re-quir -ed. Say the reads to be cor-rected are \OT1/pcr/m/n/12 f[]reads.fastq - -Overfull \hbox (32.30313pt too wide) in paragraph at lines 146--146 -[]\OT1/pcr/m/n/10 > bwa sampe cognate.fas -f map.sam f_reads.sai r_reads.sai f_ -reads.fastq r_reads.fastq[] - -[2] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) -Overfull \hbox (14.55139pt too wide) in paragraph at lines 208--213 -\OT1/ptm/m/n/12 The pre-fix added by HOP (in this case \OT1/pcr/m/n/12 hop\OT1/ -ptm/m/n/12 , which is the de-fault) can be changed us-ing the \OT1/pcr/m/n/12 - -outprefix - -[3 +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstpatch.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty Overfull \hbox (6.12744pt too wide) in paragraph at lines 65--75 [] @@ -9464,82 +9475,63 @@ []\OT1/ptm/m/n/12 The \OT1/ptm/m/it/12 Read-joiner \OT1/ptm/m/n/12 tools are ru n us-ing the fol-low-ing syn-tax: \OT1/pcr/m/n/12 gt readjoiner \OT1/ptm/m/n/12 , -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)] -[1 -[4] (./hop.aux)] ) -(see the transcript file for additional information) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (./optionman.sty) +[1] +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) Underfull \hbox (badness 4132) in paragraph at lines 185--188 []\OT1/ptm/m/n/12 a single-end li-brary plus an in-ter-leaved -[2]] +[2] +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def +[3) +(./ltrharvest.aux)] [4] -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) -[5]}{/usr/share/texlive/texmf- -dist/fonts/enc/dvips/base/8r.enc}] -Output written on hop.pdf (5 pages, 69785 bytes). -Transcript written on hop.log. - +[5] [6 -Overfull \hbox (12.44974pt too wide) in paragraph at lines 52--56 -\OT1/ptm/m/n/12 se-quence fea-tures of LTR retro-trans-posons in pre-dicted can --di-dates, like those re-ported by\OT1/ptm/m/it/12 LTRharvest \OT1/ptm/m/n/12 [ -[]]. -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)] -[7] (./readjoiner.aux) ) +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd)] +[1 +[7{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map] (./readjoiner.aux) ) (see the transcript file for additional information)pdflatex hop.tex - - -LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 120. - - -LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 127. - - -LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 134. - +e1/public/amsfonts/cm/cmsy10.pfb>entering extended mode +(./ltrdigest.tex +LaTeX2e <2024-06-01> patch level 2 +L3 programming layer <2024-08-16> +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls +Document Class: article 2024/02/08 v1.4n Standard LaTeX document class +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo) +Output written on readjoiner.pdf (8 pages, 115395 bytes). +Transcript written on readjoiner.log. +)pdflatex readjoiner.tex -[2 -[4]] +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... +) +(/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty}{/usr/share/texlive/texmf- +dist/fonts/enc/dvips/base/8r.enc}]) +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)) +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty +[1) +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty)] +[2] +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty [3] -[4]test -e uniquesub-pdf.aux && mv uniquesub-pdf.aux uniquesub.aux - -[5]test -e uniquesub-pdf.bbl && mv uniquesub-pdf.bbl uniquesub.bbl - +[4] +[5] [6] -Overfull \hbox (18.22491pt too wide) in paragraph at lines 283--291 -\OT1/ptm/m/n/12 trans-po-son it-self (\OT1/pcr/m/n/12 LTR[]retrotransposon \OT1 -/ptm/m/n/12 type) and the pre-dicted LTRs (\OT1/pcr/m/n/12 long[]terminal[]repe -at - -Underfull \hbox (badness 10000) in paragraph at lines 283--291 - - -[5 -Output written on readjoiner.pdf (8 pages, 115395 bytes). -Transcript written on readjoiner.log. -pdflatex uniquesub.tex -] Overfull \hbox (38.30313pt too wide) in paragraph at lines 545--545 []\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) s(rLTR) e(rLTR ) l(rLTR) sim(LTRs) seq-nr[] @@ -9548,8 +9540,7 @@ []\OT1/pcr/m/n/10 # args=-index chr02.19970727.fsa -v -out pred-chr02.fsa -outi nner pred-inner-chr02.fsa[] -[7]pdflatex readjoiner.tex - +[7] Overfull \hbox (38.30313pt too wide) in paragraph at lines 605--605 []\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) s(rLTR) e(rLTR ) l(rLTR) sim(LTRs) seq-nr[] @@ -9562,8 +9553,9 @@ []\OT1/pcr/m/n/10 $ gt ltrharvest -index chr02.19970727.fsa -seed 30 -xdrop 5 - mat 2 -mis -2 -ins -3 -[8] -[6] +[8} +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstpatch.sty)] +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty Overfull \hbox (266.30313pt too wide) in paragraph at lines 666--666 []\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) TSD l(TSD) m(l LTR) s(rLTR) e(rLTR) l(rLTR) TSD l(TSD) m(rLTR) sim(LTRs) seq-nr[] @@ -9572,11 +9564,9 @@ []\OT1/pcr/m/n/10 $ gt ltrharvest -index chrAll.19971001.fsa -seed 100 -minlenl tr 100 -maxlenltr 1000 -[9] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omspcr.fdfaketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -)faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... - +[9]){/usr/share/texlive/texmf- +dist/fonts/enc/dvips/base/8r.enc}] [10] -[7] Underfull \hbox (badness 10000) in paragraph at lines 824--826 []\OT1/ptm/m/sc/12 GFF3\OT1/ptm/m/n/12 , tab de-lim-ited file for-mat for genom e an-no-ta-tion. $\OT1/pcr/m/n/12 http : / / www . @@ -9584,15 +9574,119 @@ Overfull \hbox (12.44014pt too wide) in paragraph at lines 861--872 [][] -[11] -[12] (./ltrharvest.aux) ) +[11 +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg]) +[12]) (./ltrharvest.aux) ) (see the transcript file for additional information)] +[1]< +Overfull \hbox (37.48308pt too wide) in paragraph at lines 132--140 +[]\OT1/ptm/m/n/12 It is usu-ally quite easy to pre-pare the map-ping as re-quir +ed. Say the reads to be cor-rected are \OT1/pcr/m/n/12 f[]reads.fastq + +Overfull \hbox (32.30313pt too wide) in paragraph at lines 146--146 +[]\OT1/pcr/m/n/10 > bwa sampe cognate.fas -f map.sam f_reads.sai r_reads.sai f_ +reads.fastq r_reads.fastq[] + +[2/usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb]> + (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) +Overfull \hbox (14.55139pt too wide) in paragraph at lines 208--213 +\OT1/ptm/m/n/12 The pre-fix added by HOP (in this case \OT1/pcr/m/n/12 hop\OT1/ +ptm/m/n/12 , which is the de-fault) can be changed us-ing the \OT1/pcr/m/n/12 - +outprefix + +[3] +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd +[4) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def] (./hop.aux) ) +(see the transcript file for additional information))pdflatex ltrharvest.tex + +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) +Underfull \hbox (badness 10000) in paragraph at lines 47--47 +[]$\OT1/pcr/m/n/14.4 http : / / nar . oxfordjournals . org / cgi / content / + +[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.mapThis is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. + +Output written on hop.pdf (5 pages, 69785 bytes). +Transcript written on hop.log. +pdflatex hop.tex +faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... +faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... +entering extended mode +(./readjoiner.tex +LaTeX2e <2024-06-01> patch level 2 +L3 programming layer <2024-08-16> +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls +Document Class: article 2024/02/08 v1.4n Standard LaTeX document class +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo))}{/usr/share/texlive/texmf- +dist/fonts/enc/dvips/base/8r.enc} +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty] +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) +Overfull \hbox (12.44974pt too wide) in paragraph at lines 52--56 +\OT1/ptm/m/n/12 se-quence fea-tures of LTR retro-trans-posons in pre-dicted can +-di-dates, like those re-ported by\OT1/ptm/m/it/12 LTRharvest \OT1/ptm/m/n/12 [ +[]]. +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) + +LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 106. + + +[1]This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. + + +LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 120. + + +LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 127. + + +LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 134. + + +[2] +[3] +[4]) +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) +Overfull \hbox (18.22491pt too wide) in paragraph at lines 283--291 +\OT1/ptm/m/n/12 trans-po-son it-self (\OT1/pcr/m/n/12 LTR[]retrotransposon \OT1 +/ptm/m/n/12 type) and the pre-dicted LTRs (\OT1/pcr/m/n/12 long[]terminal[]repe +at + +Underfull \hbox (badness 10000) in paragraph at lines 283--291 + + +[5] +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) +[6] +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omspcr.fd) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty +[7] +[8] Overfull \hbox (34.70291pt too wide) in paragraph at lines 564--565 []\OT1/pcr/m/n/12 gt suffixerator -tis -des -dna -ssp -db genome.fas -indexname genome.fas @@ -9606,47 +9700,39 @@ \OT1/pcr/m/n/12 -hmms HMM*.hmm -outfileprefix mygenome-ltrs ltrs[]sorted.gff3 g enome.fas -[9>] -> +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)<)/usr/share/texlive/texmf-dist/fo +nts/type1/public/amsfonts/cm/cmmi10.pfb> +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)< (./optionman.sty/usr/share/texlive/texmf-dist/fonts/type1/public/am +sfonts/cm/cmmi7.pfb)> +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def< +s/utmbi8a.pfb) +(./readjoiner.aux>)< /usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmri8a.pfb>This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. -faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) +[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map Output written on ltrdigest.pdf (11 pages, 197795 bytes). Transcript written on ltrdigest.log. pdflatex ltrdigest.tex -faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. entering extended mode (./hop.tex LaTeX2e <2024-06-01> patch level 2 @@ -9654,140 +9740,92 @@ (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2024/02/08 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.styfaketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))entering extended mode -(./readjoiner.tex -LaTeX2e <2024-06-01> patch level 2 -L3 programming layer <2024-08-16> -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls -Document Class: article 2024/02/08 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo))) -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)entering extended mode -(./uniquesub.tex (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) -LaTeX2e <2024-06-01> patch level 2 -L3 programming layer <2024-08-16> -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty -Document Class: article 2024/02/08 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstpatch.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty))) -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (./optionman.sty)) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstpatch.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty) -(./hop.aux)entering extended mode -(./ltrharvest.tex) -LaTeX2e <2024-06-01> patch level 2 -L3 programming layer <2024-08-16> -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg) -Document Class: article 2024/02/08 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)) (./optionman.sty -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty (/usr/share/texlive/texmf-dist/tex/latex/listings/lstpatch.sty) -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd (/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) -[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (./optionman.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def -(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)) -(./readjoiner.aux) (./optionman.sty)entering extended mode -(./ltrdigest.tex) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) +(./hop.aux)entering extended mode +(./ltrharvest.tex LaTeX2e <2024-06-01> patch level 2 L3 programming layer <2024-08-16> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) *geometry* driver: auto-detecting *geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd)This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. + Document Class: article 2024/02/08 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo -[1){/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty)) -(./uniquesub.aux) +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo) +[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map)}{/usr/share/texlive/texmf- +dist/fonts/enc/dvips/base/8r.enc} (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty]) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstpatch.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty +Overfull \hbox (6.12744pt too wide) in paragraph at lines 65--75 +[] + +Overfull \hbox (19.25665pt too wide) in paragraph at lines 80--83 +[]\OT1/ptm/m/n/12 The \OT1/ptm/m/it/12 Read-joiner \OT1/ptm/m/n/12 tools are ru +n us-ing the fol-low-ing syn-tax: \OT1/pcr/m/n/12 gt readjoiner \OT1/ptm/m/n/12 , (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) -[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)) (./optionman.sty) -(/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty) -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty) -(./ltrharvest.aux) +[1] +Underfull \hbox (badness 4132) in paragraph at lines 185--188 +[]\OT1/ptm/m/n/12 a single-end li-brary plus an in-ter-leaved + +[2] +[3] +[4] +[5)] +[6] +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty +[7]) (./readjoiner.aux) ) +(see the transcript file for additional information) +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/listings/lstpatch.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) -[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (./optionman.sty) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) +Output written on readjoiner.pdf (8 pages, 115395 bytes). +Transcript written on readjoiner.log. + +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg))mv readjoiner.aux readjoiner-pdf.aux + +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)test -e readjoiner.bbl && mv readjoiner.bbl readjoiner-pdf.bbl + (./optionman.sty)test -e uniquesub-pdf.aux && mv uniquesub-pdf.aux uniquesub.aux +test -e uniquesub-pdf.bbl && mv uniquesub-pdf.bbl uniquesub.bbl + +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fdpdflatex uniquesub.tex +) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) -(./ltrdigest.aux)}{/usr/share/texlive/texmf- +(./ltrharvest.aux)}{/usr/share/texlive/texmf- dist/fonts/enc/dvips/base/8r.enc}] *geometry* driver: auto-detecting *geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) -[1 -Underfull \hbox (badness 10000) in paragraph at lines 47--47 -[]$\OT1/pcr/m/n/14.4 http : / / nar . oxfordjournals . org / cgi / content / - -[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map] +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd +[1) +[1]{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map Overfull \hbox (37.48308pt too wide) in paragraph at lines 132--140 []\OT1/ptm/m/n/12 It is usu-ally quite easy to pre-pare the map-ping as re-quir ed. Say the reads to be cor-rected are \OT1/pcr/m/n/12 f[]reads.fastq @@ -9803,122 +9841,69 @@ outprefix [3] -[4] (./hop.aux) ) +[4]entering extended mode +(./ltrdigest.tex (./hop.aux)faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... + ) (see the transcript file for additional information){/usr/share/texlive/texmf- -dist/fonts/enc/dvips/base/8r.enc} -Overfull \hbox (6.12744pt too wide) in paragraph at lines 65--75 -[] - -Overfull \hbox (19.25665pt too wide) in paragraph at lines 80--83 -[]\OT1/ptm/m/n/12 The \OT1/ptm/m/it/12 Read-joiner \OT1/ptm/m/n/12 tools are ru -n us-ing the fol-low-ing syn-tax: \OT1/pcr/m/n/12 gt readjoiner \OT1/ptm/m/n/12 , -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) -[1] -Underfull \hbox (badness 4132) in paragraph at lines 185--188 -[]\OT1/ptm/m/n/12 a single-end li-brary plus an in-ter-leaved - -[2] +ist/fonts/type1/urw/courier/ucrr8a.pfb +LaTeX2e <2024-06-01> patch level 2 +L3 programming layer <2024-08-16> +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls>< +Document Class: article 2024/02/08 v1.4n Standard LaTeX document class +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo/usr/share/texlive/texmf-dist/fonts/typ +e1/urw/times/utmb8a.pfb)> +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) Output written on hop.pdf (5 pages, 69785 bytes). Transcript written on hop.log. - -[3]mv hop.aux hop-pdf.aux -}{/usr/share/texlive/texmf- -dist/fonts/enc/dvips/base/8r.enc}test -e hop.bbl && mv hop.bbl hop-pdf.bbl - -[4]test -e matstat-pdf.aux && mv matstat-pdf.aux matstat.aux -] -[5test -e matstat-pdf.bbl && mv matstat-pdf.bbl matstat.bbl -]pdflatex matstat.tex - -Overfull \hbox (8.18253pt too wide) in paragraph at lines 129--133 -\OT1/ptm/m/n/12 loaded from $\OT1/pcr/m/n/12 ftp : / / ftp . ensembl . org / pu -b / current _ fasta / homo _ sapiens _ 47 _ 36i / - -[2 -[6]] -[7] -[3 (./readjoiner.aux)] ) -(see the transcript file for additional information) ) -(see the transcript file for additional information)>>>>>> -Output written on readjoiner.pdf (8 pages, 115395 bytes). -Transcript written on readjoiner.log. -mv readjoiner.aux readjoiner-pdf.aux - -Output written on uniquesub.pdf (3 pages, 105243 bytes). -Transcript written on uniquesub.log. -test -e readjoiner.bbl && mv readjoiner.bbl readjoiner-pdf.bbl -test -e mgth-pdf.aux && mv mgth-pdf.aux mgth.aux -pdflatex uniquesub.tex -test -e mgth-pdf.bbl && mv mgth-pdf.bbl mgth.bbl -pdflatex mgth.tex -faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -}{/usr/share/texlive/texmf- -dist/fonts/enc/dvips/base/8r.enc}]This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) +mv hop.aux hop-pdf.aux +) +(/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.stytest -e hop.bbl && mv hop.bbl hop-pdf.bbl +) +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.styThis is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)}{/usr/share/texlive/texmf- -dist/fonts/enc/dvips/base/8r.enc}] -Overfull \hbox (12.44974pt too wide) in paragraph at lines 52--56 -\OT1/ptm/m/n/12 se-quence fea-tures of LTR retro-trans-posons in pre-dicted can --di-dates, like those re-ported by\OT1/ptm/m/it/12 LTRharvest \OT1/ptm/m/n/12 [ -[]]. -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd -[1)] -[2] - -LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 106. +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstpatch.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg))test -e matstat-pdf.aux && mv matstat-pdf.aux matstat.aux +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (./optionman.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.deftest -e matstat-pdf.bbl && mv matstat-pdf.bbl matstat.bbl +pdflatex matstat.tex +) +(./ltrdigest.aux) +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) +Underfull \hbox (badness 10000) in paragraph at lines 47--47 +[]$\OT1/pcr/m/n/14.4 http : / / nar . oxfordjournals . org / cgi / content / +[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}{/usr/share/texlive/texmf- +dist/fonts/enc/dvips/base/8r.enc}] +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fdfaketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... +) [1] +[2] [3] -[4 - -LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 120. - - -LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 127. - - -LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 134. - - -[2]] -[3] +[4entering extended mode +(./uniquesub.tex] [5 -[4]This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. -] -[6 -Overfull \hbox (18.22491pt too wide) in paragraph at lines 283--291 -\OT1/ptm/m/n/12 trans-po-son it-self (\OT1/pcr/m/n/12 LTR[]retrotransposon \OT1 -/ptm/m/n/12 type) and the pre-dicted LTRs (\OT1/pcr/m/n/12 long[]terminal[]repe -at - -Underfull \hbox (badness 10000) in paragraph at lines 283--291 - - -[5]] +LaTeX2e <2024-06-01> patch level 2 +L3 programming layer <2024-08-16> +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls] +Document Class: article 2024/02/08 v1.4n Standard LaTeX document class +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) +[6] +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) Overfull \hbox (38.30313pt too wide) in paragraph at lines 545--545 []\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) s(rLTR) e(rLTR ) l(rLTR) sim(LTRs) seq-nr[] @@ -9927,10 +9912,8 @@ []\OT1/pcr/m/n/10 # args=-index chr02.19970727.fsa -v -out pred-chr02.fsa -outi nner pred-inner-chr02.fsa[] -[7]This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. - -[6 +[7] +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty Overfull \hbox (38.30313pt too wide) in paragraph at lines 605--605 []\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) s(rLTR) e(rLTR ) l(rLTR) sim(LTRs) seq-nr[] @@ -9943,7 +9926,8 @@ []\OT1/pcr/m/n/10 $ gt ltrharvest -index chr02.19970727.fsa -seed 30 -xdrop 5 - mat 2 -mis -2 -ins -3 -[8]] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omspcr.fd) +[8 +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))] Overfull \hbox (266.30313pt too wide) in paragraph at lines 666--666 []\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) TSD l(TSD) m(l LTR) s(rLTR) e(rLTR) l(rLTR) TSD l(TSD) m(rLTR) sim(LTRs) seq-nr[] @@ -9952,11 +9936,8 @@ []\OT1/pcr/m/n/10 $ gt ltrharvest -index chrAll.19971001.fsa -seed 100 -minlenl tr 100 -maxlenltr 1000 -[9]mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input tctt1200 - -[7 -[10]] -[8 +[9] +[10] Underfull \hbox (badness 10000) in paragraph at lines 824--826 []\OT1/ptm/m/sc/12 GFF3\OT1/ptm/m/n/12 , tab de-lim-ited file for-mat for genom e an-no-ta-tion. $\OT1/pcr/m/n/12 http : / / www . @@ -9964,10 +9945,96 @@ Overfull \hbox (12.44014pt too wide) in paragraph at lines 861--872 [][] -[11]] +[11)] [12] (./ltrharvest.aux) ) (see the transcript file for additional information)) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty + +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) +Output written on ltrharvest.pdf (13 pages, 170270 bytes). +Transcript written on ltrharvest.log. + (./optionman.sty)mv ltrharvest.aux ltrharvest-pdf.aux +test -e ltrharvest.bbl && mv ltrharvest.bbl ltrharvest-pdf.bbl +test -e mgth-pdf.aux && mv mgth-pdf.aux mgth.aux + +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)test -e mgth-pdf.bbl && mv mgth-pdf.bbl mgth.bbl + +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)pdflatex mgth.tex + +(./uniquesub.aux)}{/usr/share/texlive/texmf- +dist/fonts/enc/dvips/base/8r.enc}] +Overfull \hbox (12.44974pt too wide) in paragraph at lines 52--56 +\OT1/ptm/m/n/12 se-quence fea-tures of LTR retro-trans-posons in pre-dicted can +-di-dates, like those re-ported by\OT1/ptm/m/it/12 LTRharvest \OT1/ptm/m/n/12 [ +[]]. +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) + +LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 106. + + +[1]faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... + +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) + +LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 120. + + +LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 127. + + +LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 134. + + +[2 +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) +[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map] +[3] +[4entering extended mode +(./matstat.tex] +LaTeX2e <2024-06-01> patch level 2 +L3 programming layer <2024-08-16> +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls +Overfull \hbox (18.22491pt too wide) in paragraph at lines 283--291 +\OT1/ptm/m/n/12 trans-po-son it-self (\OT1/pcr/m/n/12 LTR[]retrotransposon \OT1 +/ptm/m/n/12 type) and the pre-dicted LTRs (\OT1/pcr/m/n/12 long[]terminal[]repe +at + +Underfull \hbox (badness 10000) in paragraph at lines 283--291 + + +[5 +Document Class: article 2024/02/08 v1.4n Standard LaTeX document class +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo])) +[6 +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omspcr.fd) +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty +[7] +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty) +[8)] Overfull \hbox (34.70291pt too wide) in paragraph at lines 564--565 []\OT1/pcr/m/n/12 gt suffixerator -tis -des -dna -ssp -db genome.fas -indexname genome.fas @@ -9981,326 +10048,170 @@ \OT1/pcr/m/n/12 -hmms HMM*.hmm -outfileprefix mygenome-ltrs ltrs[]sorted.gff3 g enome.fas -[9>] (./ltrdigest.aux) ) -(see the transcript file for additional information)>>>> ->>>><>< -/usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmri8a.pfb> -Output written on ltrharvest.pdf (13 pages, 170270 bytes). -Transcript written on ltrharvest.log. -entering extended mode -(./matstat.texmv ltrharvest.aux ltrharvest-pdf.aux -This is METAFONT, Version 2.71828182 (TeX Live 2025/dev/Debian) (preloaded base=mf) - -LaTeX2e <2024-06-01> patch level 2 -L3 programming layer <2024-08-16> -(/usr/share/texlive/texmf-dist/tex/latex/base/article.clstest -e ltrharvest.bbl && mv ltrharvest.bbl ltrharvest-pdf.bbl - -(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tctt1200.mf -(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf -Document Class: article 2024/02/08 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo -Output written on ltrdigest.pdf (11 pages, 197795 bytes). -Transcript written on ltrdigest.log. -)) -(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tctt.mftest -e packedindex-pdf.aux && mv packedindex-pdf.aux packedindex.aux +[9] +[10])This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. -(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymb.mf - Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf - Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txpseudo.mf - Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txaccent.mf) - Ok [0]bibtex packedindex - [1] [2]mv ltrdigest.aux ltrdigest-pdf.aux - [3] [4] -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty [5]test -e ltrdigest.bbl && mv ltrdigest.bbl ltrdigest-pdf.bbl - [6] [7] [8] [9] -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) [10] [11] [12] [27] [29]) -(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txgen.mf - Ok [100] [109]test -e repfind-pdf.aux && mv repfind-pdf.aux repfind.aux - [98] [99] -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty [108]) -(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymbol.mf - Ok [13] [18] [21] [22] [23] [24] [25] [26] [28] [31]test -e repfind-pdf.bbl && mv repfind-pdf.bbl repfind.bbl - [32] -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty) [36] [39] [44]) -[45] [46] [42] [47] [60] [61] [62] [77] [79]pdflatex repfind.tex - [87] [110] [91] [93] [94] [95] -[96] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] -[138] [139] [140] [141] [142] [143]faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... - [144] [145] [146] [147] [148] [149] -[150] [151] [152] [153] [154] [155] [156] [157] [158] [159]) [160] [161] -[162] [163] [164] [165] [166] -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty [167]) [168] [169] [171] [172] [173]entering extended mode -(./uniquesub.tex -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) [174] -[175] [177] [176] [180] [181] [182] [183] [184] [187] -LaTeX2e <2024-06-01> patch level 2 -L3 programming layer <2024-08-16> -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty [191] [214]) [246]) -(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txromod.mf - Ok [48] [49] -Document Class: article 2024/02/08 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo [50] [51]) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty [52)]entering extended mode -(./mgth.tex [53] [54] [55] [56]) [57]) +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty -(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrsuper.mf +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstpatch.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty)}{/usr/share/texlive/texmf- +dist/fonts/enc/dvips/base/8r.enc} +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg))] +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty +Overfull \hbox (8.18253pt too wide) in paragraph at lines 129--133 +\OT1/ptm/m/n/12 loaded from $\OT1/pcr/m/n/12 ftp : / / ftp . ensembl . org / pu +b / current _ fasta / homo _ sapiens _ 47 _ 36i / + +[2)] +(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty +[3]) (./optionman.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) +(./matstat.aux) +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) (./ltrdigest.aux) ) +(see the transcript file for additional information)< (./uniquesub.aux) ) +(see the transcript file for additional information)/usr/share/texlive/texmf-d +ist/fonts/type1/public/amsfonts/cm/cmmi12.pfb> +[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map</usr/share/texlive/texmf-dist/fonts/ty +pe1/public/amsfonts/cm/cmmi12.pfb><></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/te +xlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texl +ive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy8.pfb LaTeX2e <2024-06-01> patch level 2 L3 programming layer <2024-08-16> -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls - Ok [185] [178] [179] +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls>< Document Class: article 2024/02/08 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo [170] [186]) -(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrfract.mf -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty) - Ok [188] [189] -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty [190])) ) ) ) -Font metrics written on tctt1200.tfm. -Output written on tctt1200.600gf (128 characters, 22920 bytes). -Transcript written on tctt1200.log. -) -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo/usr/share/texlive/tex +mf-dist/fonts/type1/urw/courier/ucrr8a.pfb))> (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty) -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)) -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstpatch.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) -(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)This is BibTeX, Version 0.99d (TeX Live 2025/dev/Debian) -The top-level auxiliary file: packedindex.aux -The style file: unsrt.bst -Database file #1: gtmanuals.bib -test -e packedindex-pdf.bbl || touch packedindex-pdf.bbl - (./optionman.sty))diff packedindex-pdf.bbl packedindex.bbl || mv packedindex.bbl packedindex-pdf.bbl && rm -f packedindex.bbl - -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)0a1,21 -> \begin{thebibliography}{1} -> -> \bibitem{oai:CiteSeerPSU:481302} -> Paolo Ferragina and Giovanni Manzini. -> \newblock Opportunistic data structures with applications, September~03 2000. -> -> \bibitem{journals/talg/FerraginaMMN07} -> Paolo Ferragina, Giovanni Manzini, Veli M{\"a}kinen, and Gonzalo Navarro. -> \newblock Compressed representations of sequences and full-text indexes. -> \newblock {\em ACM Transactions on Algorithms}, 3(2), 2007. -> -> \bibitem{genometools} -> Gordon Gremme. -> \newblock The \textsc{GenomeTools} genome analysis system. -> \newblock \url{http://genometools.org}. -> -> \bibitem{gttestdata} -> \textsc{GenomeTools} test data set. -> \newblock \url{git://genometools.org/gttestdata.git}. -> -> \end{thebibliography} -) -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)mv packedindex.aux packedindex-pdf.aux +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)< +/usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmri8a.pfb>) +Output written on uniquesub.pdf (3 pages, 105243 bytes). +Transcript written on uniquesub.log. (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty)pdflatex tallymer-tmp - (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)) -(./matstat.aux)faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.stymktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input tctt1200 +pdflatex uniquesub.tex -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.styThis is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstpatch.sty)faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstpatch.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstpatch.sty)) -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg))) -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty -[1){/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) -(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (./optionman.sty) (./optionman.sty) +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (./optionman.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) -(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) -(./uniquesub.aux)))) +(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) -(/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx)) -(/usr/share/texlive/texmf-dist/tex/latex/graphics/dvipsnam.def) -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd)This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) +(/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltxThis is METAFONT, Version 2.71828182 (TeX Live 2025/dev/Debian) (preloaded base=mf) +)) +(/usr/share/texlive/texmf-dist/tex/latex/graphics/dvipsnam.def +(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tctt1200.mf +(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf)) +(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tctt.mf +(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymb.mf + Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf + Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txpseudo.mf + Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txaccent.mf + Ok [0] +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd [1] [2]) [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def [27] [29]) +(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txgen.mf + Ok [100] [109] [98] [99]} [108]){ +(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymbol.mf + Ok [13]/usr/share/texlive/texmf- +dist/fonts/enc/dvips/base/8r.enc [18]} [21] [22] [23] [24] [25]) [26] [28] [31] +(./mgth.aux) [32] [36] [39] [44] +[45] [46] [42] [47] [60] [61] [62]] [77] [79] [87] [110] [91] [93] [94] [95] +[96] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] +[138] [139] [140] [141]This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) -[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) -(./mgth.aux) *geometry* driver: auto-detecting *geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii +(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [142] [143] [144] [145] [146] [147] [148] [Loading MPS to PDF converter (version 2006.09.02).] -)mktexpk: /build/reproducible-path/genometools-1.6.5+ds/debian/.debhelper/generated/_source/home/.texlive2024/texmf-var/fonts/pk/ljfour/jknappen/ec/tctt1200.600pk: successfully generated. - (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty -(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg) - -LaTeX Warning: There were undefined references. - - -LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. - - ) -(see the transcript file for additional information) ) -kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 tcrm1200 - -[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.mapentering extended mode -(./repfind.tex -LaTeX2e <2024-06-01> patch level 2 -L3 programming layer <2024-08-16> -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls -Document Class: article 2024/02/08 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo}{/usr/share/texlive/texmf- -dist/fonts/enc/dvips/base/8r.enc}))] -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) +) [149] +[150] [151] [152] [153] (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty [154] [155] [156] [157] [158] [159] +(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg) [160] [161] +[162]) [163] [164] Overfull \hbox (8.18253pt too wide) in paragraph at lines 122--126 \OT1/ptm/m/n/12 loaded from $\OT1/pcr/m/n/12 ftp : / / ftp . ensembl . org / pu b / current _ fasta / homo _ sapiens _ 47 _ 36i / -[2] (./matstat.aux) ) -(see the transcript file for additional information)entering extended mode -(./tallymer-tmp.tex -LaTeX2e <2024-06-01> patch level 2 -L3 programming layer <2024-08-16> -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls -Document Class: article 2024/02/08 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))}{/usr/share/texlive/texmf- -dist/fonts/enc/dvips/base/8r.enc} -Output written on matstat.pdf (2 pages, 100174 bytes). -Transcript written on matstat.log. -)]pdflatex matstat.tex - -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) -Overfull \hbox (8.18253pt too wide) in paragraph at lines 129--133 -\OT1/ptm/m/n/12 loaded from $\OT1/pcr/m/n/12 ftp : / / ftp . ensembl . org / pu -b / current _ fasta / homo _ sapiens _ 47 _ 36i / - -[2 -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)])faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... - -[3 -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty)] (./uniquesub.aux -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) ) -(see the transcript file for additional information) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty))}{/usr/share/texlive/texmf- -dist/fonts/enc/dvips/base/8r.enc} -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstpatch.sty)] -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty +[2 [165] [166] [167] [168] [169] [171] [172]] [173] [174] +[175] [177] [176] [180] +[1 [181] [182] [183]{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map [184] [187] [191] [214] [246]) +(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txromod.mf + Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57]) +(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrsuper.mf + Ok [185] [178] [179] [170] [186]) +(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrfract.mf + Ok [188] [189] [190]) ) ) ) +Font metrics written on tctt1200.tfm. +Output written on tctt1200.600gf (128 characters, 22920 bytes). +Transcript written on tctt1200.log. +}{/usr/share/texlive/texmf- +dist/fonts/enc/dvips/base/8r.enc}] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)) -Output written on uniquesub.pdf (3 pages, 105243 bytes). -Transcript written on uniquesub.log. - -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.defmv uniquesub.aux uniquesub-pdf.aux - -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) Overfull \hbox (1.48183pt too wide) in paragraph at lines 97--108 \OT1/ptm/m/it/12 Tools \OT1/ptm/m/n/12 (see [[]] for in-stal-la-tion in-struc-t ions). There are two dif-fer-ent in-stal-la-tion op-tions for the \OT1/ptm/m/it /12 Genome- -[1)test -e uniquesub.bbl && mv uniquesub.bbl uniquesub-pdf.bbl - -(./repfind.aux) (./optionman.sty)]./findemptyoutfiles.sh - -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) +[1] Overfull \hbox (0.98593pt too wide) in paragraph at lines 115--125 []\OT1/pcr/m/n/10.95 BLAST-Filename \OT1/ptm/m/n/12 de-notes the XML for-mat-te d BLAST-hit file, \OT1/pcr/m/n/10.95 Metagenome-Filename \OT1/ptm/m/n/12 the FA STA -[2] -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) -[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def +[2mktexpk: /build/reproducible-path/genometools-1.6.5+ds/debian/.debhelper/generated/_source/home/.texlive2024/texmf-var/fonts/pk/ljfour/jknappen/ec/tctt1200.600pk: successfully generated. +] + +LaTeX Warning: There were undefined references. + + +LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. + + ) +(see the transcript file for additional information) Overfull \hbox (1.2452pt too wide) in paragraph at lines 256--257 []\OT1/ptm/m/n/12 . If this op- -[3)]This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. +[3] +kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 tcrm1200 (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omlptm.fd) [4] Overfull \hbox (13.12135pt too wide) in paragraph at lines 439--439 @@ -10311,14 +10222,6 @@ [] [5] -No file tallymer-tmp.aux. -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex - -LaTeX Warning: Citation `KUR:NER:STE:WAR:2008' on page 1 undefined on input lin -e 105. - -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) Overfull \hbox (13.12135pt too wide) in paragraph at lines 452--452 []\OT1/ptm/m/n/10.95 tataaaatagccaaatctgagcctaaaagcccttggatatccatgatttagaacgaac catcccctcttattcaggagaagttttctgaactcttcaacatcctcga...| @@ -10351,31 +10254,18 @@ Overfull \hbox (1.15051pt too wide) in paragraph at lines 509--509 []\OT1/ptm/m/n/12 - -[6]./execcommand.pl tagerator.tex > tagerator-tmp.tex - -[7] (./mgth.aux) - -LaTeX Warning: Reference `Examples' on page 1 undefined on input line 116. - - -[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map ) +[6] +[7] (./mgth.aux) ) (see the transcript file for additional information)# file output/gt-tagerator--q-Q1.gz--maxocc-10--pck-pck-human.out already exists -test -e packedindex-pdf.bbl && mv packedindex-pdf.bbl packedindex.bbl -pdflatex packedindex.tex - +cm/cmsy7.pfb> Output written on mgth.pdf (8 pages, 140119 bytes). Transcript written on mgth.log. @@ -10383,334 +10273,183 @@ faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. -entering extended mode -(./matstat.tex + (./matstat.auxentering extended mode +(./mgth.texentering extended mode +(./uniquesub.tex) LaTeX2e <2024-06-01> patch level 2 L3 programming layer <2024-08-16> -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls -Document Class: article 2024/02/08 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.styThis is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. - -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)))}{/usr/share/texlive/texmf- -dist/fonts/enc/dvips/base/8r.enc} -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)] -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1phv.fd) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) -Overfull \hbox (49.67761pt too wide) in paragraph at lines 170--170 -[]\OT1/pcr/m/n/12 gt tallymer occratio: error: fopen(): cannot open file 'reads -.prj': - -[2] -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty}{/usr/share/texlive/texmf- -dist/fonts/enc/dvips/base/8r.enc} - -LaTeX Warning: Reference `Examples' on page 3 undefined on input line 194. - - -[3]] -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstpatch.sty) -Overfull \hbox (49.67761pt too wide) in paragraph at lines 257--257 -[]\OT1/pcr/m/n/12 gt tallymer occratio: error: fopen(): cannot open file 'reads -.prj': - -[4 -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty -[2]] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg) -[5)] -Overfull \hbox (72.74506pt too wide) in paragraph at lines 126--129 -[]\OT1/ptm/m/n/12 Suppose the in-put se-quence $\OML/cmm/m/it/12 S \OT1/cmr/m/n -/12 = \OML/cmm/m/it/12 gagctcgagcgctgct$ \OT1/ptm/m/n/12 is con-tained in the f -ile \OT1/pcr/m/n/12 Repfind-example.fna\OT1/ptm/m/n/12 . - -Overfull \hbox (91.74632pt too wide) in paragraph at lines 130--130 -[]\OT1/pcr/m/n/10 gt suffixerator -db repfinf-sample.seq -indexname repidx -dna - -suf -tis -lcp -ssp -pl - -[3 -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)] -(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty -[6)] -Overfull \hbox (5.17455pt too wide) in paragraph at lines 163--166 -[]\OT1/ptm/m/n/12 Kurtz, S., Choud-huri, J. V., Ohle-busch, E., Schleier-ma-che -r, C., Stoye, J., Giegerich, - -[4] (./optionman.sty (./repfind.aux)) ) +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls ) (see the transcript file for additional information) -[8 - -LaTeX Warning: There were undefined references. - - -LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. - - ) -(see the transcript file for additional information)>>entering extended mode -(./packedindex.tex> -LaTeX2e <2024-06-01> patch level 2 -L3 programming layer <2024-08-16> -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls< -/usr/share/texlive/texmf-dist/fonts/type1/urw/courier/ucrr8a.pfb Document Class: article 2024/02/08 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo> -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty -Output written on repfind.pdf (4 pages, 110929 bytes). -Transcript written on repfind.log. - -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) -[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.mappdflatex repfind.tex - -Output written on tallymer-tmp.pdf (9 pages, 149394 bytes). -Transcript written on tallymer-tmp.log. -entering extended mode -(./mgth.texfaketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -pdflatex tallymer-tmp - +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo> patch level 2 L3 programming layer <2024-08-16> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2024/02/08 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)))faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty)> +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.stytest -e ltrdigest.bbl && mv ltrdigest.bbl ltrdigest-pdf.bbl + +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.stytest -e packedindex-pdf.aux && mv packedindex-pdf.aux packedindex.aux +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))test -e packedindex-pdf.bbl && mv packedindex-pdf.bbl packedindex.bbl +)pdflatex packedindex.tex + +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstpatch.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty)) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg) -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) -(/usr/share/texlive/texmf-dist/tex/latex/comment/comment.sty -Excluding comment 'comment') -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (./optionman.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.styThis is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. +Output written on matstat.pdf (2 pages, 100174 bytes). +Transcript written on matstat.log. -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstpatch.sty)This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstpatch.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstpatch.sty)pdflatex matstat.tex -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def (/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) -(./packedindex.aux)) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg))) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (./optionman.sty) -(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) -[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... +faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... + (./optionman.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) +(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (./optionman.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) -(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) +(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)))) +(./uniquesub.aux) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx)) -(/usr/share/texlive/texmf-dist/tex/latex/graphics/dvipsnam.def)}{/usr/share/texlive/texmf- -dist/fonts/enc/dvips/base/8r.enc} -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)] +(/usr/share/texlive/texmf-dist/tex/latex/graphics/dvipsnam.def) +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) +[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) -(./mgth.aux) -Overfull \hbox (8.18253pt too wide) in paragraph at lines 122--126 -\OT1/ptm/m/n/12 loaded from $\OT1/pcr/m/n/12 ftp : / / ftp . ensembl . org / pu -b / current _ fasta / homo _ sapiens _ 47 _ 36i / - -[2] (./matstat.aux) ) -(see the transcript file for additional information) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty) -[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map -Output written on matstat.pdf (2 pages, 100174 bytes). -Transcript written on matstat.log. -mv matstat.aux matstat-pdf.aux -test -e matstat.bbl && mv matstat.bbl matstat-pdf.bbl -pdflatex tagerator-tmp -entering extended mode -(./repfind.tex +) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty +(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) +[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.mapentering extended mode +(./packedindex.tex LaTeX2e <2024-06-01> patch level 2 L3 programming layer <2024-08-16> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2024/02/08 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo))faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... - -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.styentering extended mode -(./tallymer-tmp.tex -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty) -LaTeX2e <2024-06-01> patch level 2 -L3 programming layer <2024-08-16> -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls) -Document Class: article 2024/02/08 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)}){/usr/share/texlive/texmf- +dist/fonts/enc/dvips/base/8r.enc} +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty] (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty) +Overfull \hbox (8.18253pt too wide) in paragraph at lines 129--133 +\OT1/ptm/m/n/12 loaded from $\OT1/pcr/m/n/12 ftp : / / ftp . ensembl . org / pu +b / current _ fasta / homo _ sapiens _ 47 _ 36i / + +[2)] +[3]) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)entering extended mode +(./matstat.tex (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)}{/usr/share/texlive/texmf- -dist/fonts/enc/dvips/base/8r.enc} -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty])) -(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) - -LaTeX Warning: Citation `oai:CiteSeerPSU:481302' on page 1 undefined on input l -ine 51. - - -LaTeX Warning: Citation `journals/talg/FerraginaMMN07' on page 1 undefined on i -nput line 53. - - -LaTeX Warning: Citation `genometools' on page 1 undefined on input line 56. - -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty (./optionman.sty)) -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty)This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. - -[1 -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)] +LaTeX2e <2024-06-01> patch level 2 +L3 programming layer <2024-08-16> +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty +Document Class: article 2024/02/08 v1.4n Standard LaTeX document class +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstpatch.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty))) +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) +(/usr/share/texlive/texmf-dist/tex/latex/comment/comment.sty +Excluding comment 'comment') +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (./optionman.sty +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) (./uniquesub.aux) ) +(see the transcript file for additional information)) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) -(./tallymer-tmp.aux) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd>) +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty}{/usr/share/texlive/texmf- +dist/fonts/enc/dvips/base/8r.enc}] +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstpatch.sty +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) Overfull \hbox (1.48183pt too wide) in paragraph at lines 97--108 \OT1/ptm/m/it/12 Tools \OT1/ptm/m/n/12 (see [[]] for in-stal-la-tion in-struc-t ions). There are two dif-fer-ent in-stal-la-tion op-tions for the \OT1/ptm/m/it /12 Genome- -[1] -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) -Output written on packedindex.pdf (7 pages, 171027 bytes). -Transcript written on packedindex.log. - +[1) +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty]) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty Overfull \hbox (0.98593pt too wide) in paragraph at lines 115--125 []\OT1/pcr/m/n/10.95 BLAST-Filename \OT1/ptm/m/n/12 de-notes the XML for-mat-te d BLAST-hit file, \OT1/pcr/m/n/10.95 Metagenome-Filename \OT1/ptm/m/n/12 the FA STA -[2]pdflatex packedindex.tex - -[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map +[2]) (./optionman.sty) Overfull \hbox (1.2452pt too wide) in paragraph at lines 256--257 []\OT1/ptm/m/n/12 . If this op- -[3]faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... - (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omlptm.fd) +[3] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omlptm.fd) [4] Overfull \hbox (13.12135pt too wide) in paragraph at lines 439--439 []\OT1/ptm/m/n/10.95 tataaaatagccaaatctgagcctaaaagcccttggatatccatgatttagaacgaac @@ -10720,6 +10459,7 @@ [] [5] +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) Overfull \hbox (13.12135pt too wide) in paragraph at lines 452--452 []\OT1/ptm/m/n/10.95 tataaaatagccaaatctgagcctaaaagcccttggatatccatgatttagaacgaac catcccctcttattcaggagaagttttctgaactcttcaacatcctcga...| @@ -10753,187 +10493,73 @@ []\OT1/ptm/m/n/12 - [6] -[7] (./mgth.aux) ) -(see the transcript file for additional information) - patch level 2 -L3 programming layer <2024-08-16> -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls> -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) -Output written on mgth.pdf (8 pages, 140119 bytes). -Transcript written on mgth.log. -mv mgth.aux mgth-pdf.aux -test -e mgth.bbl && mv mgth.bbl mgth-pdf.bbl -This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. -) -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)} -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty{/usr/share/texlive/texmf- -dist/fonts/enc/dvips/base/8r.enc})] -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) -[2 -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty]) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) -(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) -Overfull \hbox (72.74506pt too wide) in paragraph at lines 126--129 -[]\OT1/ptm/m/n/12 Suppose the in-put se-quence $\OML/cmm/m/it/12 S \OT1/cmr/m/n -/12 = \OML/cmm/m/it/12 gagctcgagcgctgct$ \OT1/ptm/m/n/12 is con-tained in the f -ile \OT1/pcr/m/n/12 Repfind-example.fna\OT1/ptm/m/n/12 . +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def +[7]) +(./matstat.aux)}{/usr/share/texlive/texmf- +dist/fonts/enc/dvips/base/8r.enc} +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd)] -Overfull \hbox (91.74632pt too wide) in paragraph at lines 130--130 -[]\OT1/pcr/m/n/10 gt suffixerator -db repfinf-sample.seq -indexname repidx -dna - -suf -tis -lcp -ssp -pl +LaTeX Warning: Citation `oai:CiteSeerPSU:481302' on page 1 undefined on input l +ine 51. -[3] (./optionman.sty) -Overfull \hbox (5.17455pt too wide) in paragraph at lines 163--166 -[]\OT1/ptm/m/n/12 Kurtz, S., Choud-huri, J. V., Ohle-busch, E., Schleier-ma-che -r, C., Stoye, J., Giegerich, -[4] (./repfind.aux) ) -(see the transcript file for additional information) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) -No file tagerator-tmp.aux. -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) +LaTeX Warning: Citation `journals/talg/FerraginaMMN07' on page 1 undefined on i +nput line 53. + + +LaTeX Warning: Citation `genometools' on page 1 undefined on input line 56. + (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map -Output written on repfind.pdf (4 pages, 110929 bytes). -Transcript written on repfind.log. -mv repfind.aux repfind-pdf.aux -test -e repfind.bbl && mv repfind.bbl repfind-pdf.bbl -}{/usr/share/texlive/texmf- -dist/fonts/enc/dvips/base/8r.enc}] -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1phv.fd) -Overfull \hbox (49.67761pt too wide) in paragraph at lines 170--170 -[]\OT1/pcr/m/n/12 gt tallymer occratio: error: fopen(): cannot open file 'reads -.prj': - +[1] [2] +Overfull \hbox (5.0115pt too wide) in paragraph at lines 252--257 +\OT1/ptm/m/n/12 The \OT1/pcr/b/n/12 mkctxmap \OT1/ptm/m/n/12 sub-tool fa-cil-i- +tates late build-ing of a re-verse lookup ta-ble, it can use the \OT1/pcr/m/sl/ +12 prefix.suf +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/omsptm.fd) [3] -Overfull \hbox (49.67761pt too wide) in paragraph at lines 257--257 -[]\OT1/pcr/m/n/12 gt tallymer occratio: error: fopen(): cannot open file 'reads -.prj': - [4] -[5] -[6] -[7] -[8] -[9entering extended mode -(./packedindex.tex] (./tallymer-tmp.aux) ) -(see the transcript file for additional information) -LaTeX2e <2024-06-01> patch level 2 -L3 programming layer <2024-08-16> -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls -Document Class: article 2024/02/08 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo))< -/usr/share/texlive/texmf-dist/fonts/type1/urw/courier/ucrr8a.pfb -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty>)) -Output written on tallymer-tmp.pdf (9 pages, 148773 bytes). -Transcript written on tallymer-tmp.log. -mv tallymer-tmp.pdf tallymer.pdf -) -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstpatch.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty}{/usr/share/texlive/texmf- -dist/fonts/enc/dvips/base/8r.enc})] -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) -[2 -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)]This is METAFONT, Version 2.71828182 (TeX Live 2025/dev/Debian) (preloaded base=mf) -(/usr/share/texlive/texmf-dist/tex/latex/comment/comment.sty -Excluding comment 'comment') +LaTeX Warning: Citation `gttestdata' on page 5 undefined on input line 432. + + +Overfull \hbox (37.00337pt too wide) in paragraph at lines 441--445 +[]\OT1/ptm/m/n/12 First com-pute the \OT1/ptm/m/it/12 packedin-dex \OT1/ptm/m/n +/12 in-dex file (this as-sumes \OT1/pcr/m/sl/12 chr01.19960731.fsa.gz \OT1/ptm/ +m/n/12 has been copied/linked + +[5] (./packedindex.bbl) +[6]mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input tcrm1200 +}{/usr/share/texlive/texmf- +dist/fonts/enc/dvips/base/8r.enc}] +Overfull \hbox (8.18253pt too wide) in paragraph at lines 122--126 +\OT1/ptm/m/n/12 loaded from $\OT1/pcr/m/n/12 ftp : / / ftp . ensembl . org / pu +b / current _ fasta / homo _ sapiens _ 47 _ 36i / + +[2]This is METAFONT, Version 2.71828182 (TeX Live 2025/dev/Debian) (preloaded base=mf) + (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tcrm1200.mf -(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf -[3) (./optionman.sty -(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tcrm.mf]) +(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf) +(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tcrm.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymb.mf Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txpseudo.mf - Ok) -[4 (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txaccent.mf] - Ok [0] [1] [2] [3] [4] -Overfull \hbox (5.90344pt too wide) in paragraph at lines 265--265 -[]\OT1/pcr/m/n/8 # computing prefix matches with up to 1 differences and at mos -t 5 occurrences in the subject sequences[] - -[5] (./tagerator-tmp.aux) [5] [6] [7] ) -(see the transcript file for additional information) [10] [11] [12 + Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txaccent.mf + Ok [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [27] [29]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txgen.mf - Ok [100] [18] [21] [28] [31] [36] [77]) [93] [94] [132] [133] [135] [136] [137] -[138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) [149] -[150] [151] [152] -[1 [153] -Output written on tagerator-tmp.pdf (5 pages, 120794 bytes). -Transcript written on tagerator-tmp.log. -{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map [154] [155] [156] [157] [158] [159]pdflatex tagerator-tmp - [160] [161] + Ok [13] [18] [21] [22] [23] [24] [25] [26] [28] [31] [32] [36] [39] [44] +[45] [46] [42] [47] [60] [61] [62] [77] [79] [87] [110] [91] [93] [94] [95] +[96] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] +[138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] +[150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [171] [172] [173] [174] [175] [177] [176] [180] [181] [182] [183] [184] [187] [191] [214] [246]) -(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txromod.mffaketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... - +(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txromod.mf Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrsuper.mf Ok [185] [178] [179] [170] [186]) @@ -10943,97 +10569,113 @@ Font metrics written on tcrm1200.tfm. Output written on tcrm1200.600gf (128 characters, 28032 bytes). Transcript written on tcrm1200.log. -This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. -}{/usr/share/texlive/texmf- -dist/fonts/enc/dvips/base/8r.enc}] -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) -[1mktexpk: /build/reproducible-path/genometools-1.6.5+ds/debian/.debhelper/generated/_source/home/.texlive2024/texmf-var/fonts/pk/ljfour/jknappen/ec/tcrm1200.600pk: successfully generated. + +Output written on uniquesub.pdf (3 pages, 105243 bytes). +Transcript written on uniquesub.log. + (./packedindex.aux (./mgth.aux)) (./matstat.aux) ) +(see the transcript file for additional information) ) +(see the transcript file for additional information)mv uniquesub.aux uniquesub-pdf.aux +>>>><>/usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmbi8a +.pfb<>/usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb>>test -e uniquesub.bbl && mv uniquesub.bbl uniquesub-pdf.bbl +> +faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... +mktexpk: /build/reproducible-path/genometools-1.6.5+ds/debian/.debhelper/generated/_source/home/.texlive2024/texmf-var/fonts/pk/ljfour/jknappen/ec/tcrm1200.600pk: successfully generated. ]entering extended mode -(./tagerator-tmp.tex -Overfull \hbox (37.00337pt too wide) in paragraph at lines 441--445 -[]\OT1/ptm/m/n/12 First com-pute the \OT1/ptm/m/it/12 packedin-dex \OT1/ptm/m/n -/12 in-dex file (this as-sumes \OT1/pcr/m/sl/12 chr01.19960731.fsa.gz \OT1/ptm/ -m/n/12 has been copied/linked +exmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb>This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. -[5] -LaTeX2e <2024-06-01> patch level 2 -L3 programming layer <2024-08-16> -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls (./packedindex.bbl) -Document Class: article 2024/02/08 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo -[6)] (./packedindex.aux) ) -(see the transcript file for additional information) Output written on genomediff.pdf (6 pages, 174468 bytes). Transcript written on genomediff.log. -)bibtex genomediff -) -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) -Output written on packedindex.pdf (7 pages, 170406 bytes). -Transcript written on packedindex.log. +mv genomediff.aux genomediff-pdf.aux +pdflatex tallymer-tmp +faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)mv packedindex.aux packedindex-pdf.aux +Output written on mgth.pdf (8 pages, 140119 bytes). +Transcript written on mgth.log. -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)test -e packedindex.bbl && mv packedindex.bbl packedindex-pdf.bbl +Output written on packedindex.pdf (7 pages, 171027 bytes). +Transcript written on packedindex.log. -(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (./optionman.sty) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) -(./tagerator-tmp.aux) -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd)This is BibTeX, Version 0.99d (TeX Live 2025/dev/Debian) +Output written on matstat.pdf (2 pages, 100174 bytes). +Transcript written on matstat.log. +mv mgth.aux mgth-pdf.aux +pdflatex packedindex.tex +mv matstat.aux matstat-pdf.aux +test -e mgth.bbl && mv mgth.bbl mgth-pdf.bbl +test -e matstat.bbl && mv matstat.bbl matstat-pdf.bbl +This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. +./findemptyoutfiles.sh +faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... +test -e genomediff-pdf.aux && mv genomediff-pdf.aux genomediff.aux +bibtex genomediff +entering extended mode +(./repfind.tex +LaTeX2e <2024-06-01> patch level 2 +L3 programming layer <2024-08-16> +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls +Document Class: article 2024/02/08 v1.4n Standard LaTeX document class +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)This is BibTeX, Version 0.99d (TeX Live 2025/dev/Debian) The top-level auxiliary file: genomediff.aux The style file: unsrt.bst Database file #1: gtmanuals.bib test -e genomediff-pdf.bbl || touch genomediff-pdf.bbl +)diff genomediff-pdf.bbl genomediff.bbl || mv genomediff.bbl genomediff-pdf.bbl && rm -f genomediff.bbl -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)diff genomediff-pdf.bbl genomediff.bbl || mv genomediff.bbl genomediff-pdf.bbl && rm -f genomediff.bbl - -[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map0a1,25 +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty0a1,25 > \begin{thebibliography}{1} > > \bibitem{HAU:DOM:WIE:2008} @@ -11059,69 +10701,296 @@ > \newblock \url{http://genometools.org}. > > \end{thebibliography} -mv genomediff.aux genomediff-pdf.aux -test -e genomediff-pdf.aux && mv genomediff-pdf.aux genomediff.aux -test -e genomediff-pdf.bbl && mv genomediff-pdf.bbl genomediff.bbl -pdflatex genomediff.tex -faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... + +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)./execcommand.pl tagerator.tex > tagerator-tmp.tex This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. -}{/usr/share/texlive/texmf- -dist/fonts/enc/dvips/base/8r.enc}] -[2] -[3] -[4] -Overfull \hbox (5.90344pt too wide) in paragraph at lines 265--265 -[]\OT1/pcr/m/n/8 # computing prefix matches with up to 1 differences and at mos -t 5 occurrences in the subject sequences[] -[5] (./tagerator-tmp.aux) ) -(see the transcript file for additional information) -Output written on tagerator-tmp.pdf (5 pages, 120794 bytes). -Transcript written on tagerator-tmp.log. +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.stymv genomediff.aux genomediff-pdf.aux +test -e genomediff-pdf.aux && mv genomediff-pdf.aux genomediff.aux entering extended mode -(./genomediff.texmv tagerator-tmp.pdf tagerator.pdf +(./tallymer-tmp.tex +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) +LaTeX2e <2024-06-01> patch level 2 +L3 programming layer <2024-08-16> +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls +Document Class: article 2024/02/08 v1.4n Standard LaTeX document class +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clotest -e genomediff-pdf.bbl && mv genomediff-pdf.bbl genomediff.bbl +))pdflatex genomediff.tex + +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... +)) +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstpatch.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) +(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (./optionman.sty (./optionman.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. + +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def +No file tallymer-tmp.aux. +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex + +LaTeX Warning: Citation `KUR:NER:STE:WAR:2008' on page 1 undefined on input lin +e 105. +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) + +LaTeX Warning: Reference `Examples' on page 1 undefined on input line 116. + + +[1){/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map +(./repfind.aux) +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) +[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.mapentering extended mode +(./genomediff.tex LaTeX2e <2024-06-01> patch level 2 L3 programming layer <2024-08-16> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2024/02/08 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)# file output/gt-tagerator--q-Q1.gz--maxocc-10--pck-pck-human.out already exists +# file output/gt-tagerator--q-Q1.gz--pck-pck-human--e-2.out already exists +# file output/gt-tagerator--q-Q1.gz--pck-pck-human--e-1--maxocc-5.out already exists + (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))pdflatex tagerator-tmp +entering extended mode +(./packedindex.tex +LaTeX2e <2024-06-01> patch level 2 +L3 programming layer <2024-08-16> +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls +Document Class: article 2024/02/08 v1.4n Standard LaTeX document class +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty) +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... + +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstpatch.sty}{/usr/share/texlive/texmf- +dist/fonts/enc/dvips/base/8r.enc}]) +[2 +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)) +Overfull \hbox (72.74506pt too wide) in paragraph at lines 126--129 +[]\OT1/ptm/m/n/12 Suppose the in-put se-quence $\OML/cmm/m/it/12 S \OT1/cmr/m/n +/12 = \OML/cmm/m/it/12 gagctcgagcgctgct$ \OT1/ptm/m/n/12 is con-tained in the f +ile \OT1/pcr/m/n/12 Repfind-example.fna\OT1/ptm/m/n/12 . + +Overfull \hbox (91.74632pt too wide) in paragraph at lines 130--130 +[]\OT1/pcr/m/n/10 gt suffixerator -db repfinf-sample.seq -indexname repidx -dna + -suf -tis -lcp -ssp -pl + +[3 +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)]) +Overfull \hbox (5.17455pt too wide) in paragraph at lines 163--166 +[]\OT1/ptm/m/n/12 Kurtz, S., Choud-huri, J. V., Ohle-busch, E., Schleier-ma-che +r, C., Stoye, J., Giegerich, + +[4]) +(./optionman.sty) +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty +(/usr/share/texlive/texmf-dist/tex/latex/booktabs/booktabs.sty) +(/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty}{/usr/share/texlive/texmf- +dist/fonts/enc/dvips/base/8r.enc}] (/usr/share/texlive/texmf-dist/tex/latex/listings/lstpatch.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1phv.fd) +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty +Overfull \hbox (49.67761pt too wide) in paragraph at lines 170--170 +[]\OT1/pcr/m/n/12 gt tallymer occratio: error: fopen(): cannot open file 'reads +.prj': + +[2]) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) -(./optionman.sty) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) -(/usr/share/texlive/texmf-dist/tex/latex/booktabs/booktabs.sty) -(/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty + +LaTeX Warning: Reference `Examples' on page 3 undefined on input line 194. + + +[3] +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) +(/usr/share/texlive/texmf-dist/tex/latex/comment/comment.sty +Excluding comment 'comment') +Overfull \hbox (49.67761pt too wide) in paragraph at lines 257--257 +[]\OT1/pcr/m/n/12 gt tallymer occratio: error: fopen(): cannot open file 'reads +.prj': + +[4] (./optionman.sty) +[5] (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) -(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def) -(/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx)) -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty) +[6] +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) +(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def +[7] +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) +(./packedindex.aux) +[8]) +[9] (./tallymer-tmp.aux) + +LaTeX Warning: There were undefined references. + + +LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. + + ) +(see the transcript file for additional information)< +/usr/share/texlive/texmf-dist/fonts/type1/urw/courier/ucrr8a.pfb +[1>{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.styThis is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. + +Output written on tallymer-tmp.pdf (9 pages, 149394 bytes). +Transcript written on tallymer-tmp.log. +pdflatex tallymer-tmp +)faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... + (/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) -(./genomediff.aux) +(./genomediff.aux)This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. + (./repfind.aux) ) +(see the transcript file for additional information) +[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map +Output written on repfind.pdf (4 pages, 110929 bytes). +Transcript written on repfind.log. +}{/usr/share/texlive/texmf- +dist/fonts/enc/dvips/base/8r.enc}pdflatex repfind.tex +] +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) +[1] +[2] +Overfull \hbox (5.0115pt too wide) in paragraph at lines 252--257 +\OT1/ptm/m/n/12 The \OT1/pcr/b/n/12 mkctxmap \OT1/ptm/m/n/12 sub-tool fa-cil-i- +tates late build-ing of a re-verse lookup ta-ble, it can use the \OT1/pcr/m/sl/ +12 prefix.suf +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/omsptm.fd) +[3] +[4] +Overfull \hbox (37.00337pt too wide) in paragraph at lines 441--445 +[]\OT1/ptm/m/n/12 First com-pute the \OT1/ptm/m/it/12 packedin-dex \OT1/ptm/m/n +/12 in-dex file (this as-sumes \OT1/pcr/m/sl/12 chr01.19960731.fsa.gz \OT1/ptm/ +m/n/12 has been copied/linked + +[5] (./packedindex.bbl) +[6] (./packedindex.aux) ) +(see the transcript file for additional information) patch level 2 +L3 programming layer <2024-08-16> +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls +Document Class: article 2024/02/08 v1.4n Standard LaTeX document class +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clofaketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... +)) +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty> +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty) +(/usr/share/texlive/texmf-dist/tex/latex/url/url.styentering extended mode +(./tallymer-tmp.tex +LaTeX2e <2024-06-01> patch level 2 +L3 programming layer <2024-08-16> +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls) +Document Class: article 2024/02/08 v1.4n Standard LaTeX document class +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty) +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty (./optionman.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty} +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstpatch.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd]) +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)entering extended mode +(./repfind.tex +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) +LaTeX2e <2024-06-01> patch level 2 +L3 programming layer <2024-08-16> +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls +Document Class: article 2024/02/08 v1.4n Standard LaTeX document class +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty))) (./optionman.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty +No file tagerator-tmp.aux. +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty LaTeX Warning: Citation `HAU:DOM:WIE:2008' on page 1 undefined on input line 90 . @@ -11137,15 +11006,105 @@ LaTeX Warning: Citation `genometools' on page 1 undefined on input line 98. -(/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) -[1] (/usr/share/texlive/texmf-dist/tex/latex/base/omscmr.fd) +(/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd)) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) +(./tallymer-tmp.aux) +[1] +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) +[1) (/usr/share/texlive/texmf-dist/tex/latex/base/omscmr.fd) +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map) +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) +[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (./optionman.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) +(./repfind.aux) +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) +[1 +[2{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map +Output written on packedindex.pdf (7 pages, 170406 bytes). +Transcript written on packedindex.log. +] +[3]mv packedindex.aux packedindex-pdf.aux +test -e packedindex.bbl && mv packedindex.bbl packedindex-pdf.bbl + +[4}{/usr/share/texlive/texmf- +dist/fonts/enc/dvips/base/8r.enc}]] +Overfull \hbox (35.00766pt too wide) in paragraph at lines 324--325 +[][][][][][][][][][][][][][][][][][][][][][][][] +(./genomediff.bbl +[2]) +[5 +[3]]}{/usr/share/texlive/texmf- +dist/fonts/enc/dvips/base/8r.enc} +[4]] +Overfull \hbox (5.90344pt too wide) in paragraph at lines 265--265 +[]\OT1/pcr/m/n/8 # computing prefix matches with up to 1 differences and at mos +t 5 occurrences in the subject sequences[] + +[5] (./tagerator-tmp.aux) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1phv.fd) ) +(see the transcript file for additional information) +[3 +Overfull \hbox (49.67761pt too wide) in paragraph at lines 257--257 +[]\OT1/pcr/m/n/12 gt tallymer occratio: error: fopen(): cannot open file 'reads +.prj': + +[4}{/usr/share/texlive/texmf- +dist/fonts/enc/dvips/base/8r.enc}] +[5] [2] +[6] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) +[7 +Overfull \hbox (72.74506pt too wide) in paragraph at lines 126--129 +[]\OT1/ptm/m/n/12 Suppose the in-put se-quence $\OML/cmm/m/it/12 S \OT1/cmr/m/n +/12 = \OML/cmm/m/it/12 gagctcgagcgctgct$ \OT1/ptm/m/n/12 is con-tained in the f +ile \OT1/pcr/m/n/12 Repfind-example.fna\OT1/ptm/m/n/12 . + +Overfull \hbox (91.74632pt too wide) in paragraph at lines 130--130 +[]\OT1/pcr/m/n/10 gt suffixerator -db repfinf-sample.seq -indexname repidx -dna + -suf -tis -lcp -ssp -pl + [3] +Output written on tagerator-tmp.pdf (5 pages, 120794 bytes). +Transcript written on tagerator-tmp.log. +] +Overfull \hbox (5.17455pt too wide) in paragraph at lines 163--166 +[]\OT1/ptm/m/n/12 Kurtz, S., Choud-huri, J. V., Ohle-busch, E., Schleier-ma-che +r, C., Stoye, J., Giegerich, + [4] -Overfull \hbox (35.00766pt too wide) in paragraph at lines 324--325 -[][][][][][][][][][][][][][][][][][][][][][][][] -(./genomediff.bbl) -[5] (./genomediff.aux) +[8]pdflatex tagerator-tmp + +[9]faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... +This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. + (./genomediff.aux) LaTeX Warning: There were undefined references. @@ -11157,15 +11116,36 @@ genometools-1.6.5+ds/debian/.debhelper/generated/_source/home/.texlive2024/texm f-var/fonts/pk/ljfour/jknappen/ec/tctt1200.600pk> < -/usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr17.pfb> (./tallymer-tmp.aux)/usr/share/texlive/texmf-d +ist/fonts/type1/public/amsfonts/cm/cmex10.pfb (./repfind.aux) ) +(see the transcript file for additional information)>>>>>>></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmb8a.pfb>/usr/shar +e/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb><< +/usr/share/texlive/texmf +-dist/fonts/type1/urw/times/utmri8a.pfb>/usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr17.pfb> patch level 2 +L3 programming layer <2024-08-16> +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls +Document Class: article 2024/02/08 v1.4n Standard LaTeX document class +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. +) +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (./optionman.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) +(./tagerator-tmp.aux) +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) +[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.mapentering extended mode (./genomediff.tex LaTeX2e <2024-06-01> patch level 2 L3 programming layer <2024-08-16> @@ -11194,22 +11207,41 @@ (/usr/share/texlive/texmf-dist/tex/latex/listings/lstpatch.sty) (/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) -(./optionman.sty) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) -(/usr/share/texlive/texmf-dist/tex/latex/booktabs/booktabs.sty) +(./optionman.sty)}{/usr/share/texlive/texmf- +dist/fonts/enc/dvips/base/8r.enc} (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) +(/usr/share/texlive/texmf-dist/tex/latex/booktabs/booktabs.sty)] (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty -(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) +[2] +[3] +[4] +Overfull \hbox (5.90344pt too wide) in paragraph at lines 265--265 +[]\OT1/pcr/m/n/8 # computing prefix matches with up to 1 differences and at mos +t 5 occurrences in the subject sequences[] + +[5 +(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg]) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def) (/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx)) (/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty) (/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) -(./genomediff.aux) +(./genomediff.aux) (./tagerator-tmp.aux) ) +(see the transcript file for additional information) +[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) [1] (/usr/share/texlive/texmf-dist/tex/latex/base/omscmr.fd) [2] @@ -11221,7 +11253,10 @@ [5] (./genomediff.aux) ) (see the transcript file for additional information) +Output written on tagerator-tmp.pdf (5 pages, 120794 bytes). +Transcript written on tagerator-tmp.log. + < /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr17.pfb>/build/reproducible-path/genometools-1.6.5+ds/debian/tmp/usr/bin/genometools-config chmod 755 /build/reproducible-path/genometools-1.6.5+ds/debian/tmp/usr/bin/genometools-config -............................................................................................ +........................................................................................... test ! -d ./doc/manpages || \ ((test -d /build/reproducible-path/genometools-1.6.5+ds/debian/tmp/usr/share/man/man1 || mkdir -p /build/reproducible-path/genometools-1.6.5+ds/debian/tmp/usr/share/man/man1) \ && cp ./doc/manpages/* /build/reproducible-path/genometools-1.6.5+ds/debian/tmp/usr/share/man/man1) @@ -11499,10 +11535,10 @@ dpkg-gencontrol: warning: Depends field of package libgenometools0-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb +dpkg-deb: building package 'libgenometools0-dev' in '../libgenometools0-dev_1.6.5+ds-2.2_i386.deb'. dpkg-deb: building package 'genometools' in '../genometools_1.6.5+ds-2.2_i386.deb'. dpkg-deb: building package 'libgenometools0t64' in '../libgenometools0t64_1.6.5+ds-2.2_i386.deb'. dpkg-deb: building package 'python3-genometools' in '../python3-genometools_1.6.5+ds-2.2_all.deb'. -dpkg-deb: building package 'libgenometools0-dev' in '../libgenometools0-dev_1.6.5+ds-2.2_i386.deb'. dpkg-deb: building package 'genometools-doc' in '../genometools-doc_1.6.5+ds-2.2_all.deb'. dpkg-deb: building package 'libgenometools0t64-dbgsym' in '../libgenometools0t64-dbgsym_1.6.5+ds-2.2_i386.deb'. dpkg-deb: building package 'genometools-common' in '../genometools-common_1.6.5+ds-2.2_all.deb'. @@ -11513,12 +11549,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2607/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2607/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/19061 and its subdirectories -I: Current time: Wed Oct 30 21:16:47 -12 2024 -I: pbuilder-time-stamp: 1730366207 +I: removing directory /srv/workspace/pbuilder/2607 and its subdirectories +I: Current time: Thu Dec 4 05:45:47 +14 2025 +I: pbuilder-time-stamp: 1764776747