Diff of the two buildlogs: -- --- b1/build.log 2024-11-11 14:15:42.898849390 +0000 +++ b2/build.log 2024-11-11 14:17:46.342450900 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Nov 11 02:12:04 -12 2024 -I: pbuilder-time-stamp: 1731334324 +I: Current time: Mon Dec 15 10:38:45 +14 2025 +I: pbuilder-time-stamp: 1765744725 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -28,54 +28,86 @@ dpkg-source: info: applying enable_complex_build.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/13953/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/111551/tmp/hooks/D01_modify_environment starting +debug: Running on ionos16-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 14 20:38 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/111551/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/111551/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=21 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='07241b5e7a0f4c7abb8de75899bfabec' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='13953' - PS1='# ' - PS2='> ' + INVOCATION_ID=d7d71b0bae2948baaa5089503cc20dfa + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=111551 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.fVd8ML4I/pbuilderrc_gz2s --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.fVd8ML4I/b1 --logfile b1/build.log fenicsx-performance-tests_0.9.0-2.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.fVd8ML4I/pbuilderrc_N80H --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.fVd8ML4I/b2 --logfile b2/build.log fenicsx-performance-tests_0.9.0-2.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos2-i386 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/13953/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/111551/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -429,7 +461,7 @@ Get: 304 http://deb.debian.org/debian unstable/main i386 python3-setuptools all 75.2.0-1 [731 kB] Get: 305 http://deb.debian.org/debian unstable/main i386 python3-ffcx all 1:0.9.0-2 [94.9 kB] Get: 306 http://deb.debian.org/debian unstable/main i386 libdolfinx-dev i386 1:0.9.0-2 [201 kB] -Fetched 216 MB in 5s (42.3 MB/s) +Fetched 216 MB in 6s (36.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19955 files and directories currently installed.) @@ -1414,8 +1446,8 @@ Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' -Local time is now: Mon Nov 11 14:13:08 UTC 2024. -Universal Time is now: Mon Nov 11 14:13:08 UTC 2024. +Local time is now: Sun Dec 14 20:39:26 UTC 2025. +Universal Time is now: Sun Dec 14 20:39:26 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libboost-atomic1.83.0:i386 (1.83.0-3.2) ... @@ -1724,7 +1756,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/fenicsx-performance-tests-0.9.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../fenicsx-performance-tests_0.9.0-2_source.changes +I: user script /srv/workspace/pbuilder/111551/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/111551/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/fenicsx-performance-tests-0.9.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../fenicsx-performance-tests_0.9.0-2_source.changes dpkg-buildpackage: info: source package fenicsx-performance-tests dpkg-buildpackage: info: source version 0.9.0-2 dpkg-buildpackage: info: source distribution unstable @@ -1807,7 +1843,7 @@ -- Adding boost_program_options dependencies: headers -- Found Boost: /usr/lib/i386-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.70") found components: program_options -- -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall --- Configuring done (4.2s) +-- Configuring done (2.2s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -1820,7 +1856,7 @@ -- Build files have been written to: /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-i686-linux-gnu make[1]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0' dh_auto_build -O--buildsystem=cmake -O--sourcedirectory=src - cd obj-i686-linux-gnu && make -j11 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-i686-linux-gnu && make -j21 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -B/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-i686-linux-gnu/CMakeFiles /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-i686-linux-gnu//CMakeFiles/progress.marks @@ -1828,30 +1864,30 @@ make[2]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-i686-linux-gnu' make -f CMakeFiles/dolfinx-scaling-test.dir/build.make CMakeFiles/dolfinx-scaling-test.dir/depend make[3]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-i686-linux-gnu' -[ 9%] Generating Elasticity.c -ffcx /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/Elasticity.py -[ 18%] Generating Poisson.c +[ 9%] Generating Poisson.c +[ 18%] Generating Elasticity.c ffcx /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/Poisson.py +ffcx /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/Elasticity.py cd /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenicsx-performance-tests-0.9.0/src /build/reproducible-path/fenicsx-performance-tests-0.9.0/src /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-i686-linux-gnu /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-i686-linux-gnu /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-i686-linux-gnu/CMakeFiles/dolfinx-scaling-test.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-i686-linux-gnu' make -f CMakeFiles/dolfinx-scaling-test.dir/build.make CMakeFiles/dolfinx-scaling-test.dir/build make[3]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-i686-linux-gnu' -[ 27%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o -/usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-i686-linux-gnu -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/i386-linux-gnu/mpich/include -isystem /usr/include/hdf5/mpich -isystem /usr/lib/petscdir/petsc3.21/i386-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.21/i386-linux-gnu-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/main.cpp -[ 36%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o -/usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-i686-linux-gnu -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/i386-linux-gnu/mpich/include -isystem /usr/include/hdf5/mpich -isystem /usr/lib/petscdir/petsc3.21/i386-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.21/i386-linux-gnu-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.cpp +[ 36%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o [ 45%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o +[ 45%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o +[ 54%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-i686-linux-gnu -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/i386-linux-gnu/mpich/include -isystem /usr/include/hdf5/mpich -isystem /usr/lib/petscdir/petsc3.21/i386-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.21/i386-linux-gnu-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/elasticity_problem.cpp -[ 54%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o [ 63%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o +/usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-i686-linux-gnu -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/i386-linux-gnu/mpich/include -isystem /usr/include/hdf5/mpich -isystem /usr/lib/petscdir/petsc3.21/i386-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.21/i386-linux-gnu-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/main.cpp +[ 72%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/mem.cpp.o /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-i686-linux-gnu -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/i386-linux-gnu/mpich/include -isystem /usr/include/hdf5/mpich -isystem /usr/lib/petscdir/petsc3.21/i386-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.21/i386-linux-gnu-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/mesh.cpp -[ 72%] Building C object CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o +/usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-i686-linux-gnu -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/i386-linux-gnu/mpich/include -isystem /usr/include/hdf5/mpich -isystem /usr/lib/petscdir/petsc3.21/i386-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.21/i386-linux-gnu-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/cgpoisson_problem.cpp [ 81%] Building C object CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-i686-linux-gnu -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/i386-linux-gnu/mpich/include -isystem /usr/include/hdf5/mpich -isystem /usr/lib/petscdir/petsc3.21/i386-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.21/i386-linux-gnu-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/poisson_problem.cpp -[ 90%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/mem.cpp.o /usr/bin/c++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-i686-linux-gnu -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/i386-linux-gnu/mpich/include -isystem /usr/include/hdf5/mpich -isystem /usr/lib/petscdir/petsc3.21/i386-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.21/i386-linux-gnu-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/mem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/mem.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/mem.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/src/mem.cpp -/usr/bin/cc -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-i686-linux-gnu -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/i386-linux-gnu/mpich/include -isystem /usr/include/hdf5/mpich -isystem /usr/lib/petscdir/petsc3.21/i386-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.21/i386-linux-gnu-real/include -Ofast -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o -MF CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o.d -o CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-i686-linux-gnu/Elasticity.c +[ 90%] Building C object CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o /usr/bin/cc -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-i686-linux-gnu -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/i386-linux-gnu/mpich/include -isystem /usr/include/hdf5/mpich -isystem /usr/lib/petscdir/petsc3.21/i386-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.21/i386-linux-gnu-real/include -Ofast -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o -MF CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o.d -o CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-i686-linux-gnu/Poisson.c +/usr/bin/cc -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.9.0\" -DFMT_SHARED -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL -DSPDLOG_SHARED_LIB -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-i686-linux-gnu -I/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/i386-linux-gnu/mpich/include -isystem /usr/include/hdf5/mpich -isystem /usr/lib/petscdir/petsc3.21/i386-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.21/i386-linux-gnu-real/include -Ofast -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o -MF CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o.d -o CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o -c /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-i686-linux-gnu/Elasticity.c [100%] Linking CXX executable dolfinx-scaling-test /usr/bin/cmake -E cmake_link_script CMakeFiles/dolfinx-scaling-test.dir/link.txt --verbose=1 /usr/bin/c++ -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wl,-z,relro "CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o" "CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o" "CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o" "CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o" "CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o" "CMakeFiles/dolfinx-scaling-test.dir/mem.cpp.o" "CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o" "CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o" -o dolfinx-scaling-test /usr/lib/i386-linux-gnu/libdolfinx_real.so.0.9.0 /usr/lib/i386-linux-gnu/libboost_program_options.so.1.83.0 -lpthread /usr/lib/i386-linux-gnu/libpugixml.so.1.14 /usr/lib/i386-linux-gnu/libbasix.so.0.9.0 /usr/lib/i386-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/i386-linux-gnu/mpich/lib/libmpichcxx.so /usr/lib/i386-linux-gnu/mpich/lib/libmpich.so /usr/lib/i386-linux-gnu/libspdlog.so.1.12.0 /usr/lib/i386-linux-gnu/libfmt.so.10.1.0 /usr/lib/i386-linux-gnu/hdf5/mpich/libhdf5.so /usr/lib/slepcdir/slepc3.21/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.21/i386-linux-gnu-real/lib/libpetsc_real.so @@ -1864,67 +1900,67 @@ make[1]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0' debian/tests/run-dolfinx-scaling-test -p /build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-i686-linux-gnu ==== elasticity weak scaling (3 processes with ndofs=10000) ==== -[2024-11-11 02:14:37.501] [RANK: 0] [info] Using partitioner with 69312 cell data -[2024-11-11 02:14:37.502] [RANK: 0] [info] Compute partition of cells across ranks -[2024-11-11 02:14:37.502] [RANK: 0] [info] Building mesh dual graph -[2024-11-11 02:14:37.502] [RANK: 0] [info] Build local part of mesh dual graph (mixed) -[2024-11-11 02:14:37.567] [RANK: 0] [info] Build nonlocal part of mesh dual graph -[2024-11-11 02:14:37.582] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-11 02:14:37.582] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-11 02:14:37.582] [RANK: 0] [info] Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.6666666666666666, 0.6666666666666666 -[2024-11-11 02:14:37.584] [RANK: 0] [info] Graph edges (local: 66332, non-local: 962) -[2024-11-11 02:14:37.584] [RANK: 0] [info] Compute graph partition using PT-SCOTCH -[2024-11-11 02:14:44.551] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 -[2024-11-11 02:14:44.574] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 -[2024-11-11 02:14:44.584] [RANK: 0] [info] Extract basic topology: 68596->68596 -[2024-11-11 02:14:44.584] [RANK: 0] [info] Build local dual graph -[2024-11-11 02:14:44.584] [RANK: 0] [info] Build local part of mesh dual graph (mixed) -[2024-11-11 02:14:44.625] [RANK: 0] [info] GPS pseudo-diameter:(119) 16767-1188 -[2024-11-11 02:14:44.630] [RANK: 0] [info] Create topology (single cell type) -[2024-11-11 02:14:44.630] [RANK: 0] [info] Create topology (generalised) -[2024-11-11 02:14:44.641] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 -[2024-11-11 02:14:44.642] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 -[2024-11-11 02:14:44.649] [RANK: 0] [info] Compute ghost indices -[2024-11-11 02:14:44.649] [RANK: 0] [info] Computing communication graph edges (using PCX algorithm). Number of input edges: 0 -[2024-11-11 02:14:44.649] [RANK: 0] [info] Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 -[2024-11-11 02:14:44.652] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 -[2024-11-11 02:14:44.652] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 -[2024-11-11 02:14:44.662] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-11 02:14:44.663] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-11 02:14:44.663] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-11 02:14:44.663] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-11 02:14:44.667] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 -[2024-11-11 02:14:44.667] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 -[2024-11-11 02:14:44.667] [RANK: 0] [info] Number of neighbourhood source ranks in distribute_to_postoffice: 0 -[2024-11-11 02:14:44.667] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-11 02:14:44.667] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-11 02:14:44.667] [RANK: 0] [info] Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.6666666666666666 -[2024-11-11 02:14:44.668] [RANK: 0] [info] Checking required entities per dimension -[2024-11-11 02:14:44.668] [RANK: 0] [info] Cell type: 0 dofmap: 17149x4 -[2024-11-11 02:14:44.673] [RANK: 0] [info] Global index computation -[2024-11-11 02:14:44.674] [RANK: 0] [info] Got 1 index_maps -[2024-11-11 02:14:44.674] [RANK: 0] [info] Get global indices -[2024-11-11 02:14:44.676] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-11 02:14:44.676] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2025-12-15 10:40:07.725] [RANK: 0] [info] Using partitioner with 69312 cell data +[2025-12-15 10:40:07.726] [RANK: 0] [info] Compute partition of cells across ranks +[2025-12-15 10:40:07.726] [RANK: 0] [info] Building mesh dual graph +[2025-12-15 10:40:07.726] [RANK: 0] [info] Build local part of mesh dual graph (mixed) +[2025-12-15 10:40:07.754] [RANK: 0] [info] Build nonlocal part of mesh dual graph +[2025-12-15 10:40:07.755] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2025-12-15 10:40:07.755] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2025-12-15 10:40:07.755] [RANK: 0] [info] Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.6666666666666666, 0.6666666666666666 +[2025-12-15 10:40:07.756] [RANK: 0] [info] Graph edges (local: 66332, non-local: 962) +[2025-12-15 10:40:07.756] [RANK: 0] [info] Compute graph partition using PT-SCOTCH +[2025-12-15 10:40:12.385] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 +[2025-12-15 10:40:12.386] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 +[2025-12-15 10:40:12.388] [RANK: 0] [info] Extract basic topology: 69080->69080 +[2025-12-15 10:40:12.388] [RANK: 0] [info] Build local dual graph +[2025-12-15 10:40:12.388] [RANK: 0] [info] Build local part of mesh dual graph (mixed) +[2025-12-15 10:40:12.406] [RANK: 0] [info] GPS pseudo-diameter:(121) 15994-623 +[2025-12-15 10:40:12.408] [RANK: 0] [info] Create topology (single cell type) +[2025-12-15 10:40:12.408] [RANK: 0] [info] Create topology (generalised) +[2025-12-15 10:40:12.422] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 +[2025-12-15 10:40:12.422] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 +[2025-12-15 10:40:12.428] [RANK: 0] [info] Compute ghost indices +[2025-12-15 10:40:12.428] [RANK: 0] [info] Computing communication graph edges (using PCX algorithm). Number of input edges: 0 +[2025-12-15 10:40:12.428] [RANK: 0] [info] Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 +[2025-12-15 10:40:12.430] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 +[2025-12-15 10:40:12.431] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 +[2025-12-15 10:40:12.436] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2025-12-15 10:40:12.438] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2025-12-15 10:40:12.438] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2025-12-15 10:40:12.438] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2025-12-15 10:40:12.441] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 +[2025-12-15 10:40:12.441] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 +[2025-12-15 10:40:12.441] [RANK: 0] [info] Number of neighbourhood source ranks in distribute_to_postoffice: 0 +[2025-12-15 10:40:12.441] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2025-12-15 10:40:12.441] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2025-12-15 10:40:12.441] [RANK: 0] [info] Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.6666666666666666 +[2025-12-15 10:40:12.441] [RANK: 0] [info] Checking required entities per dimension +[2025-12-15 10:40:12.441] [RANK: 0] [info] Cell type: 0 dofmap: 17270x4 +[2025-12-15 10:40:12.444] [RANK: 0] [info] Global index computation +[2025-12-15 10:40:12.444] [RANK: 0] [info] Got 1 index_maps +[2025-12-15 10:40:12.444] [RANK: 0] [info] Get global indices +[2025-12-15 10:40:12.447] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2025-12-15 10:40:12.447] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 UnitCube (24x19x19) to be refined 0 times -[2024-11-11 02:14:44.678] [RANK: 0] [info] Computing mesh entities of dimension 2 -[2024-11-11 02:14:44.711] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-11 02:14:44.713] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-11 02:14:44.773] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-11 02:14:44.773] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-11 02:14:44.775] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) -[2024-11-11 02:14:44.775] [RANK: 0] [info] Computing mesh connectivity 2-3 from transpose. -[2024-11-11 02:14:44.777] [RANK: 0] [info] Checking required entities per dimension -[2024-11-11 02:14:44.777] [RANK: 0] [info] Cell type: 0 dofmap: 17149x4 -[2024-11-11 02:14:44.782] [RANK: 0] [info] Global index computation -[2024-11-11 02:14:44.782] [RANK: 0] [info] Got 1 index_maps -[2024-11-11 02:14:44.783] [RANK: 0] [info] Get global indices -[2024-11-11 02:14:44.783] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-11 02:14:44.783] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-11 02:14:44.784] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) -[2024-11-11 02:14:44.784] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) -[2024-11-11 02:14:44.784] [RANK: 0] [info] Requesting connectivity (2, 0) - (0, 0) -[2024-11-11 02:14:44.831] [RANK: 0] [info] Column ghost size increased from 217 to 538 +[2025-12-15 10:40:12.448] [RANK: 0] [info] Computing mesh entities of dimension 2 +[2025-12-15 10:40:12.464] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2025-12-15 10:40:12.468] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2025-12-15 10:40:12.496] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2025-12-15 10:40:12.496] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2025-12-15 10:40:12.496] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) +[2025-12-15 10:40:12.496] [RANK: 0] [info] Computing mesh connectivity 2-3 from transpose. +[2025-12-15 10:40:12.497] [RANK: 0] [info] Checking required entities per dimension +[2025-12-15 10:40:12.497] [RANK: 0] [info] Cell type: 0 dofmap: 17270x4 +[2025-12-15 10:40:12.500] [RANK: 0] [info] Global index computation +[2025-12-15 10:40:12.500] [RANK: 0] [info] Got 1 index_maps +[2025-12-15 10:40:12.500] [RANK: 0] [info] Get global indices +[2025-12-15 10:40:12.500] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2025-12-15 10:40:12.500] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2025-12-15 10:40:12.500] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) +[2025-12-15 10:40:12.500] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) +[2025-12-15 10:40:12.500] [RANK: 0] [info] Requesting connectivity (2, 0) - (0, 0) +[2025-12-15 10:40:12.517] [RANK: 0] [info] Column ghost size increased from 228 to 560 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.9.0 @@ -1938,7 +1974,7 @@ Total degrees of freedom: 30000 (30 thousand) Average degrees of freedom per process: 10000 ---------------------------------------------------------------- -[2024-11-11 02:14:45.153] [RANK: 0] [info] PETSc Krylov solver starting to solve system. +[2025-12-15 10:40:12.630] [RANK: 0] [info] PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero @@ -1957,7 +1993,7 @@ Number of levels of aggressive coarsening 1 Square graph aggressive coarsening Number smoothing steps 1 - Complexity: grid = 1.0952 operator = 1.39535 + Complexity: grid = 1.0978 operator = 1.40953 Coarse grid solver -- level 0 ------------------------------- KSP Object: (mg_coarse_) 3 MPI processes type: preonly @@ -1982,34 +2018,34 @@ tolerance for zero pivot 2.22045e-14 using diagonal shift on blocks to prevent zero pivot [INBLOCKS] matrix ordering: nd - factor fill ratio given 5., needed 1.14507 + factor fill ratio given 5., needed 1.18318 Factored matrix follows: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij - rows=234, cols=234, bs=6 + rows=270, cols=270, bs=6 package used to perform factorization: petsc - total: nonzeros=50580, allocated nonzeros=50580 + total: nonzeros=68364, allocated nonzeros=68364 using I-node routines: found 65 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij - rows=234, cols=234, bs=6 - total: nonzeros=44172, allocated nonzeros=44172 + rows=270, cols=270, bs=6 + total: nonzeros=57780, allocated nonzeros=57780 total number of mallocs used during MatSetValues calls=0 - using I-node routines: found 77 nodes, limit used is 5 + using I-node routines: found 88 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij - rows=234, cols=234, bs=6 - total: nonzeros=44172, allocated nonzeros=44172 + rows=270, cols=270, bs=6 + total: nonzeros=57780, allocated nonzeros=57780 total number of mallocs used during MatSetValues calls=0 - using I-node (on process 0) routines: found 77 nodes, limit used is 5 + using I-node (on process 0) routines: found 88 nodes, limit used is 5 Down solver (pre-smoother) on level 1 ------------------------------- KSP Object: (mg_levels_1_) 3 MPI processes type: chebyshev Chebyshev polynomial of first kind - eigenvalue targets used: min 0.26314, max 2.89454 - eigenvalues provided (min 0.0345199, max 2.6314) with transform: [0. 0.1; 0. 1.1] + eigenvalue targets used: min 0.267929, max 2.94722 + eigenvalues provided (min 0.0383569, max 2.67929) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning @@ -2020,18 +2056,18 @@ linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij - rows=2622, cols=2622, bs=6 - total: nonzeros=450612, allocated nonzeros=450612 + rows=2664, cols=2664, bs=6 + total: nonzeros=454752, allocated nonzeros=454752 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation - using I-node (on process 0) routines: found 268 nodes, limit used is 5 + using I-node (on process 0) routines: found 280 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) Down solver (pre-smoother) on level 2 ------------------------------- KSP Object: (mg_levels_2_) 3 MPI processes type: chebyshev Chebyshev polynomial of first kind - eigenvalue targets used: min 0.258509, max 2.8436 - eigenvalues provided (min 0.0698209, max 2.58509) with transform: [0. 0.1; 0. 1.1] + eigenvalue targets used: min 0.258539, max 2.84393 + eigenvalues provided (min 0.0709738, max 2.58539) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning @@ -2046,7 +2082,7 @@ total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space - using I-node (on process 0) routines: found 3345 nodes, limit used is 5 + using I-node (on process 0) routines: found 3382 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) linear system matrix = precond matrix: Mat Object: 3 MPI processes @@ -2055,46 +2091,46 @@ total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space - using I-node (on process 0) routines: found 3345 nodes, limit used is 5 + using I-node (on process 0) routines: found 3382 nodes, limit used is 5 [MPI_MAX] Summary of timings | reps wall avg wall tot ------------------------------------------------------------------------------------------------------- -Build BoxMesh (tetrahedra) | 1 7.180000 7.180000 -Build dofmap data | 2 0.010000 0.020000 -Build sparsity | 1 0.010000 0.010000 +Build BoxMesh (tetrahedra) | 1 4.720000 4.720000 +Build dofmap data | 2 0.000000 0.000000 +Build sparsity | 1 0.000000 0.000000 Compute connectivity 2-0 | 1 0.000000 0.000000 Compute dof reordering map | 2 0.000000 0.000000 -Compute entities of dim = 2 | 1 0.100000 0.100000 -Compute graph partition (SCOTCH) | 1 6.960000 6.960000 -Compute local part of mesh dual graph (mixed) | 2 0.055000 0.110000 +Compute entities of dim = 2 | 1 0.060000 0.060000 +Compute graph partition (SCOTCH) | 1 4.620000 4.620000 +Compute local part of mesh dual graph (mixed) | 2 0.025000 0.050000 Compute local-to-local map | 1 0.000000 0.000000 -Compute non-local part of mesh dual graph | 1 0.020000 0.020000 +Compute non-local part of mesh dual graph | 1 0.010000 0.010000 Compute-local-to-global links for global/local adjacency list | 1 0.000000 0.000000 -Distribute fixed-degree adjacency list to destination ranks | 1 0.060000 0.060000 +Distribute fixed-degree adjacency list to destination ranks | 1 0.020000 0.020000 Distribute row-wise data (scalable) | 1 0.000000 0.000000 -GPS: create_level_structure | 2 0.003333 0.010000 +GPS: create_level_structure | 2 0.002500 0.010000 Gibbs-Poole-Stockmeyer ordering | 1 0.010000 0.010000 -Init MPI | 1 0.150000 0.150000 -Init PETSc | 1 0.020000 0.020000 -Init dofmap from element dofmap | 2 0.010000 0.020000 +Init MPI | 1 0.030000 0.030000 +Init PETSc | 1 0.000000 0.000000 +Init dofmap from element dofmap | 2 0.000000 0.000000 Init logging | 1 0.000000 0.000000 -PETSc Krylov solver | 1 1.340000 1.340000 -SCOTCH: call SCOTCH_dgraphBuild | 1 0.000000 0.000000 -SCOTCH: call SCOTCH_dgraphPart | 1 6.960000 6.960000 +PETSc Krylov solver | 1 0.470000 0.470000 +SCOTCH: call SCOTCH_dgraphBuild | 1 0.010000 0.010000 +SCOTCH: call SCOTCH_dgraphPart | 1 4.620000 4.620000 SparsityPattern::finalize | 1 0.010000 0.010000 Topology: create | 1 0.040000 0.040000 -Topology: determine shared index ownership | 1 0.020000 0.020000 -Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.000000 0.000000 -ZZZ Assemble matrix | 1 0.280000 0.280000 +Topology: determine shared index ownership | 1 0.010000 0.010000 +Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.010000 0.010000 +ZZZ Assemble matrix | 1 0.090000 0.090000 ZZZ Assemble vector | 1 0.010000 0.010000 -ZZZ Create Mesh | 1 7.190000 7.190000 -ZZZ Create RHS function | 1 0.030000 0.030000 +ZZZ Create Mesh | 1 4.720000 4.720000 +ZZZ Create RHS function | 1 0.010000 0.010000 ZZZ Create boundary conditions | 1 0.000000 0.000000 -ZZZ Create facets and facet->cell connectivity | 1 0.100000 0.100000 +ZZZ Create facets and facet->cell connectivity | 1 0.060000 0.060000 ZZZ Create forms | 1 0.000000 0.000000 -ZZZ Create near-nullspace | 1 0.020000 0.020000 -ZZZ FunctionSpace | 1 0.010000 0.010000 -ZZZ Solve | 1 1.340000 1.340000 +ZZZ Create near-nullspace | 1 0.010000 0.010000 +ZZZ FunctionSpace | 1 0.000000 0.000000 +ZZZ Solve | 1 0.470000 0.470000 *** Number of Krylov iterations: 18 *** Solution norm: 3.6795e-05 **************************************************************************************************************************************************************** @@ -2103,17 +2139,17 @@ ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ -/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-i686-linux-gnu/dolfinx-scaling-test on a named ionos2-i386 with 3 processes, by pbuilder1 on Mon Nov 11 02:14:46 2024 +/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-i686-linux-gnu/dolfinx-scaling-test on a named i-capture-the-hostname with 3 processes, by pbuilder2 on Mon Dec 15 10:40:13 2025 Using Petsc Release Version 3.21.6, Sep 28, 2024 Max Max/Min Avg Total -Time (sec): 9.000e+00 1.000 8.998e+00 +Time (sec): 5.384e+00 1.000 5.384e+00 Objects: 0.000e+00 0.000 0.000e+00 -Flops: 2.296e+08 1.158 2.116e+08 6.349e+08 -Flops/sec: 2.551e+07 1.157 2.352e+07 7.056e+07 -MPI Msg Count: 7.920e+02 1.043 7.710e+02 2.313e+03 -MPI Msg Len (bytes): 7.622e+06 1.478 8.066e+03 1.866e+07 -MPI Reductions: 4.750e+02 1.000 +Flops: 2.206e+08 1.050 2.154e+08 6.463e+08 +Flops/sec: 4.097e+07 1.050 4.001e+07 1.200e+08 +MPI Msg Count: 7.960e+02 1.043 7.750e+02 2.325e+03 +MPI Msg Len (bytes): 7.669e+06 1.429 8.290e+03 1.927e+07 +MPI Reductions: 4.770e+02 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops @@ -2121,7 +2157,7 @@ Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total - 0: Main Stage: 8.9984e+00 100.0% 6.3492e+08 100.0% 2.313e+03 100.0% 8.066e+03 100.0% 4.570e+02 96.2% + 0: Main Stage: 5.3841e+00 100.0% 6.4630e+08 100.0% 2.325e+03 100.0% 8.290e+03 100.0% 4.590e+02 96.2% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. @@ -2145,80 +2181,80 @@ --- Event Stage 0: Main Stage -BuildTwoSided 111 1.0 2.2801e-01 26.2 0.00e+00 0.0 1.9e+02 4.0e+00 1.1e+02 2 0 8 0 23 2 0 8 0 24 0 -BuildTwoSidedF 84 1.0 2.2796e-01 25.0 0.00e+00 0.0 1.1e+02 5.2e+04 8.4e+01 2 0 5 30 18 2 0 5 30 18 0 -MatMult 190 1.0 2.5319e-01 1.1 1.20e+08 1.1 1.1e+03 5.7e+03 0.0e+00 3 53 49 35 0 3 53 49 35 0 1321 -MatMultAdd 38 1.0 2.7636e-02 1.4 9.87e+06 1.1 1.5e+02 1.6e+03 0.0e+00 0 4 7 1 0 0 4 7 1 0 1009 -MatMultTranspose 38 1.0 4.2196e-02 1.5 9.88e+06 1.1 1.5e+02 1.6e+03 0.0e+00 0 4 7 1 0 0 4 7 1 0 662 -MatSolve 19 0.0 3.1966e-03 0.0 1.92e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 600 -MatLUFactorSym 1 1.0 2.5270e-03 110.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatLUFactorNum 1 1.0 7.6960e-03 1801.5 7.02e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 912 -MatScale 6 1.0 1.7250e-03 1.2 6.24e+05 1.1 1.2e+01 1.6e+03 0.0e+00 0 0 1 0 0 0 0 1 0 0 1027 -MatResidual 38 1.0 4.7553e-02 1.2 2.35e+07 1.1 2.3e+02 5.4e+03 0.0e+00 0 10 10 7 0 0 10 10 7 0 1360 -MatAssemblyBegin 47 1.0 2.5246e-01 5.8 0.00e+00 0.0 1.1e+02 5.2e+04 2.4e+01 2 0 5 30 5 2 0 5 30 5 0 -MatAssemblyEnd 47 1.0 8.3233e-02 1.0 1.15e+05 2.5 1.8e+02 4.8e+02 9.5e+01 1 0 8 0 20 1 0 8 0 21 3 -MatGetRowIJ 1 0.0 6.0630e-05 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatCreateSubMat 2 1.0 1.0941e-02 1.0 0.00e+00 0.0 1.4e+01 2.9e+04 3.0e+01 0 0 1 2 6 0 0 1 2 7 0 -MatGetOrdering 1 0.0 1.8043e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatCoarsen 2 1.0 3.2722e-03 1.0 0.00e+00 0.0 1.1e+02 7.4e+02 3.6e+01 0 0 5 0 8 0 0 5 0 8 0 -MatZeroEntries 2 1.0 3.7056e-04 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatView 6 1.5 6.4311e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 -MatAXPY 4 1.0 1.9220e-02 1.0 1.19e+05 1.0 2.4e+01 4.0e+02 1.4e+01 0 0 1 0 3 0 0 1 0 3 18 -MatTranspose 9 1.0 1.3780e-02 1.1 0.00e+00 0.0 1.0e+02 1.8e+03 2.7e+01 0 0 5 1 6 0 0 5 1 6 0 -MatMatMultSym 6 1.0 8.6148e-02 1.2 0.00e+00 0.0 6.0e+01 1.0e+04 2.0e+01 1 0 3 3 4 1 0 3 3 4 0 -MatMatMultNum 2 1.0 1.9854e-02 1.0 7.41e+06 1.1 1.2e+01 3.2e+04 2.0e+00 0 3 1 2 0 0 3 1 2 0 1029 -MatPtAPSymbolic 2 1.0 2.4845e-01 1.0 0.00e+00 0.0 7.2e+01 5.0e+04 1.4e+01 3 0 3 19 3 3 0 3 19 3 0 -MatPtAPNumeric 2 1.0 5.0729e-01 1.0 6.93e+07 1.3 4.8e+01 6.3e+04 1.2e+01 6 28 2 16 3 6 28 2 16 3 350 -MatTrnMatMultSym 1 1.0 5.3189e-02 1.0 0.00e+00 0.0 4.2e+01 3.0e+04 1.3e+01 1 0 2 7 3 1 0 2 7 3 0 -MatGetLocalMat 7 1.0 5.9134e-03 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatGetBrAoCol 6 1.0 7.9342e-03 1.2 0.00e+00 0.0 8.4e+01 4.5e+04 0.0e+00 0 0 4 20 0 0 0 4 20 0 0 -VecMDot 20 1.0 4.4507e-03 1.8 1.22e+06 1.0 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 4 0 1 0 0 4 806 -VecTDot 38 1.0 4.2782e-03 2.8 7.64e+05 1.0 0.0e+00 0.0e+00 3.8e+01 0 0 0 0 8 0 0 0 0 8 533 -VecNorm 41 1.0 1.2974e-02 6.3 6.26e+05 1.0 0.0e+00 0.0e+00 4.1e+01 0 0 0 0 9 0 0 0 0 9 143 -VecScale 22 1.0 1.5951e-04 1.0 1.22e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 2250 -VecCopy 118 1.0 1.4105e-03 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecSet 134 1.0 6.5557e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecAXPY 38 1.0 1.6640e-03 1.1 7.46e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1337 -VecAYPX 245 1.0 6.3566e-03 1.2 2.03e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 941 -VecAXPBYCZ 76 1.0 2.1038e-03 1.1 2.11e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 2946 -VecMAXPY 22 1.0 8.1644e-04 1.1 1.44e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 5194 -VecAssemblyBegin 61 1.0 2.5972e-03 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 6.0e+01 0 0 0 0 13 0 0 0 0 13 0 -VecAssemblyEnd 61 1.0 1.9844e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecPointwiseMult 174 1.0 6.1288e-03 1.1 9.64e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 463 -VecScatterBegin 330 1.0 8.0202e-03 1.0 0.00e+00 0.0 1.7e+03 4.5e+03 0.0e+00 0 0 74 41 0 0 0 74 41 0 0 -VecScatterEnd 330 1.0 1.9809e-02 2.7 1.24e+04 1.9 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 2 -VecNormalize 22 1.0 1.4724e-03 1.6 3.66e+05 1.0 0.0e+00 0.0e+00 2.2e+01 0 0 0 0 5 0 0 0 0 5 731 -SFSetGraph 27 1.0 3.5847e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFSetUp 27 1.0 2.1940e-03 1.1 0.00e+00 0.0 2.7e+02 4.7e+02 2.7e+01 0 0 12 1 6 0 0 12 1 6 0 -SFBcastBegin 8 1.0 5.0131e-04 1.2 0.00e+00 0.0 4.8e+01 1.3e+03 0.0e+00 0 0 2 0 0 0 0 2 0 0 0 -SFBcastEnd 8 1.0 9.3665e-05 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFReduceBegin 3 1.0 1.2286e-04 1.9 0.00e+00 0.0 1.5e+01 6.4e+02 0.0e+00 0 0 1 0 0 0 0 1 0 0 0 -SFReduceEnd 3 1.0 8.4402e-05 2.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFPack 341 1.0 2.3522e-03 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFUnpack 341 1.0 6.3700e-04 1.1 1.24e+04 1.9 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 48 -KSPSetUp 7 1.0 4.9287e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -KSPSolve 1 1.0 3.2723e-01 1.0 1.35e+08 1.1 1.3e+03 4.7e+03 7.6e+01 4 61 57 34 16 4 61 57 34 17 1179 -KSPGMRESOrthog 20 1.0 5.2788e-03 1.5 2.44e+06 1.0 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 4 0 1 0 0 4 1360 -PCSetUp_GAMG+ 1 1.0 1.0014e+00 1.0 9.29e+07 1.2 9.3e+02 1.2e+04 3.3e+02 11 38 40 60 69 11 38 40 60 72 243 - PCGAMGCreateG 2 1.0 4.4639e-02 1.0 1.57e+05 1.1 1.4e+02 1.6e+03 5.0e+01 0 0 6 1 11 0 0 6 1 11 10 - GAMG Coarsen 4 1.0 5.9848e-02 1.0 0.00e+00 0.0 1.8e+02 8.0e+03 5.3e+01 1 0 8 8 11 1 0 8 8 12 0 - GAMG MIS/Agg 2 1.0 5.6681e-02 1.0 0.00e+00 0.0 1.5e+02 8.7e+03 4.9e+01 1 0 7 7 10 1 0 7 7 11 0 - PCGAMGProl 2 1.0 2.4404e-02 1.0 0.00e+00 0.0 2.6e+02 3.1e+03 7.6e+01 0 0 11 4 16 0 0 11 4 17 0 - GAMG Prol-col 2 1.0 1.0490e-02 1.0 0.00e+00 0.0 2.2e+02 2.5e+03 5.6e+01 0 0 10 3 12 0 0 10 3 12 0 - GAMG Prol-lift 2 1.0 1.3256e-02 1.0 0.00e+00 0.0 3.6e+01 6.3e+03 1.2e+01 0 0 2 1 3 0 0 2 1 3 0 - PCGAMGOptProl 2 1.0 1.0513e-01 1.0 2.34e+07 1.1 1.9e+02 8.6e+03 6.6e+01 1 10 8 9 14 1 10 8 9 14 620 - GAMG smooth 2 1.0 7.0129e-02 1.0 7.99e+06 1.1 7.2e+01 1.4e+04 2.4e+01 1 3 3 5 5 1 3 3 5 5 315 - PCGAMGCreateL 2 1.0 7.6573e-01 1.0 6.93e+07 1.3 1.5e+02 4.7e+04 8.1e+01 9 28 6 38 17 9 28 6 38 18 232 - GAMG PtAP 2 1.0 7.5342e-01 1.0 6.93e+07 1.3 1.2e+02 5.5e+04 2.6e+01 8 28 5 35 5 8 28 5 35 6 236 - GAMG Reduce 1 1.0 1.2332e-02 1.0 0.00e+00 0.0 2.9e+01 1.5e+04 5.5e+01 0 0 1 2 12 0 0 1 2 12 0 -PCGAMG Squ l00 1 1.0 5.3194e-02 1.0 0.00e+00 0.0 4.2e+01 3.0e+04 1.3e+01 1 0 2 7 3 1 0 2 7 3 0 -PCGAMG Gal l00 1 1.0 5.3749e-01 1.0 4.12e+07 1.1 6.0e+01 7.7e+04 1.3e+01 6 19 3 25 3 6 19 3 25 3 219 -PCGAMG Opt l00 1 1.0 4.2276e-02 1.0 5.09e+06 1.0 3.6e+01 2.1e+04 1.1e+01 0 2 2 4 2 0 2 2 4 2 355 -PCGAMG Gal l01 1 1.0 2.1633e-01 1.0 2.81e+07 1.8 6.0e+01 3.3e+04 1.3e+01 2 9 3 11 3 2 9 3 11 3 277 -PCGAMG Opt l01 1 1.0 1.5950e-02 1.0 2.32e+06 1.5 3.6e+01 6.6e+03 1.1e+01 0 1 2 1 2 0 1 2 1 2 339 -PCSetUp 2 1.0 1.0119e+00 1.0 9.29e+07 1.2 9.3e+02 1.2e+04 3.3e+02 11 39 40 60 69 11 39 40 60 72 247 -PCSetUpOnBlocks 19 1.0 1.0657e-02 38.7 7.02e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 659 -PCApply 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8.9435e-03 1.0 2.25e+07 1.1 2.3e+02 5.5e+03 0.0e+00 0 10 10 6 0 0 10 10 6 0 7250 +MatAssemblyBegin 47 1.0 5.0245e-02 2.6 0.00e+00 0.0 1.1e+02 5.5e+04 2.4e+01 1 0 5 30 5 1 0 5 30 5 0 +MatAssemblyEnd 47 1.0 3.3271e-02 1.0 1.11e+05 2.1 1.8e+02 4.9e+02 9.5e+01 1 0 8 0 20 1 0 8 0 21 7 +MatGetRowIJ 1 0.0 6.2730e-05 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +MatCreateSubMat 2 1.0 4.9773e-03 1.0 0.00e+00 0.0 1.4e+01 3.3e+04 3.0e+01 0 0 1 2 6 0 0 1 2 7 0 +MatGetOrdering 1 0.0 1.3808e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +MatCoarsen 2 1.0 1.1007e-03 1.0 0.00e+00 0.0 1.2e+02 8.1e+02 3.8e+01 0 0 5 1 8 0 0 5 1 8 0 +MatZeroEntries 2 1.0 2.4710e-04 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +MatView 6 1.5 2.9988e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 +MatAXPY 4 1.0 6.6076e-03 1.0 1.16e+05 1.0 2.4e+01 4.1e+02 1.4e+01 0 0 1 0 3 0 0 1 0 3 53 +MatTranspose 9 1.0 7.4341e-03 1.1 0.00e+00 0.0 1.0e+02 1.9e+03 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281 +KSPSetUp 7 1.0 1.7192e-04 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +KSPSolve 1 1.0 7.1891e-02 1.0 1.37e+08 1.1 1.3e+03 4.8e+03 7.6e+01 1 61 57 33 16 1 61 57 33 17 5451 +KSPGMRESOrthog 20 1.0 1.3502e-03 1.2 2.42e+06 1.0 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 4 0 1 0 0 4 5322 +PCSetUp_GAMG+ 1 1.0 4.0238e-01 1.0 8.91e+07 1.2 9.4e+02 1.2e+04 3.3e+02 7 38 40 61 69 7 38 40 61 72 617 + PCGAMGCreateG 2 1.0 1.5601e-02 1.0 1.53e+05 1.0 1.4e+02 1.6e+03 5.0e+01 0 0 6 1 10 0 0 6 1 11 29 + GAMG Coarsen 4 1.0 2.5276e-02 1.0 0.00e+00 0.0 2.0e+02 7.8e+03 5.5e+01 0 0 8 8 12 0 0 8 8 12 0 + GAMG MIS/Agg 2 1.0 2.3651e-02 1.0 0.00e+00 0.0 1.6e+02 8.4e+03 5.1e+01 0 0 7 7 11 0 0 7 7 11 0 + PCGAMGProl 2 1.0 9.4248e-03 1.0 0.00e+00 0.0 2.6e+02 3.1e+03 7.6e+01 0 0 11 4 16 0 0 11 4 17 0 + GAMG Prol-col 2 1.0 3.7916e-03 1.0 0.00e+00 0.0 2.2e+02 2.6e+03 5.6e+01 0 0 10 3 12 0 0 10 3 12 0 + GAMG Prol-lift 2 1.0 5.2996e-03 1.0 0.00e+00 0.0 3.6e+01 6.3e+03 1.2e+01 0 0 2 1 3 0 0 2 1 3 0 + PCGAMGOptProl 2 1.0 3.8030e-02 1.0 2.25e+07 1.1 1.9e+02 8.8e+03 6.6e+01 1 10 8 9 14 1 10 8 9 14 1717 + GAMG smooth 2 1.0 2.9675e-02 1.0 7.67e+06 1.1 7.2e+01 1.4e+04 2.4e+01 1 3 3 5 5 1 3 3 5 5 747 + PCGAMGCreateL 2 1.0 3.1356e-01 1.0 6.65e+07 1.2 1.5e+02 5.0e+04 8.1e+01 6 28 6 39 17 6 28 6 39 18 582 + GAMG PtAP 2 1.0 3.0798e-01 1.0 6.65e+07 1.2 1.2e+02 5.8e+04 2.6e+01 6 28 5 36 5 6 28 5 36 6 593 + GAMG Reduce 1 1.0 5.6816e-03 1.0 0.00e+00 0.0 2.9e+01 1.7e+04 5.5e+01 0 0 1 3 12 0 0 1 3 12 0 +PCGAMG Squ l00 1 1.0 2.2455e-02 1.0 0.00e+00 0.0 4.2e+01 3.1e+04 1.3e+01 0 0 2 7 3 0 0 2 7 3 0 +PCGAMG Gal l00 1 1.0 1.9623e-01 1.0 3.99e+07 1.0 6.0e+01 7.8e+04 1.3e+01 4 18 3 24 3 4 18 3 24 3 603 +PCGAMG Opt l00 1 1.0 1.9615e-02 1.0 5.05e+06 1.0 3.6e+01 2.2e+04 1.1e+01 0 2 2 4 2 0 2 2 4 2 766 +PCGAMG Gal l01 1 1.0 1.1185e-01 1.0 2.72e+07 1.7 6.0e+01 3.8e+04 1.3e+01 2 10 3 12 3 2 10 3 12 3 576 +PCGAMG Opt l01 1 1.0 6.2965e-03 1.0 2.15e+06 1.4 3.6e+01 6.6e+03 1.1e+01 0 1 2 1 2 0 1 2 1 2 867 +PCSetUp 2 1.0 4.1046e-01 1.0 8.91e+07 1.1 9.4e+02 1.2e+04 3.3e+02 8 40 40 61 69 8 40 40 61 72 632 +PCSetUpOnBlocks 19 1.0 8.0964e-03 92.9 1.12e+07 0.0 0.0e+00 0.0e+00 0.0e+00 0 2 0 0 0 0 2 0 0 0 1379 +PCApply 19 1.0 6.4200e-02 1.0 1.20e+08 1.1 1.2e+03 4.5e+03 1.9e+01 1 53 52 29 4 1 53 52 29 4 5308 ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. @@ -2241,9 +2277,9 @@ Discrete System 4 4 Weak Form 4 4 ======================================================================================================================== -Average time to get PetscTime(): 5.61e-07 -Average time for MPI_Barrier(): 5.8312e-06 -Average time for zero size MPI_Send(): 4.126e-06 +Average time to get PetscTime(): 6.02e-08 +Average time for MPI_Barrier(): 2.679e-06 +Average time for zero size MPI_Send(): 2.406e-06 #PETSc Option Table entries: --ndofs 10000 # (source: command line) --problem_type elasticity # (source: command line) @@ -2307,67 +2343,67 @@ Option left: name:--scaling_type value: weak source: command line Option left: name:-mg_levels_esteig_ksp_type value: cg source: command line ==== elasticity strong scaling (3 processes with ndofs=30000) ==== -[2024-11-11 02:14:46.744] [RANK: 0] [info] Using partitioner with 69312 cell data -[2024-11-11 02:14:46.745] [RANK: 0] [info] Compute partition of cells across ranks -[2024-11-11 02:14:46.745] [RANK: 0] [info] Building mesh dual graph -[2024-11-11 02:14:46.745] [RANK: 0] [info] Build local part of mesh dual graph (mixed) -[2024-11-11 02:14:46.787] [RANK: 0] [info] Build nonlocal part of mesh dual graph -[2024-11-11 02:14:46.819] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-11 02:14:46.819] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-11 02:14:46.819] [RANK: 0] [info] Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.6666666666666666, 0.6666666666666666 -[2024-11-11 02:14:46.821] [RANK: 0] [info] Graph edges (local: 66332, non-local: 962) -[2024-11-11 02:14:46.821] [RANK: 0] [info] Compute graph partition using PT-SCOTCH -[2024-11-11 02:14:53.147] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 -[2024-11-11 02:14:53.170] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 -[2024-11-11 02:14:53.256] [RANK: 0] [info] Extract basic topology: 69836->69836 -[2024-11-11 02:14:53.256] [RANK: 0] [info] Build local dual graph -[2024-11-11 02:14:53.256] [RANK: 0] [info] Build local part of mesh dual graph (mixed) -[2024-11-11 02:14:53.358] [RANK: 0] [info] GPS pseudo-diameter:(120) 16237-618 -[2024-11-11 02:14:53.371] [RANK: 0] [info] Create topology (single cell type) -[2024-11-11 02:14:53.371] [RANK: 0] [info] Create topology (generalised) -[2024-11-11 02:14:53.374] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 -[2024-11-11 02:14:53.402] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 -[2024-11-11 02:14:53.482] [RANK: 0] [info] Compute ghost indices -[2024-11-11 02:14:53.482] [RANK: 0] [info] Computing communication graph edges (using PCX algorithm). Number of input edges: 0 -[2024-11-11 02:14:53.482] [RANK: 0] [info] Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 -[2024-11-11 02:14:53.516] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 -[2024-11-11 02:14:53.530] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 -[2024-11-11 02:14:53.611] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-11 02:14:53.611] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-11 02:14:53.611] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-11 02:14:53.611] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-11 02:14:53.614] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 -[2024-11-11 02:14:53.614] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 -[2024-11-11 02:14:53.614] [RANK: 0] [info] Number of neighbourhood source ranks in distribute_to_postoffice: 0 -[2024-11-11 02:14:53.615] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-11 02:14:53.615] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-11 02:14:53.615] [RANK: 0] [info] Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.6666666666666666 -[2024-11-11 02:14:53.615] [RANK: 0] [info] Checking required entities per dimension -[2024-11-11 02:14:53.615] [RANK: 0] [info] Cell type: 0 dofmap: 17459x4 -[2024-11-11 02:14:53.621] [RANK: 0] [info] Global index computation -[2024-11-11 02:14:53.621] [RANK: 0] [info] Got 1 index_maps -[2024-11-11 02:14:53.622] [RANK: 0] [info] Get global indices -[2024-11-11 02:14:53.626] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-11 02:14:53.626] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2025-12-15 10:40:13.186] [RANK: 0] [info] Using partitioner with 69312 cell data +[2025-12-15 10:40:13.186] [RANK: 0] [info] Compute partition of cells across ranks +[2025-12-15 10:40:13.186] [RANK: 0] [info] Building mesh dual graph +[2025-12-15 10:40:13.186] [RANK: 0] [info] Build local part of mesh dual graph (mixed) +[2025-12-15 10:40:13.215] [RANK: 0] [info] Build nonlocal part of mesh dual graph +[2025-12-15 10:40:13.215] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2025-12-15 10:40:13.215] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2025-12-15 10:40:13.215] [RANK: 0] [info] Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.6666666666666666, 0.6666666666666666 +[2025-12-15 10:40:13.216] [RANK: 0] [info] Graph edges (local: 66332, non-local: 962) +[2025-12-15 10:40:13.216] [RANK: 0] [info] Compute graph partition using PT-SCOTCH +[2025-12-15 10:40:17.865] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 +[2025-12-15 10:40:17.866] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 +[2025-12-15 10:40:17.868] [RANK: 0] [info] Extract basic topology: 69288->69288 +[2025-12-15 10:40:17.868] [RANK: 0] [info] Build local dual graph +[2025-12-15 10:40:17.868] [RANK: 0] [info] Build local part of mesh dual graph (mixed) +[2025-12-15 10:40:17.885] [RANK: 0] [info] GPS pseudo-diameter:(119) 588-16136 +[2025-12-15 10:40:17.887] [RANK: 0] [info] Create topology (single cell type) +[2025-12-15 10:40:17.887] [RANK: 0] [info] Create topology (generalised) +[2025-12-15 10:40:17.903] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 +[2025-12-15 10:40:17.903] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 +[2025-12-15 10:40:17.909] [RANK: 0] [info] Compute ghost indices +[2025-12-15 10:40:17.909] [RANK: 0] [info] Computing communication graph edges (using PCX algorithm). Number of input edges: 0 +[2025-12-15 10:40:17.909] [RANK: 0] [info] Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 +[2025-12-15 10:40:17.911] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 +[2025-12-15 10:40:17.912] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 +[2025-12-15 10:40:17.917] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2025-12-15 10:40:17.919] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2025-12-15 10:40:17.919] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2025-12-15 10:40:17.919] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2025-12-15 10:40:17.922] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 +[2025-12-15 10:40:17.922] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 +[2025-12-15 10:40:17.922] [RANK: 0] [info] Number of neighbourhood source ranks in distribute_to_postoffice: 0 +[2025-12-15 10:40:17.922] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2025-12-15 10:40:17.922] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2025-12-15 10:40:17.922] [RANK: 0] [info] Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.6666666666666666 +[2025-12-15 10:40:17.922] [RANK: 0] [info] Checking required entities per dimension +[2025-12-15 10:40:17.922] [RANK: 0] [info] Cell type: 0 dofmap: 17322x4 +[2025-12-15 10:40:17.925] [RANK: 0] [info] Global index computation +[2025-12-15 10:40:17.925] [RANK: 0] [info] Got 1 index_maps +[2025-12-15 10:40:17.925] [RANK: 0] [info] Get global indices +[2025-12-15 10:40:17.928] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2025-12-15 10:40:17.928] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 UnitCube (24x19x19) to be refined 0 times -[2024-11-11 02:14:53.628] [RANK: 0] [info] Computing mesh entities of dimension 2 -[2024-11-11 02:14:53.664] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-11 02:14:53.683] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-11 02:14:53.766] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-11 02:14:53.766] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-11 02:14:53.768] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) -[2024-11-11 02:14:53.768] [RANK: 0] [info] Computing mesh connectivity 2-3 from transpose. -[2024-11-11 02:14:53.769] [RANK: 0] [info] Checking required entities per dimension -[2024-11-11 02:14:53.769] [RANK: 0] [info] Cell type: 0 dofmap: 17459x4 -[2024-11-11 02:14:53.775] [RANK: 0] [info] Global index computation -[2024-11-11 02:14:53.775] [RANK: 0] [info] Got 1 index_maps -[2024-11-11 02:14:53.776] [RANK: 0] [info] Get global indices -[2024-11-11 02:14:53.784] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-11 02:14:53.784] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-11 02:14:53.784] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) -[2024-11-11 02:14:53.785] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) -[2024-11-11 02:14:53.785] [RANK: 0] [info] Requesting connectivity (2, 0) - (0, 0) -[2024-11-11 02:14:53.837] [RANK: 0] [info] Column ghost size increased from 218 to 564 +[2025-12-15 10:40:17.929] [RANK: 0] [info] Computing mesh entities of dimension 2 +[2025-12-15 10:40:17.945] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2025-12-15 10:40:17.960] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2025-12-15 10:40:18.001] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2025-12-15 10:40:18.001] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2025-12-15 10:40:18.002] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) +[2025-12-15 10:40:18.002] [RANK: 0] [info] Computing mesh connectivity 2-3 from transpose. +[2025-12-15 10:40:18.002] [RANK: 0] [info] Checking required entities per dimension +[2025-12-15 10:40:18.002] [RANK: 0] [info] Cell type: 0 dofmap: 17322x4 +[2025-12-15 10:40:18.005] [RANK: 0] [info] Global index computation +[2025-12-15 10:40:18.005] [RANK: 0] [info] Got 1 index_maps +[2025-12-15 10:40:18.005] [RANK: 0] [info] Get global indices +[2025-12-15 10:40:18.008] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2025-12-15 10:40:18.008] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2025-12-15 10:40:18.009] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) +[2025-12-15 10:40:18.009] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) +[2025-12-15 10:40:18.009] [RANK: 0] [info] Requesting connectivity (2, 0) - (0, 0) +[2025-12-15 10:40:18.032] [RANK: 0] [info] Column ghost size increased from 209 to 535 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.9.0 @@ -2381,7 +2417,7 @@ Total degrees of freedom: 30000 (30 thousand) Average degrees of freedom per process: 10000 ---------------------------------------------------------------- -[2024-11-11 02:14:54.184] [RANK: 0] [info] PETSc Krylov solver starting to solve system. +[2025-12-15 10:40:18.225] [RANK: 0] [info] PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero @@ -2400,7 +2436,7 @@ Number of levels of aggressive coarsening 1 Square graph aggressive coarsening Number smoothing steps 1 - Complexity: grid = 1.0942 operator = 1.37921 + Complexity: grid = 1.096 operator = 1.39989 Coarse grid solver -- level 0 ------------------------------- KSP Object: (mg_coarse_) 3 MPI processes type: preonly @@ -2425,34 +2461,34 @@ tolerance for zero pivot 2.22045e-14 using diagonal shift on blocks to prevent zero pivot [INBLOCKS] matrix ordering: nd - factor fill ratio given 5., needed 1.14991 + factor fill ratio given 5., needed 1.10287 Factored matrix follows: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij rows=228, cols=228, bs=6 package used to perform factorization: petsc - total: nonzeros=46944, allocated nonzeros=46944 - using I-node routines: found 63 nodes, limit used is 5 + total: nonzeros=47088, allocated nonzeros=47088 + using I-node routines: found 62 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij rows=228, cols=228, bs=6 - total: nonzeros=40824, allocated nonzeros=40824 + total: nonzeros=42696, allocated nonzeros=42696 total number of mallocs used during MatSetValues calls=0 using I-node routines: found 74 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=228, cols=228, bs=6 - total: nonzeros=40824, allocated nonzeros=40824 + total: nonzeros=42696, allocated nonzeros=42696 total number of mallocs used during MatSetValues calls=0 using I-node (on process 0) routines: found 74 nodes, limit used is 5 Down solver (pre-smoother) on level 1 ------------------------------- KSP Object: (mg_levels_1_) 3 MPI processes type: chebyshev Chebyshev polynomial of first kind - eigenvalue targets used: min 0.26573, max 2.92303 - eigenvalues provided (min 0.0499828, max 2.6573) with transform: [0. 0.1; 0. 1.1] + eigenvalue targets used: min 0.262964, max 2.89261 + eigenvalues provided (min 0.0560281, max 2.62964) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning @@ -2463,18 +2499,18 @@ linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij - rows=2598, cols=2598, bs=6 - total: nonzeros=433764, allocated nonzeros=433764 + rows=2652, cols=2652, bs=6 + total: nonzeros=457776, allocated nonzeros=457776 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation - using I-node (on process 0) routines: found 258 nodes, limit used is 5 + using I-node (on process 0) routines: found 278 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) Down solver (pre-smoother) on level 2 ------------------------------- KSP Object: (mg_levels_2_) 3 MPI processes type: chebyshev Chebyshev polynomial of first kind - eigenvalue targets used: min 0.258255, max 2.84081 - eigenvalues provided (min 0.073205, max 2.58255) with transform: [0. 0.1; 0. 1.1] + eigenvalue targets used: min 0.258528, max 2.84381 + eigenvalues provided (min 0.070299, max 2.58528) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning @@ -2489,7 +2525,7 @@ total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space - using I-node (on process 0) routines: found 3403 nodes, limit used is 5 + using I-node (on process 0) routines: found 3394 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) linear system matrix = precond matrix: Mat Object: 3 MPI processes @@ -2498,46 +2534,46 @@ total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space - using I-node (on process 0) routines: found 3403 nodes, limit used is 5 + using I-node (on process 0) routines: found 3394 nodes, limit used is 5 [MPI_MAX] Summary of timings | reps wall avg wall tot ------------------------------------------------------------------------------------------------------- -Build BoxMesh (tetrahedra) | 1 6.890000 6.890000 -Build dofmap data | 2 0.015000 0.030000 -Build sparsity | 1 0.020000 0.020000 +Build BoxMesh (tetrahedra) | 1 4.750000 4.750000 +Build dofmap data | 2 0.005000 0.010000 +Build sparsity | 1 0.000000 0.000000 Compute connectivity 2-0 | 1 0.000000 0.000000 Compute dof reordering map | 2 0.005000 0.010000 -Compute entities of dim = 2 | 1 0.140000 0.140000 -Compute graph partition (SCOTCH) | 1 6.330000 6.330000 -Compute local part of mesh dual graph (mixed) | 2 0.080000 0.160000 -Compute local-to-local map | 1 0.000000 0.000000 -Compute non-local part of mesh dual graph | 1 0.030000 0.030000 +Compute entities of dim = 2 | 1 0.070000 0.070000 +Compute graph partition (SCOTCH) | 1 4.640000 4.640000 +Compute local part of mesh dual graph (mixed) | 2 0.030000 0.060000 +Compute local-to-local map | 1 0.010000 0.010000 +Compute non-local part of mesh dual graph | 1 0.010000 0.010000 Compute-local-to-global links for global/local adjacency list | 1 0.000000 0.000000 -Distribute fixed-degree adjacency list to destination ranks | 1 0.130000 0.130000 +Distribute fixed-degree adjacency list to destination ranks | 1 0.020000 0.020000 Distribute row-wise data (scalable) | 1 0.000000 0.000000 -GPS: create_level_structure | 2 0.000000 0.000000 +GPS: create_level_structure | 2 0.002000 0.010000 Gibbs-Poole-Stockmeyer ordering | 1 0.010000 0.010000 -Init MPI | 1 0.120000 0.120000 +Init MPI | 1 0.020000 0.020000 Init PETSc | 1 0.000000 0.000000 -Init dofmap from element dofmap | 2 0.015000 0.030000 +Init dofmap from element dofmap | 2 0.000000 0.000000 Init logging | 1 0.000000 0.000000 -PETSc Krylov solver | 1 1.100000 1.100000 -SCOTCH: call SCOTCH_dgraphBuild | 1 0.020000 0.020000 -SCOTCH: call SCOTCH_dgraphPart | 1 6.310000 6.310000 -SparsityPattern::finalize | 1 0.010000 0.010000 -Topology: create | 1 0.260000 0.260000 -Topology: determine shared index ownership | 1 0.130000 0.130000 +PETSc Krylov solver | 1 0.480000 0.480000 +SCOTCH: call SCOTCH_dgraphBuild | 1 0.010000 0.010000 +SCOTCH: call SCOTCH_dgraphPart | 1 4.640000 4.640000 +SparsityPattern::finalize | 1 0.020000 0.020000 +Topology: create | 1 0.040000 0.040000 +Topology: determine shared index ownership | 1 0.010000 0.010000 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.010000 0.010000 -ZZZ Assemble matrix | 1 0.300000 0.300000 -ZZZ Assemble vector | 1 0.020000 0.020000 -ZZZ Create Mesh | 1 6.890000 6.890000 -ZZZ Create RHS function | 1 0.030000 0.030000 +ZZZ Assemble matrix | 1 0.160000 0.160000 +ZZZ Assemble vector | 1 0.010000 0.010000 +ZZZ Create Mesh | 1 4.750000 4.750000 +ZZZ Create RHS function | 1 0.010000 0.010000 ZZZ Create boundary conditions | 1 0.000000 0.000000 -ZZZ Create facets and facet->cell connectivity | 1 0.140000 0.140000 +ZZZ Create facets and facet->cell connectivity | 1 0.070000 0.070000 ZZZ Create forms | 1 0.000000 0.000000 -ZZZ Create near-nullspace | 1 0.020000 0.020000 -ZZZ FunctionSpace | 1 0.020000 0.020000 -ZZZ Solve | 1 1.100000 1.100000 +ZZZ Create near-nullspace | 1 0.010000 0.010000 +ZZZ FunctionSpace | 1 0.010000 0.010000 +ZZZ Solve | 1 0.480000 0.480000 *** Number of Krylov iterations: 18 *** Solution norm: 3.6795e-05 **************************************************************************************************************************************************************** @@ -2546,17 +2582,17 @@ ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ -/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-i686-linux-gnu/dolfinx-scaling-test on a named ionos2-i386 with 3 processes, by pbuilder1 on Mon Nov 11 02:14:55 2024 +/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-i686-linux-gnu/dolfinx-scaling-test on a named i-capture-the-hostname with 3 processes, by pbuilder2 on Mon Dec 15 10:40:18 2025 Using Petsc Release Version 3.21.6, Sep 28, 2024 Max Max/Min Avg Total -Time (sec): 8.548e+00 1.000 8.548e+00 +Time (sec): 5.520e+00 1.000 5.520e+00 Objects: 0.000e+00 0.000 0.000e+00 -Flops: 2.198e+08 1.115 2.072e+08 6.216e+08 -Flops/sec: 2.572e+07 1.115 2.424e+07 7.272e+07 -MPI Msg Count: 7.980e+02 1.040 7.777e+02 2.333e+03 -MPI Msg Len (bytes): 7.425e+06 1.461 7.899e+03 1.843e+07 -MPI Reductions: 4.770e+02 1.000 +Flops: 2.173e+08 1.036 2.129e+08 6.388e+08 +Flops/sec: 3.937e+07 1.036 3.858e+07 1.157e+08 +MPI Msg Count: 7.940e+02 1.040 7.743e+02 2.323e+03 +MPI Msg Len (bytes): 7.378e+06 1.413 8.285e+03 1.924e+07 +MPI Reductions: 4.760e+02 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops @@ -2564,7 +2600,7 @@ Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total - 0: Main Stage: 8.5476e+00 100.0% 6.2160e+08 100.0% 2.333e+03 100.0% 7.899e+03 100.0% 4.590e+02 96.2% + 0: Main Stage: 5.5197e+00 100.0% 6.3882e+08 100.0% 2.323e+03 100.0% 8.285e+03 100.0% 4.580e+02 96.2% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. @@ -2588,80 +2624,80 @@ --- Event Stage 0: Main Stage -BuildTwoSided 111 1.0 1.1263e-01 4.8 0.00e+00 0.0 1.9e+02 4.0e+00 1.1e+02 1 0 8 0 23 1 0 8 0 24 0 -BuildTwoSidedF 84 1.0 1.1223e-01 4.9 0.00e+00 0.0 1.1e+02 4.7e+04 8.4e+01 1 0 5 29 18 1 0 5 29 18 0 -MatMult 190 1.0 2.1841e-01 1.1 1.18e+08 1.1 1.1e+03 5.7e+03 0.0e+00 2 53 49 35 0 2 53 49 35 0 1518 -MatMultAdd 38 1.0 2.0976e-02 1.2 9.65e+06 1.1 1.5e+02 1.6e+03 0.0e+00 0 4 7 1 0 0 4 7 1 0 1314 -MatMultTranspose 38 1.0 3.4275e-02 1.4 9.65e+06 1.1 1.5e+02 1.6e+03 0.0e+00 0 4 7 1 0 0 4 7 1 0 805 -MatSolve 19 0.0 2.4045e-03 0.0 1.78e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 740 -MatLUFactorSym 1 1.0 2.6267e-03 124.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatLUFactorNum 1 1.0 6.5060e-03 1578.4 6.08e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 935 -MatScale 6 1.0 1.6015e-03 1.1 6.12e+05 1.1 1.2e+01 1.6e+03 0.0e+00 0 0 1 0 0 0 0 1 0 0 1094 -MatResidual 38 1.0 4.0307e-02 1.1 2.30e+07 1.1 2.3e+02 5.4e+03 0.0e+00 0 10 10 7 0 0 10 10 7 0 1589 -MatAssemblyBegin 47 1.0 1.3727e-01 2.8 0.00e+00 0.0 1.1e+02 4.7e+04 2.4e+01 1 0 5 29 5 1 0 5 29 5 0 -MatAssemblyEnd 47 1.0 7.9826e-02 1.0 8.53e+04 2.1 1.8e+02 4.8e+02 9.5e+01 1 0 8 0 20 1 0 8 0 21 3 -MatGetRowIJ 1 0.0 5.7895e-05 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatCreateSubMat 2 1.0 9.9794e-03 1.0 0.00e+00 0.0 1.4e+01 2.8e+04 3.0e+01 0 0 1 2 6 0 0 1 2 7 0 -MatGetOrdering 1 0.0 1.7822e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatCoarsen 2 1.0 2.3744e-03 1.0 0.00e+00 0.0 1.2e+02 8.0e+02 3.8e+01 0 0 5 1 8 0 0 5 1 8 0 -MatZeroEntries 2 1.0 3.9975e-04 1.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatView 6 1.5 6.8371e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 -MatAXPY 4 1.0 1.8918e-02 1.0 1.20e+05 1.1 2.4e+01 4.0e+02 1.4e+01 0 0 1 0 3 0 0 1 0 3 18 -MatTranspose 9 1.0 1.2633e-02 1.1 0.00e+00 0.0 1.0e+02 1.9e+03 2.7e+01 0 0 5 1 6 0 0 5 1 6 0 -MatMatMultSym 6 1.0 7.9399e-02 1.1 0.00e+00 0.0 6.0e+01 1.0e+04 2.0e+01 1 0 3 3 4 1 0 3 3 4 0 -MatMatMultNum 2 1.0 2.0317e-02 1.0 7.25e+06 1.1 1.2e+01 3.3e+04 2.0e+00 0 3 1 2 0 0 3 1 2 0 995 -MatPtAPSymbolic 2 1.0 2.2324e-01 1.0 0.00e+00 0.0 7.2e+01 4.7e+04 1.4e+01 3 0 3 18 3 3 0 3 18 3 0 -MatPtAPNumeric 2 1.0 3.6083e-01 1.0 6.22e+07 1.2 4.8e+01 5.9e+04 1.2e+01 4 27 2 15 3 4 27 2 15 3 469 -MatTrnMatMultSym 1 1.0 5.0062e-02 1.0 0.00e+00 0.0 4.2e+01 3.1e+04 1.3e+01 1 0 2 7 3 1 0 2 7 3 0 -MatGetLocalMat 7 1.0 5.2513e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatGetBrAoCol 6 1.0 7.0259e-03 1.1 0.00e+00 0.0 8.4e+01 4.4e+04 0.0e+00 0 0 4 20 0 0 0 4 20 0 0 -VecMDot 20 1.0 4.2420e-03 1.7 1.24e+06 1.1 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 4 0 1 0 0 4 845 -VecTDot 38 1.0 2.6171e-03 1.4 7.76e+05 1.1 0.0e+00 0.0e+00 3.8e+01 0 0 0 0 8 0 0 0 0 8 871 -VecNorm 41 1.0 1.0887e-02 5.4 6.35e+05 1.1 0.0e+00 0.0e+00 4.1e+01 0 0 0 0 9 0 0 0 0 9 171 -VecScale 22 1.0 1.6909e-04 1.1 1.24e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 2121 -VecCopy 118 1.0 1.2653e-03 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecSet 134 1.0 6.1654e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecAXPY 38 1.0 1.1493e-03 1.0 7.58e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1936 -VecAYPX 245 1.0 5.1953e-03 1.1 2.06e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1150 -VecAXPBYCZ 76 1.0 1.9004e-03 1.1 2.14e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 3259 -VecMAXPY 22 1.0 7.3995e-04 1.1 1.46e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 5727 -VecAssemblyBegin 61 1.0 2.5243e-03 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 6.0e+01 0 0 0 0 13 0 0 0 0 13 0 -VecAssemblyEnd 61 1.0 1.9934e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecPointwiseMult 174 1.0 5.1939e-03 1.1 9.79e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 546 -VecScatterBegin 330 1.0 7.7986e-03 1.2 0.00e+00 0.0 1.7e+03 4.5e+03 0.0e+00 0 0 73 42 0 0 0 73 42 0 0 -VecScatterEnd 330 1.0 1.8130e-02 2.6 1.15e+04 1.3 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 2 -VecNormalize 22 1.0 1.0619e-03 1.1 3.71e+05 1.1 0.0e+00 0.0e+00 2.2e+01 0 0 0 0 5 0 0 0 0 5 1013 -SFSetGraph 27 1.0 3.7363e-04 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFSetUp 27 1.0 1.9956e-03 1.1 0.00e+00 0.0 2.7e+02 4.7e+02 2.7e+01 0 0 11 1 6 0 0 11 1 6 0 -SFBcastBegin 10 1.0 3.5231e-04 1.0 0.00e+00 0.0 6.0e+01 1.3e+03 0.0e+00 0 0 3 0 0 0 0 3 0 0 0 -SFBcastEnd 10 1.0 1.3411e-04 1.8 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFReduceBegin 3 1.0 6.9051e-05 1.1 0.00e+00 0.0 1.5e+01 6.4e+02 0.0e+00 0 0 1 0 0 0 0 1 0 0 0 -SFReduceEnd 3 1.0 2.9789e-05 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFPack 343 1.0 2.0356e-03 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFUnpack 343 1.0 6.3454e-04 1.1 1.15e+04 1.3 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 47 -KSPSetUp 7 1.0 5.7480e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -KSPSolve 1 1.0 2.7883e-01 1.0 1.32e+08 1.1 1.3e+03 4.8e+03 7.6e+01 3 61 57 34 16 3 61 57 34 17 1368 -KSPGMRESOrthog 20 1.0 5.0178e-03 1.5 2.48e+06 1.1 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 4 0 1 0 0 4 1429 -PCSetUp_GAMG+ 1 1.0 8.1936e-01 1.0 8.54e+07 1.2 9.4e+02 1.2e+04 3.3e+02 10 38 40 59 69 10 38 40 59 72 286 - PCGAMGCreateG 2 1.0 4.3151e-02 1.0 1.57e+05 1.1 1.4e+02 1.6e+03 5.0e+01 1 0 6 1 10 1 0 6 1 11 11 - GAMG Coarsen 4 1.0 5.6053e-02 1.0 0.00e+00 0.0 2.0e+02 7.8e+03 5.5e+01 1 0 8 8 12 1 0 8 8 12 0 - GAMG MIS/Agg 2 1.0 5.2629e-02 1.0 0.00e+00 0.0 1.6e+02 8.4e+03 5.1e+01 1 0 7 8 11 1 0 7 8 11 0 - PCGAMGProl 2 1.0 2.3798e-02 1.0 0.00e+00 0.0 2.6e+02 3.2e+03 7.6e+01 0 0 11 4 16 0 0 11 4 17 0 - GAMG Prol-col 2 1.0 1.0006e-02 1.0 0.00e+00 0.0 2.2e+02 2.6e+03 5.6e+01 0 0 10 3 12 0 0 10 3 12 0 - GAMG Prol-lift 2 1.0 1.3114e-02 1.0 0.00e+00 0.0 3.6e+01 7.0e+03 1.2e+01 0 0 2 1 3 0 0 2 1 3 0 - PCGAMGOptProl 2 1.0 1.0078e-01 1.0 2.30e+07 1.1 1.9e+02 8.7e+03 6.6e+01 1 10 8 9 14 1 10 8 9 14 641 - GAMG smooth 2 1.0 6.9626e-02 1.0 7.83e+06 1.1 7.2e+01 1.4e+04 2.4e+01 1 4 3 6 5 1 4 3 6 5 314 - PCGAMGCreateL 2 1.0 5.9413e-01 1.0 6.22e+07 1.2 1.5e+02 4.5e+04 8.1e+01 7 27 6 36 17 7 27 6 36 18 285 - GAMG PtAP 2 1.0 5.8295e-01 1.0 6.22e+07 1.2 1.2e+02 5.2e+04 2.6e+01 7 27 5 34 5 7 27 5 34 6 290 - GAMG Reduce 1 1.0 1.1390e-02 1.0 0.00e+00 0.0 2.9e+01 1.4e+04 5.5e+01 0 0 1 2 12 0 0 1 2 12 0 -PCGAMG Squ l00 1 1.0 5.0066e-02 1.0 0.00e+00 0.0 4.2e+01 3.1e+04 1.3e+01 1 0 2 7 3 1 0 2 7 3 0 -PCGAMG Gal l00 1 1.0 4.1412e-01 1.0 4.01e+07 1.1 6.0e+01 7.4e+04 1.3e+01 5 19 3 24 3 5 19 3 24 3 282 -PCGAMG Opt l00 1 1.0 4.4274e-02 1.0 5.10e+06 1.1 3.6e+01 2.2e+04 1.1e+01 1 2 2 4 2 1 2 2 4 2 339 -PCGAMG Gal l01 1 1.0 1.6882e-01 1.0 2.20e+07 1.7 6.0e+01 2.9e+04 1.3e+01 2 8 3 10 3 2 8 3 10 3 311 -PCGAMG Opt l01 1 1.0 1.3658e-02 1.0 2.15e+06 1.5 3.6e+01 6.6e+03 1.1e+01 0 1 2 1 2 0 1 2 1 2 381 -PCSetUp 2 1.0 8.2882e-01 1.0 8.54e+07 1.1 9.4e+02 1.2e+04 3.3e+02 10 39 40 59 69 10 39 40 59 72 290 -PCSetUpOnBlocks 19 1.0 9.5205e-03 37.2 6.08e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 639 -PCApply 19 1.0 2.4276e-01 1.0 1.15e+08 1.1 1.2e+03 4.5e+03 1.9e+01 3 53 52 30 4 3 53 52 30 4 1361 +BuildTwoSided 111 1.0 1.2168e-01 13.6 0.00e+00 0.0 1.9e+02 4.0e+00 1.1e+02 1 0 8 0 23 1 0 8 0 24 0 +BuildTwoSidedF 84 1.0 1.2110e-01 13.7 0.00e+00 0.0 1.1e+02 5.3e+04 8.4e+01 1 0 5 30 18 1 0 5 30 18 0 +MatMult 190 1.0 4.6612e-02 1.1 1.16e+08 1.1 1.1e+03 5.8e+03 0.0e+00 1 53 49 34 0 1 53 49 34 0 7202 +MatMultAdd 38 1.0 5.3465e-03 1.1 9.44e+06 1.0 1.5e+02 1.7e+03 0.0e+00 0 4 7 1 0 0 4 7 1 0 5261 +MatMultTranspose 38 1.0 8.7476e-03 1.3 9.45e+06 1.0 1.5e+02 1.7e+03 0.0e+00 0 4 7 1 0 0 4 7 1 0 3219 +MatSolve 19 0.0 1.0219e-03 0.0 1.79e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1747 +MatLUFactorSym 1 1.0 1.3276e-03 152.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +MatLUFactorNum 1 1.0 2.7685e-03 2485.2 6.25e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 2257 +MatScale 6 1.0 5.9376e-04 1.3 6.00e+05 1.0 1.2e+01 1.6e+03 0.0e+00 0 0 1 0 0 0 0 1 0 0 3005 +MatResidual 38 1.0 8.6193e-03 1.1 2.26e+07 1.1 2.3e+02 5.5e+03 0.0e+00 0 10 10 6 0 0 10 10 6 0 7536 +MatAssemblyBegin 47 1.0 1.2940e-01 4.2 0.00e+00 0.0 1.1e+02 5.3e+04 2.4e+01 1 0 5 30 5 1 0 5 30 5 0 +MatAssemblyEnd 47 1.0 4.1431e-02 1.2 9.88e+04 1.9 1.8e+02 4.9e+02 9.5e+01 1 0 8 0 20 1 0 8 0 21 6 +MatGetRowIJ 1 0.0 4.2520e-05 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +MatCreateSubMat 2 1.0 3.9313e-03 1.0 0.00e+00 0.0 1.4e+01 2.7e+04 3.0e+01 0 0 1 2 6 0 0 1 2 7 0 +MatGetOrdering 1 0.0 9.5370e-05 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +MatCoarsen 2 1.0 1.2516e-03 1.0 0.00e+00 0.0 1.2e+02 8.4e+02 3.7e+01 0 0 5 1 8 0 0 5 1 8 0 +MatZeroEntries 2 1.0 2.8902e-04 2.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +MatView 6 1.5 2.9339e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 +MatAXPY 4 1.0 1.0351e-02 1.0 1.18e+05 1.0 2.4e+01 4.0e+02 1.4e+01 0 0 1 0 3 0 0 1 0 3 34 +MatTranspose 9 1.0 8.7815e-03 1.2 0.00e+00 0.0 1.0e+02 1.9e+03 2.7e+01 0 0 5 1 6 0 0 5 1 6 0 +MatMatMultSym 6 1.0 3.9827e-02 1.1 0.00e+00 0.0 6.0e+01 1.1e+04 2.0e+01 1 0 3 3 4 1 0 3 3 4 0 +MatMatMultNum 2 1.0 8.9482e-03 1.0 7.14e+06 1.1 1.2e+01 3.3e+04 2.0e+00 0 3 1 2 0 0 3 1 2 0 2292 +MatPtAPSymbolic 2 1.0 1.4407e-01 1.0 0.00e+00 0.0 7.2e+01 5.2e+04 1.4e+01 3 0 3 20 3 3 0 3 20 3 0 +MatPtAPNumeric 2 1.0 1.4423e-01 1.0 6.22e+07 1.1 4.8e+01 6.8e+04 1.2e+01 3 28 2 17 3 3 28 2 17 3 1252 +MatTrnMatMultSym 1 1.0 3.6940e-02 1.0 0.00e+00 0.0 4.2e+01 3.0e+04 1.3e+01 1 0 2 7 3 1 0 2 7 3 0 +MatGetLocalMat 7 1.0 2.3070e-03 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +MatGetBrAoCol 6 1.0 2.6516e-03 1.1 0.00e+00 0.0 8.4e+01 4.7e+04 0.0e+00 0 0 4 21 0 0 0 4 21 0 0 +VecMDot 20 1.0 1.2417e-03 1.7 1.22e+06 1.0 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 4 0 1 0 0 4 2892 +VecTDot 38 1.0 7.0597e-04 1.3 7.74e+05 1.0 0.0e+00 0.0e+00 3.8e+01 0 0 0 0 8 0 0 0 0 8 3229 +VecNorm 41 1.0 1.9827e-03 3.6 6.29e+05 1.0 0.0e+00 0.0e+00 4.1e+01 0 0 0 0 9 0 0 0 0 9 937 +VecScale 22 1.0 6.3142e-05 1.1 1.22e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 5688 +VecCopy 118 1.0 3.4591e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +VecSet 134 1.0 1.6462e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +VecAXPY 38 1.0 3.6870e-04 1.1 7.55e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 6036 +VecAYPX 245 1.0 1.2121e-03 1.0 2.02e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 4936 +VecAXPBYCZ 76 1.0 4.9531e-04 1.1 2.10e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 12525 +VecMAXPY 22 1.0 3.3962e-04 1.1 1.44e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 12498 +VecAssemblyBegin 61 1.0 3.5741e-03 8.1 0.00e+00 0.0 0.0e+00 0.0e+00 6.0e+01 0 0 0 0 13 0 0 0 0 13 0 +VecAssemblyEnd 61 1.0 5.9599e-05 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +VecPointwiseMult 174 1.0 9.8371e-04 1.1 9.62e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 2888 +VecScatterBegin 330 1.0 1.6180e-03 1.3 0.00e+00 0.0 1.7e+03 4.6e+03 0.0e+00 0 0 74 41 0 0 0 74 41 0 0 +VecScatterEnd 330 1.0 3.1029e-03 2.6 1.28e+04 1.5 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 10 +VecNormalize 22 1.0 3.4462e-04 1.1 3.65e+05 1.0 0.0e+00 0.0e+00 2.2e+01 0 0 0 0 5 0 0 0 0 5 3126 +SFSetGraph 27 1.0 2.0793e-04 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFSetUp 27 1.0 1.1256e-03 1.3 0.00e+00 0.0 2.7e+02 4.7e+02 2.7e+01 0 0 11 1 6 0 0 11 1 6 0 +SFBcastBegin 9 1.0 1.4087e-04 1.3 0.00e+00 0.0 5.4e+01 1.5e+03 0.0e+00 0 0 2 0 0 0 0 2 0 0 0 +SFBcastEnd 9 1.0 1.4491e-04 6.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFReduceBegin 3 1.0 3.3170e-05 1.0 0.00e+00 0.0 1.5e+01 6.5e+02 0.0e+00 0 0 1 0 0 0 0 1 0 0 0 +SFReduceEnd 3 1.0 1.6222e-05 1.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFPack 342 1.0 4.5037e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFUnpack 342 1.0 9.8576e-05 1.1 1.28e+04 1.5 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 320 +KSPSetUp 7 1.0 1.5641e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +KSPSolve 1 1.0 6.6172e-02 1.0 1.32e+08 1.1 1.3e+03 4.8e+03 7.6e+01 1 60 57 33 16 1 60 57 33 17 5840 +KSPGMRESOrthog 20 1.0 1.5425e-03 1.5 2.43e+06 1.0 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 4 0 1 0 0 4 4657 +PCSetUp_GAMG+ 1 1.0 4.0976e-01 1.0 8.50e+07 1.1 9.4e+02 1.2e+04 3.3e+02 7 39 40 61 69 7 39 40 61 72 601 + PCGAMGCreateG 2 1.0 2.4745e-02 1.0 1.55e+05 1.0 1.4e+02 1.6e+03 5.0e+01 0 0 6 1 11 0 0 6 1 11 18 + GAMG Coarsen 4 1.0 4.0424e-02 1.0 0.00e+00 0.0 1.9e+02 8.0e+03 5.4e+01 1 0 8 8 11 1 0 8 8 12 0 + GAMG MIS/Agg 2 1.0 3.8275e-02 1.0 0.00e+00 0.0 1.6e+02 8.6e+03 5.0e+01 1 0 7 7 11 1 0 7 7 11 0 + PCGAMGProl 2 1.0 1.2430e-02 1.0 0.00e+00 0.0 2.6e+02 3.1e+03 7.6e+01 0 0 11 4 16 0 0 11 4 17 0 + GAMG Prol-col 2 1.0 6.0230e-03 1.0 0.00e+00 0.0 2.2e+02 2.6e+03 5.6e+01 0 0 10 3 12 0 0 10 3 12 0 + GAMG Prol-lift 2 1.0 6.0300e-03 1.0 0.00e+00 0.0 3.6e+01 6.5e+03 1.2e+01 0 0 2 1 3 0 0 2 1 3 0 + PCGAMGOptProl 2 1.0 3.9403e-02 1.0 2.26e+07 1.1 1.9e+02 8.8e+03 6.6e+01 1 10 8 9 14 1 10 8 9 14 1659 + GAMG smooth 2 1.0 3.1159e-02 1.0 7.70e+06 1.1 7.2e+01 1.4e+04 2.4e+01 1 3 3 5 5 1 3 3 5 5 712 + PCGAMGCreateL 2 1.0 2.9228e-01 1.0 6.22e+07 1.1 1.5e+02 5.0e+04 8.1e+01 5 28 6 38 17 5 28 6 38 18 618 + GAMG PtAP 2 1.0 2.8796e-01 1.0 6.22e+07 1.1 1.2e+02 5.8e+04 2.6e+01 5 28 5 36 5 5 28 5 36 6 627 + GAMG Reduce 1 1.0 4.4435e-03 1.0 0.00e+00 0.0 2.9e+01 1.4e+04 5.5e+01 0 0 1 2 12 0 0 1 2 12 0 +PCGAMG Squ l00 1 1.0 3.6942e-02 1.0 0.00e+00 0.0 4.2e+01 3.0e+04 1.3e+01 1 0 2 7 3 1 0 2 7 3 0 +PCGAMG Gal l00 1 1.0 1.9866e-01 1.0 4.02e+07 1.0 6.0e+01 8.2e+04 1.3e+01 4 19 3 26 3 4 19 3 26 3 600 +PCGAMG Opt l00 1 1.0 2.0882e-02 1.0 5.04e+06 1.0 3.6e+01 2.2e+04 1.1e+01 0 2 2 4 2 0 2 2 4 2 719 +PCGAMG Gal l01 1 1.0 8.9292e-02 1.0 2.31e+07 1.4 6.0e+01 3.4e+04 1.3e+01 2 10 3 11 3 2 10 3 11 3 688 +PCGAMG Opt l01 1 1.0 6.4070e-03 1.0 2.10e+06 1.3 3.6e+01 6.9e+03 1.1e+01 0 1 2 1 2 0 1 2 1 2 857 +PCSetUp 2 1.0 4.1401e-01 1.0 8.50e+07 1.0 9.4e+02 1.2e+04 3.3e+02 7 40 40 61 69 7 40 40 61 72 610 +PCSetUpOnBlocks 19 1.0 4.2666e-03 47.2 6.25e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1465 +PCApply 19 1.0 5.9055e-02 1.0 1.15e+08 1.1 1.2e+03 4.5e+03 1.9e+01 1 52 52 29 4 1 52 52 29 4 5678 ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. @@ -2684,9 +2720,9 @@ Discrete System 4 4 Weak Form 4 4 ======================================================================================================================== -Average time to get PetscTime(): 6.674e-07 -Average time for MPI_Barrier(): 5.0424e-06 -Average time for zero size MPI_Send(): 4.32233e-06 +Average time to get PetscTime(): 5.71e-08 +Average time for MPI_Barrier(): 2.1246e-06 +Average time for zero size MPI_Send(): 1.16233e-06 #PETSc Option Table entries: --ndofs 30000 # (source: command line) --problem_type elasticity # (source: command line) @@ -2750,69 +2786,69 @@ Option left: name:--scaling_type value: strong source: command line Option left: name:-mg_levels_esteig_ksp_type value: cg source: command line ==== poisson weak scaling (3 processes with ndofs=10000) ==== -[2024-11-11 02:14:55.538] [RANK: 0] [info] Using partitioner with 216000 cell data -[2024-11-11 02:14:55.541] [RANK: 0] [info] Compute partition of cells across ranks -[2024-11-11 02:14:55.542] [RANK: 0] [info] Building mesh dual graph -[2024-11-11 02:14:55.542] [RANK: 0] [info] Build local part of mesh dual graph (mixed) -[2024-11-11 02:14:55.719] [RANK: 0] [info] Build nonlocal part of mesh dual graph -[2024-11-11 02:14:55.719] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-11 02:14:55.720] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-11 02:14:55.720] [RANK: 0] [info] Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.6666666666666666, 0.6666666666666666 -[2024-11-11 02:14:55.726] [RANK: 0] [info] Graph edges (local: 210000, non-local: 1800) -[2024-11-11 02:14:55.726] [RANK: 0] [info] Compute graph partition using PT-SCOTCH -[2024-11-11 02:15:04.800] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 -[2024-11-11 02:15:04.822] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 -[2024-11-11 02:15:04.869] [RANK: 0] [info] Extract basic topology: 212772->212772 -[2024-11-11 02:15:04.870] [RANK: 0] [info] Build local dual graph -[2024-11-11 02:15:04.870] [RANK: 0] [info] Build local part of mesh dual graph (mixed) -[2024-11-11 02:15:05.001] [RANK: 0] [info] GPS pseudo-diameter:(167) 1294-51200 -[2024-11-11 02:15:05.015] [RANK: 0] [info] Create topology (single cell type) -[2024-11-11 02:15:05.015] [RANK: 0] [info] Create topology (generalised) -[2024-11-11 02:15:05.091] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 -[2024-11-11 02:15:05.092] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 -[2024-11-11 02:15:05.119] [RANK: 0] [info] Compute ghost indices -[2024-11-11 02:15:05.119] [RANK: 0] [info] Computing communication graph edges (using PCX algorithm). Number of input edges: 0 -[2024-11-11 02:15:05.120] [RANK: 0] [info] Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 -[2024-11-11 02:15:05.128] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 -[2024-11-11 02:15:05.131] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 -[2024-11-11 02:15:05.156] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-11 02:15:05.167] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-11 02:15:05.167] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-11 02:15:05.167] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-11 02:15:05.180] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 -[2024-11-11 02:15:05.180] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 -[2024-11-11 02:15:05.180] [RANK: 0] [info] Number of neighbourhood source ranks in distribute_to_postoffice: 0 -[2024-11-11 02:15:05.181] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-11 02:15:05.182] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-11 02:15:05.182] [RANK: 0] [info] Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.6666666666666666 -[2024-11-11 02:15:05.183] [RANK: 0] [info] Checking required entities per dimension -[2024-11-11 02:15:05.183] [RANK: 0] [info] Cell type: 0 dofmap: 53193x4 -[2024-11-11 02:15:05.201] [RANK: 0] [info] Global index computation -[2024-11-11 02:15:05.201] [RANK: 0] [info] Got 1 index_maps -[2024-11-11 02:15:05.202] [RANK: 0] [info] Get global indices -[2024-11-11 02:15:05.208] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-11 02:15:05.208] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2025-12-15 10:40:18.781] [RANK: 0] [info] Using partitioner with 216000 cell data +[2025-12-15 10:40:18.783] [RANK: 0] [info] Compute partition of cells across ranks +[2025-12-15 10:40:18.783] [RANK: 0] [info] Building mesh dual graph +[2025-12-15 10:40:18.783] [RANK: 0] [info] Build local part of mesh dual graph (mixed) +[2025-12-15 10:40:18.840] [RANK: 0] [info] Build nonlocal part of mesh dual graph +[2025-12-15 10:40:18.865] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2025-12-15 10:40:18.866] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2025-12-15 10:40:18.866] [RANK: 0] [info] Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.6666666666666666, 0.6666666666666666 +[2025-12-15 10:40:18.868] [RANK: 0] [info] Graph edges (local: 210000, non-local: 1800) +[2025-12-15 10:40:18.868] [RANK: 0] [info] Compute graph partition using PT-SCOTCH +[2025-12-15 10:40:26.797] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 +[2025-12-15 10:40:26.799] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 +[2025-12-15 10:40:26.806] [RANK: 0] [info] Extract basic topology: 212948->212948 +[2025-12-15 10:40:26.806] [RANK: 0] [info] Build local dual graph +[2025-12-15 10:40:26.806] [RANK: 0] [info] Build local part of mesh dual graph (mixed) +[2025-12-15 10:40:26.897] [RANK: 0] [info] GPS pseudo-diameter:(168) 1309-51282 +[2025-12-15 10:40:26.908] [RANK: 0] [info] Create topology (single cell type) +[2025-12-15 10:40:26.908] [RANK: 0] [info] Create topology (generalised) +[2025-12-15 10:40:26.917] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 +[2025-12-15 10:40:26.917] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 +[2025-12-15 10:40:26.937] [RANK: 0] [info] Compute ghost indices +[2025-12-15 10:40:26.937] [RANK: 0] [info] Computing communication graph edges (using PCX algorithm). Number of input edges: 0 +[2025-12-15 10:40:26.937] [RANK: 0] [info] Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 +[2025-12-15 10:40:26.945] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 +[2025-12-15 10:40:26.945] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 +[2025-12-15 10:40:26.968] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2025-12-15 10:40:26.970] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2025-12-15 10:40:26.970] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2025-12-15 10:40:26.970] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2025-12-15 10:40:26.978] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 +[2025-12-15 10:40:26.978] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 +[2025-12-15 10:40:26.978] [RANK: 0] [info] Number of neighbourhood source ranks in distribute_to_postoffice: 0 +[2025-12-15 10:40:26.979] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2025-12-15 10:40:26.979] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2025-12-15 10:40:26.979] [RANK: 0] [info] Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.6666666666666666 +[2025-12-15 10:40:26.980] [RANK: 0] [info] Checking required entities per dimension +[2025-12-15 10:40:26.980] [RANK: 0] [info] Cell type: 0 dofmap: 53237x4 +[2025-12-15 10:40:26.995] [RANK: 0] [info] Global index computation +[2025-12-15 10:40:26.995] [RANK: 0] [info] Got 1 index_maps +[2025-12-15 10:40:26.995] [RANK: 0] [info] Get global indices +[2025-12-15 10:40:26.996] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2025-12-15 10:40:26.996] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 UnitCube (30x30x30) to be refined 0 times -[2024-11-11 02:15:05.216] [RANK: 0] [info] Computing mesh entities of dimension 2 -[2024-11-11 02:15:05.326] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-11 02:15:05.358] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-11 02:15:05.486] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-11 02:15:05.487] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-11 02:15:05.493] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) -[2024-11-11 02:15:05.493] [RANK: 0] [info] Computing mesh connectivity 2-3 from transpose. -[2024-11-11 02:15:05.496] [RANK: 0] [info] Checking required entities per dimension -[2024-11-11 02:15:05.497] [RANK: 0] [info] Cell type: 0 dofmap: 53193x4 -[2024-11-11 02:15:05.515] [RANK: 0] [info] Global index computation -[2024-11-11 02:15:05.515] [RANK: 0] [info] Got 1 index_maps -[2024-11-11 02:15:05.516] [RANK: 0] [info] Get global indices -[2024-11-11 02:15:05.524] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-11 02:15:05.524] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-11 02:15:05.525] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) -[2024-11-11 02:15:05.527] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) -[2024-11-11 02:15:05.527] [RANK: 0] [info] Requesting connectivity (2, 0) - (0, 0) -[2024-11-11 02:15:05.642] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) -[2024-11-11 02:15:05.642] [RANK: 0] [info] Requesting connectivity (3, 0) - (2, 0) -[2024-11-11 02:15:05.741] [RANK: 0] [info] Column ghost size increased from 458 to 1287 +[2025-12-15 10:40:27.000] [RANK: 0] [info] Computing mesh entities of dimension 2 +[2025-12-15 10:40:27.051] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2025-12-15 10:40:27.054] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2025-12-15 10:40:27.107] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2025-12-15 10:40:27.107] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2025-12-15 10:40:27.109] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) +[2025-12-15 10:40:27.109] [RANK: 0] [info] Computing mesh connectivity 2-3 from transpose. +[2025-12-15 10:40:27.111] [RANK: 0] [info] Checking required entities per dimension +[2025-12-15 10:40:27.111] [RANK: 0] [info] Cell type: 0 dofmap: 53237x4 +[2025-12-15 10:40:27.118] [RANK: 0] [info] Global index computation +[2025-12-15 10:40:27.118] [RANK: 0] [info] Got 1 index_maps +[2025-12-15 10:40:27.119] [RANK: 0] [info] Get global indices +[2025-12-15 10:40:27.119] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2025-12-15 10:40:27.119] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2025-12-15 10:40:27.120] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) +[2025-12-15 10:40:27.120] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) +[2025-12-15 10:40:27.120] [RANK: 0] [info] Requesting connectivity (2, 0) - (0, 0) +[2025-12-15 10:40:27.163] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) +[2025-12-15 10:40:27.163] [RANK: 0] [info] Requesting connectivity (3, 0) - (2, 0) +[2025-12-15 10:40:27.188] [RANK: 0] [info] Column ghost size increased from 478 to 1277 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.9.0 @@ -2826,7 +2862,7 @@ Total degrees of freedom: 29791 (29.8 thousand) Average degrees of freedom per process: 9930 ---------------------------------------------------------------- -[2024-11-11 02:15:05.977] [RANK: 0] [info] PETSc Krylov solver starting to solve system. +[2025-12-15 10:40:27.246] [RANK: 0] [info] PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero @@ -2872,41 +2908,41 @@ [MPI_MAX] Summary of timings | reps wall avg wall tot ------------------------------------------------------------------------------------------------------- -Build BoxMesh (tetrahedra) | 1 9.690000 9.690000 -Build dofmap data | 2 0.025000 0.050000 -Build sparsity | 1 0.060000 0.060000 -Compute connectivity 2-0 | 1 0.010000 0.010000 -Compute dof reordering map | 2 0.005000 0.010000 -Compute entities of dim = 2 | 1 0.280000 0.280000 -Compute graph partition (SCOTCH) | 1 9.070000 9.070000 -Compute local part of mesh dual graph (mixed) | 2 0.150000 0.300000 -Compute local-to-local map | 1 0.010000 0.010000 -Compute non-local part of mesh dual graph | 1 0.040000 0.040000 -Compute-local-to-global links for global/local adjacency list | 1 0.000000 0.000000 -Distribute fixed-degree adjacency list to destination ranks | 1 0.100000 0.100000 -Distribute row-wise data (scalable) | 1 0.010000 0.010000 -GPS: create_level_structure | 5 0.005000 0.010000 -Gibbs-Poole-Stockmeyer ordering | 1 0.020000 0.020000 -Init MPI | 1 0.120000 0.120000 +Build BoxMesh (tetrahedra) | 1 8.220000 8.220000 +Build dofmap data | 2 0.015000 0.030000 +Build sparsity | 1 0.010000 0.010000 +Compute connectivity 2-0 | 1 0.000000 0.000000 +Compute dof reordering map | 2 0.000000 0.000000 +Compute entities of dim = 2 | 1 0.110000 0.110000 +Compute graph partition (SCOTCH) | 1 7.930000 7.930000 +Compute local part of mesh dual graph (mixed) | 2 0.085000 0.170000 +Compute local-to-local map | 1 0.000000 0.000000 +Compute non-local part of mesh dual graph | 1 0.020000 0.020000 +Compute-local-to-global links for global/local adjacency list | 1 0.010000 0.010000 +Distribute fixed-degree adjacency list to destination ranks | 1 0.020000 0.020000 +Distribute row-wise data (scalable) | 1 0.000000 0.000000 +GPS: create_level_structure | 2 0.005000 0.010000 +Gibbs-Poole-Stockmeyer ordering | 1 0.010000 0.010000 +Init MPI | 1 0.030000 0.030000 Init PETSc | 1 0.000000 0.000000 -Init dofmap from element dofmap | 2 0.025000 0.050000 +Init dofmap from element dofmap | 2 0.010000 0.020000 Init logging | 1 0.000000 0.000000 -PETSc Krylov solver | 1 0.630000 0.630000 -SCOTCH: call SCOTCH_dgraphBuild | 1 0.000000 0.000000 -SCOTCH: call SCOTCH_dgraphPart | 1 9.070000 9.070000 -SparsityPattern::finalize | 1 0.050000 0.050000 -Topology: create | 1 0.150000 0.150000 -Topology: determine shared index ownership | 1 0.060000 0.060000 +PETSc Krylov solver | 1 0.230000 0.230000 +SCOTCH: call SCOTCH_dgraphBuild | 1 0.010000 0.010000 +SCOTCH: call SCOTCH_dgraphPart | 1 7.920000 7.920000 +SparsityPattern::finalize | 1 0.010000 0.010000 +Topology: create | 1 0.100000 0.100000 +Topology: determine shared index ownership | 1 0.050000 0.050000 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.010000 0.010000 -ZZZ Assemble | 1 0.440000 0.440000 -ZZZ Assemble matrix | 1 0.180000 0.180000 -ZZZ Assemble vector | 1 0.030000 0.030000 -ZZZ Create Mesh | 1 9.690000 9.690000 -ZZZ Create RHS function | 1 0.160000 0.160000 +ZZZ Assemble | 1 0.120000 0.120000 +ZZZ Assemble matrix | 1 0.040000 0.040000 +ZZZ Assemble vector | 1 0.010000 0.010000 +ZZZ Create Mesh | 1 8.220000 8.220000 +ZZZ Create RHS function | 1 0.040000 0.040000 ZZZ Create boundary conditions | 1 0.000000 0.000000 -ZZZ Create facets and facet->cell connectivity | 1 0.280000 0.280000 -ZZZ FunctionSpace | 1 0.030000 0.030000 -ZZZ Solve | 1 0.640000 0.640000 +ZZZ Create facets and facet->cell connectivity | 1 0.110000 0.110000 +ZZZ FunctionSpace | 1 0.010000 0.010000 +ZZZ Solve | 1 0.230000 0.230000 *** Number of Krylov iterations: 7 *** Solution norm: 36.6791 **************************************************************************************************************************************************************** @@ -2915,16 +2951,16 @@ ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ -/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-i686-linux-gnu/dolfinx-scaling-test on a named ionos2-i386 with 3 processes, by pbuilder1 on Mon Nov 11 02:15:06 2024 +/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-i686-linux-gnu/dolfinx-scaling-test on a named i-capture-the-hostname with 3 processes, by pbuilder2 on Mon Dec 15 10:40:27 2025 Using Petsc Release Version 3.21.6, Sep 28, 2024 Max Max/Min Avg Total -Time (sec): 1.108e+01 1.000 1.108e+01 +Time (sec): 8.693e+00 1.000 8.693e+00 Objects: 0.000e+00 0.000 0.000e+00 -Flops: 3.570e+06 1.037 3.488e+06 1.047e+07 -Flops/sec: 3.222e+05 1.037 3.148e+05 9.445e+05 +Flops: 3.522e+06 1.022 3.489e+06 1.047e+07 +Flops/sec: 4.052e+05 1.022 4.014e+05 1.204e+06 MPI Msg Count: 3.000e+01 1.000 3.000e+01 9.000e+01 -MPI Msg Len (bytes): 1.902e+05 1.175 6.008e+03 5.407e+05 +MPI Msg Len (bytes): 1.837e+05 1.152 5.818e+03 5.236e+05 MPI Reductions: 7.200e+01 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) @@ -2933,7 +2969,7 @@ Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total - 0: Main Stage: 1.1080e+01 100.0% 1.0465e+07 100.0% 9.000e+01 100.0% 6.008e+03 100.0% 5.400e+01 75.0% + 0: Main Stage: 8.6931e+00 100.0% 1.0467e+07 100.0% 9.000e+01 100.0% 5.818e+03 100.0% 5.400e+01 75.0% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. @@ -2957,32 +2993,32 @@ --- Event Stage 0: Main Stage -BuildTwoSided 5 1.0 4.3871e-02 165.6 0.00e+00 0.0 2.4e+01 4.0e+00 5.0e+00 0 0 27 0 7 0 0 27 0 9 0 -BuildTwoSidedF 2 1.0 4.3702e-02 117.8 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 -MatMult 7 1.0 7.4264e-03 1.3 1.96e+06 1.0 4.2e+01 5.7e+03 0.0e+00 0 55 47 45 0 0 55 47 45 0 772 -MatConvert 1 1.0 1.3039e-02 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 0 0 0 0 3 0 0 0 0 4 0 -MatAssemblyBegin 5 1.0 4.7209e-02 7.7 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 -MatAssemblyEnd 5 1.0 1.0020e-02 1.1 3.87e+03 1.2 1.2e+01 1.4e+03 5.0e+00 0 0 13 3 7 0 0 13 3 9 1 -MatGetRowIJ 4 1.0 9.8340e-06 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatView 1 1.0 3.4315e-04 3.1 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 0 0 0 0 1 0 0 0 0 2 0 -MatSetPreallCOO 2 1.0 3.9255e-03 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatSetValuesCOO 2 1.0 3.1072e-03 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecTDot 16 1.0 3.1749e-03 3.2 3.25e+05 1.0 0.0e+00 0.0e+00 1.6e+01 0 9 0 0 22 0 9 0 0 30 300 -VecNorm 8 1.0 2.4682e-03 5.9 1.62e+05 1.0 0.0e+00 0.0e+00 8.0e+00 0 5 0 0 11 0 5 0 0 15 193 -VecCopy 2 1.0 1.4690e-04 1.8 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecSet 9 1.0 1.2964e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecAXPY 14 1.0 5.2847e-04 1.4 2.84e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 1578 -VecAYPX 6 1.0 4.6823e-04 2.2 1.22e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 763 -VecScatterBegin 7 1.0 5.3033e-04 1.7 0.00e+00 0.0 4.2e+01 5.7e+03 0.0e+00 0 0 47 45 0 0 0 47 45 0 0 -VecScatterEnd 7 1.0 1.8337e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFSetGraph 3 1.0 9.3165e-05 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFSetUp 3 1.0 5.3219e-04 1.3 0.00e+00 0.0 3.6e+01 8.4e+02 3.0e+00 0 0 40 6 4 0 0 40 6 6 0 -SFPack 7 1.0 8.3736e-05 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFUnpack 7 1.0 1.2125e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -KSPSetUp 1 1.0 1.3497e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -KSPSolve 1 1.0 2.4260e-01 1.0 2.85e+06 1.0 4.2e+01 5.7e+03 2.4e+01 2 80 47 45 33 2 80 47 45 44 34 -PCSetUp 1 1.0 3.8839e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 4 0 0 0 3 4 0 0 0 4 0 -PCApply 8 1.0 2.3225e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 2 0 0 0 0 2 0 0 0 0 0 +BuildTwoSided 5 1.0 1.7023e-03 9.4 0.00e+00 0.0 2.4e+01 4.0e+00 5.0e+00 0 0 27 0 7 0 0 27 0 9 0 +BuildTwoSidedF 2 1.0 1.7188e-03 9.8 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 +MatMult 7 1.0 1.6690e-03 1.0 1.93e+06 1.0 4.2e+01 5.6e+03 0.0e+00 0 55 47 45 0 0 55 47 45 0 3433 +MatConvert 1 1.0 3.7013e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 0 0 0 0 3 0 0 0 0 4 0 +MatAssemblyBegin 5 1.0 3.5006e-03 2.0 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 +MatAssemblyEnd 5 1.0 3.0381e-03 1.0 3.75e+03 1.2 1.2e+01 1.4e+03 5.0e+00 0 0 13 3 7 0 0 13 3 9 3 +MatGetRowIJ 4 1.0 1.4570e-06 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +MatView 1 1.0 1.6423e-04 3.6 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 0 0 0 0 1 0 0 0 0 2 0 +MatSetPreallCOO 2 1.0 1.0293e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +MatSetValuesCOO 2 1.0 7.5502e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +VecTDot 16 1.0 2.6826e-04 1.1 3.20e+05 1.0 0.0e+00 0.0e+00 1.6e+01 0 9 0 0 22 0 9 0 0 30 3554 +VecNorm 8 1.0 2.6409e-04 1.9 1.60e+05 1.0 0.0e+00 0.0e+00 8.0e+00 0 5 0 0 11 0 5 0 0 15 1805 +VecCopy 2 1.0 3.1081e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +VecSet 9 1.0 5.0462e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +VecAXPY 14 1.0 1.5281e-04 1.1 2.80e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 5459 +VecAYPX 6 1.0 7.8036e-05 1.0 1.20e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 4581 +VecScatterBegin 7 1.0 9.0384e-05 1.0 0.00e+00 0.0 4.2e+01 5.6e+03 0.0e+00 0 0 47 45 0 0 0 47 45 0 0 +VecScatterEnd 7 1.0 4.0339e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFSetGraph 3 1.0 3.9355e-05 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFSetUp 3 1.0 1.2338e-04 1.1 0.00e+00 0.0 3.6e+01 8.1e+02 3.0e+00 0 0 40 6 4 0 0 40 6 6 0 +SFPack 7 1.0 3.1382e-05 1.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFUnpack 7 1.0 1.8650e-06 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +KSPSetUp 1 1.0 6.0666e-05 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +KSPSolve 1 1.0 6.3705e-02 1.0 2.81e+06 1.0 4.2e+01 5.6e+03 2.4e+01 1 80 47 45 33 1 80 47 45 44 131 +PCSetUp 1 1.0 1.6006e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 2 0 0 0 3 2 0 0 0 4 0 +PCApply 8 1.0 6.1292e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 0 ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. @@ -2999,9 +3035,9 @@ Preconditioner 1 1 Viewer 1 1 ======================================================================================================================== -Average time to get PetscTime(): 7.164e-07 -Average time for MPI_Barrier(): 5.747e-06 -Average time for zero size MPI_Send(): 4.72267e-06 +Average time to get PetscTime(): 5.75e-08 +Average time for MPI_Barrier(): 1.8888e-06 +Average time for zero size MPI_Send(): 1.72533e-06 #PETSc Option Table entries: --ndofs 10000 # (source: command line) --problem_type poisson # (source: command line) @@ -3058,69 +3094,69 @@ Option left: name:--problem_type value: poisson source: command line Option left: name:--scaling_type value: weak source: command line ==== poisson strong scaling (3 processes with ndofs=30000) ==== -[2024-11-11 02:15:06.958] [RANK: 0] [info] Using partitioner with 216000 cell data -[2024-11-11 02:15:06.961] [RANK: 0] [info] Compute partition of cells across ranks -[2024-11-11 02:15:06.961] [RANK: 0] [info] Building mesh dual graph -[2024-11-11 02:15:06.961] [RANK: 0] [info] Build local part of mesh dual graph (mixed) -[2024-11-11 02:15:07.099] [RANK: 0] [info] Build nonlocal part of mesh dual graph -[2024-11-11 02:15:07.205] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-11 02:15:07.205] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-11 02:15:07.205] [RANK: 0] [info] Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.6666666666666666, 0.6666666666666666 -[2024-11-11 02:15:07.211] [RANK: 0] [info] Graph edges (local: 210000, non-local: 1800) -[2024-11-11 02:15:07.211] [RANK: 0] [info] Compute graph partition using PT-SCOTCH -[2024-11-11 02:15:17.851] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 -[2024-11-11 02:15:17.874] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 -[2024-11-11 02:15:17.932] [RANK: 0] [info] Extract basic topology: 212756->212756 -[2024-11-11 02:15:17.932] [RANK: 0] [info] Build local dual graph -[2024-11-11 02:15:17.932] [RANK: 0] [info] Build local part of mesh dual graph (mixed) -[2024-11-11 02:15:18.069] [RANK: 0] [info] GPS pseudo-diameter:(162) 50324-3669 -[2024-11-11 02:15:18.086] [RANK: 0] [info] Create topology (single cell type) -[2024-11-11 02:15:18.086] [RANK: 0] [info] Create topology (generalised) -[2024-11-11 02:15:18.149] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 -[2024-11-11 02:15:18.149] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 -[2024-11-11 02:15:18.171] [RANK: 0] [info] Compute ghost indices -[2024-11-11 02:15:18.171] [RANK: 0] [info] Computing communication graph edges (using PCX algorithm). Number of input edges: 0 -[2024-11-11 02:15:18.171] [RANK: 0] [info] Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 -[2024-11-11 02:15:18.181] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 -[2024-11-11 02:15:18.182] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 -[2024-11-11 02:15:18.211] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-11 02:15:18.219] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-11 02:15:18.220] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-11 02:15:18.220] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-11 02:15:18.237] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 -[2024-11-11 02:15:18.237] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 -[2024-11-11 02:15:18.237] [RANK: 0] [info] Number of neighbourhood source ranks in distribute_to_postoffice: 0 -[2024-11-11 02:15:18.238] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-11 02:15:18.238] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-11 02:15:18.238] [RANK: 0] [info] Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.6666666666666666 -[2024-11-11 02:15:18.239] [RANK: 0] [info] Checking required entities per dimension -[2024-11-11 02:15:18.239] [RANK: 0] [info] Cell type: 0 dofmap: 53189x4 -[2024-11-11 02:15:18.257] [RANK: 0] [info] Global index computation -[2024-11-11 02:15:18.257] [RANK: 0] [info] Got 1 index_maps -[2024-11-11 02:15:18.258] [RANK: 0] [info] Get global indices -[2024-11-11 02:15:18.260] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-11 02:15:18.260] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2025-12-15 10:40:27.548] [RANK: 0] [info] Using partitioner with 216000 cell data +[2025-12-15 10:40:27.549] [RANK: 0] [info] Compute partition of cells across ranks +[2025-12-15 10:40:27.549] [RANK: 0] [info] Building mesh dual graph +[2025-12-15 10:40:27.549] [RANK: 0] [info] Build local part of mesh dual graph (mixed) +[2025-12-15 10:40:27.607] [RANK: 0] [info] Build nonlocal part of mesh dual graph +[2025-12-15 10:40:27.634] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2025-12-15 10:40:27.634] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2025-12-15 10:40:27.634] [RANK: 0] [info] Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.6666666666666666, 0.6666666666666666 +[2025-12-15 10:40:27.636] [RANK: 0] [info] Graph edges (local: 210000, non-local: 1800) +[2025-12-15 10:40:27.636] [RANK: 0] [info] Compute graph partition using PT-SCOTCH +[2025-12-15 10:40:35.565] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 +[2025-12-15 10:40:35.565] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 +[2025-12-15 10:40:35.573] [RANK: 0] [info] Extract basic topology: 213040->213040 +[2025-12-15 10:40:35.573] [RANK: 0] [info] Build local dual graph +[2025-12-15 10:40:35.573] [RANK: 0] [info] Build local part of mesh dual graph (mixed) +[2025-12-15 10:40:35.657] [RANK: 0] [info] GPS pseudo-diameter:(160) 51361-1604 +[2025-12-15 10:40:35.664] [RANK: 0] [info] Create topology (single cell type) +[2025-12-15 10:40:35.664] [RANK: 0] [info] Create topology (generalised) +[2025-12-15 10:40:35.671] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 3 +[2025-12-15 10:40:35.671] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 +[2025-12-15 10:40:35.685] [RANK: 0] [info] Compute ghost indices +[2025-12-15 10:40:35.685] [RANK: 0] [info] Computing communication graph edges (using PCX algorithm). Number of input edges: 0 +[2025-12-15 10:40:35.685] [RANK: 0] [info] Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 +[2025-12-15 10:40:35.690] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 +[2025-12-15 10:40:35.691] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 +[2025-12-15 10:40:35.708] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2025-12-15 10:40:35.708] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2025-12-15 10:40:35.708] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2025-12-15 10:40:35.708] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2025-12-15 10:40:35.713] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 0 +[2025-12-15 10:40:35.713] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 +[2025-12-15 10:40:35.713] [RANK: 0] [info] Number of neighbourhood source ranks in distribute_to_postoffice: 0 +[2025-12-15 10:40:35.714] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2025-12-15 10:40:35.714] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2025-12-15 10:40:35.714] [RANK: 0] [info] Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.6666666666666666 +[2025-12-15 10:40:35.714] [RANK: 0] [info] Checking required entities per dimension +[2025-12-15 10:40:35.714] [RANK: 0] [info] Cell type: 0 dofmap: 53260x4 +[2025-12-15 10:40:35.722] [RANK: 0] [info] Global index computation +[2025-12-15 10:40:35.722] [RANK: 0] [info] Got 1 index_maps +[2025-12-15 10:40:35.722] [RANK: 0] [info] Get global indices +[2025-12-15 10:40:35.723] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2025-12-15 10:40:35.723] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 UnitCube (30x30x30) to be refined 0 times -[2024-11-11 02:15:18.267] [RANK: 0] [info] Computing mesh entities of dimension 2 -[2024-11-11 02:15:18.375] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-11 02:15:18.396] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-11 02:15:18.511] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-11 02:15:18.511] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-11 02:15:18.518] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) -[2024-11-11 02:15:18.518] [RANK: 0] [info] Computing mesh connectivity 2-3 from transpose. -[2024-11-11 02:15:18.521] [RANK: 0] [info] Checking required entities per dimension -[2024-11-11 02:15:18.521] [RANK: 0] [info] Cell type: 0 dofmap: 53189x4 -[2024-11-11 02:15:18.540] [RANK: 0] [info] Global index computation -[2024-11-11 02:15:18.540] [RANK: 0] [info] Got 1 index_maps -[2024-11-11 02:15:18.541] [RANK: 0] [info] Get global indices -[2024-11-11 02:15:18.543] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 -[2024-11-11 02:15:18.543] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 -[2024-11-11 02:15:18.545] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) -[2024-11-11 02:15:18.546] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) -[2024-11-11 02:15:18.546] [RANK: 0] [info] Requesting connectivity (2, 0) - (0, 0) -[2024-11-11 02:15:18.692] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) -[2024-11-11 02:15:18.692] [RANK: 0] [info] Requesting connectivity (3, 0) - (2, 0) -[2024-11-11 02:15:18.754] [RANK: 0] [info] Column ghost size increased from 455 to 1221 +[2025-12-15 10:40:35.725] [RANK: 0] [info] Computing mesh entities of dimension 2 +[2025-12-15 10:40:35.775] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2025-12-15 10:40:35.776] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2025-12-15 10:40:35.828] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2025-12-15 10:40:35.828] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2025-12-15 10:40:35.831] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) +[2025-12-15 10:40:35.831] [RANK: 0] [info] Computing mesh connectivity 2-3 from transpose. +[2025-12-15 10:40:35.832] [RANK: 0] [info] Checking required entities per dimension +[2025-12-15 10:40:35.832] [RANK: 0] [info] Cell type: 0 dofmap: 53260x4 +[2025-12-15 10:40:35.840] [RANK: 0] [info] Global index computation +[2025-12-15 10:40:35.840] [RANK: 0] [info] Got 1 index_maps +[2025-12-15 10:40:35.840] [RANK: 0] [info] Get global indices +[2025-12-15 10:40:35.841] [RANK: 0] [info] Computing communication graph edges (using NBX algorithm). Number of input edges: 2 +[2025-12-15 10:40:35.841] [RANK: 0] [info] Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 +[2025-12-15 10:40:35.841] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) +[2025-12-15 10:40:35.841] [RANK: 0] [info] Requesting connectivity (3, 0) - (0, 0) +[2025-12-15 10:40:35.841] [RANK: 0] [info] Requesting connectivity (2, 0) - (0, 0) +[2025-12-15 10:40:35.886] [RANK: 0] [info] Requesting connectivity (2, 0) - (3, 0) +[2025-12-15 10:40:35.886] [RANK: 0] [info] Requesting connectivity (3, 0) - (2, 0) +[2025-12-15 10:40:35.907] [RANK: 0] [info] Column ghost size increased from 462 to 1291 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.9.0 @@ -3134,7 +3170,7 @@ Total degrees of freedom: 29791 (29.8 thousand) Average degrees of freedom per process: 9930 ---------------------------------------------------------------- -[2024-11-11 02:15:18.950] [RANK: 0] [info] PETSc Krylov solver starting to solve system. +[2025-12-15 10:40:35.978] [RANK: 0] [info] PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero @@ -3178,43 +3214,43 @@ total number of mallocs used during MatSetValues calls=0 not using I-node (on process 0) routines -[MPI_MAX] Summary of timings | reps wall avg wall tot ---------------------------------------------------------------------------------------------------------- -Build BoxMesh (tetrahedra) | 1 11.320000 11.320000 -Build dofmap data | 2 0.025000 0.050000 -Build sparsity | 1 0.040000 0.040000 -Compute connectivity 2-0 | 1 0.010000 0.010000 -Compute dof reordering map | 2 0.000000 0.000000 -Compute entities of dim = 2 | 1 0.250000 0.250000 -Compute graph partition (SCOTCH) | 1 10.620000 10.620000 -Compute local part of mesh dual graph (mixed) | 2 0.195000 0.390000 -Compute local-to-local map | 1 0.000000 0.000000 -Compute non-local part of mesh dual graph | 1 0.110000 0.110000 -Compute-local-to-global links for global/local adjacency list | 1 0.010000 0.010000 -Distribute fixed-degree adjacency list to destination ranks | 1 0.140000 0.140000 -Distribute row-wise data (scalable) | 1 0.000000 0.000000 -GPS: create_level_structure | 2 0.002000 0.010000 -Gibbs-Poole-Stockmeyer ordering | 1 0.030000 0.030000 -Init MPI | 1 0.160000 0.160000 -Init PETSc | 1 0.020000 0.020000 -Init dofmap from element dofmap | 2 0.020000 0.040000 -Init logging | 1 0.000000 0.000000 -PETSc Krylov solver | 1 0.520000 0.520000 -SCOTCH: call SCOTCH_dgraphBuild | 1 0.010000 0.010000 -SCOTCH: call SCOTCH_dgraphPart | 1 10.610000 10.610000 -SparsityPattern::finalize | 1 0.050000 0.050000 -Topology: create | 1 0.130000 0.130000 -Topology: determine shared index ownership | 1 0.050000 0.050000 -Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.010000 0.010000 -ZZZ Assemble | 1 0.400000 0.400000 -ZZZ Assemble matrix | 1 0.150000 0.150000 -ZZZ Assemble vector | 1 0.040000 0.040000 -ZZZ Create Mesh | 1 11.340000 11.340000 -ZZZ Create RHS function | 1 0.140000 0.140000 -ZZZ Create boundary conditions | 1 0.000000 0.000000 -ZZZ Create facets and facet->cell connectivity | 1 0.260000 0.260000 -ZZZ FunctionSpace | 1 0.030000 0.030000 -ZZZ Solve | 1 0.520000 0.520000 +[MPI_MAX] Summary of timings | reps wall avg wall tot +------------------------------------------------------------------------------------------------------- +Build BoxMesh (tetrahedra) | 1 8.180000 8.180000 +Build dofmap data | 2 0.010000 0.020000 +Build sparsity | 1 0.010000 0.010000 +Compute connectivity 2-0 | 1 0.000000 0.000000 +Compute dof reordering map | 2 0.000000 0.000000 +Compute entities of dim = 2 | 1 0.110000 0.110000 +Compute graph partition (SCOTCH) | 1 7.930000 7.930000 +Compute local part of mesh dual graph (mixed) | 2 0.085000 0.170000 +Compute local-to-local map | 1 0.000000 0.000000 +Compute non-local part of mesh dual graph | 1 0.030000 0.030000 +Compute-local-to-global links for global/local adjacency list | 1 0.000000 0.000000 +Distribute fixed-degree adjacency list to destination ranks | 1 0.020000 0.020000 +Distribute row-wise data (scalable) | 1 0.000000 0.000000 +GPS: create_level_structure | 2 0.005000 0.010000 +Gibbs-Poole-Stockmeyer ordering | 1 0.010000 0.010000 +Init MPI | 1 0.020000 0.020000 +Init PETSc | 1 0.000000 0.000000 +Init dofmap from element dofmap | 2 0.010000 0.020000 +Init logging | 1 0.000000 0.000000 +PETSc Krylov solver | 1 0.220000 0.220000 +SCOTCH: call SCOTCH_dgraphBuild | 1 0.000000 0.000000 +SCOTCH: call SCOTCH_dgraphPart | 1 7.920000 7.920000 +SparsityPattern::finalize | 1 0.020000 0.020000 +Topology: create | 1 0.070000 0.070000 +Topology: determine shared index ownership | 1 0.030000 0.030000 +Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.010000 0.010000 +ZZZ Assemble | 1 0.140000 0.140000 +ZZZ Assemble matrix | 1 0.050000 0.050000 +ZZZ Assemble vector | 1 0.020000 0.020000 +ZZZ Create Mesh | 1 8.180000 8.180000 +ZZZ Create RHS function | 1 0.040000 0.040000 +ZZZ Create boundary conditions | 1 0.000000 0.000000 +ZZZ Create facets and facet->cell connectivity | 1 0.110000 0.110000 +ZZZ FunctionSpace | 1 0.010000 0.010000 +ZZZ Solve | 1 0.220000 0.220000 *** Number of Krylov iterations: 7 *** Solution norm: 36.6791 **************************************************************************************************************************************************************** @@ -3223,16 +3259,16 @@ ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ -/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-i686-linux-gnu/dolfinx-scaling-test on a named ionos2-i386 with 3 processes, by pbuilder1 on Mon Nov 11 02:15:19 2024 +/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-i686-linux-gnu/dolfinx-scaling-test on a named i-capture-the-hostname with 3 processes, by pbuilder2 on Mon Dec 15 10:40:36 2025 Using Petsc Release Version 3.21.6, Sep 28, 2024 Max Max/Min Avg Total -Time (sec): 1.254e+01 1.000 1.254e+01 +Time (sec): 8.659e+00 1.000 8.659e+00 Objects: 0.000e+00 0.000 0.000e+00 -Flops: 3.534e+06 1.026 3.490e+06 1.047e+07 -Flops/sec: 2.819e+05 1.026 2.783e+05 8.350e+05 +Flops: 3.522e+06 1.021 3.489e+06 1.047e+07 +Flops/sec: 4.068e+05 1.021 4.029e+05 1.209e+06 MPI Msg Count: 3.000e+01 1.000 3.000e+01 9.000e+01 -MPI Msg Len (bytes): 1.815e+05 1.189 5.676e+03 5.108e+05 +MPI Msg Len (bytes): 1.864e+05 1.160 5.857e+03 5.271e+05 MPI Reductions: 7.200e+01 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) @@ -3241,7 +3277,7 @@ Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total - 0: Main Stage: 1.2537e+01 100.0% 1.0469e+07 100.0% 9.000e+01 100.0% 5.676e+03 100.0% 5.400e+01 75.0% + 0: Main Stage: 8.6587e+00 100.0% 1.0466e+07 100.0% 9.000e+01 100.0% 5.857e+03 100.0% 5.400e+01 75.0% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. @@ -3265,32 +3301,32 @@ --- Event Stage 0: Main Stage -BuildTwoSided 5 1.0 3.5857e-02 288.7 0.00e+00 0.0 2.4e+01 4.0e+00 5.0e+00 0 0 27 0 7 0 0 27 0 9 0 -BuildTwoSidedF 2 1.0 3.5871e-02 236.2 0.00e+00 0.0 1.2e+01 2.1e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 -MatMult 7 1.0 7.6302e-03 1.1 1.93e+06 1.0 4.2e+01 5.4e+03 0.0e+00 0 55 47 45 0 0 55 47 45 0 751 -MatConvert 1 1.0 1.2627e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 0 0 0 0 3 0 0 0 0 4 0 -MatAssemblyBegin 5 1.0 3.8792e-02 11.2 0.00e+00 0.0 1.2e+01 2.1e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 -MatAssemblyEnd 5 1.0 8.2733e-03 1.2 3.61e+03 1.2 1.2e+01 1.4e+03 5.0e+00 0 0 13 3 7 0 0 13 3 9 1 -MatGetRowIJ 4 1.0 1.1211e-05 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatView 1 1.0 3.7040e-04 2.3 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 0 0 0 0 1 0 0 0 0 2 0 -MatSetPreallCOO 2 1.0 3.7683e-03 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -MatSetValuesCOO 2 1.0 2.9216e-03 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecTDot 16 1.0 1.1791e-03 2.1 3.22e+05 1.0 0.0e+00 0.0e+00 1.6e+01 0 9 0 0 22 0 9 0 0 30 808 -VecNorm 8 1.0 1.3845e-03 4.9 1.61e+05 1.0 0.0e+00 0.0e+00 8.0e+00 0 5 0 0 11 0 5 0 0 15 344 -VecCopy 2 1.0 1.0758e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecSet 9 1.0 1.5982e-04 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -VecAXPY 14 1.0 6.3867e-04 1.5 2.82e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 1306 -VecAYPX 6 1.0 3.1022e-04 1.4 1.21e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 1152 -VecScatterBegin 7 1.0 2.1738e-04 1.1 0.00e+00 0.0 4.2e+01 5.4e+03 0.0e+00 0 0 47 45 0 0 0 47 45 0 0 -VecScatterEnd 7 1.0 1.6020e-04 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFSetGraph 3 1.0 8.4082e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFSetUp 3 1.0 2.9561e-04 1.1 0.00e+00 0.0 3.6e+01 7.9e+02 3.0e+00 0 0 40 6 4 0 0 40 6 6 0 -SFPack 7 1.0 5.8186e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -SFUnpack 7 1.0 1.1517e-05 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -KSPSetUp 1 1.0 2.7074e-04 2.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 -KSPSolve 1 1.0 2.0574e-01 1.0 2.82e+06 1.0 4.2e+01 5.4e+03 2.4e+01 2 80 47 45 33 2 80 47 45 44 41 -PCSetUp 1 1.0 3.0512e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 2 0 0 0 3 2 0 0 0 4 0 -PCApply 8 1.0 1.9601e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 2 0 0 0 0 2 0 0 0 0 0 +BuildTwoSided 5 1.0 7.9633e-03 68.6 0.00e+00 0.0 2.4e+01 4.0e+00 5.0e+00 0 0 27 0 7 0 0 27 0 9 0 +BuildTwoSidedF 2 1.0 7.9706e-03 61.3 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 +MatMult 7 1.0 1.6814e-03 1.1 1.93e+06 1.0 4.2e+01 5.6e+03 0.0e+00 0 55 47 45 0 0 55 47 45 0 3408 +MatConvert 1 1.0 3.7030e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 0 0 0 0 3 0 0 0 0 4 0 +MatAssemblyBegin 5 1.0 9.4578e-03 5.1 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 +MatAssemblyEnd 5 1.0 3.1377e-03 1.0 3.63e+03 1.1 1.2e+01 1.4e+03 5.0e+00 0 0 13 3 7 0 0 13 3 9 3 +MatGetRowIJ 4 1.0 1.5210e-06 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +MatView 1 1.0 1.7086e-04 3.6 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 0 0 0 0 1 0 0 0 0 2 0 +MatSetPreallCOO 2 1.0 1.0664e-03 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +MatSetValuesCOO 2 1.0 7.3693e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +VecTDot 16 1.0 3.4822e-04 1.5 3.20e+05 1.0 0.0e+00 0.0e+00 1.6e+01 0 9 0 0 22 0 9 0 0 30 2738 +VecNorm 8 1.0 2.3305e-04 1.8 1.60e+05 1.0 0.0e+00 0.0e+00 8.0e+00 0 5 0 0 11 0 5 0 0 15 2045 +VecCopy 2 1.0 3.1179e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +VecSet 9 1.0 5.0792e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +VecAXPY 14 1.0 1.4066e-04 1.0 2.80e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 5930 +VecAYPX 6 1.0 8.6016e-05 1.1 1.20e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 4156 +VecScatterBegin 7 1.0 9.2381e-05 1.1 0.00e+00 0.0 4.2e+01 5.6e+03 0.0e+00 0 0 47 45 0 0 0 47 45 0 0 +VecScatterEnd 7 1.0 4.9955e-05 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFSetGraph 3 1.0 3.7924e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFSetUp 3 1.0 1.2167e-04 1.1 0.00e+00 0.0 3.6e+01 8.1e+02 3.0e+00 0 0 40 6 4 0 0 40 6 6 0 +SFPack 7 1.0 3.0836e-05 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +SFUnpack 7 1.0 3.1000e-06 2.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +KSPSetUp 1 1.0 5.8251e-05 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 +KSPSolve 1 1.0 6.4496e-02 1.0 2.81e+06 1.0 4.2e+01 5.6e+03 2.4e+01 1 80 47 45 33 1 80 47 45 44 129 +PCSetUp 1 1.0 1.5986e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 2 0 0 0 3 2 0 0 0 4 0 +PCApply 8 1.0 6.2080e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 0 ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. @@ -3307,9 +3343,9 @@ Preconditioner 1 1 Viewer 1 1 ======================================================================================================================== -Average time to get PetscTime(): 6.386e-07 -Average time for MPI_Barrier(): 3.7534e-06 -Average time for zero size MPI_Send(): 3.48933e-06 +Average time to get PetscTime(): 6.35e-08 +Average time for MPI_Barrier(): 1.8192e-06 +Average time for zero size MPI_Send(): 1.54967e-06 #PETSc Option Table entries: --ndofs 30000 # (source: command line) --problem_type poisson # (source: command line) @@ -3370,7 +3406,7 @@ dh_testroot -O--buildsystem=cmake -O--sourcedirectory=src dh_prep -O--buildsystem=cmake -O--sourcedirectory=src dh_auto_install -O--buildsystem=cmake -O--sourcedirectory=src - cd obj-i686-linux-gnu && make -j11 install DESTDIR=/build/reproducible-path/fenicsx-performance-tests-0.9.0/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-i686-linux-gnu && make -j21 install DESTDIR=/build/reproducible-path/fenicsx-performance-tests-0.9.0/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/fenicsx-performance-tests-0.9.0/src -B/build/reproducible-path/fenicsx-performance-tests-0.9.0/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -3401,9 +3437,9 @@ dh_gencontrol -O--buildsystem=cmake -O--sourcedirectory=src dh_md5sums -O--buildsystem=cmake -O--sourcedirectory=src dh_builddeb -O--buildsystem=cmake -O--sourcedirectory=src +dpkg-deb: building package 'fenicsx-performance-tests' in '../fenicsx-performance-tests_0.9.0-2_i386.deb'. dpkg-deb: building package 'fenicsx-performance-tests-dbgsym' in '../fenicsx-performance-tests-dbgsym_0.9.0-2_i386.deb'. dpkg-deb: building package 'fenicsx-performance-tests-source' in '../fenicsx-performance-tests-source_0.9.0-2_all.deb'. -dpkg-deb: building package 'fenicsx-performance-tests' in '../fenicsx-performance-tests_0.9.0-2_i386.deb'. dpkg-genbuildinfo --build=binary -O../fenicsx-performance-tests_0.9.0-2_i386.buildinfo dpkg-genchanges --build=binary -O../fenicsx-performance-tests_0.9.0-2_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -3411,12 +3447,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/111551/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/111551/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/13953 and its subdirectories -I: Current time: Mon Nov 11 02:15:42 -12 2024 -I: pbuilder-time-stamp: 1731334542 +I: removing directory /srv/workspace/pbuilder/111551 and its subdirectories +I: Current time: Mon Dec 15 10:40:45 +14 2025 +I: pbuilder-time-stamp: 1765744845