Diff of the two buildlogs: -- --- b1/build.log 2024-10-11 17:21:58.187021308 +0000 +++ b2/build.log 2024-10-11 17:23:22.399428990 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Oct 11 05:19:33 -12 2024 -I: pbuilder-time-stamp: 1728667173 +I: Current time: Sat Oct 12 07:22:17 +14 2024 +I: pbuilder-time-stamp: 1728667337 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -32,52 +32,84 @@ dpkg-source: info: applying flags.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/8254/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/21812/tmp/hooks/D01_modify_environment starting +debug: Running on virt32b. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 11 17:22 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/21812/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/21812/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=5 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='3434bd2b378042b8b825798d16d3952f' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='8254' - PS1='# ' - PS2='> ' + INVOCATION_ID=d50680d5886c42bc93632dc75918c238 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=21812 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.1uhx3vTq/pbuilderrc_gVJ9 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.1uhx3vTq/b1 --logfile b1/build.log sprai_0.9.9.23+dfsg1-3.dsc' - SUDO_GID='114' - SUDO_UID='109' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.1uhx3vTq/pbuilderrc_xN3v --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.1uhx3vTq/b2 --logfile b2/build.log sprai_0.9.9.23+dfsg1-3.dsc' + SUDO_GID=112 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux ff64a 6.1.0-26-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-26-armmp-lpae #1 SMP Debian 6.1.112-1 (2024-09-30) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/8254/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/21812/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -273,7 +305,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/sprai-0.9.9.23+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../sprai_0.9.9.23+dfsg1-3_source.changes +I: user script /srv/workspace/pbuilder/21812/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/21812/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/sprai-0.9.9.23+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../sprai_0.9.9.23+dfsg1-3_source.changes dpkg-buildpackage: info: source package sprai dpkg-buildpackage: info: source version 0.9.9.23+dfsg1-3 dpkg-buildpackage: info: source distribution unstable @@ -291,27 +327,27 @@ dh_autoreconf -O--buildsystem=makefile dh_auto_configure -O--buildsystem=makefile dh_auto_build -O--buildsystem=makefile - make -j5 "INSTALL=install --strip-program=true" + make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/sprai-0.9.9.23+dfsg1' cc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sprai-0.9.9.23+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o bfmt72s bfmt72s.c cc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sprai-0.9.9.23+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o nss2v_v3 nss2v_v3.c cc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sprai-0.9.9.23+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o myrealigner myrealigner.c cc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sprai-0.9.9.23+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o m52bfmt7 m52bfmt7.c -bfmt72s.c: In function 'main': -bfmt72s.c:444:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] - 444 | fgets(buf+line_length, LBUF + 1, fp); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ nss2v_v3.c: In function 'get_sam_record': nss2v_v3.c:471:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 471 | fgets(buf+line_length, buffer_size + 1, in_sam); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +bfmt72s.c: In function 'main': +bfmt72s.c:444:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] + 444 | fgets(buf+line_length, LBUF + 1, fp); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[1]: Leaving directory '/build/reproducible-path/sprai-0.9.9.23+dfsg1' dh_auto_test -O--buildsystem=makefile create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=makefile dh_prep -O--buildsystem=makefile dh_auto_install --destdir=debian/sprai/ -O--buildsystem=makefile - make -j5 install DESTDIR=/build/reproducible-path/sprai-0.9.9.23\+dfsg1/debian/sprai AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + make -j4 install DESTDIR=/build/reproducible-path/sprai-0.9.9.23\+dfsg1/debian/sprai AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/sprai-0.9.9.23+dfsg1' chmod 766 bfmt72s nss2v_v3 myrealigner m52bfmt7 ca_ikki_v5.pl ezez4makefile_v4.pl ezez4qsub_vx1.pl ezez_vx1.pl dumbbell_filter.pl fa2fq.pl fq2fa.pl fq2idfq.pl fqfilt.pl get_top_20x_fa.pl partition_fa.pl get_target_fasta_records.pl dfq2fq_v2.pl extract_fq.pl bfmtx2m4.pl check_redundancy.pl check_circularity.pl mkdir -vp /build/reproducible-path/sprai-0.9.9.23+dfsg1/debian/sprai/usr/bin/ @@ -366,8 +402,8 @@ dh_gencontrol -O--buildsystem=makefile dh_md5sums -O--buildsystem=makefile dh_builddeb -O--buildsystem=makefile -dpkg-deb: building package 'sprai-dbgsym' in '../sprai-dbgsym_0.9.9.23+dfsg1-3_armhf.deb'. dpkg-deb: building package 'sprai' in '../sprai_0.9.9.23+dfsg1-3_armhf.deb'. +dpkg-deb: building package 'sprai-dbgsym' in '../sprai-dbgsym_0.9.9.23+dfsg1-3_armhf.deb'. dpkg-genbuildinfo --build=binary -O../sprai_0.9.9.23+dfsg1-3_armhf.buildinfo dpkg-genchanges --build=binary -O../sprai_0.9.9.23+dfsg1-3_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -375,12 +411,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/21812/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/21812/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/8254 and its subdirectories -I: Current time: Fri Oct 11 05:21:53 -12 2024 -I: pbuilder-time-stamp: 1728667313 +I: removing directory /srv/workspace/pbuilder/21812 and its subdirectories +I: Current time: Sat Oct 12 07:23:18 +14 2024 +I: pbuilder-time-stamp: 1728667398