Diff of the two buildlogs: -- --- b1/build.log 2025-01-11 13:08:42.038875071 +0000 +++ b2/build.log 2025-01-11 13:16:14.154220847 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Jan 11 01:03:31 -12 2025 -I: pbuilder-time-stamp: 1736600611 +I: Current time: Sun Jan 12 03:11:32 +14 2025 +I: pbuilder-time-stamp: 1736601092 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -26,52 +26,84 @@ dpkg-source: info: applying use-new-mpb.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/6057/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/30189/tmp/hooks/D01_modify_environment starting +debug: Running on virt64c. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jan 11 13:11 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/30189/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/30189/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='aef49f86091d413f865dcc423adb28fb' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='6057' - PS1='# ' - PS2='> ' + INVOCATION_ID=2c64e91131d54914adaeee6c57cd05b5 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=30189 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.qWV77bnk/pbuilderrc_xO84 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.qWV77bnk/b1 --logfile b1/build.log seqkit_2.9.0+ds-1.dsc' - SUDO_GID='110' - SUDO_UID='103' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.qWV77bnk/pbuilderrc_oOxL --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.qWV77bnk/b2 --logfile b2/build.log seqkit_2.9.0+ds-1.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux virt32z 6.1.0-28-armmp-lpae #1 SMP Debian 6.1.119-1 (2024-11-22) armv7l GNU/Linux + Linux i-capture-the-hostname 6.1.0-28-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/6057/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/30189/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -326,7 +358,7 @@ Get: 153 http://deb.debian.org/debian unstable/main armhf libhts3t64 armhf 1.20+ds-2 [401 kB] Get: 154 http://deb.debian.org/debian unstable/main armhf libncurses6 armhf 6.5-2+b1 [82.3 kB] Get: 155 http://deb.debian.org/debian unstable/main armhf samtools armhf 1.20-3 [620 kB] -Fetched 125 MB in 11s (11.2 MB/s) +Fetched 125 MB in 2s (66.5 MB/s) Preconfiguring packages ... Selecting previously unselected package tzdata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19562 files and directories currently installed.) @@ -837,8 +869,8 @@ Setting up tzdata (2024b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Sat Jan 11 13:04:45 UTC 2025. -Universal Time is now: Sat Jan 11 13:04:45 UTC 2025. +Local time is now: Sat Jan 11 13:12:40 UTC 2025. +Universal Time is now: Sat Jan 11 13:12:40 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up golang-github-cespare-xxhash-dev (2.3.0-1) ... @@ -967,7 +999,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/seqkit-2.9.0+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../seqkit_2.9.0+ds-1_source.changes +I: user script /srv/workspace/pbuilder/30189/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/30189/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/seqkit-2.9.0+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../seqkit_2.9.0+ds-1_source.changes dpkg-buildpackage: info: source package seqkit dpkg-buildpackage: info: source version 2.9.0+ds-1 dpkg-buildpackage: info: source distribution unstable @@ -985,39 +1021,39 @@ dh_autoreconf -O--buildsystem=golang -O--builddirectory=build dh_auto_configure -O--buildsystem=golang -O--builddirectory=build dh_auto_build -O--buildsystem=golang -O--builddirectory=build - cd build && go install -trimpath -v -p 3 github.com/shenwei356/seqkit/benchmark github.com/shenwei356/seqkit/seqkit github.com/shenwei356/seqkit/seqkit/cmd + cd build && go install -trimpath -v -p 4 github.com/shenwei356/seqkit/benchmark github.com/shenwei356/seqkit/seqkit github.com/shenwei356/seqkit/seqkit/cmd internal/unsafeheader internal/goarch -internal/cpu internal/byteorder +internal/cpu +internal/coverage/rtcov internal/abi internal/chacha8rand -internal/bytealg -internal/coverage/rtcov internal/godebugs internal/goexperiment +internal/bytealg internal/goos internal/profilerecord internal/runtime/atomic internal/runtime/syscall internal/stringslite runtime/internal/math -internal/runtime/exithook runtime/internal/sys cmp internal/itoa internal/race math/bits unicode/utf8 +internal/runtime/exithook sync/atomic -math -runtime unicode +math internal/asan internal/msan log/internal internal/nettrace image/color +runtime internal/goversion internal/platform golang.org/x/image/math/f64 @@ -1035,19 +1071,20 @@ vendor/golang.org/x/crypto/cryptobyte/asn1 vendor/golang.org/x/crypto/internal/alias github.com/shenwei356/util/math -github.com/rivo/uniseg github.com/VividCortex/ewma +github.com/rivo/uniseg github.com/vbauerster/mpb/internal iter -internal/reflectlite -sync -slices internal/weak +sync +internal/reflectlite crypto/subtle +slices maps internal/bisect internal/testlog internal/singleflight +runtime/cgo errors sort strconv @@ -1061,156 +1098,155 @@ github.com/biogo/biogo/feat bytes bufio +vendor/golang.org/x/net/dns/dnsmessage time internal/syscall/unix internal/syscall/execenv -vendor/golang.org/x/net/dns/dnsmessage +math/rand/v2 +regexp/syntax +internal/concurrent io/fs internal/poll -internal/fmtsort internal/filepathlite -encoding/binary context os -math/rand/v2 -golang.org/x/sys/unix -internal/concurrent +internal/fmtsort +encoding/binary unique +regexp net/netip +golang.org/x/sys/unix +hash fmt -runtime/cgo +path/filepath +crypto +net +crypto/md5 +hash/crc32 +container/heap +image github.com/biogo/biogo/alphabet github.com/biogo/biogo/seq +log github.com/biogo/biogo/io/seqio github.com/biogo/biogo/io/seqio/fasta github.com/biogo/biogo/seq/linear -github.com/mattn/go-isatty -github.com/mattn/go-colorable -github.com/shenwei356/seqkit/benchmark -log -path/filepath -regexp/syntax -hash -crypto -crypto/md5 encoding/hex text/tabwriter +github.com/shenwei356/seqkit/benchmark github.com/biogo/biogo/align -regexp -net +github.com/mattn/go-isatty +github.com/mattn/go-colorable compress/flate -hash/crc32 -container/heap net/url -compress/gzip golang.org/x/term -github.com/biogo/hts/bgzf -golang.org/x/crypto/ssh/terminal golang.org/x/image/math/fixed -github.com/biogo/hts/bgzf/index -github.com/biogo/hts/internal -image -github.com/biogo/hts/sam +compress/gzip +golang.org/x/crypto/ssh/terminal image/internal/imageutil +github.com/biogo/hts/bgzf +go/token image/draw +go/scanner github.com/golang/freetype/raster -github.com/biogo/hts/bam +github.com/biogo/hts/bgzf/index +github.com/biogo/hts/internal golang.org/x/image/font -github.com/golang/freetype/truetype -go/token -go/scanner go/ast +github.com/biogo/hts/sam +github.com/golang/freetype/truetype +github.com/biogo/hts/bam go/build/constraint go/doc/comment internal/lazyregexp go/internal/typeparams -go/doc -go/parser internal/buildcfg +go/parser +go/doc os/exec -io/ioutil internal/goroot +io/ioutil +golang.org/x/image/draw go/build gonum.org/v1/plot/vg/fonts -log/syslog -golang.org/x/image/draw -gonum.org/v1/plot/vg -github.com/op/go-logging -gonum.org/v1/plot/vg/vgeps golang.org/x/image/font/basicfont +gonum.org/v1/plot/vg image/jpeg +log/syslog +gonum.org/v1/plot/vg/vgeps +github.com/op/go-logging hash/adler32 -compress/zlib -image/png golang.org/x/image/ccitt +compress/zlib golang.org/x/image/tiff/lzw +image/png golang.org/x/image/tiff crypto/rc4 crypto/cipher -internal/saferio crypto/internal/boring +internal/saferio encoding/gob crypto/sha1 +github.com/fogleman/gg encoding/base64 +encoding/xml encoding/json -github.com/fogleman/gg gonum.org/v1/plot/vg/vgimg -encoding/xml compress/lzw -math/rand image/gif +math/rand +github.com/ajstarks/svgo html runtime/debug gonum.org/v1/plot/palette -gonum.org/v1/plot/tools/bezier github.com/jung-kurt/gofpdf -github.com/ajstarks/svgo +gonum.org/v1/plot/vg/vgsvg +gonum.org/v1/plot/tools/bezier github.com/cespare/xxhash math/big -gonum.org/v1/plot/vg/vgsvg github.com/dsnet/compress/internal/errors +github.com/fsnotify/fsnotify/internal github.com/dsnet/compress github.com/dsnet/compress/internal/prefix -github.com/dsnet/compress/bzip2 -github.com/fsnotify/fsnotify/internal github.com/fsnotify/fsnotify -github.com/cznic/sortutil -github.com/dustin/go-humanize github.com/iafan/cwalk crypto/internal/randutil -crypto/rand +github.com/dsnet/compress/bzip2 github.com/klauspost/compress/fse github.com/klauspost/compress/internal/snapref -github.com/klauspost/compress/flate github.com/klauspost/compress/huff0 -gonum.org/v1/plot/vg/vgpdf -gonum.org/v1/plot/vg/draw +github.com/klauspost/compress/flate +github.com/cznic/sortutil +github.com/dustin/go-humanize +crypto/rand +github.com/logrusorgru/aurora github.com/klauspost/compress/zstd -gonum.org/v1/plot github.com/klauspost/pgzip -gonum.org/v1/plot/plotter -github.com/logrusorgru/aurora +gonum.org/v1/plot/vg/vgpdf github.com/mitchellh/go-homedir github.com/pkg/errors -gonum.org/v1/plot/plotutil crypto/sha256 github.com/ulikunitz/xz/internal/xlog -github.com/bsipos/thist +gonum.org/v1/plot/vg/draw hash/crc64 -github.com/ulikunitz/xz/lzma crypto/aes +github.com/ulikunitz/xz/lzma crypto/des +gonum.org/v1/plot crypto/internal/edwards25519/field crypto/internal/nistec/fiat +gonum.org/v1/plot/plotter +github.com/ulikunitz/xz crypto/internal/bigmod crypto/internal/boring/bbig crypto/sha512 -github.com/ulikunitz/xz encoding/asn1 crypto/internal/edwards25519 -vendor/golang.org/x/crypto/cryptobyte +gonum.org/v1/plot/plotutil +github.com/bsipos/thist crypto/ed25519 crypto/hmac +vendor/golang.org/x/crypto/cryptobyte vendor/golang.org/x/crypto/chacha20 vendor/golang.org/x/crypto/internal/poly1305 vendor/golang.org/x/crypto/hkdf @@ -1218,63 +1254,63 @@ vendor/golang.org/x/sys/cpu crypto/rsa vendor/golang.org/x/crypto/sha3 -crypto/internal/nistec crypto/dsa -crypto/internal/mlkem768 crypto/x509/pkix encoding/pem +crypto/internal/mlkem768 +crypto/internal/nistec vendor/golang.org/x/text/transform vendor/golang.org/x/text/unicode/bidi vendor/golang.org/x/text/unicode/norm -crypto/ecdh -crypto/elliptic -crypto/internal/hpke -vendor/golang.org/x/text/secure/bidirule -crypto/ecdsa net/textproto vendor/golang.org/x/net/http2/hpack -crypto/x509 +vendor/golang.org/x/text/secure/bidirule mime -vendor/golang.org/x/net/idna +crypto/ecdh +crypto/elliptic +crypto/internal/hpke mime/quotedprintable -mime/multipart -vendor/golang.org/x/net/http/httpguts -vendor/golang.org/x/net/http/httpproxy net/http/internal +mime/multipart +crypto/ecdsa net/http/internal/ascii os/user +vendor/golang.org/x/net/idna github.com/twotwotwo/sorts -crypto/tls +crypto/x509 github.com/twotwotwo/sorts/sortutil github.com/shenwei356/util/byteutil github.com/shenwei356/bio/seq +vendor/golang.org/x/net/http/httpguts +vendor/golang.org/x/net/http/httpproxy github.com/edsrzf/mmap-go github.com/shenwei356/bio/seqio/fai github.com/shenwei356/bio/util index/suffixarray -github.com/shenwei356/bwt -github.com/shenwei356/bwt/fmi github.com/mattn/go-runewidth github.com/shenwei356/stable +crypto/tls +github.com/shenwei356/bwt +github.com/shenwei356/bwt/fmi github.com/shenwei356/util/pathutil github.com/shenwei356/util/randutil github.com/shenwei356/natsort -github.com/shenwei356/util/stringutil gopkg.in/yaml.v2 +github.com/shenwei356/util/stringutil encoding/csv -net/http/httptrace flag -net/http -github.com/spf13/pflag -github.com/smallfish/simpleyaml text/template/parse +github.com/spf13/pflag text/template +github.com/smallfish/simpleyaml github.com/acarl005/stripansi github.com/vbauerster/mpb/cwriter github.com/vbauerster/mpb/decor -github.com/spf13/cobra -github.com/vbauerster/mpb os/signal +github.com/vbauerster/mpb +github.com/spf13/cobra +net/http/httptrace +net/http github.com/shenwei356/xopen github.com/shenwei356/breader github.com/shenwei356/bio/seqio/fastx @@ -1282,7 +1318,7 @@ github.com/shenwei356/seqkit/seqkit/cmd github.com/shenwei356/seqkit/seqkit dh_auto_test -O--buildsystem=golang -O--builddirectory=build - cd build && go test -vet=off -v -p 3 github.com/shenwei356/seqkit/benchmark github.com/shenwei356/seqkit/seqkit github.com/shenwei356/seqkit/seqkit/cmd + cd build && go test -vet=off -v -p 4 github.com/shenwei356/seqkit/benchmark github.com/shenwei356/seqkit/seqkit github.com/shenwei356/seqkit/seqkit/cmd ? github.com/shenwei356/seqkit/benchmark [no test files] ? github.com/shenwei356/seqkit/seqkit [no test files] ? github.com/shenwei356/seqkit/seqkit/cmd [no test files] @@ -1337,12 +1373,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/30189/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/30189/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/6057 and its subdirectories -I: Current time: Sat Jan 11 01:08:38 -12 2025 -I: pbuilder-time-stamp: 1736600918 +I: removing directory /srv/workspace/pbuilder/30189 and its subdirectories +I: Current time: Sun Jan 12 03:16:09 +14 2025 +I: pbuilder-time-stamp: 1736601369