Diff of the two buildlogs: -- --- b1/build.log 2024-04-04 22:08:42.432634740 +0000 +++ b2/build.log 2024-04-04 22:16:28.224788240 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Apr 4 10:04:22 -12 2024 -I: pbuilder-time-stamp: 1712268262 +I: Current time: Fri Apr 5 12:09:09 +14 2024 +I: pbuilder-time-stamp: 1712268549 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -29,52 +29,84 @@ dpkg-source: info: applying remove-arch-check.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/15382/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/31259/tmp/hooks/D01_modify_environment starting +debug: Running on virt64c. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 4 22:09 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/31259/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/31259/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='7637c090ac8b423f9f2304b083c20438' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='15382' - PS1='# ' - PS2='> ' + INVOCATION_ID=c0336d0f40e2433da674480d2f420c38 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=31259 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.I6ZDrmy2/pbuilderrc_MvsO --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.I6ZDrmy2/b1 --logfile b1/build.log savvy_2.1.0-2.dsc' - SUDO_GID='110' - SUDO_UID='103' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.I6ZDrmy2/pbuilderrc_0dIL --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.I6ZDrmy2/b2 --logfile b2/build.log savvy_2.1.0-2.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux virt32z 6.1.0-18-armmp-lpae #1 SMP Debian 6.1.76-1 (2024-02-01) armv7l GNU/Linux + Linux i-capture-the-hostname 6.1.0-18-arm64 #1 SMP Debian 6.1.76-1 (2024-02-01) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Apr 2 07:43 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/15382/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Apr 1 07:44 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/31259/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -172,7 +204,7 @@ Get: 52 http://deb.debian.org/debian unstable/main armhf libshrinkwrap-dev all 1.2.0-2 [12.3 kB] Get: 53 http://deb.debian.org/debian unstable/main armhf libzstd-dev armhf 1.5.5+dfsg2-2 [322 kB] Get: 54 http://deb.debian.org/debian unstable/main armhf zlib1g-dev armhf 1:1.3.dfsg-3.1 [904 kB] -Fetched 30.1 MB in 1s (32.4 MB/s) +Fetched 30.1 MB in 1s (28.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19466 files and directories currently installed.) @@ -403,7 +435,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/savvy-2.1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../savvy_2.1.0-2_source.changes +I: user script /srv/workspace/pbuilder/31259/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/31259/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/savvy-2.1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../savvy_2.1.0-2_source.changes dpkg-buildpackage: info: source package savvy dpkg-buildpackage: info: source version 2.1.0-2 dpkg-buildpackage: info: source distribution unstable @@ -442,8 +478,8 @@ -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE --- Configuring done (1.9s) --- Generating done (0.0s) +-- Configuring done (4.6s) +-- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -454,7 +490,7 @@ -- Build files have been written to: /build/reproducible-path/savvy-2.1.0/obj-arm-linux-gnueabihf dh_auto_build - cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/savvy-2.1.0/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/savvy-2.1.0 -B/build/reproducible-path/savvy-2.1.0/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/savvy-2.1.0/obj-arm-linux-gnueabihf/CMakeFiles /build/reproducible-path/savvy-2.1.0/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks @@ -471,20 +507,29 @@ [ 16%] Building CXX object CMakeFiles/sav.dir/src/sav/concat.cpp.o [ 25%] Building CXX object CMakeFiles/sav.dir/src/sav/export.cpp.o /usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -I/build/reproducible-path/savvy-2.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -MD -MT CMakeFiles/sav.dir/src/sav/concat.cpp.o -MF CMakeFiles/sav.dir/src/sav/concat.cpp.o.d -o CMakeFiles/sav.dir/src/sav/concat.cpp.o -c /build/reproducible-path/savvy-2.1.0/src/sav/concat.cpp +[ 33%] Building CXX object CMakeFiles/sav.dir/src/sav/head.cpp.o /usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -I/build/reproducible-path/savvy-2.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -MD -MT CMakeFiles/sav.dir/src/sav/export.cpp.o -MF CMakeFiles/sav.dir/src/sav/export.cpp.o.d -o CMakeFiles/sav.dir/src/sav/export.cpp.o -c /build/reproducible-path/savvy-2.1.0/src/sav/export.cpp +/usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -I/build/reproducible-path/savvy-2.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -MD -MT CMakeFiles/sav.dir/src/sav/head.cpp.o -MF CMakeFiles/sav.dir/src/sav/head.cpp.o.d -o CMakeFiles/sav.dir/src/sav/head.cpp.o -c /build/reproducible-path/savvy-2.1.0/src/sav/head.cpp In file included from /build/reproducible-path/savvy-2.1.0/src/sav/concat.cpp:9: /build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp: In member function ‘std::vector > savvy::reader::subset_samples(const std::unordered_set >&)’: /build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp:292:78: warning: conversion from ‘long long unsigned int’ to ‘std::vector::value_type’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 292 | subset_map_.resize(ids_.size(), std::numeric_limits::max()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ +In file included from /build/reproducible-path/savvy-2.1.0/src/sav/head.cpp:8: +/build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp: In member function ‘std::vector > savvy::reader::subset_samples(const std::unordered_set >&)’: +/build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp:292:78: warning: conversion from ‘long long unsigned int’ to ‘std::vector::value_type’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] + 292 | subset_map_.resize(ids_.size(), std::numeric_limits::max()); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ +[ 41%] Building CXX object CMakeFiles/sav.dir/src/sav/import.cpp.o +/usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -I/build/reproducible-path/savvy-2.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -MD -MT CMakeFiles/sav.dir/src/sav/import.cpp.o -MF CMakeFiles/sav.dir/src/sav/import.cpp.o.d -o CMakeFiles/sav.dir/src/sav/import.cpp.o -c /build/reproducible-path/savvy-2.1.0/src/sav/import.cpp In file included from /build/reproducible-path/savvy-2.1.0/src/sav/export.cpp:15: /build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp: In member function ‘std::vector > savvy::reader::subset_samples(const std::unordered_set >&)’: /build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp:292:78: warning: conversion from ‘long long unsigned int’ to ‘std::vector::value_type’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 292 | subset_map_.resize(ids_.size(), std::numeric_limits::max()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ -[ 33%] Building CXX object CMakeFiles/sav.dir/src/sav/head.cpp.o -/usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -I/build/reproducible-path/savvy-2.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -MD -MT CMakeFiles/sav.dir/src/sav/head.cpp.o -MF CMakeFiles/sav.dir/src/sav/head.cpp.o.d -o CMakeFiles/sav.dir/src/sav/head.cpp.o -c /build/reproducible-path/savvy-2.1.0/src/sav/head.cpp -In file included from /build/reproducible-path/savvy-2.1.0/src/sav/head.cpp:8: +[ 50%] Building CXX object CMakeFiles/sav.dir/src/sav/index.cpp.o +/usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -I/build/reproducible-path/savvy-2.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -MD -MT CMakeFiles/sav.dir/src/sav/index.cpp.o -MF CMakeFiles/sav.dir/src/sav/index.cpp.o.d -o CMakeFiles/sav.dir/src/sav/index.cpp.o -c /build/reproducible-path/savvy-2.1.0/src/sav/index.cpp +In file included from /build/reproducible-path/savvy-2.1.0/src/sav/index.cpp:9: /build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp: In member function ‘std::vector > savvy::reader::subset_samples(const std::unordered_set >&)’: /build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp:292:78: warning: conversion from ‘long long unsigned int’ to ‘std::vector::value_type’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 292 | subset_map_.resize(ids_.size(), std::numeric_limits::max()); @@ -492,6 +537,93 @@ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/savvy-2.1.0/include/savvy/compressed_vector.hpp:10, from /build/reproducible-path/savvy-2.1.0/include/savvy/site_info.hpp:10, + from /build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp:10: +/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’: +/usr/include/c++/13/bits/vector.tcc:133:5: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 + 133 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/vector.tcc:170:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 + 170 | _M_realloc_insert(begin() + (__position - cbegin()), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {savvy::s1r::reader::init()::tree_details}; _Tp = savvy::s1r::reader::init()::tree_details; _Alloc = std::allocator]’: +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, std::__cxx11::basic_string, std::allocator >&, long long unsigned int&}; _Tp = savvy::s1r::tree_reader; _Alloc = std::allocator]’: +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 +In file included from /build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp:14: +In constructor ‘savvy::s1r::tree_base::tree_base(std::streampos, uint8_t, uint64_t, uint64_t)’, + inlined from ‘savvy::s1r::tree_reader::tree_reader(std::ifstream&, std::streampos, uint8_t, uint64_t, const std::string&, uint64_t)’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:455:19, + inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = savvy::s1r::tree_reader; _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, std::__cxx11::basic_string, std::allocator >&, long long unsigned int&}; _Tp = savvy::s1r::tree_reader]’ at /usr/include/c++/13/bits/new_allocator.h:191:4, + inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = savvy::s1r::tree_reader; _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, std::__cxx11::basic_string, std::allocator >&, long long unsigned int&}; _Tp = savvy::s1r::tree_reader]’ at /usr/include/c++/13/bits/alloc_traits.h:538:17, + inlined from ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, std::__cxx11::basic_string, std::allocator >&, long long unsigned int&}; _Tp = savvy::s1r::tree_reader; _Alloc = std::allocator]’ at /usr/include/c++/13/bits/vector.tcc:468:28: +/build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:139:45: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 + 139 | this->entry_counts_per_level_.insert(this->entry_counts_per_level_.begin(), entry_count_); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:145:47: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 + 145 | this->entry_counts_per_level_.insert(this->entry_counts_per_level_.begin(), nodes_at_current_level); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, const char (&)[1], int}; _Tp = savvy::s1r::tree_reader; _Alloc = std::allocator]’: +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In constructor ‘savvy::s1r::tree_base::tree_base(std::streampos, uint8_t, uint64_t, uint64_t)’, + inlined from ‘savvy::s1r::tree_reader::tree_reader(std::ifstream&, std::streampos, uint8_t, uint64_t, const std::string&, uint64_t)’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:455:19, + inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = savvy::s1r::tree_reader; _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, const char (&)[1], int}; _Tp = savvy::s1r::tree_reader]’ at /usr/include/c++/13/bits/new_allocator.h:191:4, + inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = savvy::s1r::tree_reader; _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, const char (&)[1], int}; _Tp = savvy::s1r::tree_reader]’ at /usr/include/c++/13/bits/alloc_traits.h:538:17, + inlined from ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, const char (&)[1], int}; _Tp = savvy::s1r::tree_reader; _Alloc = std::allocator]’ at /usr/include/c++/13/bits/vector.tcc:468:28: +/build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:139:45: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 + 139 | this->entry_counts_per_level_.insert(this->entry_counts_per_level_.begin(), entry_count_); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:145:47: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 + 145 | this->entry_counts_per_level_.insert(this->entry_counts_per_level_.begin(), nodes_at_current_level); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {savvy::s1r::reader::init()::tree_details}; _Tp = savvy::s1r::reader::init()::tree_details; _Alloc = std::allocator]’, + inlined from ‘void savvy::s1r::reader::init()’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:650:46: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In constructor ‘savvy::s1r::tree_base::tree_base(std::streampos, uint8_t, uint64_t, uint64_t)’, + inlined from ‘savvy::s1r::tree_reader::tree_reader(std::ifstream&, std::streampos, uint8_t, uint64_t, const std::string&, uint64_t)’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:455:19, + inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = savvy::s1r::tree_reader; _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, std::__cxx11::basic_string, std::allocator >&, long long unsigned int&}; _Tp = savvy::s1r::tree_reader]’ at /usr/include/c++/13/bits/new_allocator.h:191:4, + inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = savvy::s1r::tree_reader; _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, std::__cxx11::basic_string, std::allocator >&, long long unsigned int&}; _Tp = savvy::s1r::tree_reader]’ at /usr/include/c++/13/bits/alloc_traits.h:538:17, + inlined from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, std::__cxx11::basic_string, std::allocator >&, long long unsigned int&}; _Tp = savvy::s1r::tree_reader; _Alloc = std::allocator]’ at /usr/include/c++/13/bits/vector.tcc:117:30, + inlined from ‘void savvy::s1r::reader::init()’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:674:34: +/build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:139:45: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 + 139 | this->entry_counts_per_level_.insert(this->entry_counts_per_level_.begin(), entry_count_); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:145:47: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 + 145 | this->entry_counts_per_level_.insert(this->entry_counts_per_level_.begin(), nodes_at_current_level); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, std::__cxx11::basic_string, std::allocator >&, long long unsigned int&}; _Tp = savvy::s1r::tree_reader; _Alloc = std::allocator]’, + inlined from ‘void savvy::s1r::reader::init()’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:674:34: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In constructor ‘savvy::s1r::tree_base::tree_base(std::streampos, uint8_t, uint64_t, uint64_t)’, + inlined from ‘savvy::s1r::tree_reader::tree_reader(std::ifstream&, std::streampos, uint8_t, uint64_t, const std::string&, uint64_t)’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:455:19, + inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = savvy::s1r::tree_reader; _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, const char (&)[1], int}; _Tp = savvy::s1r::tree_reader]’ at /usr/include/c++/13/bits/new_allocator.h:191:4, + inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = savvy::s1r::tree_reader; _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, const char (&)[1], int}; _Tp = savvy::s1r::tree_reader]’ at /usr/include/c++/13/bits/alloc_traits.h:538:17, + inlined from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, const char (&)[1], int}; _Tp = savvy::s1r::tree_reader; _Alloc = std::allocator]’ at /usr/include/c++/13/bits/vector.tcc:117:30, + inlined from ‘void savvy::s1r::reader::init()’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:678:28: +/build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:139:45: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 + 139 | this->entry_counts_per_level_.insert(this->entry_counts_per_level_.begin(), entry_count_); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:145:47: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 + 145 | this->entry_counts_per_level_.insert(this->entry_counts_per_level_.begin(), nodes_at_current_level); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, const char (&)[1], int}; _Tp = savvy::s1r::tree_reader; _Alloc = std::allocator]’, + inlined from ‘void savvy::s1r::reader::init()’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:678:28: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/13/vector:72, + from /build/reproducible-path/savvy-2.1.0/include/savvy/compressed_vector.hpp:10, + from /build/reproducible-path/savvy-2.1.0/include/savvy/site_info.hpp:10, from /build/reproducible-path/savvy-2.1.0/include/savvy/region.hpp:10, from /build/reproducible-path/savvy-2.1.0/include/sav/utility.hpp:10, from /build/reproducible-path/savvy-2.1.0/src/sav/concat.cpp:8: @@ -603,10 +735,38 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 58%] Building CXX object CMakeFiles/sav.dir/src/sav/merge.cpp.o +/usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -I/build/reproducible-path/savvy-2.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -MD -MT CMakeFiles/sav.dir/src/sav/merge.cpp.o -MF CMakeFiles/sav.dir/src/sav/merge.cpp.o.d -o CMakeFiles/sav.dir/src/sav/merge.cpp.o -c /build/reproducible-path/savvy-2.1.0/src/sav/merge.cpp +[ 66%] Building CXX object CMakeFiles/sav.dir/src/sav/rehead.cpp.o +/usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -I/build/reproducible-path/savvy-2.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -MD -MT CMakeFiles/sav.dir/src/sav/rehead.cpp.o -MF CMakeFiles/sav.dir/src/sav/rehead.cpp.o.d -o CMakeFiles/sav.dir/src/sav/rehead.cpp.o -c /build/reproducible-path/savvy-2.1.0/src/sav/rehead.cpp +In file included from /usr/include/c++/13/bits/stl_algo.h:61, + from /usr/include/c++/13/algorithm:61, + from /build/reproducible-path/savvy-2.1.0/include/savvy/compressed_vector.hpp:11, + from /build/reproducible-path/savvy-2.1.0/include/savvy/site_info.hpp:10, + from /build/reproducible-path/savvy-2.1.0/include/savvy/region.hpp:10, + from /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:11, + from /build/reproducible-path/savvy-2.1.0/include/savvy/sav_reader.hpp:12, + from /build/reproducible-path/savvy-2.1.0/include/sav/sort.hpp:10, + from /build/reproducible-path/savvy-2.1.0/src/sav/export.cpp:9: +/usr/include/c++/13/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, unsigned int>&, int64_t, int64_t)::&, const pair&)> >]’: +/usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 + 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, + | ^~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter, unsigned int>&, int64_t, int64_t)::&, const pair&)> >]’: +/usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 + 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, unsigned int>&, int64_t, int64_t)::&, const pair&)> >]’: +/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 + 1812 | __insertion_sort(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/savvy-2.1.0/include/savvy/compressed_vector.hpp:10, from /build/reproducible-path/savvy-2.1.0/include/savvy/site_info.hpp:10, - from /build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp:10: + from /build/reproducible-path/savvy-2.1.0/include/savvy/region.hpp:10, + from /build/reproducible-path/savvy-2.1.0/include/sav/utility.hpp:10, + from /build/reproducible-path/savvy-2.1.0/src/sav/index.cpp:8: /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: @@ -622,9 +782,43 @@ /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const savvy::s1r::entry&}; _Tp = savvy::s1r::entry; _Alloc = std::allocator]’: +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 +In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const savvy::s1r::entry&}; _Tp = savvy::s1r::entry; _Alloc = std::allocator]’, + inlined from ‘savvy::s1r::writer& savvy::s1r::writer::write(const std::string&, const savvy::s1r::entry&)’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:857:40, + inlined from ‘int concat_main(int, char**)’ at /build/reproducible-path/savvy-2.1.0/src/sav/concat.cpp:234:30: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair >, savvy::s1r::tree_base::tree_position>}; _Tp = std::pair, savvy::s1r::tree_base::tree_position>; _Alloc = std::allocator, savvy::s1r::tree_base::tree_position> >]’: +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector, savvy::s1r::tree_base::tree_position> >::iterator’ changed in GCC 7.1 +In file included from /build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp:14: +In constructor ‘savvy::s1r::tree_base::tree_base(std::streampos, uint8_t, uint64_t, uint64_t)’, + inlined from ‘void savvy::s1r::writer::write_internal_nodes()’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:883:173: +/build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:139:45: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 + 139 | this->entry_counts_per_level_.insert(this->entry_counts_per_level_.begin(), entry_count_); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:145:47: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 + 145 | this->entry_counts_per_level_.insert(this->entry_counts_per_level_.begin(), nodes_at_current_level); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair >, savvy::s1r::tree_base::tree_position>}; _Tp = std::pair, savvy::s1r::tree_base::tree_position>; _Alloc = std::allocator, savvy::s1r::tree_base::tree_position> >]’, + inlined from ‘void savvy::s1r::writer::write_internal_nodes()’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:888:60: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, savvy::s1r::tree_base::tree_position>*, std::vector, savvy::s1r::tree_base::tree_position> > >’ changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/savvy-2.1.0/src/sav/rehead.cpp:9: +/build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp: In member function ‘std::vector > savvy::reader::subset_samples(const std::unordered_set >&)’: +/build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp:292:78: warning: conversion from ‘long long unsigned int’ to ‘std::vector::value_type’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] + 292 | subset_map_.resize(ids_.size(), std::numeric_limits::max()); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ +/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {savvy::s1r::entry}; _Tp = savvy::s1r::entry; _Alloc = std::allocator]’: +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +[ 75%] Building CXX object CMakeFiles/sav.dir/src/sav/sort.cpp.o +/usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -I/build/reproducible-path/savvy-2.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -MD -MT CMakeFiles/sav.dir/src/sav/sort.cpp.o -MF CMakeFiles/sav.dir/src/sav/sort.cpp.o.d -o CMakeFiles/sav.dir/src/sav/sort.cpp.o -c /build/reproducible-path/savvy-2.1.0/src/sav/sort.cpp /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, std::__cxx11::basic_string, std::allocator >&, long long unsigned int&}; _Tp = savvy::s1r::tree_reader; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 -In file included from /build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp:14: In constructor ‘savvy::s1r::tree_base::tree_base(std::streampos, uint8_t, uint64_t, uint64_t)’, inlined from ‘savvy::s1r::tree_reader::tree_reader(std::ifstream&, std::streampos, uint8_t, uint64_t, const std::string&, uint64_t)’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:455:19, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = savvy::s1r::tree_reader; _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, std::__cxx11::basic_string, std::allocator >&, long long unsigned int&}; _Tp = savvy::s1r::tree_reader]’ at /usr/include/c++/13/bits/new_allocator.h:191:4, @@ -690,52 +884,6 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const savvy::s1r::entry&}; _Tp = savvy::s1r::entry; _Alloc = std::allocator]’, - inlined from ‘savvy::s1r::writer& savvy::s1r::writer::write(const std::string&, const savvy::s1r::entry&)’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:857:40, - inlined from ‘int concat_main(int, char**)’ at /build/reproducible-path/savvy-2.1.0/src/sav/concat.cpp:234:30: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/bits/stl_algo.h:61, - from /usr/include/c++/13/algorithm:61, - from /build/reproducible-path/savvy-2.1.0/include/savvy/compressed_vector.hpp:11, - from /build/reproducible-path/savvy-2.1.0/include/savvy/site_info.hpp:10, - from /build/reproducible-path/savvy-2.1.0/include/savvy/region.hpp:10, - from /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:11, - from /build/reproducible-path/savvy-2.1.0/include/savvy/sav_reader.hpp:12, - from /build/reproducible-path/savvy-2.1.0/include/sav/sort.hpp:10, - from /build/reproducible-path/savvy-2.1.0/src/sav/export.cpp:9: -/usr/include/c++/13/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, unsigned int>&, int64_t, int64_t)::&, const pair&)> >]’: -/usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 - 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, - | ^~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter, unsigned int>&, int64_t, int64_t)::&, const pair&)> >]’: -/usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 - 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, unsigned int>&, int64_t, int64_t)::&, const pair&)> >]’: -/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 - 1812 | __insertion_sort(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 -[ 41%] Building CXX object CMakeFiles/sav.dir/src/sav/import.cpp.o -/usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -I/build/reproducible-path/savvy-2.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -MD -MT CMakeFiles/sav.dir/src/sav/import.cpp.o -MF CMakeFiles/sav.dir/src/sav/import.cpp.o.d -o CMakeFiles/sav.dir/src/sav/import.cpp.o -c /build/reproducible-path/savvy-2.1.0/src/sav/import.cpp -[ 50%] Building CXX object CMakeFiles/sav.dir/src/sav/index.cpp.o -/usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -I/build/reproducible-path/savvy-2.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -MD -MT CMakeFiles/sav.dir/src/sav/index.cpp.o -MF CMakeFiles/sav.dir/src/sav/index.cpp.o.d -o CMakeFiles/sav.dir/src/sav/index.cpp.o -c /build/reproducible-path/savvy-2.1.0/src/sav/index.cpp -[ 58%] Building CXX object CMakeFiles/sav.dir/src/sav/merge.cpp.o -/usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -I/build/reproducible-path/savvy-2.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -MD -MT CMakeFiles/sav.dir/src/sav/merge.cpp.o -MF CMakeFiles/sav.dir/src/sav/merge.cpp.o.d -o CMakeFiles/sav.dir/src/sav/merge.cpp.o -c /build/reproducible-path/savvy-2.1.0/src/sav/merge.cpp -[ 66%] Building CXX object CMakeFiles/sav.dir/src/sav/rehead.cpp.o -/usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -I/build/reproducible-path/savvy-2.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -MD -MT CMakeFiles/sav.dir/src/sav/rehead.cpp.o -MF CMakeFiles/sav.dir/src/sav/rehead.cpp.o.d -o CMakeFiles/sav.dir/src/sav/rehead.cpp.o -c /build/reproducible-path/savvy-2.1.0/src/sav/rehead.cpp -In file included from /build/reproducible-path/savvy-2.1.0/src/sav/index.cpp:9: -/build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp: In member function ‘std::vector > savvy::reader::subset_samples(const std::unordered_set >&)’: -/build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp:292:78: warning: conversion from ‘long long unsigned int’ to ‘std::vector::value_type’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] - 292 | subset_map_.resize(ids_.size(), std::numeric_limits::max()); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ -In file included from /build/reproducible-path/savvy-2.1.0/src/sav/rehead.cpp:9: -/build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp: In member function ‘std::vector > savvy::reader::subset_samples(const std::unordered_set >&)’: -/build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp:292:78: warning: conversion from ‘long long unsigned int’ to ‘std::vector::value_type’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] - 292 | subset_map_.resize(ids_.size(), std::numeric_limits::max()); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/savvy-2.1.0/include/savvy/compressed_vector.hpp:10: /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: @@ -765,6 +913,11 @@ | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair >, savvy::s1r::tree_base::tree_position>}; _Tp = std::pair, savvy::s1r::tree_base::tree_position>; _Alloc = std::allocator, savvy::s1r::tree_base::tree_position> >]’: /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector, savvy::s1r::tree_base::tree_position> >::iterator’ changed in GCC 7.1 +In file included from /build/reproducible-path/savvy-2.1.0/src/sav/sort.cpp:8: +/build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp: In member function ‘std::vector > savvy::reader::subset_samples(const std::unordered_set >&)’: +/build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp:292:78: warning: conversion from ‘long long unsigned int’ to ‘std::vector::value_type’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] + 292 | subset_map_.resize(ids_.size(), std::numeric_limits::max()); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In constructor ‘savvy::s1r::tree_base::tree_base(std::streampos, uint8_t, uint64_t, uint64_t)’, inlined from ‘void savvy::s1r::writer::write_internal_nodes()’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:883:173: /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:139:45: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 @@ -787,16 +940,6 @@ /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {savvy::genomic_region}; _Tp = savvy::genomic_region; _Alloc = std::allocator]’: -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 -/usr/include/c++/13/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, unsigned int>&, int64_t, int64_t)::&, const pair&)> >]’: -/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 - 1918 | __introsort_loop(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 -/usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 - 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/savvy-2.1.0/include/savvy/compressed_vector.hpp:10, from /build/reproducible-path/savvy-2.1.0/include/savvy/site_info.hpp:10, @@ -818,16 +961,8 @@ /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {savvy::genomic_region}; _Tp = savvy::genomic_region; _Alloc = std::allocator]’, - inlined from ‘bool export_prog_args::parse(int, char**)’ at /build/reproducible-path/savvy-2.1.0/src/sav/export.cpp:372:32: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {savvy::genomic_region}; _Tp = savvy::genomic_region; _Alloc = std::allocator]’, - inlined from ‘bool export_prog_args::parse(int, char**)’ at /build/reproducible-path/savvy-2.1.0/src/sav/export.cpp:386:32: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {savvy::genomic_region}; _Tp = savvy::genomic_region; _Alloc = std::allocator]’: +/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const savvy::s1r::entry&}; _Tp = savvy::s1r::entry; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair >, savvy::s1r::tree_base::tree_position>}; _Tp = std::pair, savvy::s1r::tree_base::tree_position>; _Alloc = std::allocator, savvy::s1r::tree_base::tree_position> >]’: @@ -846,36 +981,19 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, savvy::s1r::tree_base::tree_position>*, std::vector, savvy::s1r::tree_base::tree_position> > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int&, long long unsigned int&}; _Tp = std::pair; _Alloc = std::allocator >]’, - inlined from ‘std::vector > savvy::csi_index::query_intervals(const std::string&, const std::unordered_map, unsigned int>&, int64_t, int64_t)’ at /build/reproducible-path/savvy-2.1.0/include/savvy/csi.hpp:312:33: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, unsigned int>&, int64_t, int64_t)::&, const pair&)> >]’, - inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = savvy::csi_index::query_intervals(const std::string&, const std::unordered_map, unsigned int>&, int64_t, int64_t)::&, const pair&)>]’ at /usr/include/c++/13/bits/stl_algo.h:4894:18, - inlined from ‘std::vector > savvy::csi_index::query_intervals(const std::string&, const std::unordered_map, unsigned int>&, int64_t, int64_t)’ at /build/reproducible-path/savvy-2.1.0/include/savvy/csi.hpp:332:18: -/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 - 1947 | std::__introsort_loop(__first, __last, - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - 1948 | std::__lg(__last - __first) * 2, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1949 | __comp); - | ~~~~~~~ -In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, unsigned int>&, int64_t, int64_t)::&, const pair&)> >]’, - inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, unsigned int>&, int64_t, int64_t)::&, const pair&)> >]’ at /usr/include/c++/13/bits/stl_algo.h:1950:31, - inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = savvy::csi_index::query_intervals(const std::string&, const std::unordered_map, unsigned int>&, int64_t, int64_t)::&, const pair&)>]’ at /usr/include/c++/13/bits/stl_algo.h:4894:18, - inlined from ‘std::vector > savvy::csi_index::query_intervals(const std::string&, const std::unordered_map, unsigned int>&, int64_t, int64_t)’ at /build/reproducible-path/savvy-2.1.0/include/savvy/csi.hpp:332:18: -/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 - 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 - 1864 | std::__insertion_sort(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const savvy::s1r::entry&}; _Tp = savvy::s1r::entry; _Alloc = std::allocator]’, inlined from ‘savvy::s1r::writer& savvy::s1r::writer::write(const std::string&, const savvy::s1r::entry&)’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:857:40: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, unsigned int>&, int64_t, int64_t)::&, const pair&)> >]’: +/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 + 1918 | __introsort_loop(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 +/usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 + 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, std::__cxx11::basic_string, std::allocator >&, long long unsigned int&}; _Tp = savvy::s1r::tree_reader; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: @@ -883,7 +1001,7 @@ In constructor ‘savvy::s1r::tree_base::tree_base(std::streampos, uint8_t, uint64_t, uint64_t)’, inlined from ‘savvy::s1r::tree_reader::tree_reader(std::ifstream&, std::streampos, uint8_t, uint64_t, const std::string&, uint64_t)’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:455:19, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = savvy::s1r::tree_reader; _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, std::__cxx11::basic_string, std::allocator >&, long long unsigned int&}; _Tp = savvy::s1r::tree_reader]’ at /usr/include/c++/13/bits/new_allocator.h:191:4, - inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = savvy::s1r::tree_reader; _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, std::__cxx11::basic_string, std::allocator >&, long long unsigned int&}; _Tp = savvy::s1r::tree_reader]’ at /usr/include/c++/13/bits/alloc_traits.h:538:17, + inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = savvy::s1r::tree_reader; _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, std::__cxx11::basic_string, std::allocator >&, long long unsigned int&}; _Tp = savvy::s1r::tree_reader]’ at /usr/include/c++/13/bits/alloc_traits.h:538:17, inlined from ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, std::__cxx11::basic_string, std::allocator >&, long long unsigned int&}; _Tp = savvy::s1r::tree_reader; _Alloc = std::allocator]’ at /usr/include/c++/13/bits/vector.tcc:468:28: /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:139:45: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 139 | this->entry_counts_per_level_.insert(this->entry_counts_per_level_.begin(), entry_count_); @@ -898,7 +1016,7 @@ In constructor ‘savvy::s1r::tree_base::tree_base(std::streampos, uint8_t, uint64_t, uint64_t)’, inlined from ‘savvy::s1r::tree_reader::tree_reader(std::ifstream&, std::streampos, uint8_t, uint64_t, const std::string&, uint64_t)’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:455:19, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = savvy::s1r::tree_reader; _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, const char (&)[1], int}; _Tp = savvy::s1r::tree_reader]’ at /usr/include/c++/13/bits/new_allocator.h:191:4, - inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = savvy::s1r::tree_reader; _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, const char (&)[1], int}; _Tp = savvy::s1r::tree_reader]’ at /usr/include/c++/13/bits/alloc_traits.h:538:17, + inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = savvy::s1r::tree_reader; _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, const char (&)[1], int}; _Tp = savvy::s1r::tree_reader]’ at /usr/include/c++/13/bits/alloc_traits.h:538:17, inlined from ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, const char (&)[1], int}; _Tp = savvy::s1r::tree_reader; _Alloc = std::allocator]’ at /usr/include/c++/13/bits/vector.tcc:468:28: /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:139:45: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 139 | this->entry_counts_per_level_.insert(this->entry_counts_per_level_.begin(), entry_count_); @@ -906,21 +1024,6 @@ /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:145:47: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 145 | this->entry_counts_per_level_.insert(this->entry_counts_per_level_.begin(), nodes_at_current_level); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, std::__cxx11::basic_string, std::allocator >&, long long unsigned int&}; _Tp = savvy::s1r::tree_reader; _Alloc = std::allocator]’: -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In constructor ‘savvy::s1r::tree_base::tree_base(std::streampos, uint8_t, uint64_t, uint64_t)’, - inlined from ‘savvy::s1r::tree_reader::tree_reader(std::ifstream&, std::streampos, uint8_t, uint64_t, const std::string&, uint64_t)’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:455:19, - inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = savvy::s1r::tree_reader; _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, std::__cxx11::basic_string, std::allocator >&, long long unsigned int&}; _Tp = savvy::s1r::tree_reader]’ at /usr/include/c++/13/bits/new_allocator.h:191:4, - inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = savvy::s1r::tree_reader; _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, std::__cxx11::basic_string, std::allocator >&, long long unsigned int&}; _Tp = savvy::s1r::tree_reader]’ at /usr/include/c++/13/bits/alloc_traits.h:538:17, - inlined from ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, std::__cxx11::basic_string, std::allocator >&, long long unsigned int&}; _Tp = savvy::s1r::tree_reader; _Alloc = std::allocator]’ at /usr/include/c++/13/bits/vector.tcc:468:28: -/build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:139:45: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 - 139 | this->entry_counts_per_level_.insert(this->entry_counts_per_level_.begin(), entry_count_); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:145:47: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 - 145 | this->entry_counts_per_level_.insert(this->entry_counts_per_level_.begin(), nodes_at_current_level); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {savvy::s1r::reader::init()::tree_details}; _Tp = savvy::s1r::reader::init()::tree_details; _Alloc = std::allocator]’, inlined from ‘void savvy::s1r::reader::init()’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:650:46: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 @@ -929,7 +1032,7 @@ In constructor ‘savvy::s1r::tree_base::tree_base(std::streampos, uint8_t, uint64_t, uint64_t)’, inlined from ‘savvy::s1r::tree_reader::tree_reader(std::ifstream&, std::streampos, uint8_t, uint64_t, const std::string&, uint64_t)’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:455:19, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = savvy::s1r::tree_reader; _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, std::__cxx11::basic_string, std::allocator >&, long long unsigned int&}; _Tp = savvy::s1r::tree_reader]’ at /usr/include/c++/13/bits/new_allocator.h:191:4, - inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = savvy::s1r::tree_reader; _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, std::__cxx11::basic_string, std::allocator >&, long long unsigned int&}; _Tp = savvy::s1r::tree_reader]’ at /usr/include/c++/13/bits/alloc_traits.h:538:17, + inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = savvy::s1r::tree_reader; _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, std::__cxx11::basic_string, std::allocator >&, long long unsigned int&}; _Tp = savvy::s1r::tree_reader]’ at /usr/include/c++/13/bits/alloc_traits.h:538:17, inlined from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, std::__cxx11::basic_string, std::allocator >&, long long unsigned int&}; _Tp = savvy::s1r::tree_reader; _Alloc = std::allocator]’ at /usr/include/c++/13/bits/vector.tcc:117:30, inlined from ‘void savvy::s1r::reader::init()’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:674:34: /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:139:45: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 @@ -946,7 +1049,7 @@ In constructor ‘savvy::s1r::tree_base::tree_base(std::streampos, uint8_t, uint64_t, uint64_t)’, inlined from ‘savvy::s1r::tree_reader::tree_reader(std::ifstream&, std::streampos, uint8_t, uint64_t, const std::string&, uint64_t)’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:455:19, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = savvy::s1r::tree_reader; _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, const char (&)[1], int}; _Tp = savvy::s1r::tree_reader]’ at /usr/include/c++/13/bits/new_allocator.h:191:4, - inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = savvy::s1r::tree_reader; _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, const char (&)[1], int}; _Tp = savvy::s1r::tree_reader]’ at /usr/include/c++/13/bits/alloc_traits.h:538:17, + inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = savvy::s1r::tree_reader; _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, const char (&)[1], int}; _Tp = savvy::s1r::tree_reader]’ at /usr/include/c++/13/bits/alloc_traits.h:538:17, inlined from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, const char (&)[1], int}; _Tp = savvy::s1r::tree_reader; _Alloc = std::allocator]’ at /usr/include/c++/13/bits/vector.tcc:117:30, inlined from ‘void savvy::s1r::reader::init()’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:678:28: /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:139:45: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 @@ -960,109 +1063,60 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, const char (&)[1], int}; _Tp = savvy::s1r::tree_reader; _Alloc = std::allocator]’: -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In constructor ‘savvy::s1r::tree_base::tree_base(std::streampos, uint8_t, uint64_t, uint64_t)’, - inlined from ‘savvy::s1r::tree_reader::tree_reader(std::ifstream&, std::streampos, uint8_t, uint64_t, const std::string&, uint64_t)’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:455:19, - inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = savvy::s1r::tree_reader; _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, const char (&)[1], int}; _Tp = savvy::s1r::tree_reader]’ at /usr/include/c++/13/bits/new_allocator.h:191:4, - inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = savvy::s1r::tree_reader; _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, const char (&)[1], int}; _Tp = savvy::s1r::tree_reader]’ at /usr/include/c++/13/bits/alloc_traits.h:538:17, - inlined from ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, const char (&)[1], int}; _Tp = savvy::s1r::tree_reader; _Alloc = std::allocator]’ at /usr/include/c++/13/bits/vector.tcc:468:28: -/build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:139:45: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 - 139 | this->entry_counts_per_level_.insert(this->entry_counts_per_level_.begin(), entry_count_); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:145:47: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 - 145 | this->entry_counts_per_level_.insert(this->entry_counts_per_level_.begin(), nodes_at_current_level); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {savvy::s1r::reader::init()::tree_details}; _Tp = savvy::s1r::reader::init()::tree_details; _Alloc = std::allocator]’, - inlined from ‘void savvy::s1r::reader::init()’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:650:46: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 +In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {savvy::genomic_region}; _Tp = savvy::genomic_region; _Alloc = std::allocator]’, + inlined from ‘bool export_prog_args::parse(int, char**)’ at /build/reproducible-path/savvy-2.1.0/src/sav/export.cpp:372:32: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In constructor ‘savvy::s1r::tree_base::tree_base(std::streampos, uint8_t, uint64_t, uint64_t)’, - inlined from ‘savvy::s1r::tree_reader::tree_reader(std::ifstream&, std::streampos, uint8_t, uint64_t, const std::string&, uint64_t)’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:455:19, - inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = savvy::s1r::tree_reader; _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, std::__cxx11::basic_string, std::allocator >&, long long unsigned int&}; _Tp = savvy::s1r::tree_reader]’ at /usr/include/c++/13/bits/new_allocator.h:191:4, - inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = savvy::s1r::tree_reader; _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, std::__cxx11::basic_string, std::allocator >&, long long unsigned int&}; _Tp = savvy::s1r::tree_reader]’ at /usr/include/c++/13/bits/alloc_traits.h:538:17, - inlined from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, std::__cxx11::basic_string, std::allocator >&, long long unsigned int&}; _Tp = savvy::s1r::tree_reader; _Alloc = std::allocator]’ at /usr/include/c++/13/bits/vector.tcc:117:30, - inlined from ‘void savvy::s1r::reader::init()’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:674:34: -/build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:139:45: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 - 139 | this->entry_counts_per_level_.insert(this->entry_counts_per_level_.begin(), entry_count_); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:145:47: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 - 145 | this->entry_counts_per_level_.insert(this->entry_counts_per_level_.begin(), nodes_at_current_level); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, std::__cxx11::basic_string, std::allocator >&, long long unsigned int&}; _Tp = savvy::s1r::tree_reader; _Alloc = std::allocator]’, - inlined from ‘void savvy::s1r::reader::init()’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:674:34: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 +In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {savvy::genomic_region}; _Tp = savvy::genomic_region; _Alloc = std::allocator]’, + inlined from ‘bool export_prog_args::parse(int, char**)’ at /build/reproducible-path/savvy-2.1.0/src/sav/export.cpp:386:32: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In constructor ‘savvy::s1r::tree_base::tree_base(std::streampos, uint8_t, uint64_t, uint64_t)’, - inlined from ‘savvy::s1r::tree_reader::tree_reader(std::ifstream&, std::streampos, uint8_t, uint64_t, const std::string&, uint64_t)’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:455:19, - inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = savvy::s1r::tree_reader; _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, const char (&)[1], int}; _Tp = savvy::s1r::tree_reader]’ at /usr/include/c++/13/bits/new_allocator.h:191:4, - inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = savvy::s1r::tree_reader; _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, const char (&)[1], int}; _Tp = savvy::s1r::tree_reader]’ at /usr/include/c++/13/bits/alloc_traits.h:538:17, - inlined from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, const char (&)[1], int}; _Tp = savvy::s1r::tree_reader; _Alloc = std::allocator]’ at /usr/include/c++/13/bits/vector.tcc:117:30, - inlined from ‘void savvy::s1r::reader::init()’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:678:28: -/build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:139:45: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 - 139 | this->entry_counts_per_level_.insert(this->entry_counts_per_level_.begin(), entry_count_); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:145:47: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 - 145 | this->entry_counts_per_level_.insert(this->entry_counts_per_level_.begin(), nodes_at_current_level); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, const char (&)[1], int}; _Tp = savvy::s1r::tree_reader; _Alloc = std::allocator]’, - inlined from ‘void savvy::s1r::reader::init()’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:678:28: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 +In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int&, long long unsigned int&}; _Tp = std::pair; _Alloc = std::allocator >]’, + inlined from ‘std::vector > savvy::csi_index::query_intervals(const std::string&, const std::unordered_map, unsigned int>&, int64_t, int64_t)’ at /build/reproducible-path/savvy-2.1.0/include/savvy/csi.hpp:312:33: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/vector:72, - from /build/reproducible-path/savvy-2.1.0/include/savvy/compressed_vector.hpp:10, - from /build/reproducible-path/savvy-2.1.0/include/savvy/site_info.hpp:10, - from /build/reproducible-path/savvy-2.1.0/include/savvy/region.hpp:10, - from /build/reproducible-path/savvy-2.1.0/include/sav/utility.hpp:10, - from /build/reproducible-path/savvy-2.1.0/src/sav/index.cpp:8: -/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’: -/usr/include/c++/13/bits/vector.tcc:133:5: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 - 133 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/vector.tcc:170:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 - 170 | _M_realloc_insert(begin() + (__position - cbegin()), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {savvy::s1r::reader::init()::tree_details}; _Tp = savvy::s1r::reader::init()::tree_details; _Alloc = std::allocator]’: -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const savvy::s1r::entry&}; _Tp = savvy::s1r::entry; _Alloc = std::allocator]’: -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 -/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair >, savvy::s1r::tree_base::tree_position>}; _Tp = std::pair, savvy::s1r::tree_base::tree_position>; _Alloc = std::allocator, savvy::s1r::tree_base::tree_position> >]’: -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector, savvy::s1r::tree_base::tree_position> >::iterator’ changed in GCC 7.1 -In file included from /build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp:14: -In constructor ‘savvy::s1r::tree_base::tree_base(std::streampos, uint8_t, uint64_t, uint64_t)’, - inlined from ‘void savvy::s1r::writer::write_internal_nodes()’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:883:173: -/build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:139:45: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 - 139 | this->entry_counts_per_level_.insert(this->entry_counts_per_level_.begin(), entry_count_); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:145:47: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 - 145 | this->entry_counts_per_level_.insert(this->entry_counts_per_level_.begin(), nodes_at_current_level); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair >, savvy::s1r::tree_base::tree_position>}; _Tp = std::pair, savvy::s1r::tree_base::tree_position>; _Alloc = std::allocator, savvy::s1r::tree_base::tree_position> >]’, - inlined from ‘void savvy::s1r::writer::write_internal_nodes()’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:888:60: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, savvy::s1r::tree_base::tree_position>*, std::vector, savvy::s1r::tree_base::tree_position> > >’ changed in GCC 7.1 +In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, unsigned int>&, int64_t, int64_t)::&, const pair&)> >]’, + inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = savvy::csi_index::query_intervals(const std::string&, const std::unordered_map, unsigned int>&, int64_t, int64_t)::&, const pair&)>]’ at /usr/include/c++/13/bits/stl_algo.h:4894:18, + inlined from ‘std::vector > savvy::csi_index::query_intervals(const std::string&, const std::unordered_map, unsigned int>&, int64_t, int64_t)’ at /build/reproducible-path/savvy-2.1.0/include/savvy/csi.hpp:332:18: +/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 + 1947 | std::__introsort_loop(__first, __last, + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + 1948 | std::__lg(__last - __first) * 2, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1949 | __comp); + | ~~~~~~~ +In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, unsigned int>&, int64_t, int64_t)::&, const pair&)> >]’, + inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, unsigned int>&, int64_t, int64_t)::&, const pair&)> >]’ at /usr/include/c++/13/bits/stl_algo.h:1950:31, + inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = savvy::csi_index::query_intervals(const std::string&, const std::unordered_map, unsigned int>&, int64_t, int64_t)::&, const pair&)>]’ at /usr/include/c++/13/bits/stl_algo.h:4894:18, + inlined from ‘std::vector > savvy::csi_index::query_intervals(const std::string&, const std::unordered_map, unsigned int>&, int64_t, int64_t)’ at /build/reproducible-path/savvy-2.1.0/include/savvy/csi.hpp:332:18: +/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 + 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 + 1864 | std::__insertion_sort(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {savvy::s1r::entry}; _Tp = savvy::s1r::entry; _Alloc = std::allocator]’, + inlined from ‘bool create_index(const std::string&, std::string)’ at /build/reproducible-path/savvy-2.1.0/src/sav/index.cpp:183:50: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 + 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const savvy::s1r::entry&}; _Tp = savvy::s1r::entry; _Alloc = std::allocator]’, + inlined from ‘savvy::s1r::writer& savvy::s1r::writer::write(const std::string&, const savvy::s1r::entry&)’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:857:40, + inlined from ‘bool create_index(const std::string&, std::string)’ at /build/reproducible-path/savvy-2.1.0/src/sav/index.cpp:214:16: +/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {savvy::s1r::entry}; _Tp = savvy::s1r::entry; _Alloc = std::allocator]’: -/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 - 445 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, std::__cxx11::basic_string, std::allocator >&, long long unsigned int&}; _Tp = savvy::s1r::tree_reader; _Alloc = std::allocator]’: /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 + 445 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ In constructor ‘savvy::s1r::tree_base::tree_base(std::streampos, uint8_t, uint64_t, uint64_t)’, inlined from ‘savvy::s1r::tree_reader::tree_reader(std::ifstream&, std::streampos, uint8_t, uint64_t, const std::string&, uint64_t)’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:455:19, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = savvy::s1r::tree_reader; _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, std::__cxx11::basic_string, std::allocator >&, long long unsigned int&}; _Tp = savvy::s1r::tree_reader]’ at /usr/include/c++/13/bits/new_allocator.h:191:4, - inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = savvy::s1r::tree_reader; _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, std::__cxx11::basic_string, std::allocator >&, long long unsigned int&}; _Tp = savvy::s1r::tree_reader]’ at /usr/include/c++/13/bits/alloc_traits.h:538:17, + inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = savvy::s1r::tree_reader; _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, std::__cxx11::basic_string, std::allocator >&, long long unsigned int&}; _Tp = savvy::s1r::tree_reader]’ at /usr/include/c++/13/bits/alloc_traits.h:538:17, inlined from ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, std::__cxx11::basic_string, std::allocator >&, long long unsigned int&}; _Tp = savvy::s1r::tree_reader; _Alloc = std::allocator]’ at /usr/include/c++/13/bits/vector.tcc:468:28: /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:139:45: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 139 | this->entry_counts_per_level_.insert(this->entry_counts_per_level_.begin(), entry_count_); @@ -1077,7 +1131,7 @@ In constructor ‘savvy::s1r::tree_base::tree_base(std::streampos, uint8_t, uint64_t, uint64_t)’, inlined from ‘savvy::s1r::tree_reader::tree_reader(std::ifstream&, std::streampos, uint8_t, uint64_t, const std::string&, uint64_t)’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:455:19, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = savvy::s1r::tree_reader; _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, const char (&)[1], int}; _Tp = savvy::s1r::tree_reader]’ at /usr/include/c++/13/bits/new_allocator.h:191:4, - inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = savvy::s1r::tree_reader; _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, const char (&)[1], int}; _Tp = savvy::s1r::tree_reader]’ at /usr/include/c++/13/bits/alloc_traits.h:538:17, + inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = savvy::s1r::tree_reader; _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, const char (&)[1], int}; _Tp = savvy::s1r::tree_reader]’ at /usr/include/c++/13/bits/alloc_traits.h:538:17, inlined from ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, const char (&)[1], int}; _Tp = savvy::s1r::tree_reader; _Alloc = std::allocator]’ at /usr/include/c++/13/bits/vector.tcc:468:28: /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:139:45: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 139 | this->entry_counts_per_level_.insert(this->entry_counts_per_level_.begin(), entry_count_); @@ -1093,7 +1147,7 @@ In constructor ‘savvy::s1r::tree_base::tree_base(std::streampos, uint8_t, uint64_t, uint64_t)’, inlined from ‘savvy::s1r::tree_reader::tree_reader(std::ifstream&, std::streampos, uint8_t, uint64_t, const std::string&, uint64_t)’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:455:19, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = savvy::s1r::tree_reader; _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, std::__cxx11::basic_string, std::allocator >&, long long unsigned int&}; _Tp = savvy::s1r::tree_reader]’ at /usr/include/c++/13/bits/new_allocator.h:191:4, - inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = savvy::s1r::tree_reader; _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, std::__cxx11::basic_string, std::allocator >&, long long unsigned int&}; _Tp = savvy::s1r::tree_reader]’ at /usr/include/c++/13/bits/alloc_traits.h:538:17, + inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = savvy::s1r::tree_reader; _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, std::__cxx11::basic_string, std::allocator >&, long long unsigned int&}; _Tp = savvy::s1r::tree_reader]’ at /usr/include/c++/13/bits/alloc_traits.h:538:17, inlined from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, std::__cxx11::basic_string, std::allocator >&, long long unsigned int&}; _Tp = savvy::s1r::tree_reader; _Alloc = std::allocator]’ at /usr/include/c++/13/bits/vector.tcc:117:30, inlined from ‘void savvy::s1r::reader::init()’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:674:34: /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:139:45: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 @@ -1110,7 +1164,7 @@ In constructor ‘savvy::s1r::tree_base::tree_base(std::streampos, uint8_t, uint64_t, uint64_t)’, inlined from ‘savvy::s1r::tree_reader::tree_reader(std::ifstream&, std::streampos, uint8_t, uint64_t, const std::string&, uint64_t)’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:455:19, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = savvy::s1r::tree_reader; _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, const char (&)[1], int}; _Tp = savvy::s1r::tree_reader]’ at /usr/include/c++/13/bits/new_allocator.h:191:4, - inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = savvy::s1r::tree_reader; _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, const char (&)[1], int}; _Tp = savvy::s1r::tree_reader]’ at /usr/include/c++/13/bits/alloc_traits.h:538:17, + inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = savvy::s1r::tree_reader; _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, const char (&)[1], int}; _Tp = savvy::s1r::tree_reader]’ at /usr/include/c++/13/bits/alloc_traits.h:538:17, inlined from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::basic_ifstream >&, std::fpos<__mbstate_t>&, unsigned char&, long long unsigned int&, const char (&)[1], int}; _Tp = savvy::s1r::tree_reader; _Alloc = std::allocator]’ at /usr/include/c++/13/bits/vector.tcc:117:30, inlined from ‘void savvy::s1r::reader::init()’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:678:28: /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:139:45: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 @@ -1124,26 +1178,10 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 75%] Building CXX object CMakeFiles/sav.dir/src/sav/sort.cpp.o -/usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -I/build/reproducible-path/savvy-2.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -MD -MT CMakeFiles/sav.dir/src/sav/sort.cpp.o -MF CMakeFiles/sav.dir/src/sav/sort.cpp.o.d -o CMakeFiles/sav.dir/src/sav/sort.cpp.o -c /build/reproducible-path/savvy-2.1.0/src/sav/sort.cpp -In file included from /build/reproducible-path/savvy-2.1.0/src/sav/sort.cpp:8: -/build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp: In member function ‘std::vector > savvy::reader::subset_samples(const std::unordered_set >&)’: -/build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp:292:78: warning: conversion from ‘long long unsigned int’ to ‘std::vector::value_type’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] - 292 | subset_map_.resize(ids_.size(), std::numeric_limits::max()); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ -In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {savvy::s1r::entry}; _Tp = savvy::s1r::entry; _Alloc = std::allocator]’, - inlined from ‘bool create_index(const std::string&, std::string)’ at /build/reproducible-path/savvy-2.1.0/src/sav/index.cpp:183:50: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const savvy::s1r::entry&}; _Tp = savvy::s1r::entry; _Alloc = std::allocator]’, - inlined from ‘savvy::s1r::writer& savvy::s1r::writer::write(const std::string&, const savvy::s1r::entry&)’ at /build/reproducible-path/savvy-2.1.0/include/savvy/s1r.hpp:857:40, - inlined from ‘bool create_index(const std::string&, std::string)’ at /build/reproducible-path/savvy-2.1.0/src/sav/index.cpp:214:16: -/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 - 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 83%] Building CXX object CMakeFiles/sav.dir/src/sav/stat.cpp.o /usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -I/build/reproducible-path/savvy-2.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -MD -MT CMakeFiles/sav.dir/src/sav/stat.cpp.o -MF CMakeFiles/sav.dir/src/sav/stat.cpp.o.d -o CMakeFiles/sav.dir/src/sav/stat.cpp.o -c /build/reproducible-path/savvy-2.1.0/src/sav/stat.cpp +[ 91%] Building CXX object CMakeFiles/sav.dir/src/sav/utility.cpp.o +/usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -I/build/reproducible-path/savvy-2.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -MD -MT CMakeFiles/sav.dir/src/sav/utility.cpp.o -MF CMakeFiles/sav.dir/src/sav/utility.cpp.o.d -o CMakeFiles/sav.dir/src/sav/utility.cpp.o -c /build/reproducible-path/savvy-2.1.0/src/sav/utility.cpp In file included from /build/reproducible-path/savvy-2.1.0/src/sav/stat.cpp:11: /build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp: In member function ‘std::vector > savvy::reader::subset_samples(const std::unordered_set >&)’: /build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp:292:78: warning: conversion from ‘long long unsigned int’ to ‘std::vector::value_type’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] @@ -1263,8 +1301,6 @@ /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 91%] Building CXX object CMakeFiles/sav.dir/src/sav/utility.cpp.o -/usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -I/build/reproducible-path/savvy-2.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -MD -MT CMakeFiles/sav.dir/src/sav/utility.cpp.o -MF CMakeFiles/sav.dir/src/sav/utility.cpp.o.d -o CMakeFiles/sav.dir/src/sav/utility.cpp.o -c /build/reproducible-path/savvy-2.1.0/src/sav/utility.cpp In file included from /usr/include/c++/13/bits/stl_algo.h:61, from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/savvy-2.1.0/include/savvy/compressed_vector.hpp:11, @@ -1437,7 +1473,7 @@ create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install - cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/reproducible-path/savvy-2.1.0/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/build/reproducible-path/savvy-2.1.0/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/savvy-2.1.0/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/savvy-2.1.0 -B/build/reproducible-path/savvy-2.1.0/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -1448,36 +1484,36 @@ /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy --- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/allele_status.hpp +-- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/dictionary.hpp +-- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/sav1.hpp +-- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/site_info.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/data_format.hpp --- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/eigen3_vector.hpp --- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/csi.hpp --- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/varint.hpp +-- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/armadillo_vector.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/sample_subset.hpp --- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/portable_endian.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/compressed_vector.hpp --- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/writer.hpp --- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/pbwt.hpp --- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/file.hpp --- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/typed_value.hpp --- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/variant_iterator.hpp --- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/dictionary.hpp --- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/ublas_vector.hpp --- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/variant_group_iterator.hpp --- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/s1r.hpp +-- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/sav_reader.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/sparse_vector.hpp --- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/reader.hpp --- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/vcf_reader.hpp +-- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/varint.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/logging.hpp --- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/utility.hpp --- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/savvy.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/endianness.hpp --- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/sav1.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/m3vcf_reader.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/region.hpp --- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/armadillo_vector.hpp --- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/sav_reader.hpp --- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/site_info.hpp +-- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/csi.hpp +-- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/ublas_vector.hpp +-- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/portable_endian.hpp +-- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/reader.hpp +-- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/variant_group_iterator.hpp +-- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/pbwt.hpp +-- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/typed_value.hpp +-- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/variant_iterator.hpp +-- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/utility.hpp +-- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/vcf_reader.hpp +-- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/file.hpp +-- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/allele_status.hpp +-- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/s1r.hpp +-- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/eigen3_vector.hpp +-- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/writer.hpp +-- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/savvy.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/bin/sav -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/share/savvy/savvy-targets.cmake -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/share/savvy/savvy-config.cmake @@ -1501,8 +1537,8 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'libsavvy-dev' in '../libsavvy-dev_2.1.0-2_all.deb'. dpkg-deb: building package 'savvy-util-dbgsym' in '../savvy-util-dbgsym_2.1.0-2_armhf.deb'. +dpkg-deb: building package 'libsavvy-dev' in '../libsavvy-dev_2.1.0-2_all.deb'. dpkg-deb: building package 'savvy-util' in '../savvy-util_2.1.0-2_armhf.deb'. dpkg-genbuildinfo --build=binary -O../savvy_2.1.0-2_armhf.buildinfo dpkg-genchanges --build=binary -O../savvy_2.1.0-2_armhf.changes @@ -1511,12 +1547,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/31259/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/31259/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/15382 and its subdirectories -I: Current time: Thu Apr 4 10:08:36 -12 2024 -I: pbuilder-time-stamp: 1712268516 +I: removing directory /srv/workspace/pbuilder/31259 and its subdirectories +I: Current time: Fri Apr 5 12:16:22 +14 2024 +I: pbuilder-time-stamp: 1712268982